Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1062719507 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1062719507.PHASTER.zip
gi|00000000|ref|CP012572.1| Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-6.X, 163420, gc%: 51.75%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.5Kb | incomplete | 20 | 9 | 1620-10150 info_outline | PHAGE_Entero_P1_NC_005856(3) | 53.12% | Show info_outline |
Region DNA
>1 1620-10150 ATGGATACACTCAACCAGTGCATAAGTGCTGGTCATGAAATGACGAAAGCAATCGCCATTGCGCAGTTTA ATGATGACAGTCCGGAAGCCCGGAAAATAACCCGGCGCTGGAGGATTGGTGAAGCAGCTGATTTAGTTGG CGTGTCATCTCAGGCTATCAGGGATGCCGAGAAAGCTGGCCGGCTGCCTCACCCTGATATGGAAACCCGT GGAAGAGTTGAGCAACGCGTTGGTTATACCATCGAGCAAATCAATCACATGCGGGATGTATTTGGTACAC GACTGCGCCGTGCTGAAGATGCGTTTCCGCCGGTGATTGGTGTTGCTGCTCACAAAGGTGGTGTTTACAA AACCTCCGTTTCTGTTCACCTGGCTCAGGACCTGGCCCTGAAAGGATTACGCGTTCTGCTTGTCGAGGGT AATGATCCTCAGGGCACAGCCTCGATGTATCACGGATGGGTGCCCGATCTTCATATACACGCGGAAGATA CTCTCCTGCCCTTTTATCTTGGTGAAAAGGATGATGCCAGTTATGCGATAAAACCAACCTGCTGGCCTGG CCTTGATATCATTCCGTCCTGCCTGGCACTGCATCGCATTGAAACTGAACTGATGGGCAAATTTGATGAA GGAAAACTGCCCACCGACCCGCATCTGATGCTCCGCCTTGCTATTGAAACGGTCGCTCATGACTATGATG TGATTGTTATCGACAGCGCACCGAACCTCGGTATTGGCACGATCAATGTCGTATGCGCTGCTGATGTGCT GATTGTTCCCACCCCGGCAGAGCTGTTCGATTACACTTCTGCACTGCAGTTTTTCGATATGCTTCGTGAT CTGCTCAGGAATGTGGATCTTAAAGGCTTTGAGCCGGATGTCCGTATTCTGCTTACCAAATACAGTAATA ACAATGGTTCGCAGTCACCGTGGATGGAAGAACAAATTCGCGATGCATGGGGAAGCATGGTTCTTAAAAA TGTGGTACGTGAAACCGATGAAGTTGGTAAAGGCCAGATCCGCATGAGAACCGTTTTCGAACAGGCGATT GATCAACGTTCTTCGACCGGCGCATGGCGAAACGCACTTTCAATCTGGGAACCTGTTTGTAATGAGATTT TTGATCGTCTGATTAAACCACGCTGGGAGATTAGATAATGAAGCGTGCCCCTGTCATTCCAAGGCATACC ACACATACTCAATCGACTGAAGATACTTCATCACCGGCGCCGGCCGCGCCGATGGTGGATTCATTAATTG CGCGCGTGGGTGCTATGGCCCGCGGTAATGCTATCTCTCTTCCGGTATGTGGACGGGAAGTAAAATTTAC CCTTGAGGTGCTCCGGGGAGACTCTGTTGAGAGCGCCTCACGCGTATGGTCAGGAAATGAGCGTGATCAG GAACTACTTACCGAAGATGCTCTGGATGATCTCATACCTTCATTTTTACTGACCGGTCAGCAGACTCCAG CTTTCGGCCGCCGGGTTTCTGATGTCATAGAAATTGCAGACGGCAGCCGTCGCCGTAAAGCCGCAATCCT GACGGAAAGTGATTATCGCGTTCTGGTTGGTGAATTGGACGATGAGCAGATGGCTGCATTGTCCCGGCTG GGTAACGATTATCGGCCGACGAGTGCTTATGAACGTGGCCTGCGTTATACAAGCCGGCTGCAGAATGAGT TTGCAGGAAATATTTCTGCGCTTGCCGATGCGGAAAACATTTCTCGTAAGATCATTACCCGCTGTATTAA TACGGCCAAACTGCCTAAATCCGTTGTTGCCCTGTTTGCACATCCTGGAGAACTGTCTGCCCGGTCAGGT GAAGCCCTTCAGAAGGCTTTTGCAGATAAAGAAGAATTACTGAAGCAGCAGGCTGAGACTCTCCACGATC