Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1111295622 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1111295622.PHASTER.zip
gi|00000000|ref|CP018192.1| Granulibacter bethesdensis strain NIH6.1 chromosome, complete 2690741, gc%: 58.55%
Download summary as .txt file: summary.txt file_download
Total: 4 prophage regions have been identified, of which 0 regions are intact, 4 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 6Kb | incomplete | 10 | 8 | 108747-114780 info_outline | PHAGE_Entero_phi92_NC_023693(4) | 60.28% | Show info_outline |
| 2 | 8.6Kb | incomplete | 30 | 9 | 1731525-1740196 info_outline | PHAGE_Erwini_phiEt88_NC_015295(2) | 49.95% | Show info_outline |
| 3 | 3.9Kb | incomplete | 20 | 6 | 1741594-1745505 info_outline | PHAGE_Erwini_phiEt88_NC_015295(3) | 56.65% | Show info_outline |
| 4 | 8.8Kb | incomplete | 40 | 12 | 1748649-1757516 info_outline | PHAGE_Erwini_phiEt88_NC_015295(4) | 61.12% | Show info_outline |
Region DNA
>1 108747-114780 CTACTCATCCAGGCGGATGACGACCTTACCCAGATGGGTGGCGCTTTCCAGATGGCGATA GGCTGCCACTGCCTCGGCAAAAGGAAAGACGCGGTCAATCACTGGCTTGATCCGGTGTTG GCTGATGGCGATGTTCATCGCCTCGAACATTGCGCGGGAGCCGACATAGATGCCGCGCAG GGTCTGGGACCGGGCCATCAGAGGCATAGGGTTGATCTCGTTCTGACCGCTGAGTACGCC AATCAGATGGATCTGGCCGCCCAGCCGCGCGGCGCGGATGGATTGCCACAGTGTGCCGGC GCCGCCGACTTCCACAACGTGATCGACGCCAAGACCTCCGGTCAGGGCAGTTGCAGCCTT ATGCCAGTCGGGCCGGCTGCGGTAATTAATGCCTTCATCGGCCCCCAGAGCCTGGGCGCG TGACAGCTTTTTGTCAGAGGAGGAGGTGGTAATCACGCGCGCACCCGCTGCCTTGGCGAA CTGGATCGCAAAGATGGAGACACCCCCGGTGCCCTGTGTCAGCACTGTCTGGCCTGGTTG AACAGGTGTGCTGCCGAACAGGGCGTGCCATGCTGTTACAGCGGCACAGGGCAGACAGGC TGCTTCTTCCCAGGAGAGATGGTCCGGGATGCGCACTAGCCCATCCTGTTCGAACACCGC ATATTCCGTCAGCACGCCGTGAATGGCGCCCCCGAGTGCGCTGGCCCCGTCCCGTTCGGT GATCGGGCCATCATGCCAGCTCTGGAAAAAGCAGGGGGCTACCCGGTCGCCGGGCTGAAA GCGGGTGACATCCTCCCCGGTTTCAATGACCTCGCCTGCCCCGTCGGAGAGGGGGATCAG ATCAGGTGGTACCGGACTGAGGGGATACTGTCCGCGTGCGACCAGAAGATCACGATAGTT CAGGGAGGCCGCCCTCAGCCGTACCAGCACTTGTCCTCGGCGAGGTTTCGGTTCCGGGGC CTCGGTCGTGTAAAGACTGTCAAATCCCTGAGGGACGATTCCGTGCGGGCCGGGCAGGCG GTATAGCTTCATAAGAGCTCTCCGATTCTCGTGGTGACATGCAGGGGTTGCCCGGGGGCA GCAGGATGGCGATCAGGCAGTATGGCAGGCGGGCCGGATAATGGCGACTTATGTCAGGTC AATTCTGCAGGATGACGAATATGTGCTGTTCGTTACTCGCTTGCACTGGGTGATCTATGC GCGGGCCATGGTTTGTATCATGGCGGCTCCGCTTCTGTCGGGAACCCTGGCCGGAGCAGT AGAGAGTCAGGGTATGCGTACGCTCGCGCTAGGGGGCGGATTGGTTCTTATGGCACTCGG CCTATATGCCGCGCTGAAGGCGTGGTGGAGGCGGTACGGGACAGAAATCGTGGTGACGGA TCGCCGTGTGATCCACAAACAGGGCGTGCTGGTGCGTCGGACCGTGGATATGAATGCTGT CAGAATTGAATCCGTGGATGTGGAGCAAGGGCTGGTGGGCCGTTGGCTGGGCTATGGCGA TGTGACGTTACGCGGCACCGGTGGCGGTATGGAGACTATTCGCCGTGTCGCGAGGCCGCT CGATCTGCGTAACGCGGCGCTGGCGGAATGACACCCCGGGATTTGCTCCGGGCGGGGCCG GATATTCTCTATCAGGACCAGCATTTTGTGGTGCTTAATAAACCGGCCGGGCTGCCCGCG CATGCCGGTCCTGCGGGAGGCCCAAGTGTGGAGGACTGGTTTCCCCTGCTTTCCCGCCGC AAGGAGGGGCCATGGCTGGCGCATCGGCTGGATACGGATACCAGTGGCTGCCTGATCATC GCGCTGCGCAAAACGCCGCTGCTGGAGGCGCAGGCCATGTTCGCGAAGGGGCAGGCCGGC AAACGCTACTGGGCGGTGGTGCGGGGGGCGCCTCCGGCAGCGGAGGGCCGGATCGACCGC AAGCTGAGCCGTCGTAGCGAGAGCGGAGAAGCCGGCCGCGGGCGCTGGCGTATGGTGGAG GATGCACAGGGGCAGTCAGCCTCCACATCATGGCGTGTCATGGAGCAGCAGCATGGTCTT AGCTGGCTGGAACTGTCGCCCTTGACCGGACGGACGCATCAGCTGCGTGTCCATTGCGCC