Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1062713554 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1062713554.PHASTER.zip
gi|00000000|ref|CP012566.1| Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-5, 127690, gc%: 52.92%
Download summary as .txt file: summary.txt file_download
Total: 2 prophage regions have been identified, of which 0 regions are intact, 2 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 10.4Kb | incomplete | 20 | 14 | 1721-12122 info_outline | PHAGE_Entero_P1_NC_005856(3) | 54.68% | Show info_outline |
| 2 | 8.2Kb | incomplete | 30 | 12 | 18241-26442 info_outline | PHAGE_Entero_N15_NC_001901(2) | 53.29% | Show info_outline |
Region DNA
>1 1721-12122 ATGGACAATATTGAGCAGTTACGGAAAGTCGCTACACGTGCAGGTAAGCTTCTGACATCTTTGAGCGAAA GTATCCGCCAGCAAAAAGAGGAATTGAAGCTTACCGAGTTCTATCAGGAATACAGCAAAGCCGCTCTGTA TAAGCTGCCTAAGCTCAGTAAAGGCAGTGTTGAGTATGCTGTGGCCGAAATGGAAGCCGGTGGCTACATT TTTAAAAAGAAACCTTCTGGTAATACGATGAAATACGCGATGACGATTCAGAATGTCATCGATCTGTATA ACCATCGTAAAGTACCGAAGTACAGGGATCGCTTCGATAAAGCCTTTACGATTTTTGTATGTAATCTTAA AGGTGGTGGTTCCAAGACAGTTTCTACCGCTTCATTATCACATGCTTTTCGAGCTCATCCTCAGCTTCTG TTCGAAGACCTGCGTATTCTGGCCATCGATTTCGATCCGCAGGCATCTCTGACAATGTTCCTGAGCCATG AGAATTCAGTGGGCTTGGTTGAAAATACGGCTGCTCAGGCCATGCTCCAGAACGTGTCTCGAGAAGAATT ACTTTCCGATTTTATAGTACCGTCTATTATCCCTGGTGTTGATGTAATCCCCGCTTCCATTGACGATGCA TTCCTTGCTGAAGGCTGGAAGGGATTGTGTGAAGAACATCTGCCAGGGAAAAATATTCATGCGGTGCTTA AAGAGAACATTATCGACAAGCTCCAGCATGACTACGACTTTATTTTCCTTGATAGTGGTCCTCACCTTGA TGCGTTCCTGAAAAACTGCATTGGAGCGGCAGACCTGATGTTGACCCCTCTTCCACCGGCGACGGTTGAT TTTCATTCTTCCCTAAAGTTTGTGGCCAGCCTCCCTGCCCTCATAGATTCCATTGAAATGGATGGGCACA CCTGCAATCTCATCGGTAATGTCGGCTTCATGTCCAAGATCCTGAACAAGTCTGATCACAAAATTTGCCA TAGTCAGGCCAAAGAGGTTTTCGGTGCCGATATGCTAGACATGGTTCTGCCGAGACTGGATGGTTTCGAA CGCTGTGGGGAGACTTTTGACACAGTTATTTCAGCAAATCCAGCAACCTATGATGGAAGTACAGAGGCAC TAAAAAGCGCAAAATCAGCAGCGGAAGACTTTGCGAAGGCAGTCTTTGATCGCATCGAGTTCATTCGTAC TAACGGAGGTATGTGATGTCGAATGAGAAAAGAAAAACCATCGGCAGACAGTTAAATACCCAGGCGTCAA TAGCGGAAATGACGGACACCGGTAGAAGCCAGGTATTTACCTTAAAAACCGGCAGGAAGGTAACGTTCAG GTTTGTTCGGGTGCCTGCATCTGAAGTTGAAAGTAAGACATTCGTTAACCAGGAAAACAATGGAAGAGAT CAACTTGCACTGACCAGGGAGTCCCTGAAATCCATTATCCAGACGATTAAGTTTCAGCAGTTCTTTCCCT GTATTGGTATTAAGCAAAGTGAAAGGATTGAGATACTGGATGGTTCAAGACGGCGAGCCTCAGCAATTTT TGTCCGTACAGGCCTTGATGTAATGGTTACCGAAGAACATTTATCAGCTGATGAAGCTCGCCAACTGGCT AAAGATATCCAGACAGCTAAAGAACATAATCTTCGGGAGATTGGGCTGAGATTGATCGCTCTTAAAGAGT CCGGATTTAATCAAAAGGAAATTGCTGAACTGGAGGGGTTATCTCAGGCTAAAGTTACCAGGGCGCTGCA GGCGGCGGCCGTACCGCAAGACTTAATTTCTCTGTTCCCGGTTCAGTCGGAGCTATCGTTTAGTGACTAT AAACTTCTTTTAGAAGTTAATGAAAAACTTAGTGAAAAGGGATTAACTCCTGAAGAACTCATTCAGGCTG TATCAGCTCAGCTCGATGCAATTTTGAATGATGGCGAGCGACCAGAAGACGAACAGAAAGCCAGTATTCT GAAGCTGATTTCTCAGGCATCTCAGGCATTAATCGATCCATCTCCCAAGGAAAAGTCAGTGGTTTCCCCA CTCTGGTCTTTTGAAGAAAAGGACAAGTTCGCGCGTAAGCGTGTGAAAGGGCGCACGCTGACTTATGAGT TTAGCCGTATGTCAAAAGTGATTCAGGATGAACTGGACAAGGCTATCAACGAGGTCCTTGACAGAAATTT GAGTCAATAATTTCGCCATGGCGATTTCACATCTAACTTATTGTAATTAGGCAGTTTAGGCTGAGAATTT CAAGGTGAAATCGCCATAGTTTCACGCCAGTTTCGCTGCAGGAATATCTGACCATCGTGTCGTATAAGCA GGAGAAAGCATCTCCCGTTTCATCTGCCATTCCGAGGCCATACCCCGCCCCGCAAACCATACTTTACCCA GCCCTGAGTTGTTGATCCCGTCCAGAACCCTCATCAGCTCAGCACTGTGAGGGCGTGGCGGGCGTTCGTC GAACAGCTGCAGCTGCGAAACGCCGGAGCCGGTGAAGTCATTCAGCATAACTCCGGCTTTGGCATACCGG TGCCCATCCCTCCAGATACGCTCCAGAGCCGTTGTAGCGGCTGCAATGATGTCCCTGGTGTCCTGAGTGG GTGTAAGAAGTTTTTCCGTAGCCACGTTGCCGTAGTAAGGCCCTTTAATGGCGAACGGAGACGTTTTGAT GAAAACGGAAATATGCCGGCAATACTGGTGCTCTTTACGCAGTTTTTCAGAGGCCCGCTCTGCGTGCTGA CAGATAGCCTGACGGAGTGACTCGTACTCCGTGATCTTCACGCCAAAACTGCGGCTGCAGACAATTTGCT GTTTCGTCGGAGGGGCTTCCTCAAGCGAAAGGCAGCTTTCCCAGTTCAGTTCCCGTACCGTTCGCTCAAG GACCACAGAAAAATTTTTGCGGATGAAGGCCGGGTTCGTCAGAGCCAGATCGAGCGCGGTTTTTATGCCC AGCACATTTAGCTTGCGTGCAATACGGTTACCCACCCCCCAGATTTCTTCAACCGGCTGCAGTGAAAGCA GTTTCCGCGTCCTTTGCGGATTTCCCCTGGTCAGCGCGAGTACGCCACGAAACTGTTTCCACTCTTTTGA GGCCCACTGGGCTGATTTTGCGAGGGTTTTCGTTGGTCCGGCGCCCACGCCAATGGTCAGGCGGGTACAG TCATACACGTGCTGACGCAGCTGCCGGCCGAAGTCCTCAAGCCCCATACAGTGCTCCACGCCGGTCAGGT CGAGGAACATCTCATCAATGGAATACTGTTCCACCCTGGGGGCCAGTTCCTCCAGGCAGTTCATCACGCG CGCCGACATCGAGGCGTAAAGTTCATAATTACTTGAAAACGCATATATTTTTTCCGGGTACCTTTCGTTT TTTATCTGAAACCACGGAGTTCCCATTTTGATCCAGGGCTTCGCCTCGGCACTGCGAGCGATTACGTTCC CGTCGTTGTTGCTCAGGACGACTATCGGCTTTCCTTTCAAATCCGGGCGGAAAACACGTTCACAGCTGGC ATAGAAGCTGTTCACATCGGCCAGGGCAAACATCAGTACATCTCCCTCGGGCGGTGGATGATATGCGTGA CGACGCCAAAGATATCCAGCTCGTCGGGATCAGGATAAATCGGCGACCAGGAGGCATTCATGGGCTGCAG CGTCAGCCGCGGCGTCAGCAGCAACCGTTTGACCGTAAACTCCCCCTGTACGCTGGCGACAACGATATCG CCGTGCCGCGGCTTTTCAGCACTGTCCACAACCAGCAGATCGCCATTGTACAGACTGCCGTCGGCCATGC TGTCTCCGCTGGCACGCAGGTAGTACGTCGCGCTCGGATGCCGTATGCAGTAATCATGGAGATCCAGATC GGACTCGACATAGTCAGCAGCAGGGCTGGGAAAACCGCAGCTGGCCAGATCGGCAAACAATGGATGGGCC TGTGGCGGGAGTTCTTTCCCGGTGCTGAAAAGTTGTAGTTTCATCTTTCCTCCTGACACTCTAATTTTTA CTGGTTATGCATACAGTATATTTAACAGCGTGACGATAATCCAGATCGCATGCCTTAAGAACATTTTGAG TAAATAAAGGTGTTCAAAATGCTTATATTAATCATTTTGATATTTTTGTATTGCTCATATTGAGAAATGT TACTTTGTTTTTTTCATCTTGCTCTTATAATTGGTATCAAATTGAGTGTAACTAACGGAGCATATTGATG AATATTTACTGCGATGATGGTTCAACTAATGTTAAGCTGGCATGGTTTGAAGGCGATGAGCTTCAGACCC GGGTTTCTGCGAACTCCTTCCGGCATGGCTGGAAAGTGGCGGAATTCAGTGCGGCAACGTTCAACTATCA GGTGGGTACGCTGAAATACACCTGGGACAGCGTCAGCCGGGATGCCATCCCGACAACAAACGTGGAATAT CAGTACGGTGATCTCAACCTGCTGGCCGTGCATCATGCGCTGCTGAACAGCGGACTGGAGCCGCAGCCGG TGAGCCTGACCGTGACGCTGCCCCTGAGTGAGTATTACGACGGGGACTGCCAGCGGAACGAGGAGAACAT ACGACGCAAACGGGAAAACCTGATGCGTGAGCTGGTTCTGAATAAGGGCAGGGCATTTACCGTAACGGAC GTGAAGGTGATGCCGGAATCACTACCGGCGGCGTTCTCCCGTCTCGCGGAGCTGAAACCCGGCCCCGCTG