AGAAGAAAGCGGGACTAATCTTTGAAGCTGAAGAGGTCATTAGTCTTTTAACATCCGTACTGAAACAATC TCCCGCATCAAGAGTTAATCTGAGCTCACGTCATCAGTTTGCTCCAGGGGCAACAGCATTGTATAAGGGC GATAAAATGGTGCTTAACCTGGATAAGTCCCGCATTCCTGCGGAGTGTATAGAGAAAATAGAAGCCATTC TTAAGGAGCTTGAGAAACCAGGAGTCTAATGCGGACACGCTTTAGTCTACGGTTATCTCCCTTTACTTCA TTTCCTTTCTCACAGGCCAGAAAACATAACTGGCCTGAATATTCTCTCTGGGACCACGGTCCCACCTGCA TCGTCTGTCAGGTTATCTGCCTGGGACCACGGTCTCACCTGCGTCATCGGTCAGGTTATCTGCCTGGGAC CACGGTCCCACCTGCGTCGTCGGTCAGGTTATCTGTCTGGGACCACGGTCCCACCTGCGTCATCTGTCAG GTAATCTGTCTGGGACCACGGTCCCACCTGTATCGCCGGTCAGGTTATCTCCCTGGGACCACGGTCCCAC CTGCGTCATCTGTCAGCTTATCTGCCTGGGACCATGGTCCCACCTGCGTCGTCGGTCAGCTTATCTGCCT GGGACCACGGTCCCACCTGCGTCATCTGTCAGCTTATCTGCCTGGGACCACGGTCCCACCTGTATCGCCG GTCAGGTTATCTCCCTGGGACCACGGTCCCACCTGCATCGTCGGTCAGGTTATCTCCCTGGGACCATGGT CCCACCTGCGTCGTCGGTCAGCTTATCTGCCTGGGACCACGGTCCCACCTGCGTCATCTGTCAGCTTATC TGCCTGGGACCACGGTCCCACCTGCATCGTCGGCACATTATTAGTTAGGGATAACGGTTCAATCAATGCC TGTCACGAACAGGTATTGGTTTGTCGCCAGCAACCCGATGAGCGGAGTAATCACGCAGCAGGGCGGCTAT TACAGGCGATGGTGAAAGCTCTATTGGGATCTGAACGAAGCATGTTGAGTGAAATTTGCAAAATTTCGCA GAGTATGCAGCTTAATCTTTAAATTTCCGCCGGCATTTTTAAAGCCAGCTACCGACGCTGCGCGTTGGCC GGCCCTTCGTCCGGCGGGTAACCAGTACCGGCCGATCTTACGACCCTGGATGAACATCATCCCGTCAGCA GCGTCTCCACTGTGATGTCGTTTTTCACACTGTGCGATCACAAAATAGAACGGGGAGGGACAACATATGG TAGGAAAAGCAACTGCCAGAGACACAATATATTGATTATCCACAGTAACGGGGGATAACCGTGTGGGTAA CATATTGAAAGTCCGTCACGTTATCGTATTAATTGACTTTGTAGACACCACTGGACCATAAAAAGAATCC GGGGGAATCATCACAGCGCATAAACATACCGTTTGTTTTTGGGGGACGGCAAGGAGGCCCCTGTTATCCA GTGCGCCGTAAAACCCCGACCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCGACTAACTTCGGTTAAAA TAGCTTCATGAAACGACTTCAAGCCTTCAAATTCCAGTTAAGACCGAATGGTCAGCAGGAGCGCGATATG CGGCGCTTCGCTGGGGCTTGTCGCTTCGTCTTTAACCGTACGCTGGCGCTTCAAAACGAAAACCATGAAG CGGGGAACAAATTTGTTTCCTACACCAAAATGGCTTCATGGCTCATTGAGTGGAAATCACACCCTGATAC CCAGTGGCTAAAAGACACGCCATCACAGCCGTTGCAGCAGTCGCTCAAAGATCTGGAGCGCGGCTACAAG AATTTCTTCCAGAAGCGTGCAGCATTCCCTCGTTTCAAGAAACGCGGCCAAAACGATGCCCGCAAGGCGT GAAGCTCGATCAGACCAACAATCGTATATCGCTTCCTAAGTTGGGCTGGATACGCTATCGCAATAGCCGT GAAGTCATCGGCGAAGTTAAAAACGTCACGGTCATCCAGTCATGCGGCAAATGGTACGTTAGCATCCAGA CGGAATACGAAGTGCCTGAACAGGTTCATAAGGCAGCGTCAATGGTCGGTTTGGACGCCGGAGTCACGAA ACTTGCCACGCTTTCTGATGGCACCGTATACCAGCCAGTCAACAGCTTCAAAGCAAGCCAGCGTAAGCTG GCTATGCTTCAACGGCAGTTAAGCCGCAAAGTTAAATTCAGTGCCAGTTGGCAGAAACAGAAGAAAAAAA