CTGCTTGGCTGCCCGATTCTGGGCGATCCTGTTTACGGTGACGGCAAGAATGCACCGCTT TGTCTGCTGGCATGCGAAATTCGCCTGCCCCTGGACCCGGTCATGATAGTGCGGGCACCT GTGCCAGCGCATATGCAGCGGTACGGATTCAGCTTCCCATCCCCATAAGACAGTATTGTA CAATACAGGGAATGGCTTCTTGCTTTAATATGAATATAATTTTTAATAATATCCGTATTG TTCGGAGCATTCTGTAATTTTTAAATCTGATGTCTGATGTAAATTTTCAGAACCGAAGTA TACCAGAATTAAAAATCCCTGTCAGACTTTTAAATCATTCGTTGAATAGCAGCCATAAAT TTGAAACTGTCAGCACTGTCCGCGTCCAGACCATGAAAAAATTCAAAAGCTCGCTTGCCG GGGATCGTCAGGGCTGCAATGACTAGAACCGTTTGAATAAGACTTTTCAGGAGTGCGGGC TTCATGCGGATTCTGGTTACGGGTGGATGCGGCTTTATTGGCTCGGCCGTCATACGGCAT CTGATCCGTGATACCGCTCACAGCGTGGTGAACGTCGACAAAATGACGTATGCCGCCTCC GAAGATGCGCTGGAGGAGGCTCTGACCGATCCTCGCCATACGCTGGTGAAGGCCGATATC TGTGATGCAGCGGCCATTGCGCAGGTGTTTGCCACCCATCGCCCGGATGCGGTGATGCAT CTGGCGGCGGAATCCCATGTTGACCGCTCCATCGACGGCCCGGCCCAGTTCGTGCAGACC AATGTGGTCGGTACCCTCGTCATGCTGGAAGCTGCCCGCGAACATTGGGCGAAACACCGC CCTGAAGGGGGCGGTCGCTTCCATCATATCTCCACCGATGAAGTGTTCGGAGCGCTGGAA AATGGCGATCCTCCGTTCACCGAAACGACTTCCTATGATCCGCGCAGCCCGTATTCGGCG AGCAAGGCGGGGTCGGACCATCTGGTCCGTGCATGGCAGCACACGTACGCAATGCCGACT TTCGTTTCCAACACCACCAATAATTACGGCCCATGGCAGTTCCCGGAAAAGTTGATCCCG CTGGTGACGCTCAATGCGTTGGAAGGGAAGGAGCTGCCGGTGTATGGCGACGGCTCCAAC CAGCGTGACTGGCTCTATGTTGATGACCACGCCGAGGCCTTGGTGCGGACGCTGGAGCGG GGTGAGCCGGGTGGCACATACGCCATCGGTGCCCGTCAGCCACGCAGTAATCTCGAGGTC GTGCGCACCATCTGTGCCGTGCTGGACGAACTTGTCCCTGACGCGGGTGGAAAGCGTGAA CGCCTGATCCGGTTCGTGACCGACCGGCCCGGCCATGATTTCCGTTATGAGATAGACCCA TCCCGCGCGGAGGCCGCGCTGGACTGGAAAGCACCCCATGATTTCGAAAAAGGTATCCGC CGTACCGTGCAATGGTATCTGGATCATCGCGCGTGGTGGGAAGGGATTCGCAGTGGCCGC TATGCCGGCCAGCGTCTGGGAACAGCGAGCTGAGTCATGAAAAAAGGCATCATTCTCGCC GGTGGCTCCGGTACACGCCTGCACCCGATGACCCTGGCTGCCAGCAAGCAATTGCTACCG GTTTATGATAAGCCGATGATCTATTATCCGCTGTCCACGCTGATGCTGGCGGGGATACGC GATATACTGATCATCTCCACCCCGGAGGATCTACCGCAATTCCAGCGCCTGCTGGGCACG GGGGAGCGGTTCGGAGTCAAGTTCAACTATGCCGTGCAGCCCAAGCCTGAAGGGCTGGCG CAGGCATTCCTGATTGGGCGGGATTGGCTGGAAGGTCAGGCCTGTGCGCTGGCGCTCGGC GACAATCTCATTTTCGCCGATCACCTATCGGTCATGCTGCGCGCCGCCGCCAGCCGTCCG GAAGGGGCGACTGTATTCGCCTATCGTGTGCGAGATCCGGAACGCTACGGTGTCGTGTCG TTCGATGATGCCGGGCGGGCACTGGAAATCGTGGAAAAACCGGCGGCCCCTCAATCAAAC TGGGCGGTGACTGGTTTGTATTTCTATGATGAAAAAGTGTCGGAATACGCGGCGGCGGTG AAACCCTCCCCCCGCGGAGAACTGGAAATCACCGATATCAATCGGATGTATCTCGAAAGC CATACGCTGCATGTGGAGCGCCTGGGCCGTGGTTGTGCGTGGCTTGATGCCGGAACATGT GACTCCCTGCTGCATGCCGCGACCTTCGTGCAGACCATTCAGGATCGGCAGGGTCTGCTG GTGGGCTGTCCGGAAGAGGTTGCCTTCCGGATGGGCTTTATCGATGCGGATCAGCTGAAG GCGCAGGCGCGTCTGCTTGCGAAAACCGAGCTGGGCCGCCTGCTGGCCGAGCTGGTCGAA GGGGCGCAGTAAGCGCTTTTTCTGTCTGTTGATTCTCTGGATGACCGACATAATTCAGGT GTGCGATGAAATTCGAACGGCTGGCTATCCCTGAGGTGATTTTGGTGACGCCGGACCGGT TCGGCGATAATCGGGGATTTTTCTCCGAGACCTATCAGCATCGCAAATACGCTGAAGGCG GGATCGCCGGAACTTTTGTTCAGGACAATCACAGCCTGTCTGCCCAGCGTGGCACTATTC GTGGCCTGCATTGTCAGGTGGCGCCGAATGTGCAGGGCAAGCTGGTCCGCTGCGTGCGGG GAGCGATCTGGGATGTCGCTGTGGATGCGCGCACTGGCTCCCCGACTTACGGCCAGTGGG TGGCGGCGGAGCTATCGGCGGAGAACTGGCAGCAGCTCTGGGTTCCCGGCGGCTTTCTGC ATGCATTCTGCACGCTCCAGCCGGATACGGAAGTCATTTACAAGGTCACCGGCGATTACG ATAAATCCGCCGAGCGCGGCGTGATCTGGAACGATGCGGAACTGAACCTGCCCTGGCCCG TTGCGCCCGAAGAGGTTGTGACATCCGAGAAAGATCTCCAGTTGCCGCCTTTCTCGGCGG CAAAAGGCTGGTTCACCTACGGGGAGCAGTGAGCATGAGCGGCCCTATTCTGGTGACGGG