AGACCACCCTGATTATCGATCTCGGTGGTACCACGCTCGATGCCGGTGTGATTGTCGGCCAGTTTGATGA TATCAGTGCGGTGCACGGTAATCCGTCTGTCGGCGTGTCACAGGTCACCCGCGCAGCTGCAGGCGCGCTG CGTGCGGCAGACAGCGAAACCAGCGCCCTCATCGCTGACACTATCATCCGCAACCGCAATGATCGTCAGT ATCTGCAGCGTGTGATCAACGATGCCGGTAAAATCGACGAGGTTCGGAACAAAATAACAGAGGCGATCAC TTCCCTGGGGGCGCGTGTCACCAGTGAGCTGACGGCCTTCAGGAACGTTAACCGGGTATTCCTGGTCGGG GGAGGGGCTTCCCTCATAGAAGAAGCTATCCGTCAGGCCTGGCCTCTGGCTCATGACCGTATCGAGGTTA TAGGCGATCCGCAGATGGCGCTGGCCAGGGAGATTGCCCTTTACAATAAAGAGGACTAAACGTGCCGGAC GGCCAGTATTCTTTCTATCTGCACAGCGACGATCGCACCGACATCGCGGCGATGGCAACCATCAGCACCA TCTCACAGCCCCTGCGCGGTGAGTTCATCCGTACCGCCGCCACCGCCGGGGCGGTGGTATACCAGGTGGA TGCCCGTTTACCGGCGCTGATCCCGGTGTTCTTTGCCGGGCAGCTGAGCGCTGTCCGCCTTTGCGCCGTG ATGGCCCTGGTCTCCGGAACCTGGTCCTCACTCACCGGCCTTCCGGATGAGCCCGAAAATGGTGGGGCTG CTCTGCCCGTGTCACCGGAGACGGAATACCAGCGCCGGCGTTACACCCTGACGCTTCAGAATGGCCGGAG TGGGGAACGGGTGGAAAGTGTGCTGACGGAAGCGTCATCCCGTCTGCGTGGGGATCTGCTGAGAAACCTG ATTATCACCGGTCTTGCCCTCCACACGACGGCGCCTGAACTGCCGCGCCTGCTGGCCAGTATGCCGGTAC CGCCCACCTCGGTCAGTGAGCTGCAGGCTCTGGTTCAGCAGATGGCCGGCACCGCTGACGTGAACAGGGC TGCAGCTGCAGTACCGGATACGCCGGCAGCATCTGCCGCGCCGGTGTCCGGGGCGGATACCCGGGAAATA AAGAAAAATATGCGGCGTGCATTCGGTGACTAACAGTACGAATCACATCCACTACTATACCGATTTCAAA TGACTGGCATCCCAGGGAGGTTCTCATGTCACCAGGATTCAGAAATGTTCTCCGTCTCGCCCGCATTCCC GTCGACAGCAGTGAACCGGTGCGCAGAAAATTTGGCAGCCGGCTGATTGGCATTGTGACGGTATGTCTGC TTCCGCTTCTGGTTTTCGACGTTCCGCAGTGGGTTTTCATTTTGTCGCAGGTCATCTGGGGGGCTGGCGT CTATATTGGCCTGTCCCTGGCCGGGGATAAATCCCTGAACCGCTGATACAAACTTTCCGGTTGTTCAAAA AAAGAACAGACGTGGTGGCGTCTGTTCTCCCGCGCTTCTCCGTCGTTTGCCTTCAGGTTATCCACAATTT TAAGCCCCGGATTTGTGGACAGGTATGCCGGTAATTCCCCGTTCGCCTGGAGTTAACGCCAGCCTGCCGC CCGCTGCCAGTGTCTCGCGTCCGGTCTGGTACGGGACGGGCGGTTTTTCCGCTCCGGCCCGGCGTCGTTG AGAGTGTGCGCCAGTCCCTCGCCCTTTTAAGGAACGCCCTTCAAGCCGCTTTCGCGGCATATCCTTGCCG TCCAAAAGACGGACGGCTGCGGTATTCCACGGTCGGCCTGACCCGTGACCGGACGCGATGAACAGGCAGC GTGCGGCAGGGAACGGTATCGCGGTGATGCCTCCTGCCCCCTCAGACTACAGGAGTGCTGCCATGTCCAG ATTCATTCTCGGGAACTGTATTGATGTGATGCGCGGATTCCCCGACCGTGCCGTGGACCTTATTGTGACC GATCCGCCTTACCTCGTCGGTTTTAAGGACCGTCAGGGCAGACAGATTGCCGGGGATGTGACGGACGAAT GGCTGCAACCGGCCACGCTGGAGATGTACCGCGTCCTTAAAAAAGACGCACTGATGGTGAGCTTCTACAG CTGGAACCGTGTGGACCGCTTTATGGCCGCGTGGAAGGCGGCAGGATTCTATGCCGTGGGCCAGCTTGTG TTCACCAAAAACTATGCCTCCAACCGTCGTAACGCCAGGGCCCGACGCGGATTTGTGGACTACTGCCATG AAGGGGCTTATGTCCTTGCCAAAGGCCGCCCCGTGCCGCCCCTTAAACCGCTGCCGGATGTGCTGCCCTT CCCGTATACCGGTAATACCCTGCATCCGACGCAGAAACCAGTGGAGGCGCTACAGCCGCTGATTGAGTCA TTCAGCGCTCCGGGCGCGATTGTTCTCGACCCGTTTGCCGGAAGCGGTTCGACCTGCGTCGCTGCATACC GTGCCGGACGCCGCTATATCGGCATCGAAATGCTGGCGCAGTACCACCGGGCCGGAACCGAACGACTGGA CGCCATGCACCGGGCCGTCAATACCCCGGCGGCGAACGATGAATGGCTCCCGGAGGCCGCGTAATGAATT ACGACGGACACGAAGCCCTGCGCCGCGATATGGCCGGGCTGGCGAACAATCTTTGCGACCTGAAAACCAC CCTGAAAGTGCTGGAAGACACGTACCACTACCGGTACGACGGACTGGCGGAACGGCTTGCCGGTATCAGT CTGCGACGTCTCAGCGTCCTGATGGATGAGGCGTTCAATATTGCACTGATGCTCGATGAAAGCTTTCTGG ATTGAGGAGAGAACATGTACGGAACCCGTGAAGATCTTTGCAGGATGCTGAATGAGCAATATCCCGCAGA AACCCCGCTGAACCTGATTATCTGGACCCCGGCGGATATTGAAGCACTGGCTGACGGGATGGAATATTCC TTTTCAGAACATGACGTAAGGGCAGTACTGGAACGCATGGACACTATACCGGAAGAACAACGGCTTGAGT CGGGCGTGTCAGCCGGCCTGGTGATGGCACTGATAGACCAGGTGAAAGAGAACGGGCAGAGGGTGACTGT GCCGGTTGACCTGCTTGAAACCCTGCTGATTACCGCCGAACAGGCATTGTGGGACAGGGAATGGACCGCA CGGGATCGCAATCTCCCGGTGCCGGAAAGCGTAATGCGCCGCCTGGCGGATACAGCAAAAGTGCGGGCAT TACTGAAAAGCTGACAGCAGATCGCCCCGCCACGCGGCGGGGTGATATAACCCGGACAGAGACGATAATG ATGAAAAAAGAAACCCTTAACACGCTTATTCTGCGTCACGGCGACCGGATGCTGCGCCAGGCTGGCTGGC CCGACACTGTTGATATGGCGCCCGTCGCCCCCGAAACCGTACCCGGCTGGCTTGCCGCCTGCGGCTCTCT CAGTGGCGTGGAAATCCTCACGCTTACGGAACAGCTTTGTCAGCCGCTGACGTATGGCCGGGCAGCGTTG TTGCTCGCCAGCGCCCGGCGGCTGGCGGGAACCCCGGCTCGTCTGCATCTCTTTCCGGTGCAGGCATATC CGCATCCGGAGCGGCTGGCTGACTGTCAGGTTATCCGCCTGCCTTACGCTCAGGAGTGGCTGACAGCGGC GGAATGTGACGATCTGCTGGCCTTCCTGAAAGCCTCCCTCACGCAGATATCGGAAATCGTCCACCGGGAT ACGAAGCGCATCGCCGCCGCGCTTACGCCGTCCGTCAATCCCCGTCTGATGGACAGGCGGATCGGTGACT GGCGCTTGCTGGCCGTGGAGTATGATCATGATAACTGCCTGGACGAAGACGAAACCGACAGGCTGGATCA GGTCCTCGATGCCATTCTGATTCGCGATGCGCGATTCTGCCCGGTCCTGCTCACCCTGGTTAACGAGCGG GAGGAAACTATCAGGAGCGCAGGGGTTATCGCTGATCAGCTGCGTTTTACGGACACTCCGGTCCGGCGCT GGTTTGATCGCCGGGTTTTAAGGGAAATGGTGAGGGAGGCCCGCGCCAGCAGAACTCAGGAGTGACAGCC CGGCGCATCAGGGGAGGGGACCCTCCCTTGTCAGCTTGCCGGCACAGGAGGTGTGGTGCGATAAGGATGT CGCCGTGCCGGCTCCGCGTCCACCCGGCCCGGTTTCCGGGCCTTTTGGGTGAACACAACCCTCTGTTATC GCCGTGCCGTGTGCTGGCTTTGCCGTGCCTTCACTTTAGCCCGGCAGCCGCAGAGGCTGGAGTTCGCTGG CGCCGCCATCCCCGGATAAGGCAGTCGCCGGCTTGCCGTTGCCGCCGGCTCCGCTTCACCCGGCCCCATC CCTCCGGTCCGAGGCCTTATTACTGCGTCTGTCGCGTTGCGACATCTGCTTCCGCTTTTCTCCCGGTGGT CGAAAAACGGGGGAGAGAAACCCTGTATTCAACCTCCTGCATCGCGACGGGTTGTGCCGTGCCTTCACTT TAGCCCGGCCGCTGCAGATGCAAGGGTGCGCTGACGCCGCCATCCTCGCCCGGTCGCAGGTTTTTTATGA TGCTCGCCGTTCTTCCCGTCGTTTTCTCGCTCAGGTTTCGCTCGAAAACCGTCCAGACCAGCTTCGCGCT ATATCTGCGCTGCGGCCTCCGGTGTCGCCCCTGCATCTTCCGCTTTTCGCCGGGCTGTCGTGTCGGCACG GCACAACCCGGTGCCGCAGTCTATGTGATTACGGAGGTTTATCCATGCAGTATGTGAATACATGCCCGGT CCTGAATGTTGAAGAGTGTGACCGCCTGTCTTTTATGCCGTACCTGTTCGGCACGGATTTCATGCTCGCG GAATTACAGGTGTACGCTCTGGCCAAAAAATGGATGCCCGGCTATGAGGGCGGCTTCTGGCATTTTATTC GCCTGCCGGAGGGGGGCGGCTACATGATGCCGGATTGTGGCCGGGTACATCTGGTCAGTAGCGAAAACTG GTTTGATCGCACTGTCAGCGCCGACGCGGCGGGCATTATTCTGACCAGCCTGGCGATTAATCGCCGTCTG GCGGCCCATCATGACAGCAGTAACCCGGCGCTGACTCGCCTTTATATGCTGCGTGATGCCCAGCTCTGGA ATCACATCACCTTTCACCCCGAATGCAGTGCTATTTACGCCGCGCTGGACTGATTAACGACCGGGGCGGT TACACCGCCCCGCAGGGAGACAAAAATGACTTCATCAGTAACCGTTCCGGCCGTCTACGTGGGCACATAT CACCAGTACAACGGCGGCAGTATTTTTGGCAAATGGTTTGATTTAACCGACTTCGACGACGAAGACGAAT TTTATGACGCCTGCCGGGCGTTGCATGCCGCCGAGGATGACCCCGAGTTTATGTTTCAGGACTGGGAAGG GATCCCGTCTCAGTTTGCCTCTGAATCCTCTGTTAAGTGGGCGTTTATCGAGGCATTCCTGCAGGCGCAG GACGAAGGACGCGCTGCCGCGTTTGTGGCCTGGGCGGACTATACCGGCGAGTGCGACTATGACGCCTTTG ATGAGGCGTATTGTGGCGAGGCTGAAAGCGAGGAGGATTTTGCTTATGGCTTTGTGGAGGATCACGGCCT GTTAAACGAGGTGCCTGAATCCCTGCGCGTCTATTTCGATTATGAGGCTTACGCGCGGGATCTGTTCAGC AGCGGCTATGTCTTCCATGAAGGCTATGTATTCAGCAACTGA