TCCAGCGTCTGCACTCACACATTGCCAATATCCGGCGCGACTACCTTCACAAAGTCACCAGTGAAATCAG CAAAAACCACGCGATGATCGTCATTGAGGACTTGAAGGTCAGTAACATGTCGAAATCGGCAAAAGGTACG GCAGAGCGGCCCGGACGAAACATCAGAGCCAAATCAGGCTTAAACCGTTCGATACTGGATCAGGGCTGGT ACGAAATGCGCAGACAGCTTGAGTACAAGCAGCTCTGGCGTGGTGGTCAGGTACTGGCGATACCTCCGGC ATACACAAGCCAGCGTTGTGCCTGCTGTGGTCATACGGCGAAAGAAAACCGTCAAACGCAAAGTAAATTC GTGTGTCAGGTATGCGGCTATACCGAGAACGCCGATATCAACGGAGCACGTAACATTTTAGCGGCAGGAC ATGCCGTGCTTGCCTGTGGAGGGATGATACAGTCGGGCCGCCCGCTGAAGCAGGAACCCACCGAGGCGAG TCAGGCTCCGGTCTGAACGCTGTAGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAACAATTGCACCA GGTCTTTTTCGTCCAGCGCATCGAGCATTTGTTCATACAGAGCCGCGGGCACACAATAAAAAACAGGGCG GTTGCGGTCAATAATCGCGACCGGGTAGCCGCCGCCGGCACTGGCGGTGGCCACCGGATCGTTTTTAAGT TCTCAGACGCTGGCAGTCACATCACACAGAATGATGTTTGTCATGGTTCCCTCCTGAGACAAGTCATCTG TATGATCGGTAAAGTAAGCTCTGGCGGCAAGTCCCGTCTGTCATTTCGACGGTCAGAAACGGGCAACCGG CAGCTCCTTCCAGCGGGTGGTATATGCCGGTGACAGCATCTCCCGTTTCATCTGCCAGTCCGGCGCAATA CCCCGTCCGGCAAACCAGACTTTCCCGAGTCCGGAATGATTAATGCCGTCGAGTACCTTCATCAGCGCAT CGCTGTGCGGCCGTGGCTGCACGTCATCGAACAGATTCAGCTGCGCGACGCCGTTCGGACTGAAATCATT GAGCATTATCCCCGCTTTTGCGTAGCGGTGGCCATCGAGCCAGATCCTGTCCAGAGACCTGACCGCTGCC GCGATAATGTCCCGGGTGTCACGGGTAGGGGTGTTCAGTTTTTCCGTGGCCACGTTACCGTAATACGGCT CATTAACCGCAAAAGGGGATGTCTTGATGAAGGTGCTGATATGCCGGCAGTACTGTCGCTCACCGCGCAA CTTTTCCGCCGCGCGCTCGGCATACTGGCAGACGGCCTGGCGCATTTCTTCGTAGGTGGTGATCCGCTGC CCGAAGCTACGACTGCAGACAATCTGCTGTTTCGGCGGCGGCGCTTCCTCCAGTGAAATGCAACTCTCGC CGTTCAGCTCACGTACCGTGCGCTCCAGCACTACGTTGAAGTTTTTCCGGATAAATGTGGGGTTCGTCAG CGACAGCTGCAGGGCGGTGGTGATCCCCATAACGTGCAGCTTTTTCGCTATCCGGTTCCCCACGCCCCAG ATTTCTTCCACCGGCTGCAGGCTGAGTAATTTTGCCGTTCTGCGTGGATTTTCGGGCGACAGCGCCAGTA CCCCCCTGAATTGTGGCCATTCCTTTGACGCCCACTGCGCCGATTTGGCCAGTGTTTTTGTGGCGCCGAA GCCGACACCGATCGTCAGTCCGGTTCCACTGAGAACATGCCCACGCAGCTGCCTGCCAAAATCCTCCAGA TCCATACAGTGGCCAATTCCCCGGGCATCCAGGAAACATTCGTCAATTGAGTATTGTTCGACGCGGGGCG ACAGCTCTTCCAGCAGGGCGACCACACGGTTACTCAGGCTCGCGTAGAGCTCGTAGTTGCTGGAAAAAAC GTACAATTTTTCAGGAAACTGCGCCTCTTTGAGCTGGAACCAGGGGGTTCCCATCTTTATACCCAGCAGT TTGGCTTCAGCACTCCGGGCAATAACGCAGCCATCGTTGTTACTGAGAACGACGACAGGTTTGCCGCGCA AATCCGGCCTGAAAACCTTCTCGCAACTGGCGTAGAAGGAGTTGACGTCAGCCAGGGCGAACATCAGTCT GCCCTCCGGGTTTTATGAATGAAGGCTGTCACCACGCCGAAAATTTGCAGCGTTTCCGGATCCGGGTACA GGGAAGGGAAGTCCGGGTTCATCGCCTGCAGGGCTGGCCGCGGCGTCAGAAGCAGGCGTTTTACCGTAAA