TGGCAGCGGTCAGGTCGCCCTTGCGCTTGAGGAAGCCGCGAAGGCACGAGATGTTTCTGT CCGACGGGTAGGGCGGCCGGAATTCGATTTCGACCGTCCAGACTCGATTGAAACCGTGTT TCGTGAGGTATCACCTTCCTTGGTGGTCAATGCGGCCGCCTATACGACGGTCGATGCGGC CGAGAGTGATGTCGCGGCGGCGGAGCGTGCCAATCGCGACGGTCCCGCCCGGCTGGCCGA GCTATGCGCGGTGGCGGGGATTCCGCTGATTCACATCTCCACTGATTACGTGTTCGACGG CAGCAAAGGTGCGCCGTATGTGGAGACCGATCCAACCAACCCGACCGGTGTCTATGGCCG GACCAAGCTGGCGGGGGAGGATGCGGTGCTGGCCACCTGCCGTCAGGCCATCGTGCTGCG TACCGCGTGGGTCGTGTCCCATACCGGCAAGAATTTCGTGAAAACAATGCTGAATGCCGC CCGCAAGACCGACACATTGCGGGTGGTAGCCGATCAGCAGGGCAATCCCACCAGCGCCGC CGATCTGGCGGAAGCCATTCTCGACATCGCGAAAAAGCTGGAAAAAGGCTGGAACGACAC CTATTTCGGCCCGACCCATGCGGCTGGAACCGGTGCCACCACCTGGCATGGTCTGGCGGA AGCGGTGTTCGAACAGGCGGCGAAGCATGGTGCTCCCCGGCCTGCCGTGCATCCTATCAA GACGTCTGACTGGCCGACCCCGGCCCGTCGCCCGGCTGATTCCCGGCTGGACTGCACGCG GCTGGAAACGGTGTTCGGGGTGCGCATGCCGGACTGGCAGGGCAGCATCGCACTTATCGT TGATCAACTCAGCACGGAAGGCGCGCCGGGCTGA
Region Details
| Region | 1 |
| Region Length | 6Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 108747-114780 |
| # tRNA | 0 |
| # Total Proteins | 8 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 1 |
| Phage + Hypothetical Protein % | 87.5% |
| # Bacterial Proteins | 1 |
| Attachment Site | no |
| # Phage Species | 3 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_phi92_NC_023693(4) PHAGE_Escher_phAPEC8_NC_020079(4) PHAGE_Sphing_PAU_NC_019521(3) PHAGE_Dickey_Limestone_NC_019925(1) PHAGE_Salmon_SKML_39_NC_019910(1) PHAGE_Erwini_phiEa2809_NC_027340(1) PHAGE_Bacill_SP_15_NC_031245(1) PHAGE_Serrat_phiMAM1_NC_020083(1) PHAGE_Prochl_P_TIM68_NC_028955(1) PHAGE_Shigel_Ag3_NC_013693(1) PHAGE_Bacill_G_NC_023719(1) PHAGE_Synech_S_SM2_NC_015279(1) PHAGE_Stenot_vB_SmaS_DLP_5_NC_042082(1) PHAGE_Synech_ACG_2014f_NC_026927(1) |
| First Most Common Phage # | 4 |
| First Most Common Phage % | 50% |
| GC % | 60.28% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Region DNA
>2 1731525-1740196 TTATTTGACTTTCGCCTCAAGGGTGGCGATGCGGGTCAGTGCATTCTGCAGGGCTGCAGT CAGCATCGGCACCAGCTTGCTGTAATCCACCTGCTGATAGTCCGGCACTTCACAGGATGC GTGCCACTCAGTGCCGTTCCAGAGATCGGGATTTTGCTCTTTTGCAGCCTGATAAGTGGT TTCGGTGACATTTTCCCATGCCACCGTACCATCACGAATCACGACATTGTCCACATGGCG CGTTCCATCGTGCTCCCCTGTTACCGCTTCAGGGATCACAGCTTGCAGCTCATGCGCGAT CACACCGGTCACGATGCGATCGGGATGAGAGATAAACGCAAAATTCTTGATATGAATATT CAGGATTTTTTCAGCGGCGGCACTTTGATCGAGATCGGTGATACTGGTTTTCAGACGATA ATCGGATGTGGTGTTGTATTGCACAGACGATCCATTGCTGCCGATGCTGCCGATCCATTG GACGCCACCGGAGGTGCCCGCCGAAAACGCAATAATCTGGTTATTGGAGCCGTTCGTTCC GAACGCGGCTGCCGGTCCGGAAGCGGAGTAGGCATTGAATCCGGTGGGCGTCATCGAGCA ACCATTTGCACCGTTATTGGCCGGGGTAAAATTTCCGTCCGTAGGTCCCGTGCAAACATA GTTATGCGCGTAGACCCGGTTGGCTGTTTCTATCTTCGAGCTGCAATAGAGGCTTCCGGA AAAATATCCAGCCCATGTCGCGGCACCGCTGTTATCGCTGGCATAGAGGCTGGAGTTGTT TCCGCTACCCTTGGTGACAGAGAGAGTGCCGACACTGGCGGATGTGGCGACATAGAGACC GCCGGATGTAGAAAAACCGCCGTTCAGCGCATAGACCGTCTGGCCGGTGACAGCGCCATT CGCTTTCATATTGTTGGATACGCTCAGGTCACCGCCATTGATGGTAGCACCACCATCAAC CTGGAATTTTTTACTGACATAGGCAGAGCCTGAAAAATATCCGGCCCATGTGGCCGCCCC GCTATTATCGTCCACATAGAGGCTGGAGGCATTTGTGCTCCCTCCGCCTACATACATCGT CTTTTTAAATGACGCTCCGCCATTGGCGGTGATGCCACCATTGGCGGTGATGCCGCCGGT TACCAGCAGCGATTTATCGGCGGTCATATCGCCACCGACTTCCAGAGTAGCCGATGATAT