Region Details
| Region | 1 |
| Region Length | 10.4Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | recombinase |
| Region Position | 1721-12122 |
| # tRNA | 0 |
| # Total Proteins | 14 |
| # Phage Hit Proteins | 9 |
| # Hypothetical Proteins | 3 |
| Phage + Hypothetical Protein % | 85.7% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 8 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_P1_NC_005856(3) PHAGE_Salmon_SJ46_NC_031129(3) PHAGE_Entero_N15_NC_001901(2) PHAGE_Yersin_PY54_NC_005069(2) PHAGE_Cronob_ENT39118_NC_019934(2) PHAGE_Salmon_vB_SosS_Oslo_NC_018279(2) PHAGE_Mycoba_UnionJack_NC_028802(1) PHAGE_Rhodoc_CosmicSans_NC_028677(1) PHAGE_Rhodoc_RGL3_NC_016650(1) PHAGE_Strept_phiARI0004_NC_031920(1) PHAGE_Klebsi_phiKO2_NC_005857(1) PHAGE_Rhodoc_RER2_NC_016653(1) PHAGE_Pseudo_YuA_NC_010116(1) PHAGE_Pseudo_MP1412_NC_018282(1) PHAGE_Mycoba_Theia_NC_028960(1) PHAGE_Entero_P88_NC_026014(1) PHAGE_Staphy_vB_SepS_SEP9_NC_023582(1) PHAGE_Bacill_SPbeta_NC_001884(1) PHAGE_Staphy_Stau2_NC_030933(1) PHAGE_Pseudo_M6_NC_007809(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 21.42% |
| GC % | 54.68% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Region DNA
>2 18241-26442 ATGTCTGCAACAGAGTCTAAGGTAAAAACTGCACCGAAAACCAGCAAAAAAACGCTTAAGTCTGCCGAAG CTGAGGCGCTTAAAGTGGCTCTCGATGCCGCACAGGTCGAGTATGTCCCGGTGACGGCACTGGTGAAGTC TCCCCTGAACGTCAGGACCATTCCCTATCCGGCGGAGAAAGTCTGTTCAATGGCAGATTCCATTGAAGCC ATTGGCCTGTTGCAGAATCTGGTCGTGCATAACCTCCCGGATGGTCGCTGTGGTGTGGCTGCCGGTGGTC GTCGCCTGAAAGCGCTGCAGCTCCTGCAGAGTGAAAACCGTATCGATGCCGGATATCAGGTGATGGTGAA AAAGGTACCTGATGAACTGGCTGTTGCGGCATCAATGGCAGAAAACGAACAGCAGATGGCAATGCATCCG TCTGAACAGATCGCCGGGTTCCGCACACTGGCAGAGCAGGGGAAAACCCCCGCGCAGATTGGCGATTTAC TGGGGTTCGGTACGCGTCATGTTCAGCGCATGTTGAAACTGACCGAACTGGCTCCCGAAATTCTGGCGGC GCTGGCGAAGGATGAAATCACCACCGAACACTGCCAGGCACTGGCGCTCGAAAGCGATCAGAAACGCCAG GTGGAAGTGCTGGAATCCGCCCGCAAACGGTCCTGGAATAATGAAGTATCAGTTTCCTCGATCCGTAACC TCATTATCTCAGAAGAGGTTTCCACAAACGGCGACAAATTCCGCTTTGTGGGAGAGGCCGCATTCAGTCC GGATGAAATCCGGGTTGATCTCTTCAGCAGCGAAAACGGCGGCTATGTCAAAAGTGCATCGCTCGATACC GCCCTGCTGGAAAAACTGCAGAACATCGCGGAGCACCTCCGCGAAGCGGAAGGCTGGTCATGGTGTGATG GTCGTCTTGACCCGATTTCACACTACGGGAAGGACACTAAAATCTGGCGCCTGCATGCTGTCCCGCCTGT GGAATATACCGAAGCCGAATCAGAACGTCTTGCGGAACTGGAAGCTCTGGAAGCTAAGTATGAAGACGAG AACCCCGGCGTGAATGATGACGTCGTGGCCGGGGCTCTGGAAGCCGTCTGGGAAGAACAGCAGACCATCG CGCACCGGGCAAAACACCGGGCATGGACGGATGAAATGAAGCAATCTGCCGGAGTGGTGGTTTCCTGGAC TGGCCAGGAGGTGAAAGTACAGCGCGGTGTGGTGCTGTGCGCCGATGAAAAAATGGAGGAGAAGGATGCA TCCACCGATCTGGCCCCTGAAAAAGTCGATCCGCTGGACGCCGTCAGTGTCCCGTTGCTGACCCGCCTTT CTTCTGAACGCACACTGGCGGTTCAGGCGGCCCTGTTGCAGCAGCCGCAGAAAGCCGTCGCGCTGATGGT CTGGAAAATGTGTAACTCGGTTTTCCATACCACAACGTCCGTCAAAGAGCCGTTCTGCATTAGCGTGAGT GTGTCGCATTACGCGCTGACCCGTGAAGCACCTGACGGTGAAAACAGCGTTGCGTTTCAGGCCATCCAGT CAGAAAAAGAACGTCTTGAAGCCCTGCTGCCGGAAAACTGGCGAAAGGATATGACCACCTTCTTTACGCT CGATGGCGCAACCCTGATGGCACTGATGGCTTTCTGCACCGCCTGCTCCATAGATGGTGTACAGGGCAAG GATGAATTTGGTCGTAAACACCAGAGTTCGCTGGATGGGGTGGAAAACGCCATTCAGTTTGACCTTCGTG ACTGGTGGAAACCGACGGCTGATAACCTTTTCTCGCACATGAAGCTGCCACACATTGTACAGGCACTCTC TCAGGCCGGACTGGCTGGCGCAGCACAGGACGCCGCGAAGATGAAGAAAAAGGATGCCGCTGAACATGCA GAGCACTTCCTCTCAAAAATCCGTTGGGTTCCGGAATGGATGACCAGTGCTGACAATCAGAAACAGCCTG CCGCAAAGTCTGAACTCAGTCTGGCAACAAGTCAGAACGATACCGACGCTGATGCCGGCGACGTCACCGA CCATAACAACCCGGCCTGCGCCGCCTGATAACGGAGACGCCGCCCTGCGGGGCGGCGATAAGGAGACTGA AAATGAAAACGTTACTGACTCTGGATGTCCTGAAAACCATGTCTTCTGATGAGCTGGAAGACTACCGCGC CGCCGGTGAAGACTTTCGCCGGGAGCTGAGTCACGCTGTCATGCGCGATCTGACCTCACCGTCCGGCTGG TCCGTGAATGCCGAATACCGGTGCGAATTTGGCGGCTTCTTTCCTGTCCAGATCCGTTTTACCCCCTCTC ATGGTCACTTTGATGTGGCGGTATGCAGTCCGGGGGAGCTGAATCCTCGCTGGATAGTGGTCTTTGTTAC CCGTGACGGTCAGCCGTTCTCTGTCGTTCGCGTGATGGATGCATTCAACCCTGAACTCATCACCCATACT CTGGATCTCATCGAGTGTCTTGACGCCGGTGGCTACTCGTTTGCCAGCATCATCAGCACGCTGTCACAGG AGGGCGCACAATGATCCCGTCATCCAGTGCTCTTGTATCCCTGAAACCAGCCCGTCAGGCAGCGCTGCAG GCCATCATGACGGTGGAAGAGGCTCGCCAGCGCGGCGCACGTCTGCCATCGATGCCACACGTCCGGACAT TCCTGCGCCTGCTGACAGGCTGTAGCCGGATTAACAGTGACGTTGCCCGCCGTATTCCTGGCCTTCACCG TGATCCAAAAGACCGCCTTTCCAGCCTGAAACAGGTGGAAGAGGCGCTGGAGATGCTTATCTCCAGCCAC GGGGAATACTGTCCGCTGCCGCTGACAATGGATGTGCAGGCTGAACTTTTTCCGGAAGTCCTTCATACCC GAACAGTACGCAGGCTAAAACGTCAGGACTTTGCCTTCACCCGAAAAATGCGCCGTGAAGCCCGTCAGGT CGAGCAGTCCTGGTTACTGCGTCAGAACCTGCTGGGACAGGCTGTCACAGAACTGAATTTTCAGTCACCG GAAACCGTCTGCACCTGGTACACCCGGTGGAGCGACGAGTTTGACGCGGCAGAGCTTGCAGCACCGTTCT GGCGCTGGCAGTCGCGATTCACATCGCTGAAGGAACTGGACTGGCTTCGCATCAGCGGTGAGCCGCTGTA TGCAGTGATGTACGAAATTCCGTTAATTGTCCGGGAAACACCTGAACATATTCGTGTTGCTGAACGCTGG CAGGTGCCAAATAAGCTGGCTGATCGGAGTGGTGTATGAAGTGGCGCTATTCTCTGCGCTGGAAACTGCC GCACAGGCCCTGCCCGGGTCCACGGGAACTGATTTCCGTTGTCGTGGAGGCAGGGCAGGCGGCACCTGAA GAGGTGATGTCACGCTGGGTGGCTGGCTCAGGTTACGCTGTATGCGTGGATTTTCTCGGCCAGAAACAGA TCCAACGCTGGAGCGATGAACGGAAAGCTGCGGTGAGAAGGCGCAACATGCAGGCTCGTATTCATCGTGT TGCCCCTTTGTTTGCCGACGAGTTAATCGAGCGTGAACTGGCTGCGCGTCCGGAGTATTTCAATGGCAAG TCCGCCCGATGAATAAGTACAATGCTGTCTGACAACTCAGATGGCCAAATACAAGGAAAGCAGAACTATG AGGTACTGGTTGCTCGTTATCTTAATGAACGTGCTGTTCTGGTTGATCGTGAAGCATGTTGCTCCGGAAT GGTATGGTTCCCCTGGTTATTATGCAGGCCAAATCATCTGCACACTAATAGCTGCGGTCATCACATGGCG TGATCCGCCTGACTGGTTAGGGAAGGTGCGAATAAGCAGGTCATTTCTTCCCAAGCTGACTCGCTGATTA