TTCACCCTCAATTTCCGCGATAACAATATCCCCGTGCCGCGGCTGTTCTGCTTTATCCACGACCAACAGA TCGCCGGAATAGAGGCCAATATCAGTCATTGAGTTGCCAATCGCCCTGACAAAATAGGTGGAGTGGCGCC GGTGAATGCAGTACTCATTCAGATCCAGTTCAGACTCAGTGTAGTCTGCTGCCGGTGACGGAAAACCCGC AGGGCATCGCTCTGTGAACAAAGGAATTTTTACTATGCTGGCTTCTGATACTGCAGGAATGAACTTCATC GTTTTTTTCCTCGCTTAAAGCTGTATATATATACAGTATTATTTTGCGGAGGCCGTTTTTTTTTCAAGTC ATCTTGTTGCCGTTGTCTGTAACCATTTGCTGTTCCTGCAAAAACAGGGAAATTTCAGAAGGATCGCTGC CAGTCCGGAGAATCGTTATCTAATAAAATGTAATATACTGAAGTACAGTGCATTTATTCTGAGTGGAGTG ATTATGAATACGGGTTTAAGGCAGGTTCTGCGATATGCAGGCGTCCCGGTTGACGCCGCTGAACCGGTGC GCCGGCAATTCGGTAGCCGCCTGATTTTAATCGTGACGGTTGCTCTTCTTCCGCTGTTGATTGTTGACGT CCCTCAGTGGCTATTTGTGCTCTCTCAGATTATCTGGGGAAGCGGTATGTACATTGGTATCTCCGTGGCC AGTGATAAACCAGATCGCCGATAAGCTCAGAACGAGAGGTCTCCCGGGCCGCCTGGTGACGGGCAGCTGA TAAACTGGCGCCATGCCATCAACACCGGATAAGGACGTCGCCGGCTTGTCTTTGCCGCCGGCTCCGCTTT GTCCGGCCCCCTCCCTCCGGTCTGCGGCCTTTATACGCAGCCATCGCGTCGCGATGCCAGCTTCTGCTTT TCTCCCTGCGCTCGTAAACCGCGACAGGGGACCTCATGTTGTATCTCCTGCATCGCTTCGGGTAGTGCCG TGCCTTCACTTTAGCCCGGCCGCTGCAGATGCAAGGGTTCGCTGGCGCCGCCATCCTCGCCCGGTCGCAG TTTTTTTATGAAGCTCGCCGTTCTTCCCGTCGTTTTCTCGCTCAGGTTTCGCTCTAAAACCGTCCAGACC AGCTTCGTGCTTTATCTGCGCTGCGGCCTCCGGTGTCGCCCTTGCATCTTCCGCTTTCCGCCGGGCTGTC GTGTCGGCACGGCACAACCCGGTGCCGCAATCTTATGAACCTGTGGAGGTTGCTATGTATCATGCCCGTC AAACCATGCTGAATGTAGAGGAGTCCGACCGTCTCTCGTTCCTGCCGGATCTGTTTGGTAACGATTTTCT GGCCGGAGAGATGCAGGTCTATGCGCTCGCTGAGAAACACATCACCGATTACTGCGGAGGCTTCTGGCAT TTCATCCGTATTCCGGAGGGCGGCGGCTACATGATGCCTGACGGTGACCGTTTCCATCTGACTAACCCGG ATAACTGGTTTGATCGGTCCGTCAGCGCGGATGCGGCCGGAGTTATCATTACGGCGCTGGCGATCAACCG CCGTATCTGGCTGCACCATGAACGCGGTGATGCTGCCCTGACACGCCACCTGATGCTGCGGGAATCGCAG CTGTGGAATTTCATTGACTCTCATGACGAATGCGCTGCTATTTACGCGGCTCTGGACTGATACTATATCG GGGCGCCCGACGCCCCGTTTAAGGTCTGAGACGGCACGATCTGTGAGGAGCTTACCCGGCTTCGCAGATC GGTGCGGCCGCGCGAAAATCCTGGCAGGCTTCGCCTGCCGGTGAGGCGGTTCGCCACACCTGCGGCGCTG CGTACTGGCCTCACCTCAACAGGTCGCCAGTTAAGGATTAAGAGCGTAATATCTGCGTACCTTTTCTTCT TTTGCTGAATTTGCGTATGTCGCAGTGGAATATTGCCTCTTTTTCAAAGGAGGAGCAGGACAAAGTTGCC GTCGATAAGGTGGCTGCTGATGTTGCCTGGCAGGAGCGCATGAACAAGCCCGTCATGCCGGAACTTGTTG AACGGGAACAGCCTGAACACCTGCGCGAATATTTCCATGAACGGTTCCGCGTACATCGACTGAACAGTCA GCAGCTGCCGCGCGCAAATGCACCCGAATATAATAAACCGGGCGATGATCAGCAGAATTGA
Region Details
| Region | 1 |
| Region Length | 8.5Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | transposase |
| Region Position | 1620-10150 |
| # tRNA | 0 |