GATCAGGCCGGCACTTGCAGACTGCCCTTGCGTCCCACCGACAGCGATGATGCGCGCATT ATAGTCAGTATTGGTGCCGTCTGTATGAAAATCGATGTAGGGGGTGCTGCGGACCGACTG AGACCCGATCTCAAGGGGGCCATAGATGGTCGCACCACCTTGGAAAGCCGGATTTTTGAT CGGAGCGAACCATTTTGCCAACACTCCTCCGGCCTTGCCTGTTTCTGTCTCGCTCGGCGT GCTGCCATCAAGACCGATGACAGAGGAAATCTGCTGGTAAAGCCATTTTATTTTCCAGTC TCTTTCCTGAAACAGACCGTTGAACAATTCTACACTGGGTGGAATCTGTCCCAGATAGGA AAAACCCTGATCCGATTGCGTATCACTCGGCGGGGATGCCGTTCCTTGTGATGCCCAAAG GCTGCTGAAACGGTCAAAAAATGACATGCTTTTTCCTGTCAGTGTTGAGGTTAAAAAAAT CAGGACCAGAGAATTCAAGATGAGGGAATGATGTTATCCAGCGCACGCGCCATACAACCC GATCCGAAGCCCATATAACTCTGCTGCTGAAATCCGAAGGGTCTTGCCGGATCATACTGC ATCTGCACCAGACCAACGCCAGCCGGTTTTGGAAATCCCGCGATAGAACGTGCGAAAGCG AGATCAGAGGCCGTGATGAATCGTCCCACAACCGCGGTCAGACTTGCGTCACCATTATCC TGGAGCAGCGTACTGTCTGCATTGAACAGAACACAGAAAGCGGCCCTCAGATCCTCGGTT GTGCCATGTGCGTTGTTCAGCAGGATTTTGAGCTTCAACAACCGCCGATACTGATCATCC GTCAGCATTATCGCACTGGCCGGACCCACCAGCCGTGACTGGCCGAGAATATCGCCAATG CCATCCAGTTGATCTCCGCTTGCCTGATCCAGCACGCGATTATTCATCATCGCCTGCAAA GCCGTATCCAGCGTCGTGCAGGCCGGATAAAGCGCCTTGACCAAAGACTGAAGAGAAGAA CTGGCGGAAAACTGGGCCAGCATATGCTCCCACGCCACCACCCCATGATCGCGCCCGAAG ACCATGTTGGTGGCATCAGGCACCTGCCCGTTTCCTGGATCGGCATCGGCAATATAGAAA ACACGATCCGAAACACGGGAAGCAAAGCCGTTACTGGTAGGAATAAAACTGCTCACCCGG TTTTTTTCCAGCTGCGAAGCCGAAAAAACCATCGAAACAGCATTGCCTCCAGCCGCCCCG TTCACAACCAGAGAGGCTGAGACCGTATTCTGCCCCGCTGGAACCTGTAGACTCACCCTG ATCCTCACCAGCCGGCCTGAAGCATTGCCGGATGGAAACGCCTGCGTCACGTTGGCAGAA CCGGATGAGAGTCGCAGCGACACGACCGGCACAGACGCAGAGTTGCCGATCATCAATCCC CATGCGCTAAGCCACCATGTCTCCCCCGCCTGGGCCGAAACCGGGTCACCTAAACTCATT TGTGCGGAAGCTGCACTGTTAAGCGCAGGAAAATCGAATTGAAGGCAGGAAAAACCGTCC TTCATCAGTCGGCTGGTCACGATGGAAGCATAATTTCCAGACCAGCTTTTTTGACTCGTT GTCAGCATTGAATCAGGCAGATAGTTGGTAGACGCTCCCTCGGTCAGTGCGCCGAGATAA CTTCCATCATCGGCATAGGATGGTCTCAGAACATTCGGTCCGGTAATAACGAGTTTACCA TCTGCCGTGATATAGCTGGCAGCACTTTCCCGCTTTGTACCGAACGCGGTATTCAACTCA TTTTGAGCGATCATATGACAATGCCCGGAGCAATCTGAAACTGCGGACGCGCAAAAGCCG GCATGCATGACACATACCGGATTACGACATCCGCAGATCAGGAGAAAAGAGTAGAAAAAA CCTCGGCTTTTTCAAAAAGGCCGAAAGAGACATCCCTGCTTGATCGTGTAAGAAGGAATG TTTTTATGCATCGACTGTAGCAGACAATAAGAAATTATCTTCCCCTTGTCCACCTTTTTA TTCGACACCCCGAGACTATTGCGTTTCGGTCTGCCTCGCTCAGCTGGCGGAGGGTGGGCC GGAGCGTCCGGAACCGGGCTGCACACCGGAATGAGCATGTGTTTTGACCGAAATACCGTT AAAGACCGCATCCTGATCACCGGATACCGCGCCGTTGATTGTCAAGCCGCCCGGCGCATT CAGTATGAGAGAACCGGAAGATGTGAATTCCACAGAGGCAGAGCCGAACGCAATCACCAT ATTGTCGGGATGGGCCGGAGATGTAGCCTGGCTGTGCGCCAGACCCGGCACGGCAATGGC ATCGGTGATGTGGGTCTGACGGAAATTATCGACAATATCACTGCCGGCATCTTTCCAGTT TTCCAGCGAACGCTGGCAGAAATGCAGCATGACGCCATCACCGGAATGCAACGGCCAGGT GATGCCGACAGGGCCGACCGAGGGAAACACGACAGGCACATCGACAACACGCGGCGCTTT TATAATCTCCGCATCCGGTGAGGTTTTGGACAGGGAAAGCTGCACCTCGGCGCGGCGTGT GGCGGGGTCATAGGACACAATGGTGCCCGGCATGGTCGTGTTGATGCGATCGCAATGCGA GGCAATCAGGTTTTTCAGAATCTGCTTGATGTCTTCAGACATGGTAGGAATCCTTTGTTG ATATCAATAAAATTTGAAGCCGAACGGGTCTGTCTCTGCCTGACGCTTTTTCTCGGCCGG AATGGCCTTTGTCAGAGAAGGAAGATCATCCTTCGTTTCCTTGTCTAACTTGAAAGTAAA TTTTTTGAGGGAAATAAGATTAATCGTTGAGGTCCATGTTCCCAGCTCGGAATTTTCGAC CGGCATCGTATCGCCATTATGCTCGATCGTATCGACACGAAATTTTTCATAACCCTTACC CTGCTTAAGCCATACGGGGTCGCCCGGATTGATATCGGGCCGCATCAGGGAATAGACCTG CACACCTTCCTCCGTTCCGATACTGGAGACGAGTTCCTTCAGATACGGGTTATCGGCGGT