AAATTTCGCGGATCTGGGCCGATTTTTTTCCCGCAAACACATCGAATCAGCCTATTTAGGCTATTTTTTC CACCATTTCTGGCGTTATTTCCGGTTTTTACTGAGATCTCTCCCACTGACGTATCATTTGGTCCACCCGA AACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCCTGTATCTGGCTT TCACGAAGCCGAACTGCCGCTTGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCAT GTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATGCTGCTTCAAGGTTTTTACCTTGCCGGGACGC TCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCAT CGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGC GGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGC CACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGG GTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCG ATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAATTCATGATGGTG GTGCGATCCGGCAGGGCGCTATCCAGGGATAATCGGGCAAACAGGCGCATGGAGGCGATTTCGTACAGGG CATCTTCCATGGCACCGTCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATACGCAGCATGGTCTCCAG CGGATAGGGCCGTCGGCCATTGCCCGCCTTGGGATAAAACGGCTCGATGACAGCGGTCATATTCTGCCAT GGCAGAATCTGCTCCATGCGGGAGAGGAAAATCTCTTTTCGGGTCTGACGGCGCTTAGTGCTGAATTCAC TATCGGCGAAGGTGAGTTGATGGCTCATGATGTCCCTCTGGGATGCGCTCCGGATGAATATGATGATCTC ATATCAGGAACTTGTTCGCACCTTCCCTTAAAGACCAGAGGTAACGCAAAATGAAAGTATACGGCCATCA ACACTCATCAGAGGTTTTCTCCCGGGAAACTTCCCCATCCTGTTTTGAACCAAAAGCGGAAAAGGTGATC GCTTTTCATGGAAAGGATGCCAGTTACGCCTATAACGTGCTGGCCGATCTGAAAGCCGCAGGTGCTTCAT ATACGCGCCGGAATATCATCGCCGATATGTTCCGCCGTCTGGGTGTGGAATGAGGTCTGGGCAATGGAAC ACGTGAAAAGACAAATCCAGCAGGGGGCAGGGAACGCCTATTATGCGGGGATGCAGTGGCGCGGTATTAC ACTCGGACACGCCGATGCTGCAGCGCTTAATCAGTTTGATATCGATATCAGCAAAGCTCAGGCACCCGAA GCACGCACCTGGTTGCTTCAGAACAAAGCGGAATTCATAGCTCTTATGCTGGGTATTGAGATTGTAAAGA TCGGGTAGTGAGAAGTCAGCTAACTTAGCTCTTGAGCTAAGTTAGCTTTTAAGCTAACGTATACACATAC GGACTAGAGATTACATTCATGTTCACAGTCATCTTTCATGATGAGGCTGAAAAAGAGTTTACGGCTCTGC CTGCTGCCATTCGTGCAAAAATGGCCAGGCTACTCATGAAGCTGGAAGCAAACCCTCGCCAGCTACGCGA GCCAGATACCAAGCCGCTTGGAAACGGCCTTTTCGAAATACGTACAATGGGGGCAGATATCGCCCGCGGA ATCTGGGTATATCAGAGTGGTGAACGTATTTTTCTACTTCGGATCTTTATCAAAAAATCGCCAAAAACGC CCCCGGCAGAAATAGATCAGGCACTTCGCAGACTGGAGGAAATGCAGAATGAAATATAAAACCCTTAGCC AGGTTCATACCGAAGCAATGAACGATCATGAGTACAGCGCGGCATTCGAGGCAGAAGAAGCCTCGGAGCT ACTTCGGGAAACCTTAGCAACATGGAGAAAAGAAGCGGGTTTGACGTCGGCACAGGTTGCAGAACGTATG GGCATCAAAGCGCCTACTATCTCACGTATGGAGAAGAACGCTTCGCGAATGAGTATTCAGACGCTGGTTC GGTACGCCAGAGCCTGCGGTGTTAACTTTAAAATTCAGCAGGTTTGAATGATTAGCGATGCCAATAAAGC GGTGAATGACCTGGCGAGTATTGTCCCTCTGCTGGGTGGCAGTTCGTCCCGCAAAGATTACGAAGAGGCA CGTAAACTCGTTGAATATCTTCTGGAACATGATCCGGACAGCCCGCTGGTTGATATGCTGACTGCCCGCA TCGATGCCTGGGAAGATAACGCGGTGGAATTTGAAGAATTTAATACGCGCATCGAAGCTGGTAAAAACGG TGTATCGTTGCTGCGGGTTCTTATGCAGCAACGCGGTTTTTCACAGTCCGATTTTGAAAACGAGATAGGC AACAAATCACTCGTCAGCCGGATCCTCAGTGGTGAACGCAGTCTGACCCTCGATCACATGCGGGCGCTGG CAAATCGATTTCAAATCCCGGTCTCGATGTTTGTTGACTGATTCGGGAACAGAGCAGGCGAAGGGGGCAT CGGTCCCCGTCTGGCCGCGCCTCGAAAGACCGCGCGCCTGCGGCGCCGGGAAAACCGGGCCGCGCTGACG CGCCGCCCGCATTTCCTTTCCGCGTCTTCCCTGTTTGCTGCCTGCTGTCTGTCTGCTTCCTCTTCTCCTC CCTGCTGTGATGTCTCTTTTTAACCCTTAAAGGCTTTAAAAGCACACCCATACTGGACACCTTCGGCTCC CGGCCAGCTGCGCTGTCCGGTCGTCGAGCCACACTCCGCTAACCGCGAAAAGACGCGGTAAGCTCCGCCG AACCCGCAAGCGGTTTCGGGCCTGACGGCTAGTGTCTGATGTCTGACGTCAGGGTCAACGGCAGTGCTTG CTGCGACCGTCCCGGTCGCGCCGCTTTCACCGTGCCGGCGAAGGACTGCCGGCACTCTGCGGGGCAACGC CGTTTCGCGCCCGCGCTCTTCGTCGTTGCGGCGGGTGCCTGCTCCTTTCCCCTGGTACCCGTATCACCCG TTTGAGTCCATTCGCCGGGGCTGAGACAAGCACAACCCGTCTTGCTGTCCAGGGGACGGCAGGGCCTTTC GCAATAAATTTTTCCCGGCCATTCCGCTGCAGCTTCATTAGGCCGAAAAAAATTTCCCGCTCACCCCCGG ACATCTGCACCGGGCCGTGCTCGTTTACGCCCTCGCGGCGAACGGCTCTCAAACGGGTGAAGGTTATATC CAGGGGGCAGGTTCAGCAGGTCCCCGCACAAAGTCAAAACCGCGGCCCCGGCAACTCAACGGGTGATGGT TAAAAAATTAAACAGGTGAAGGAGAATAATATGCGTTTAGCATCCCGATTTGGACTTACTCATTCCATTC GTCAGGAACGCCCACTGACTAACGATGAATTAGTCAAGGTTGTACCTTCTGTGTTTTCAGAAGAAAAGCA TAATTCACGTAGTGATCGCTATACCTATATTCCAACCATTACACTGCTGGATAAATTACGTGAAGAAGGT TTCCAGCCATTTTTTGCCTGTCAGTCACGAGTAAGGGATGAGGATAAACGGGGGCATACTAAGCATATGG TAAGACTTCGCCGTGAAGGGGCCAATAAAGGAACAGAAGTACCCGAAATCATTCTTCTTAACTCGCATGA TGGATCGTCCAGTTATCAAATGATCCCGGGTATGTTCCGTTTTGTATGCACAAATGGCCTTGTGTGCGGT ACGTCGTTTGGTGAGATTCGTGTACCTCATAAAGGTGATATTGTGGGAAGGGTTATCGAAGGTGCTTACG AAGTTCTGGGAATTTTCGATAAAATAACTGAAGGCGTTGATGTCATGAAGTCTATTGCCTTAACCAAGGA AGAACAGCGTCTGTTTGGACAAGCTGCATTAACCTACCGATATGAAGATGAAAATAAATCTCCGGTCAGT ATTGAACAGATAATTCATCCGCGCCGTTATGAAGATAAAAAAGATGACATCTGGACTACATATCAAAGGG TCCAGGAAAATCTGATTAAAGGCGGTTTGCCTGGCCGAACTGAAAAAGGGAAAAGAACAACAACCCGGCC AGTAAAAGCAATCGATGGTGATGTTAAACTCAATAAGGCATTGTGGTTAATTGCGGAGAAATTCCGCACT CTTAAAGGCTAA
Region Details
| Region | 2 |
| Region Length | 8.2Kb |
| Completeness(score) | incomplete(30) |
| Specific Keyword | recombinase,transposase |
| Region Position | 18241-26442 |
| # tRNA | 0 |
| # Total Proteins | 12 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 3 |
| Phage + Hypothetical Protein % | 75% |
| # Bacterial Proteins | 3 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_N15_NC_001901(2) PHAGE_Klebsi_phiKO2_NC_005857(2) PHAGE_Shigel_POCJ13_NC_025434(2) PHAGE_Shigel_Stx_NC_029120(2) PHAGE_Bacill_BMBtpLA_NC_028748(1) PHAGE_Gordon_Nyceirae_NC_031004(1) PHAGE_Cronob_vB_CsaM_GAP32_NC_019401(1) PHAGE_Strept_phiARI0460_1_NC_031913(1) PHAGE_Gordon_Hedwig_NC_031099(1) PHAGE_Rhodov_vB_RhkS_P1_NC_031059(1) PHAGE_Rhodob_RcapNL_NC_020489(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 16.66% |
| GC % | 53.29% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|CP012566.1| Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-5, 127690, gc%: 52.92%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 14 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 1721..2926 | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM277_27850; phage(gi100009) | 0.0 | Showinfo_outline |