| # Total Proteins | 9 |
| # Phage Hit Proteins | 8 |
| # Hypothetical Proteins | 1 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 7 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_P1_NC_005856(3) PHAGE_Klebsi_phiKO2_NC_005857(3) PHAGE_Salmon_SJ46_NC_031129(3) PHAGE_Entero_N15_NC_001901(2) PHAGE_Yersin_PY54_NC_005069(2) PHAGE_Cronob_ENT39118_NC_019934(2) PHAGE_Salmon_vB_SosS_Oslo_NC_018279(2) PHAGE_Bacill_phiNIT1_NC_021856(1) PHAGE_Escher_HK639_NC_016158(1) PHAGE_Mycoba_Job42_NC_021538(1) PHAGE_Pseudo_YuA_NC_010116(1) PHAGE_Pseudo_MP1412_NC_018282(1) PHAGE_Staphy_Twort_NC_007021(1) PHAGE_Brevib_Sundance_NC_028749(1) PHAGE_Entero_HK140_NC_019710(1) PHAGE_Pectob_ZF40_NC_019522(1) PHAGE_Bacill_SPbeta_NC_001884(1) PHAGE_Salmon_SEN34_NC_028699(1) PHAGE_Entero_If1_NC_001954(1) PHAGE_Pseudo_M6_NC_007809(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 33.33% |
| GC % | 53.12% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|CP012572.1| Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-6.X, 163420, gc%: 51.75%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 9 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 1620..2777 | PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; AM278_28265; phage(gi46402111) | 0.0 | Showinfo_outline |
| 2 | 2777..3748 | PHAGE_Yersin_PY54_NC_005069: partitioning protein SpyB; AM278_28270; phage(gi33770536) | 9.74e-114 | Showinfo_outline |
| 3 | 5117..5401 | PROPHAGE_Escher_Sakai: putative transposase; AM278_28275; phage(gi38704244) | 4.81e-52 | Showinfo_outline |
| 4 | 5398..6255 | PHAGE_Entero_If1_NC_001954: hypothetical protein; AM278_28280; phage(gi9630756) | 6.62e-157 | Showinfo_outline |
| 5 | complement(6572..7843) | PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; AM278_28285; phage(gi431811050) | 0.0 | Showinfo_outline |
| 6 | complement(7843..8268) | PHAGE_Cronob_ENT39118_NC_019934: protein umuD; AM278_28290; phage(gi431811072) | 3.10e-32 | Showinfo_outline |
| 7 | 8483..8713 | hypothetical protein; AM278_28295 | 0.0 | Showinfo_outline |
| 8 | 9234..9659 | PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; AM278_28300; phage(gi162135127) | 1.98e-14 | Showinfo_outline |
| 9 | 9896..10150 | PHAGE_Escher_HK639_NC_016158: DNA pol III theta; AM278_28305; phage(gi356870660) | 3.30e-22 | Showinfo_outline |