ATTCAGATCCTTTATGATAGCGGAACTTCGCGGCCCCATGAAGGTTCTGTCGATATAACG GATCAGCCCTGTTTCCATGCTTAGAAGAACGGAAGGGCGCGTGGTGGTTTCTCCCTTTCT GGTAACCTGAATCGTTTGGTTCTGAACGGAATATTGCAAGCCAGAAGAATGACAGATGCT TTCAAGCATATCTTTGGCTGATCCGTAAAAGCTGAAGCCGCTTTTCAGACGTCTGGCACC AATGCCATCTGCCATGTACAATGGCATTTTGGCGTTCGTGGCTGCGGCCTCAATGATATC CCTCACAGGAATTCCTTTTTCTCCTGTAAAGCTTATCAATGATCGGGATAAAACATCAGA ACCGTCGAAGCCTACAACCGTCACAATAGAATCTGCATTTCTTTGGCCTGTTTTTATGGC GTATGGAGAACCTGAGAAGGCCAATGAAAACAAGCCAGATTCATAACCACAATAAACTTC TAAATATTTAGACCTGATTATAGAATCTAAATAATCACGGTTTATATTATATAGGTCAAC TTTTATACTGTTTCCAGAATTATTATACATTCTTTTAATATTTATTTTTGCTTTTATTTT TGTATATTTTTTTATTATATCACTACCATCAAAAATTACTTTATACTTTCTATTGTTTAA ATACTTCATTTTACCACTTCTCCATCTGATAGGCATGCCTTATGATCTATTTGCATCAAA AATTTTCCTCCAAATTCATCGTTATATAATGTCCATCCTCGACTTGATTTTATTGAAACA TCTGGTCTGTGTATGTGATTTTTTAATATTTCTTCAGATGCTATGCAGACAAACCAGTCT CCTTGTTCATTAACAGTCATATGAGATTGCAACCAAGTAAGATTCGGATTTCTTCTCTGA AGCTCTTCCCAAAATGGCTGGGTCAATCTTTCCTCTTCTTCCCCCCGATAAAGATGATAC GGACCGGGCGGCACGTCATATTTCTGACGCAGTTTTTCCAGAATTTCTGGTGTCAGCTTG CTTTCTATAGCCTCATCATGTTTTCTTCGACGCTCCATCTCCTCTTGCAGCGCCTTCGAC AATTTGGCCACCAGCTTCGGGTCCCAGTAATCTGCAACAGCAGACCCACAGGATAAAACA TTGCCTAAAAGAAGCCCGGCAATAACAAGGGTTTTGTATTTCATCGTCTGATACTCCATT TTATGCTTTCGTCTCCTTCGCTATCATACAGAAAGCGCACCATACCGGCAGGCACAATGC GCTTTCTGTATTATGATCGTAAGGAGAGTCTATCATACACCGCTTCATACTTCCTATTCT TGCAAATAAATCATTTTACTATTTCTCCATCTGTTTCGCACGCCTTATGACGTATTTCCA TCAAGAATTTTTCTCCGAATTCATTATCATATAATGTCCATCCTCGACTTGATTTGATTG AAATCTCTGGTCTGTGTATGTGATTTTTTAATATTTCTTCCGTTAAGATGCAGACAAACC AGTCTCCTTGTTCATTAACAGTCATATGAGTATATAGTAAACTAAGATTTGGATTTCTTC TCTGAAGCTCTTCCCAAAATGGCTGGGTCAAGCTTTCCTTTTCTTCTCCTCTAAAATGAT GATACGGACCGGGCGGCACGTCATATTTCTGGCGCAGTTTTTCCAGAATTTCAGGTGTCA GCTTGCTTTCTATAGCTTCGTTATGTTTTCTTCGACGCTCCTTCTCCTCTTCCAGCGCCT GCGACAATTTGGCCATTACACCCGGCTCCCAGTAATCTGCGACAGCAGACCCACAGGATA AAATATTGCCTAAAAGAAGCGCGGCACCTGCGATCTTCAAATATAAAGCTCTCATCGTTC CCCCACTCCCCCGTCGCTTGTTCCACGGAGGATGCAGAGTCTGCATCCTCCTGTGGCATA ATTATGATCCCCTGATCTTTGCTATTTCCAATTACGAAACATAGATACGTGCGGTATCGA AAATCGCGCGCTCGCGGGCGCCGATGGAGATGTTGGCCTGTGTGTAGGCTGTGCTCGCTG GCATTGTTGCGGGGTCGCTGGTGACGGCAAAGCTGAGCGCGATGGAGGCAATGCCGCTGA CTGTTTCGTAAATCGGGCCGAGGAAACGCTGCGCAACCACATCCTGAGCAATATCGAGTG CAACACCGGTATCATTCAGGGATTGCTGCACACGCAGCAGACCATCGGCGGGGAATGTTT CCTCGCTTAATGTCGTGATTTTGCAGGTGATCCAGACATAGCGCCGCACCGGCCGCGTAA AGCCGATGCTGTGCCATTCCGTGCCGTTATGCGCACCGGTGCTGATCTGCACGGTCTGGC TGTTGAGGCCGTATGCGGTGATACCGGCCGGCTTCACCGCCTGAATCTGCGCAGCGACGG CGGCGTCTTCTCCGCCCTCGACAATGCATTCGACACTGTGCGGGGGGCGTCCGTCGGTAT CAACGGCGGCTGTATCGTTTTCGATCACCATCGCGGCGGTGACACCTTGCACTTTCTGGA GCAGGCTGGCCCGGATAGAGGGCAACGTCCCGGCCCCCAGCCGATAGACACCGCGCGCAT AGCGTGCCCGCAAGGCTGAATCGGTCTCATAGGGCCGCCCTGGCATGGCATCCTGAAGAT TGAGAATACGTTTAAAGCCGGAGATCGTGTTGCTGATCGTGGTGATGGAGTTTGCAGGGG CGGTATACGGCCCGTAATCACGCGCGATAAACAGACCGGGCGTTCCCATCTCCGTCATGA TCAGCAAAGAAGATGTGGCAACGCTGATTGTTCTGCGTCCATCGGTAACGATGCGCAGAA CTGCGCTGCTGCCGCTTCCCTGCACACTGGCATTGTATCCAGCGGAGGAAACAGAAGCCA CGAACTGCGCCAGAATGGCCGGCGCATTGGCCGAGGCCGCGGTGATGCTGAAACTGACGG AGTTGAGCACAAGGGAGTAGCCTTGCCCCGCCACAGCGCTGATGACGCCGATGGAGACAT CAGCCAGAGTATCAGGGCTGATTTCGGTATCAGCCGCGAGCAGAAAACGCGTCAGCCCGG