| 2 | 2926..3900 | PHAGE_Entero_P1_NC_005856: ParB; AM277_27855; phage(gi46401681) | 3.13e-114 | Showinfo_outline |
| 3 | complement(3982..5253) | PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; AM277_27860; phage(gi431811050) | 0.0 | Showinfo_outline |
| 4 | complement(5253..5684) | PHAGE_Cronob_ENT39118_NC_019934: protein umuD; AM277_27865; phage(gi431811072) | 5.10e-34 | Showinfo_outline |
| 5 | 5918..6889 | PHAGE_Entero_P88_NC_026014: recombinase; AM277_27870; phage(gi744692717) | 3.15e-77 | Showinfo_outline |
| 6 | 6892..7563 | Mediator of plasmid stability; AM277_27875 | 0.0 | Showinfo_outline |
| 7 | 7626..7856 | hypothetical protein; AM277_27880 | 0.0 | Showinfo_outline |
| 8 | 8293..8994 | PHAGE_Staphy_Stau2_NC_030933: hypothetical protein; AM277_27885; phage(gi100063) | 7.28e-28 | Showinfo_outline |
| 9 | 8994..9215 | PHAGE_Entero_N15_NC_001901: gp50; AM277_27890; phage(gi9630517) | 6.40e-06 | Showinfo_outline |
| 10 | 9225..9644 | adenine-specific methyltransferase; AM277_27895 | 0.0 | Showinfo_outline |
| 11 | 9698..10465 | hypothetical protein; AM277_27900 | 0.0 | Showinfo_outline |
| 12 | 10537..10893 | hypothetical protein; AM277_27905 | 0.0 | Showinfo_outline |
| 13 | 11145..11573 | PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; AM277_27910; phage(gi162135127) | 1.34e-12 | Showinfo_outline |
| 14 | 11616..12122 | PHAGE_Rhodoc_CosmicSans_NC_028677: ArdA; AM277_27915; phage(gi966199624) | 2.20e-12 | Showinfo_outline |
Sequence
>1721..2926
KlebsiellapneumoniaeMDNIEQLRKVATRAGKLLTSLSESIRQQKEELKLTEFYQEYSKAALYKLPKLSKGSVEYAVAEMEAGGYIFKKKPSGNTMKYAMTIQNVIDLYNHRKVPKYRDRFDKAFTIFVCNLKGGGSKTVSTASLSHAFRAHPQLLFEDLRILAIDFDPQASLTMFLSHENSVGLVENTAAQAMLQNVSREELLSDFIVPSIIPGVDVIPASIDDAFLAEGWKGLCEEHLPGKNIHAVLKENIIDKLQHDYDFIFLDSGPHLDAFLKNCIGAADLMLTPLPPATVDFHSSLKFVASLPALIDSIEMDGHTCNLIGNVGFMSKILNKSDHKICHSQAKEVFGADMLDMVLPRLDGFERCGETFDTVISANPATYDGSTEALKSAKSAAEDFAKAVFDRIEFIRTNGGM
Sequence
>2926..3900
KlebsiellapneumoniaeMSNEKRKTIGRQLNTQASIAEMTDTGRSQVFTLKTGRKVTFRFVRVPASEVESKTFVNQENNGRDQLALTRESLKSIIQTIKFQQFFPCIGIKQSERIEILDGSRRRASAIFVRTGLDVMVTEEHLSADEARQLAKDIQTAKEHNLREIGLRLIALKESGFNQKEIAELEGLSQAKVTRALQAAAVPQDLISLFPVQSELSFSDYKLLLEVNEKLSEKGLTPEELIQAVSAQLDAILNDGERPEDEQKASILKLISQASQALIDPSPKEKSVVSPLWSFEEKDKFARKRVKGRTLTYEFSRMSKVIQDELDKAINEVLDRNLSQ
Sequence
>complement(3982..5253)
KlebsiellapneumoniaeMFALADVNSFYASCERVFRPDLKGKPIVVLSNNDGNVIARSAEAKPWIKMGTPWFQIKNERYPEKIYAFSSNYELYASMSARVMNCLEELAPRVEQYSIDEMFLDLTGVEHCMGLEDFGRQLRQHVYDCTRLTIGVGAGPTKTLAKSAQWASKEWKQFRGVLALTRGNPQRTRKLLSLQPVEEIWGVGNRIARKLNVLGIKTALDLALTNPAFIRKNFSVVLERTVRELNWESCLSLEEAPPTKQQIVCSRSFGVKITEYESLRQAICQHAERASEKLRKEHQYCRHISVFIKTSPFAIKGPYYGNVATEKLLTPTQDTRDIIAAATTALERIWRDGHRYAKAGVMLNDFTGSGVSQLQLFDERPPRPHSAELMRVLDGINNSGLGKVWFAGRGMASEWQMKREMLSPAYTTRWSDIPAAKLA
Sequence
>complement(5253..5684)
KlebsiellapneumoniaeMKLQLFSTGKELPPQAHPLFADLASCGFPSPAADYVESDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVVASVQGEFTVKRLLLTPRLTLQPMNASWSPIYPDPDELDIFGVVTHIIHRPREMY
Sequence
>5918..6889
KlebsiellapneumoniaeMNIYCDDGSTNVKLAWFEGDELQTRVSANSFRHGWKVAEFSAATFNYQVGTLKYTWDSVSRDAIPTTNVEYQYGDLNLLAVHHALLNSGLEPQPVSLTVTLPLSEYYDGDCQRNEENIRRKRENLMRELVLNKGRAFTVTDVKVMPESLPAAFSRLAELKPGPAETTLIIDLGGTTLDAGVIVGQFDDISAVHGNPSVGVSQVTRAAAGALRAADSETSALIADTIIRNRNDRQYLQRVINDAGKIDEVRNKITEAITSLGARVTSELTAFRNVNRVFLVGGGASLIEEAIRQAWPLAHDRIEVIGDPQMALAREIALYNKED
Sequence
>6892..7563
KlebsiellapneumoniaeMPDGQYSFYLHSDDRTDIAAMATISTISQPLRGEFIRTAATAGAVVYQVDARLPALIPVFFAGQLSAVRLCAVMALVSGTWSSLTGLPDEPENGGAALPVSPETEYQRRRYTLTLQNGRSGERVESVLTEASSRLRGDLLRNLIITGLALHTTAPELPRLLASMPVPPTSVSELQALVQQMAGTADVNRAAAAVPDTPAASAAPVSGADTREIKKNMRRAFGD
Sequence
>7626..7856
KlebsiellapneumoniaeMSPGFRNVLRLARIPVDSSEPVRRKFGSRLIGIVTVCLLPLLVFDVPQWVFILSQVIWGAGVYIGLSLAGDKSLNR
Sequence
>8293..8994
KlebsiellapneumoniaeMSRFILGNCIDVMRGFPDRAVDLIVTDPPYLVGFKDRQGRQIAGDVTDEWLQPATLEMYRVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYTGNTLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAGTERLDAMHRAVNTPAANDEWLPEAA
Sequence
>8994..9215
KlebsiellapneumoniaeMNYDGHEALRRDMAGLANNLCDLKTTLKVLEDTYHYRYDGLAERLAGISLRRLSVLMDEAFNIALMLDESFLD
Sequence
>9225..9644
KlebsiellapneumoniaeMYGTREDLCRMLNEQYPAETPLNLIIWTPADIEALADGMEYSFSEHDVRAVLERMDTIPEEQRLESGVSAGLVMALIDQVKENGQRVTVPVDLLETLLITAEQALWDREWTARDRNLPVPESVMRRLADTAKVRALLKS
Sequence
>9698..10465
KlebsiellapneumoniaeMMKKETLNTLILRHGDRMLRQAGWPDTVDMAPVAPETVPGWLAACGSLSGVEILTLTEQLCQPLTYGRAALLLASARRLAGTPARLHLFPVQAYPHPERLADCQVIRLPYAQEWLTAAECDDLLAFLKASLTQISEIVHRDTKRIAAALTPSVNPRLMDRRIGDWRLLAVEYDHDNCLDEDETDRLDQVLDAILIRDARFCPVLLTLVNEREETIRSAGVIADQLRFTDTPVRRWFDRRVLREMVREARASRTQE
Sequence
>10537..10893
KlebsiellapneumoniaeMSPCRLRVHPARFPGLLGEHNPLLSPCRVLALPCLHFSPAAAEAGVRWRRHPRIRQSPACRCRRLRFTRPHPSGPRPYYCVCRVATSASAFLPVVEKRGRETLYSTSCIATGCAVPSL
Sequence
>11145..11573
KlebsiellapneumoniaeMQYVNTCPVLNVEECDRLSFMPYLFGTDFMLAELQVYALAKKWMPGYEGGFWHFIRLPEGGGYMMPDCGRVHLVSSENWFDRTVSADAAGIILTSLAINRRLAAHHDSSNPALTRLYMLRDAQLWNHITFHPECSAIYAALD
Sequence
>11616..12122
KlebsiellapneumoniaeMTSSVTVPAVYVGTYHQYNGGSIFGKWFDLTDFDDEDEFYDACRALHAAEDDPEFMFQDWEGIPSQFASESSVKWAFIEAFLQAQDEGRAAAFVAWADYTGECDYDAFDEAYCGEAESEEDFAYGFVEDHGLLNEVPESLRVYFDYEAYARDLFSSGYVFHEGYVFSN
Region 2, total 12 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 18241..20298 | PHAGE_Gordon_Hedwig_NC_031099: RNA polymerase binding protein; AM277_27970; phage(gi100054) | 1.07e-06 | Showinfo_outline |