Sequence
>1620..2777
KlebsiellapneumoniaeMDTLNQCISAGHEMTKAIAIAQFNDDSPEARKITRRWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMETRGRVEQRVGYTIEQINHMRDVFGTRLRRAEDAFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDASYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLLRNVDLKGFEPDVRILLTKYSNNNGSQSPWMEEQIRDAWGSMVLKNVVRETDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR
Sequence
>2777..3748
KlebsiellapneumoniaeMKRAPVIPRHTTHTQSTEDTSSPAPAAPMVDSLIARVGAMARGNAISLPVCGREVKFTLEVLRGDSVESASRVWSGNERDQELLTEDALDDLIPSFLLTGQQTPAFGRRVSDVIEIADGSRRRKAAILTESDYRVLVGELDDEQMAALSRLGNDYRPTSAYERGLRYTSRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFAHPGELSARSGEALQKAFADKEELLKQQAETLHDQKKAGLIFEAEEVISLLTSVLKQSPASRVNLSSRHQFAPGATALYKGDKMVLNLDKSRIPAECIEKIEAILKELEKPGV
Sequence
>5117..5401
KlebsiellapneumoniaeMRRFAGACRFVFNRTLALQNENHEAGNKFVSYTKMASWLIEWKSHPDTQWLKDTPSQPLQQSLKDLERGYKNFFQKRAAFPRFKKRGQNDARKA
Sequence
>5398..6255
KlebsiellapneumoniaeMKLDQTNNRISLPKLGWIRYRNSREVIGEVKNVTVIQSCGKWYVSIQTEYEVPEQVHKAASMVGLDAGVTKLATLSDGTVYQPVNSFKASQRKLAMLQRQLSRKVKFSASWQKQKKKIQRLHSHIANIRRDYLHKVTSEISKNHAMIVIEDLKVSNMSKSAKGTAERPGRNIRAKSGLNRSILDQGWYEMRRQLEYKQLWRGGQVLAIPPAYTSQRCACCGHTAKENRQTQSKFVCQVCGYTENADINGARNILAAGHAVLACGGMIQSGRPLKQEPTEASQAPV
Sequence
>complement(6572..7843)
KlebsiellapneumoniaeMFALADVNSFYASCEKVFRPDLRGKPVVVLSNNDGCVIARSAEAKLLGIKMGTPWFQLKEAQFPEKLYVFSSNYELYASLSNRVVALLEELSPRVEQYSIDECFLDARGIGHCMDLEDFGRQLRGHVLSGTGLTIGVGFGATKTLAKSAQWASKEWPQFRGVLALSPENPRRTAKLLSLQPVEEIWGVGNRIAKKLHVMGITTALQLSLTNPTFIRKNFNVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGQRITTYEEMRQAVCQYAERAAEKLRGERQYCRHISTFIKTSPFAVNEPYYGNVATEKLNTPTRDTRDIIAAAVRSLDRIWLDGHRYAKAGIMLNDFSPNGVAQLNLFDDVQPRPHSDALMKVLDGINHSGLGKVWFAGRGIAPDWQMKREMLSPAYTTRWKELPVARF
Sequence
>complement(7843..8268)
KlebsiellapneumoniaeMKFIPAVSEASIVKIPLFTERCPAGFPSPAADYTESELDLNEYCIHRRHSTYFVRAIGNSMTDIGLYSGDLLVVDKAEQPRHGDIVIAEIEGEFTVKRLLLTPRPALQAMNPDFPSLYPDPETLQIFGVVTAFIHKTRRAD
Sequence
>8483..8713
KlebsiellapneumoniaeMNTGLRQVLRYAGVPVDAAEPVRRQFGSRLILIVTVALLPLLIVDVPQWLFVLSQIIWGSGMYIGISVASDKPDRR
Sequence
>9234..9659
KlebsiellapneumoniaeMYHARQTMLNVEESDRLSFLPDLFGNDFLAGEMQVYALAEKHITDYCGGFWHFIRIPEGGGYMMPDGDRFHLTNPDNWFDRSVSADAAGVIITALAINRRIWLHHERGDAALTRHLMLRESQLWNFIDSHDECAAIYAALD
Sequence
>9896..10150
KlebsiellapneumoniaeMSQWNIASFSKEEQDKVAVDKVAADVAWQERMNKPVMPELVEREQPEHLREYFHERFRVHRLNSQQLPRANAPEYNKPGDDQQN