CCTGCTGAGGTGCGGCTGTTCCGGCGGGCACCAATGTGCCGGCATTGCCGTACAACACGC AGTATACCTGCGAGCGCGTGGCCTGAAGCCGGGTGACGCCCGTGAATGAAACAGCCTTGT CCAGATTGCTGCCGCTGGCGGTGGCGGGATACATGGCGTTATAGACGCCCTCCGCCATTT CCCACAGCGCGGCCTCTCTCTCGGCAAAGGTGGCGACGAGCTGACCGAGGACAGTATCCG GCTGGGTTGCGATCTCCGCCCCGAATGCATTTTGCAGGGTGGTGATGATCTCCGCGCCGA TATCGCTCATGCGGCGCTTGATGAAGCCGGACGGGGTGATGCCATAGCTGGTCATGAAAC CTGTTCCTTTCAGGAAACAAACACAAAAAAAGCCGCATCCGGTGAAGGAAGCAGCTACGA AGAAAAACGGTGGATGGTTGGGGTGGGGGCTATTCAACCAAAGTGATTGTTGATGTCCAT GTTCCAAGTTCTTTATTGTCTACAGGCATATTATTGCCATCATGTTCAATTGTACTCACA TGATAACGTTTTTTGACGATTCCAGGATGTTTGATCACAACAGGATCACCCGGGATCAAA TCGGGCCGCATCAATGAATAAACCGTTAAACCCTCTACTGGCTCATCTGAAGAAACAATT TGTTTTACATATGGATTATCGGTCGGGTTAATACCCTTCGTAAAAACAGACGCCTTTGGA CCCTTGGAAGCAACTTCGACATAGCGGATCAGACCAGTTTCCATTGACAGCAGAACCTCT GGTTTAGGGAAAGGCTGACCTTTCTTGGTGACCTGTACAACATTATTCTGGACAGAGTAT TCAAGTCCCTCAGCCTTACAGGCATCCTCAAGCATATTCTTCGATGAACCATAGAAACTA TACCCATGTTTCCAACTGCGCCTTCCAAGACCATCCACAATCTTCAGGCCCAAACCTGCA TCATGCGCAGCAGTCTCAATGATTTCCCTGACCGTTACATTCTCATACCCTGTGTAACTG GATCGAGAAGCTGATAAAATATCATTTCCATCAAATGCCGTGATGGAAATTGTATAGTCT GCATCTTTATGAGCCGTTTTAATTAGATTTGGCACTCCCACAAAAGCCAGAAAAAGATGA GACCCATATCCAGCATATATTTCCATTTTGACTGAATTTATTATAAAATCAATATTGCGT TTATTGAGATTAAAAATCGTCAAATTCATGCTATTTCCAGAATTTGTTATGGATCTCTTT ATATTAATAATAACTCTTAAATCATTAACATCATATAAATTATTTTTTCCAGAAAAAAAA CGAATCCGAATTTTTCTTTCTGATAAATTCAT
Region Details
| Region | 2 |
| Region Length | 8.6Kb |
| Completeness(score) | incomplete(30) |
| Specific Keyword | virion,plate |
| Region Position | 1731525-1740196 |
| # tRNA | 0 |
| # Total Proteins | 9 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 3 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 4 |
| Most Common Phage Name(hit genes count) | PHAGE_Erwini_phiEt88_NC_015295(2) PHAGE_Citrob_Michonne_NC_028247(1) PHAGE_Shigel_Sf17_NC_042076(1) PHAGE_Psychr_pOW20_A_NC_020841(1) PHAGE_Pseudo_PA10_NC_041903(1) PHAGE_Klebsi_JD001_NC_020204(1) PHAGE_Shigel_Sf14_NC_042075(1) PHAGE_Pseudo_vB_PaeM_C2_10_Ab02_NC_042113(1) PHAGE_Citrob_Mordin_NC_041977(1) PHAGE_Synech_S_CBP42_NC_029031(1) PHAGE_Pseudo_vB_PaeM_C2_10_Ab1_NC_019918(1) PHAGE_Klebsi_vB_KpnM_KpV79_NC_042041(1) PHAGE_Haemop_Aaphi23_NC_004827(1) PHAGE_Pseudo_PAK_P1_NC_015294(1) PHAGE_Pseudo_phiMK_NC_031110(1) PHAGE_Synech_S_CBP1_NC_025456(1) PHAGE_Entero_phi92_NC_023693(1) PHAGE_Synech_S_RIP1_NC_020867(1) PHAGE_Cyanop_S_TIM5_NC_019516(1) PHAGE_Pseudo_Zigelbrucke_NC_041904(1) PHAGE_Klebsi_vB_KpnM_KpV52_NC_041900(1) PHAGE_Cyanop_P_SSP2_NC_016656(1) PHAGE_Aggreg_S1249_NC_013597(1) PHAGE_Shigel_Sf13_NC_042017(1) PHAGE_Xantho_vB_XveM_DIBBI_NC_017981(1) |
| First Most Common Phage # | 3 |
| First Most Common Phage % | 22.22% |
| GC % | 49.95% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Region DNA