| 2 | 20343..20774 | plasmid SOS inhibition protein B; AM277_27975 | 0.0 | Showinfo_outline |
| 3 | 20771..21499 | recombinase; AM277_27980 | 0.0 | Showinfo_outline |
| 4 | 21496..21822 | PHAGE_Rhodob_RcapNL_NC_020489: hypothetical protein; AM277_27985; phage(gi461475014) | 4.51e-17 | Showinfo_outline |
| 5 | complement(22188..23168) | PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; AM277_27995; phage(gi971482498) | 0.0 | Showinfo_outline |
| 6 | 23261..23473 | hypothetical protein; AM277_28000 | 0.0 | Showinfo_outline |
| 7 | 23484..23708 | hypothetical protein; AM277_28005 | 0.0 | Showinfo_outline |
| 8 | 23789..24109 | PHAGE_Entero_N15_NC_001901: gp49; AM277_28010; phage(gi9630516) | 7.77e-23 | Showinfo_outline |
| 9 | 24099..24377 | PHAGE_Entero_N15_NC_001901: gp48; AM277_28015; phage(gi9630515) | 7.11e-14 | Showinfo_outline |
| 10 | 24378..24791 | XRE family transcriptional regulator; AM277_28020 | 0.0 | Showinfo_outline |
| 11 | complement(24687..24902) | hypothetical protein; AM277_28025 | 0.0 | Showinfo_outline |
| 12 | 25621..26442 | PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: hypothetical protein; AM277_28030; phage(gi414086954) | 3.67e-58 | Showinfo_outline |
Sequence
>18241..20298
KlebsiellapneumoniaeMSATESKVKTAPKTSKKTLKSAEAEALKVALDAAQVEYVPVTALVKSPLNVRTIPYPAEKVCSMADSIEAIGLLQNLVVHNLPDGRCGVAAGGRRLKALQLLQSENRIDAGYQVMVKKVPDELAVAASMAENEQQMAMHPSEQIAGFRTLAEQGKTPAQIGDLLGFGTRHVQRMLKLTELAPEILAALAKDEITTEHCQALALESDQKRQVEVLESARKRSWNNEVSVSSIRNLIISEEVSTNGDKFRFVGEAAFSPDEIRVDLFSSENGGYVKSASLDTALLEKLQNIAEHLREAEGWSWCDGRLDPISHYGKDTKIWRLHAVPPVEYTEAESERLAELEALEAKYEDENPGVNDDVVAGALEAVWEEQQTIAHRAKHRAWTDEMKQSAGVVVSWTGQEVKVQRGVVLCADEKMEEKDASTDLAPEKVDPLDAVSVPLLTRLSSERTLAVQAALLQQPQKAVALMVWKMCNSVFHTTTSVKEPFCISVSVSHYALTREAPDGENSVAFQAIQSEKERLEALLPENWRKDMTTFFTLDGATLMALMAFCTACSIDGVQGKDEFGRKHQSSLDGVENAIQFDLRDWWKPTADNLFSHMKLPHIVQALSQAGLAGAAQDAAKMKKKDAAEHAEHFLSKIRWVPEWMTSADNQKQPAAKSELSLATSQNDTDADAGDVTDHNNPACAA
Sequence
>20343..20774
KlebsiellapneumoniaeMKTLLTLDVLKTMSSDELEDYRAAGEDFRRELSHAVMRDLTSPSGWSVNAEYRCEFGGFFPVQIRFTPSHGHFDVAVCSPGELNPRWIVVFVTRDGQPFSVVRVMDAFNPELITHTLDLIECLDAGGYSFASIISTLSQEGAQ
Sequence
>20771..21499
KlebsiellapneumoniaeMIPSSSALVSLKPARQAALQAIMTVEEARQRGARLPSMPHVRTFLRLLTGCSRINSDVARRIPGLHRDPKDRLSSLKQVEEALEMLISSHGEYCPLPLTMDVQAELFPEVLHTRTVRRLKRQDFAFTRKMRREARQVEQSWLLRQNLLGQAVTELNFQSPETVCTWYTRWSDEFDAAELAAPFWRWQSRFTSLKELDWLRISGEPLYAVMYEIPLIVRETPEHIRVAERWQVPNKLADRSGV
Sequence
>21496..21822
KlebsiellapneumoniaeMKWRYSLRWKLPHRPCPGPRELISVVVEAGQAAPEEVMSRWVAGSGYAVCVDFLGQKQIQRWSDERKAAVRRRNMQARIHRVAPLFADELIERELAARPEYFNGKSAR
Sequence
>complement(22188..23168)
KlebsiellapneumoniaeMSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVKTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYRGLLKNDNQLAMLFTLANLFRVDQMIRQWERSQ
Sequence
>23261..23473
KlebsiellapneumoniaeMKVYGHQHSSEVFSRETSPSCFEPKAEKVIAFHGKDASYAYNVLADLKAAGASYTRRNIIADMFRRLGVE
Sequence
>23484..23708
KlebsiellapneumoniaeMEHVKRQIQQGAGNAYYAGMQWRGITLGHADAAALNQFDIDISKAQAPEARTWLLQNKAEFIALMLGIEIVKIG
Sequence
>23789..24109
KlebsiellapneumoniaeMFTVIFHDEAEKEFTALPAAIRAKMARLLMKLEANPRQLREPDTKPLGNGLFEIRTMGADIARGIWVYQSGERIFLLRIFIKKSPKTPPAEIDQALRRLEEMQNEI
Sequence
>24099..24377
KlebsiellapneumoniaeMKYKTLSQVHTEAMNDHEYSAAFEAEEASELLRETLATWRKEAGLTSAQVAERMGIKAPTISRMEKNASRMSIQTLVRYARACGVNFKIQQV
Sequence
>24378..24791
KlebsiellapneumoniaeMISDANKAVNDLASIVPLLGGSSSRKDYEEARKLVEYLLEHDPDSPLVDMLTARIDAWEDNAVEFEEFNTRIEAGKNGVSLLRVLMQQRGFSQSDFENEIGNKSLVSRILSGERSLTLDHMRALANRFQIPVSMFVD
Sequence
>complement(24687..24902)
KlebsiellapneumoniaeMRAARQRGPVFPAPQARGLSRRGQTGTDAPFACSVPESVNKHRDRDLKSICQRPHVIEGQTAFTTEDPADE
Sequence
>25621..26442
KlebsiellapneumoniaeMRLASRFGLTHSIRQERPLTNDELVKVVPSVFSEEKHNSRSDRYTYIPTITLLDKLREEGFQPFFACQSRVRDEDKRGHTKHMVRLRREGANKGTEVPEIILLNSHDGSSSYQMIPGMFRFVCTNGLVCGTSFGEIRVPHKGDIVGRVIEGAYEVLGIFDKITEGVDVMKSIALTKEEQRLFGQAALTYRYEDENKSPVSIEQIIHPRRYEDKKDDIWTTYQRVQENLIKGGLPGRTEKGKRTTTRPVKAIDGDVKLNKALWLIAEKFRTLKG
Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-5
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 127690 bps
Phages: 2
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: AM277_27850 (Region 1)
Locus: AM277_27850ORF Start: 1721
ORF Stop: 2926
Strand: Forward
Protein Sequence: MDNIEQLRKVATRAGKLLTSLSESIRQQKEELKLTEFYQEYSKAALYKLPKLSKGSVEYAVAEMEAGGYIFKKKPSGNTMKYAMTIQNVIDLYNHRKVPKYRDRFDKAFTIFVCNLKGGGSKTVSTASLSHAFRAHPQLLFEDLRILAIDFDPQASLTMFLSHENSVGLVENTAAQAMLQNVSREELLSDFIVPSIIPGVDVIPASIDDAFLAEGWKGLCEEHLPGKNIHAVLKENIIDKLQHDYDFIFLDSGPHLDAFLKNCIGAADLMLTPLPPATVDFHSSLKFVASLPALIDSIEMDGHTCNLIGNVGFMSKILNKSDHKICHSQAKEVFGADMLDMVLPRLDGFERCGETFDTVISANPATYDGSTEALKSAKSAAEDFAKAVFDRIEFIRTNGGM
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM277_27850, hypothetical protein, phage(gi100009), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 0.0
Locus 2: AM277_27855 (Region 1)
Locus: AM277_27855ORF Start: 2926
ORF Stop: 3900
Strand: Forward
Protein Sequence: MSNEKRKTIGRQLNTQASIAEMTDTGRSQVFTLKTGRKVTFRFVRVPASEVESKTFVNQENNGRDQLALTRESLKSIIQTIKFQQFFPCIGIKQSERIEILDGSRRRASAIFVRTGLDVMVTEEHLSADEARQLAKDIQTAKEHNLREIGLRLIALKESGFNQKEIAELEGLSQAKVTRALQAAAVPQDLISLFPVQSELSFSDYKLLLEVNEKLSEKGLTPEELIQAVSAQLDAILNDGERPEDEQKASILKLISQASQALIDPSPKEKSVVSPLWSFEEKDKFARKRVKGRTLTYEFSRMSKVIQDELDKAINEVLDRNLSQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM277_27855, ParB, phage(gi46401681), PHAGE_Entero_P1_NC_005856
Homolog/Ortholog E-Value: 3.13e-114
Locus 3: AM277_27860 (Region 1)
Locus: AM277_27860ORF Start: 3982