Klebsiella pneumoniae strain UCLAOXA232KP plasmid pUCLAOXA232-6.X
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 163420 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: AM278_28265 (Region 1)
Locus: AM278_28265ORF Start: 1620
ORF Stop: 2777
Strand: Forward
Protein Sequence: MDTLNQCISAGHEMTKAIAIAQFNDDSPEARKITRRWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMETRGRVEQRVGYTIEQINHMRDVFGTRLRRAEDAFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDASYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLLRNVDLKGFEPDVRILLTKYSNNNGSQSPWMEEQIRDAWGSMVLKNVVRETDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM278_28265, plasmid partition protein SopA, phage(gi46402111), PHAGE_Klebsi_phiKO2_NC_005857
Homolog/Ortholog E-Value: 0.0
Locus 2: AM278_28270 (Region 1)
Locus: AM278_28270ORF Start: 2777
ORF Stop: 3748
Strand: Forward
Protein Sequence: MKRAPVIPRHTTHTQSTEDTSSPAPAAPMVDSLIARVGAMARGNAISLPVCGREVKFTLEVLRGDSVESASRVWSGNERDQELLTEDALDDLIPSFLLTGQQTPAFGRRVSDVIEIADGSRRRKAAILTESDYRVLVGELDDEQMAALSRLGNDYRPTSAYERGLRYTSRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFAHPGELSARSGEALQKAFADKEELLKQQAETLHDQKKAGLIFEAEEVISLLTSVLKQSPASRVNLSSRHQFAPGATALYKGDKMVLNLDKSRIPAECIEKIEAILKELEKPGV
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM278_28270, partitioning protein SpyB, phage(gi33770536), PHAGE_Yersin_PY54_NC_005069
Homolog/Ortholog E-Value: 9.74e-114
Locus 3: AM278_28275 (Region 1)
Locus: AM278_28275ORF Start: 5117
ORF Stop: 5401
Strand: Forward
Protein Sequence: MRRFAGACRFVFNRTLALQNENHEAGNKFVSYTKMASWLIEWKSHPDTQWLKDTPSQPLQQSLKDLERGYKNFFQKRAAFPRFKKRGQNDARKA
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: AM278_28275, putative transposase, phage(gi38704244), PROPHAGE_Escher_Sakai
Homolog/Ortholog E-Value: 4.81e-52
Locus 4: AM278_28280 (Region 1)
Locus: AM278_28280ORF Start: 5398
ORF Stop: 6255
Strand: Forward
Protein Sequence: MKLDQTNNRISLPKLGWIRYRNSREVIGEVKNVTVIQSCGKWYVSIQTEYEVPEQVHKAASMVGLDAGVTKLATLSDGTVYQPVNSFKASQRKLAMLQRQLSRKVKFSASWQKQKKKIQRLHSHIANIRRDYLHKVTSEISKNHAMIVIEDLKVSNMSKSAKGTAERPGRNIRAKSGLNRSILDQGWYEMRRQLEYKQLWRGGQVLAIPPAYTSQRCACCGHTAKENRQTQSKFVCQVCGYTENADINGARNILAAGHAVLACGGMIQSGRPLKQEPTEASQAPV
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM278_28280, hypothetical protein, phage(gi9630756), PHAGE_Entero_If1_NC_001954