>3 1741594-1745505 CTATGCAGCAGGTGTCCCTGATCGTCCGGAGCCGGGCTGTACACCGGCATGAGTATGCGT GCTGGCTGAAATATTGTTGAACACCGCATCCTGATCACCGGTGACCTTCCCCTTGATGGT CAATCCACCAGGGAGATTCAGCACCATGCCGCCGGAGGGGGTCATTTCCATGGAGGCCGA GCCAAACGCGATCACCATATTCTCCGCATGCGCCGGCTCTGTCGCAGCGCCATGATTCAA ACCCGGCACGGCAATAGCGTCAGAGATGTTGCTTTGCCGGAAATCGTCAACAACATCATC GCCATGATCCAGCCAGTTTTCCAAAGATCGCTGACAGAAATGCAGCATAACTCCATCCCC CGGATGCAACGGCCAGGTGATCGCAACGCCGCCGCCGGTCGGAAACACCACCGGCACAGA CACCACACGCGGTGCTTTCAGGACGATCCCCTCCGGCGAGGTTTTGGACAGGGAAAGCTG CACCACCGCCCGCCGCGTTGCCGGATTATAGGAAACAATCGTCCCCGGCATTGTCGTGTT GATCCGATCGCAATGCGATGCAATCAGGTTTTTGATAATCTTCTTGAAATCAACAGCCAT AATCAAAACTCCTTACAACGATGTTTGACAGGCGACATTCACTGCCAAATCACTTCGCCA TCTGACTGGCAGGCTTGTTTGTATATTTCATCATAAAAGCCATCTCCCACCACATAGCTA TCAAGCAACCAACCGGCGTTGGACATAATCCAATCATGCTTCTGAGCGGCTCCATTATTC ATAATTTTCTGACCAGAGTAACATATAAACCAGTTTCCACTATCGTTGACTGTAATATTT GAAGATAATTCAATTATATCTTTGCCTATTCTAGGTTTATTTAATTTATCATAAAAGGAC TCATATAAATTTTTACACTCTTTGCTTCTGCATTCATGATATGGACCTGGCAGAACGCTG TACTTCTTTCTTAATTCTTCCAGAAGCTCTGGTGTCTGATTTTCTGCAATCATCTCCTGC ACTTTAAGGTCCTGCCGGTATTGCTTCTGTTGAATCAGGTTCCGCTTCTTCCAAAGCGCA TATTGATGCAGCCTCTCTGCTTCTTCCTGTTTCGTTGCAGGAACATAGATACAGCGATGA TCGATATTACAATATCTCTTCCGCTCAACACATTTTCCGTTTCGATTACAAAACATATGC CATTCAACGTGTAAATCCTCATCTCTGTCGAAAGCCAGAGCGGAACCACACATCATGGCC ACGCATAGGACCACCACCAGACCGGCAAGTTTTTGACGTTTCATTGTCATGGCCTTTTCA CTGAAATCCCGGATCGAGCCGCGTGGACGCGCCTTGCATCCAGACGCATCCATGGGAGGG GGATCGGGAAGGGGGATGGCTGACTCTCCTCCCCCTCCATCCGCCCGCTCATGCTCCCCC GATGCCGAACGGGATGCTGTCCGAAACCATCCCGAACCGGGTGCGGGCAGAGAACACGAT GGACAGGGTCCGGCTGGGGCGGTCCAGAGTCGCGGTCAGGCTTTCGACCGCCTCCACATC CGGAACCGAAGCAATCGCCGCTGCAAAAATGGATTGCAAAACGACCCGTTGCGGCTCCTT GACCAGTACATTTTGCAGGTAAGGTATTCCAAAATCGAGGTCCAAAAACCACTCTCCACG CCATGCCCGGAGGGTGATTCCGATCTCCTGACGCACTCTGGCCAACCCATCGGAGAGAAT CAGGTCTCCATTGGTCAAAAATACGTCCCGAGTCGCGTCCGCAAGAATAATGTCGTAGCC CATGCTAAATCCTTTCATATGTTACGTTGAAACTCTTTCCCGGCTTATCTTTCGGTGCCC TTCCCACCAGCAGAAACCGGGGGTGAAACAGCAGTTCGGGCAGGGGATGGAACCGGGGAA GAAGGGGGATGCATTGCGTTTTCCGGGGAGCAGACATGTGCCCACGGCCACCCGAAATCG GCGTTTTGTTGGCTTTCCAGCAGCAACGCACCCGATGATGCCATCACGAATCGGTCCGAG TCGGACCTGCTCATCCCGGCCATCCCACCCTTCAATCGGGTCGTCGAACCGCACATATAC CACTGCGATTCTCCCCCCTTCCCGTCCCGAAATCGAGTCGCATGCCCCTCTGAAATGCTG ATTCCGAGACCCAGTCTTGCTTCCAGAGCAGCCTCAGCTTCCTGTCTCATCGCTGCCGAC TCGCTGTCCGGTACGTGCTGAACGGGTTGCTGACTCACGCGAATCGGGGGCGCTTCAGCC GTGGAGAGCGCTCCATGGGTGCGGGCATGCAGCTCCGCCCGCTGTACAGCCCCCATATTG GCCAAGGCAGAGGCAGGATGAGGGGCCGTATCCAGGGGCTGGGCCATGGCGGGGCTCAGC ATCAAAACGGGCATGGCCAGCGCCATGCCACGCCGGGCAACGTCGCGGAAACGCAATAAA ATCAGTCTGGAAGCAGGGCAGAAGGGGCATGCTTTCGGCATAGGGAACGGACCGCTGGAT ACAGGGGAAAACAGAGAGGAGGCGGAGACCGTGGCGGCAGAGCATGCCTGTCGGTTCCTG CCTCTATCAGTTGCTGTTCTGCGGGCGGAAATAAGGCCGAACAAAAGCAAAACAGTGGCG TCACCACGCGGCTTTGCGCTAGATCAGCCAGTGCCGGAACCTCTGACACGGATCGTGACA CGGGCCGGAACGCAGAAAGGGGGGAGGCAGCCTTGCGGCTCCCTCCCCCCCCTTCTCTGT AGGCTGCATTGGTTGGTGCAGGCCCTTTCTAATATTTTCCGGCGCTGTTTGCCAAGGATT TATGGCGCCCCGTCAGTCCGGCCCTTCAAGAGAGGCACCCATTTCAGCGGCGGAGACATA AACCAGCGATGCCCCGCCTGCACCCGGCAGATCGCTGCGCCCGATGCGTTCCTGCCCATT TTCCAGCGCGGTATCGGGCGGGAGGGCGATGAGTTCTCCTTGCGGCATGGCCTCGGTGCG ATAACGCCCGATCAGAGGCGTGTTGCCCAGCACGGGCAGCCCCTCCAACAGGGTGGTGCG GGTGGCATCCTGAAGCCCGAGGGTCCAGAACCCGGCCTCGCTGTTCCAGGACAGATGCAG GAAGAAGCTCTGGCCATCCAGTTCGGCCTCCATCACGCTGTCATTCAGATCGGGCACGGA AATCAGCTGCATATCTGGTTTCCTTTACGGTCAGGCCGTCAGGCCGAGCGCGGTTGCAAC CCGCGTGATCAGGCTCGGGGGTGGGGTGGCGGATTGCGCTTTTCCAGCGGGAATGGCGGA GGATCCGGTCTTGCCGCTGACCTCGGCGGCGGCATTGCCGCTGACCGCCACATCGGCCTG