ORF Stop: 5253
Strand: Backward
Protein Sequence: MFALADVNSFYASCERVFRPDLKGKPIVVLSNNDGNVIARSAEAKPWIKMGTPWFQIKNERYPEKIYAFSSNYELYASMSARVMNCLEELAPRVEQYSIDEMFLDLTGVEHCMGLEDFGRQLRQHVYDCTRLTIGVGAGPTKTLAKSAQWASKEWKQFRGVLALTRGNPQRTRKLLSLQPVEEIWGVGNRIARKLNVLGIKTALDLALTNPAFIRKNFSVVLERTVRELNWESCLSLEEAPPTKQQIVCSRSFGVKITEYESLRQAICQHAERASEKLRKEHQYCRHISVFIKTSPFAIKGPYYGNVATEKLLTPTQDTRDIIAAATTALERIWRDGHRYAKAGVMLNDFTGSGVSQLQLFDERPPRPHSAELMRVLDGINNSGLGKVWFAGRGMASEWQMKREMLSPAYTTRWSDIPAAKLA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM277_27860, DNA polymerase, phage(gi431811050), PHAGE_Cronob_ENT39118_NC_019934
Homolog/Ortholog E-Value: 0.0
Locus 4: AM277_27865 (Region 1)
Locus: AM277_27865ORF Start: 5253
ORF Stop: 5684
Strand: Backward
Protein Sequence: MKLQLFSTGKELPPQAHPLFADLASCGFPSPAADYVESDLDLHDYCIRHPSATYYLRASGDSMADGSLYNGDLLVVDSAEKPRHGDIVVASVQGEFTVKRLLLTPRLTLQPMNASWSPIYPDPDELDIFGVVTHIIHRPREMY
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM277_27865, protein umuD, phage(gi431811072), PHAGE_Cronob_ENT39118_NC_019934
Homolog/Ortholog E-Value: 5.10e-34
Locus 5: AM277_27870 (Region 1)
Locus: AM277_27870ORF Start: 5918
ORF Stop: 6889
Strand: Forward
Protein Sequence: MNIYCDDGSTNVKLAWFEGDELQTRVSANSFRHGWKVAEFSAATFNYQVGTLKYTWDSVSRDAIPTTNVEYQYGDLNLLAVHHALLNSGLEPQPVSLTVTLPLSEYYDGDCQRNEENIRRKRENLMRELVLNKGRAFTVTDVKVMPESLPAAFSRLAELKPGPAETTLIIDLGGTTLDAGVIVGQFDDISAVHGNPSVGVSQVTRAAAGALRAADSETSALIADTIIRNRNDRQYLQRVINDAGKIDEVRNKITEAITSLGARVTSELTAFRNVNRVFLVGGGASLIEEAIRQAWPLAHDRIEVIGDPQMALAREIALYNKED
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM277_27870, recombinase, phage(gi744692717), PHAGE_Entero_P88_NC_026014
Homolog/Ortholog E-Value: 3.15e-77
Locus 6: AM277_27875 (Region 1)
Locus: AM277_27875ORF Start: 6892
ORF Stop: 7563
Strand: Forward
Protein Sequence: MPDGQYSFYLHSDDRTDIAAMATISTISQPLRGEFIRTAATAGAVVYQVDARLPALIPVFFAGQLSAVRLCAVMALVSGTWSSLTGLPDEPENGGAALPVSPETEYQRRRYTLTLQNGRSGERVESVLTEASSRLRGDLLRNLIITGLALHTTAPELPRLLASMPVPPTSVSELQALVQQMAGTADVNRAAAAVPDTPAASAAPVSGADTREIKKNMRRAFGD
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AM277_27875, Mediator of plasmid stability
Homolog/Ortholog E-Value: N/A
Locus 7: AM277_27880 (Region 1)
Locus: AM277_27880ORF Start: 7626
ORF Stop: 7856
Strand: Forward
Protein Sequence: MSPGFRNVLRLARIPVDSSEPVRRKFGSRLIGIVTVCLLPLLVFDVPQWVFILSQVIWGAGVYIGLSLAGDKSLNR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM277_27880, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 8: AM277_27885 (Region 1)
Locus: AM277_27885ORF Start: 8293
ORF Stop: 8994
Strand: Forward
Protein Sequence: MSRFILGNCIDVMRGFPDRAVDLIVTDPPYLVGFKDRQGRQIAGDVTDEWLQPATLEMYRVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYTGNTLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAGTERLDAMHRAVNTPAANDEWLPEAA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM277_27885, hypothetical protein, phage(gi100063), PHAGE_Staphy_Stau2_NC_030933
Homolog/Ortholog E-Value: 7.28e-28
Locus 9: AM277_27890 (Region 1)
Locus: AM277_27890ORF Start: 8994
ORF Stop: 9215
Strand: Forward
Protein Sequence: MNYDGHEALRRDMAGLANNLCDLKTTLKVLEDTYHYRYDGLAERLAGISLRRLSVLMDEAFNIALMLDESFLD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM277_27890, gp50, phage(gi9630517), PHAGE_Entero_N15_NC_001901
Homolog/Ortholog E-Value: 6.40e-06
Locus 10: AM277_27895 (Region 1)
Locus: AM277_27895ORF Start: 9225
ORF Stop: 9644
Strand: Forward
Protein Sequence: MYGTREDLCRMLNEQYPAETPLNLIIWTPADIEALADGMEYSFSEHDVRAVLERMDTIPEEQRLESGVSAGLVMALIDQVKENGQRVTVPVDLLETLLITAEQALWDREWTARDRNLPVPESVMRRLADTAKVRALLKS
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AM277_27895, adenine-specific methyltransferase
Homolog/Ortholog E-Value: N/A
Locus 11: AM277_27900 (Region 1)
Locus: AM277_27900ORF Start: 9698
ORF Stop: 10465
Strand: Forward
Protein Sequence: MMKKETLNTLILRHGDRMLRQAGWPDTVDMAPVAPETVPGWLAACGSLSGVEILTLTEQLCQPLTYGRAALLLASARRLAGTPARLHLFPVQAYPHPERLADCQVIRLPYAQEWLTAAECDDLLAFLKASLTQISEIVHRDTKRIAAALTPSVNPRLMDRRIGDWRLLAVEYDHDNCLDEDETDRLDQVLDAILIRDARFCPVLLTLVNEREETIRSAGVIADQLRFTDTPVRRWFDRRVLREMVREARASRTQE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM277_27900, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 12: AM277_27905 (Region 1)
Locus: AM277_27905ORF Start: 10537
ORF Stop: 10893
Strand: Forward
Protein Sequence: MSPCRLRVHPARFPGLLGEHNPLLSPCRVLALPCLHFSPAAAEAGVRWRRHPRIRQSPACRCRRLRFTRPHPSGPRPYYCVCRVATSASAFLPVVEKRGRETLYSTSCIATGCAVPSL
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM277_27905, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 13: AM277_27910 (Region 1)
Locus: AM277_27910ORF Start: 11145
ORF Stop: 11573
Strand: Forward
Protein Sequence: MQYVNTCPVLNVEECDRLSFMPYLFGTDFMLAELQVYALAKKWMPGYEGGFWHFIRLPEGGGYMMPDCGRVHLVSSENWFDRTVSADAAGIILTSLAINRRLAAHHDSSNPALTRLYMLRDAQLWNHITFHPECSAIYAALD
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM277_27910, hypothetical protein, phage(gi162135127), PHAGE_Pseudo_YuA_NC_010116
Homolog/Ortholog E-Value: 1.34e-12
Locus 14: AM277_27915 (Region 1)
Locus: AM277_27915ORF Start: 11616
ORF Stop: 12122
Strand: Forward
Protein Sequence: MTSSVTVPAVYVGTYHQYNGGSIFGKWFDLTDFDDEDEFYDACRALHAAEDDPEFMFQDWEGIPSQFASESSVKWAFIEAFLQAQDEGRAAAFVAWADYTGECDYDAFDEAYCGEAESEEDFAYGFVEDHGLLNEVPESLRVYFDYEAYARDLFSSGYVFHEGYVFSN
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM277_27915, ArdA, phage(gi966199624), PHAGE_Rhodoc_CosmicSans_NC_028677
Homolog/Ortholog E-Value: 2.20e-12
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Click on a sequence to see details.