Homolog/Ortholog E-Value: 6.62e-157
Locus 5: AM278_28285 (Region 1)
Locus: AM278_28285ORF Start: 6572
ORF Stop: 7843
Strand: Backward
Protein Sequence: MFALADVNSFYASCEKVFRPDLRGKPVVVLSNNDGCVIARSAEAKLLGIKMGTPWFQLKEAQFPEKLYVFSSNYELYASLSNRVVALLEELSPRVEQYSIDECFLDARGIGHCMDLEDFGRQLRGHVLSGTGLTIGVGFGATKTLAKSAQWASKEWPQFRGVLALSPENPRRTAKLLSLQPVEEIWGVGNRIAKKLHVMGITTALQLSLTNPTFIRKNFNVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGQRITTYEEMRQAVCQYAERAAEKLRGERQYCRHISTFIKTSPFAVNEPYYGNVATEKLNTPTRDTRDIIAAAVRSLDRIWLDGHRYAKAGIMLNDFSPNGVAQLNLFDDVQPRPHSDALMKVLDGINHSGLGKVWFAGRGIAPDWQMKREMLSPAYTTRWKELPVARF
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM278_28285, DNA polymerase, phage(gi431811050), PHAGE_Cronob_ENT39118_NC_019934
Homolog/Ortholog E-Value: 0.0
Locus 6: AM278_28290 (Region 1)
Locus: AM278_28290ORF Start: 7843
ORF Stop: 8268
Strand: Backward
Protein Sequence: MKFIPAVSEASIVKIPLFTERCPAGFPSPAADYTESELDLNEYCIHRRHSTYFVRAIGNSMTDIGLYSGDLLVVDKAEQPRHGDIVIAEIEGEFTVKRLLLTPRPALQAMNPDFPSLYPDPETLQIFGVVTAFIHKTRRAD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM278_28290, protein umuD, phage(gi431811072), PHAGE_Cronob_ENT39118_NC_019934
Homolog/Ortholog E-Value: 3.10e-32
Locus 7: AM278_28295 (Region 1)
Locus: AM278_28295ORF Start: 8483
ORF Stop: 8713
Strand: Forward
Protein Sequence: MNTGLRQVLRYAGVPVDAAEPVRRQFGSRLILIVTVALLPLLIVDVPQWLFVLSQIIWGSGMYIGISVASDKPDRR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM278_28295, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 8: AM278_28300 (Region 1)
Locus: AM278_28300ORF Start: 9234
ORF Stop: 9659
Strand: Forward
Protein Sequence: MYHARQTMLNVEESDRLSFLPDLFGNDFLAGEMQVYALAEKHITDYCGGFWHFIRIPEGGGYMMPDGDRFHLTNPDNWFDRSVSADAAGVIITALAINRRIWLHHERGDAALTRHLMLRESQLWNFIDSHDECAAIYAALD
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM278_28300, hypothetical protein, phage(gi162135127), PHAGE_Pseudo_YuA_NC_010116
Homolog/Ortholog E-Value: 1.98e-14
Locus 9: AM278_28305 (Region 1)
Locus: AM278_28305ORF Start: 9896
ORF Stop: 10150
Strand: Forward
Protein Sequence: MSQWNIASFSKEEQDKVAVDKVAADVAWQERMNKPVMPELVEREQPEHLREYFHERFRVHRLNSQQLPRANAPEYNKPGDDQQN
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM278_28305, DNA pol III theta, phage(gi356870660), PHAGE_Escher_HK639_NC_016158
Homolog/Ortholog E-Value: 3.30e-22
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download