Locus 1: AM277_27970 (Region 2)
Locus: AM277_27970ORF Start: 18241
ORF Stop: 20298
Strand: Forward
Protein Sequence: MSATESKVKTAPKTSKKTLKSAEAEALKVALDAAQVEYVPVTALVKSPLNVRTIPYPAEKVCSMADSIEAIGLLQNLVVHNLPDGRCGVAAGGRRLKALQLLQSENRIDAGYQVMVKKVPDELAVAASMAENEQQMAMHPSEQIAGFRTLAEQGKTPAQIGDLLGFGTRHVQRMLKLTELAPEILAALAKDEITTEHCQALALESDQKRQVEVLESARKRSWNNEVSVSSIRNLIISEEVSTNGDKFRFVGEAAFSPDEIRVDLFSSENGGYVKSASLDTALLEKLQNIAEHLREAEGWSWCDGRLDPISHYGKDTKIWRLHAVPPVEYTEAESERLAELEALEAKYEDENPGVNDDVVAGALEAVWEEQQTIAHRAKHRAWTDEMKQSAGVVVSWTGQEVKVQRGVVLCADEKMEEKDASTDLAPEKVDPLDAVSVPLLTRLSSERTLAVQAALLQQPQKAVALMVWKMCNSVFHTTTSVKEPFCISVSVSHYALTREAPDGENSVAFQAIQSEKERLEALLPENWRKDMTTFFTLDGATLMALMAFCTACSIDGVQGKDEFGRKHQSSLDGVENAIQFDLRDWWKPTADNLFSHMKLPHIVQALSQAGLAGAAQDAAKMKKKDAAEHAEHFLSKIRWVPEWMTSADNQKQPAAKSELSLATSQNDTDADAGDVTDHNNPACAA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM277_27970, RNA polymerase binding protein, phage(gi100054), PHAGE_Gordon_Hedwig_NC_031099
Homolog/Ortholog E-Value: 1.07e-06
Locus 2: AM277_27975 (Region 2)
Locus: AM277_27975ORF Start: 20343
ORF Stop: 20774
Strand: Forward
Protein Sequence: MKTLLTLDVLKTMSSDELEDYRAAGEDFRRELSHAVMRDLTSPSGWSVNAEYRCEFGGFFPVQIRFTPSHGHFDVAVCSPGELNPRWIVVFVTRDGQPFSVVRVMDAFNPELITHTLDLIECLDAGGYSFASIISTLSQEGAQ
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AM277_27975, plasmid SOS inhibition protein B
Homolog/Ortholog E-Value: N/A
Locus 3: AM277_27980 (Region 2)
Locus: AM277_27980ORF Start: 20771
ORF Stop: 21499
Strand: Forward
Protein Sequence: MIPSSSALVSLKPARQAALQAIMTVEEARQRGARLPSMPHVRTFLRLLTGCSRINSDVARRIPGLHRDPKDRLSSLKQVEEALEMLISSHGEYCPLPLTMDVQAELFPEVLHTRTVRRLKRQDFAFTRKMRREARQVEQSWLLRQNLLGQAVTELNFQSPETVCTWYTRWSDEFDAAELAAPFWRWQSRFTSLKELDWLRISGEPLYAVMYEIPLIVRETPEHIRVAERWQVPNKLADRSGV
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AM277_27980, recombinase
Homolog/Ortholog E-Value: N/A
Locus 4: AM277_27985 (Region 2)
Locus: AM277_27985ORF Start: 21496
ORF Stop: 21822
Strand: Forward
Protein Sequence: MKWRYSLRWKLPHRPCPGPRELISVVVEAGQAAPEEVMSRWVAGSGYAVCVDFLGQKQIQRWSDERKAAVRRRNMQARIHRVAPLFADELIERELAARPEYFNGKSAR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM277_27985, hypothetical protein, phage(gi461475014), PHAGE_Rhodob_RcapNL_NC_020489
Homolog/Ortholog E-Value: 4.51e-17
Locus 5: AM277_27995 (Region 2)
Locus: AM277_27995ORF Start: 22188
ORF Stop: 23168
Strand: Backward
Protein Sequence: MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVKTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYRGLLKNDNQLAMLFTLANLFRVDQMIRQWERSQ
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: AM277_27995, IS5 transposase and trans-activator, phage(gi971482498), PHAGE_Bacill_BMBtpLA_NC_028748
Homolog/Ortholog E-Value: 0.0
Locus 6: AM277_28000 (Region 2)
Locus: AM277_28000ORF Start: 23261
ORF Stop: 23473
Strand: Forward
Protein Sequence: MKVYGHQHSSEVFSRETSPSCFEPKAEKVIAFHGKDASYAYNVLADLKAAGASYTRRNIIADMFRRLGVE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM277_28000, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 7: AM277_28005 (Region 2)
Locus: AM277_28005ORF Start: 23484
ORF Stop: 23708
Strand: Forward
Protein Sequence: MEHVKRQIQQGAGNAYYAGMQWRGITLGHADAAALNQFDIDISKAQAPEARTWLLQNKAEFIALMLGIEIVKIG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM277_28005, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 8: AM277_28010 (Region 2)
Locus: AM277_28010ORF Start: 23789
ORF Stop: 24109
Strand: Forward
Protein Sequence: MFTVIFHDEAEKEFTALPAAIRAKMARLLMKLEANPRQLREPDTKPLGNGLFEIRTMGADIARGIWVYQSGERIFLLRIFIKKSPKTPPAEIDQALRRLEEMQNEI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM277_28010, gp49, phage(gi9630516), PHAGE_Entero_N15_NC_001901
Homolog/Ortholog E-Value: 7.77e-23
Locus 9: AM277_28015 (Region 2)
Locus: AM277_28015ORF Start: 24099
ORF Stop: 24377
Strand: Forward
Protein Sequence: MKYKTLSQVHTEAMNDHEYSAAFEAEEASELLRETLATWRKEAGLTSAQVAERMGIKAPTISRMEKNASRMSIQTLVRYARACGVNFKIQQV
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM277_28015, gp48, phage(gi9630515), PHAGE_Entero_N15_NC_001901
Homolog/Ortholog E-Value: 7.11e-14
Locus 10: AM277_28020 (Region 2)
Locus: AM277_28020ORF Start: 24378
ORF Stop: 24791
Strand: Forward
Protein Sequence: MISDANKAVNDLASIVPLLGGSSSRKDYEEARKLVEYLLEHDPDSPLVDMLTARIDAWEDNAVEFEEFNTRIEAGKNGVSLLRVLMQQRGFSQSDFENEIGNKSLVSRILSGERSLTLDHMRALANRFQIPVSMFVD
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AM277_28020, XRE family transcriptional regulator
Homolog/Ortholog E-Value: N/A
Locus 11: AM277_28025 (Region 2)
Locus: AM277_28025ORF Start: 24687
ORF Stop: 24902
Strand: Backward
Protein Sequence: MRAARQRGPVFPAPQARGLSRRGQTGTDAPFACSVPESVNKHRDRDLKSICQRPHVIEGQTAFTTEDPADE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM277_28025, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 12: AM277_28030 (Region 2)
Locus: AM277_28030ORF Start: 25621
ORF Stop: 26442
Strand: Forward
Protein Sequence: MRLASRFGLTHSIRQERPLTNDELVKVVPSVFSEEKHNSRSDRYTYIPTITLLDKLREEGFQPFFACQSRVRDEDKRGHTKHMVRLRREGANKGTEVPEIILLNSHDGSSSYQMIPGMFRFVCTNGLVCGTSFGEIRVPHKGDIVGRVIEGAYEVLGIFDKITEGVDVMKSIALTKEEQRLFGQAALTYRYEDENKSPVSIEQIIHPRRYEDKKDDIWTTYQRVQENLIKGGLPGRTEKGKRTTTRPVKAIDGDVKLNKALWLIAEKFRTLKG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM277_28030, hypothetical protein, phage(gi414086954), PHAGE_Cronob_vB_CsaM_GAP32_NC_019401
Homolog/Ortholog E-Value: 3.67e-58
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download