CACGATGCGTATCTGAAGGAAATCGAGCTTGATCTTCAGGGTGCGGCTCTGGGATTCGCC ATCTTTCGTGATCCCGCGATTGATCTCGCAACCGGTCATGGCCATGTTCGGGTAGACATG CAGCCCGGTCACCACTGTGACAGGAAGATGGGCGGTATGGAGCTCCTCCAGCAGCTTGAC GGTATCCTCCAGCCGCGAAATCCCGCGCAGGCCCAGATTCCATGGCCGAAACAGCGTGGC ATTGGCCGAGGACACCGCCCCCGTGATAGTCAGCCGCGCCGATTGCGGGATGATGCCGTC GGAAATCGGCATGCCCTGTTCCACCGGATATTGCGTGGCGAGGGAGGGCAGCTGATAGCT CTCCATACTCAGCAGATCCAGATGCAGCGCCCCCTTGGTGGCGGGGACAGGAGCGGGTCT GGTTTGGCCCGTATTGGCAGCCCCTCCCCCGCCTTTATCAATGGGCGCAAGCGTAATGTG CCTGGGAGTCGCCTGATATTCCAGATAGGTCTGGCCGGAGGCGCCAAAAATCAGATCCAG CGTGTTCAGCAT
Region Details
| Region | 3 |
| Region Length | 3.9Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | plate |
| Region Position | 1741594-1745505 |
| # tRNA | 0 |
| # Total Proteins | 6 |
| # Phage Hit Proteins | 4 |
| # Hypothetical Proteins | 2 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 2 |
| Most Common Phage Name(hit genes count) | PHAGE_Erwini_phiEt88_NC_015295(3) PHAGE_Entero_phi92_NC_023693(2) PHAGE_Xantho_vB_XveM_DIBBI_NC_017981(2) PHAGE_Psychr_pOW20_A_NC_020841(1) PHAGE_Pseudo_vB_PsyM_KIL1_NC_030934(1) PHAGE_Escher_phAPEC8_NC_020079(1) PHAGE_Aggreg_S1249_NC_013597(1) PHAGE_Haemop_Aaphi23_NC_004827(1) PHAGE_Salmon_SEN34_NC_028699(1) |
| First Most Common Phage # | 3 |
| First Most Common Phage % | 50% |
| GC % | 56.65% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Region DNA
>4 1748649-1757516 TCAGGATTTACGGAAAGCTGTGGCGAGCTGCGGGGACACCGCCGTAATGCTCCAGACCCG CGTGCTTCCCTTCGCGCTGCGCTCATGACCGGCCCGGCCATTGATCCAGCAGGTACCGGC GGAGAACAGCAGCCCACCCCCCAGATCCTCGATCAGGATCGGCACCGGAATGCTGCCATT CGACAGACGATCCGCCGTATACAGCGCATCAAGATGCTCGTTGCTCGGGCTGCTTTGCAG CAGGGTCAGCGTGATCTTGACCCGCGGATCAACACTGAAACTGCGCATGACTTCCCCATC CGCACCAACGCTGGAATCGAAGCCGGCGCTCTGTTCATCGACCGTAATGAACTTGTCGCT GGAAAAACCGCTGATCGCTACACCACCGATCACGACGTACACATTGGACGGAGAATAATT ATAGACATTGCCTGCCATGATCATCATTCCTCAAAAAATGGAAATTTCTGTGCTCAGATT GTGTAGGACAACGTGCCGTTGATCTGGACCAGATGCACCGCCCCAGCCAGACGCGCCCGG AAACTGATGTCACGCAGAACACGACTTGCTTTGGTATTGGCGGAAATATTGGCAGAAAGC GGAACCGAAATCGTGTAGGAAGGAATCGGGTTGTTATTACCATCCAGCTCCGGCGGCGCG ATCCCGCCCCGGCGCACACCCAGATCGAGTGCCGCCTGCACCTTGCTTTTCACCATCAGA ATACCCTGATCGGTATAAGGAATACGGTTATCGACCATCAGCTGGAACACGCTGGTCTTG ATCTCTTCCTGCAACCAGTCGCGGAAGCGGATGACATCGATCCACTCGCCACCTGTGGTT TTTCCGCCCTGGGTGATGGTGACATTGCGGAAGCTTTCGAACGTGTTACCGTTCTTGCCG CGCACGGCGCTGCTCTGTCCTTCCCCCAGCGTATCGGCGCTGACACCGGGCAGCGTGCAG TTGGCCCAGCTTTCCTGACCCGGATAGAGGGTGAACATTTTCGACATCACCGCCGCATCC GGGAAATCGGTCGCCGCTGCTGCATGATAGAAGCAGAAGGTGCGGAAGTAATTTGCAGCC TTCAGCAGCGATAGCGTATCGGTGGTCTTGGTCGAGTCCAGCGCATCAGTTTCCGCAATC GCCGTGCCGAAAAGTTTACCATTGGCTTCGGTCCATGCCGCGGCTTCCAGAATGGTGTTT TTGTCACGGCTCGGCAGGATCAGGCCGTACCAGCTATTATCGCTGGTCTTCATGGCCGAG AGTGCGGCCGTCAGTGTTTCATTCTGGCTGCTGCCATCCCAGAAGCCGATATAAATCTGT GAGATATGCGGTGTCACGCTGAACGCATCCGCGGCGGCAAGATAGGCCGGATGCGTGGCC GTCAGCCCGTACGGAGCAGACAGCAGATCACTGGCAGAGGTGATAATACCCGTGCGCGGC AGAGAGGCAGTGCTTTTCAGCACGATCAGCATATCGCTGAAACTCTGCGTATTCACGGAA GCAGATTGCAGCAGAATATTGACCGTGACGAGGCGATCGAGATTAGCCATGCGGCGTCTC CATTTCGATGTTCAGGGAAAGGGGGACTGGCGCACCGCCCCCCGGCAATGTTCCGGTAGC CTGAACCTTTTCGATCAGGCCGACCGCATCCGCGCCACGCATGACATGACCGAGCGTCAA CTCCATGGCCGCCCGCTCCTCCCATGTCGTCTCCAGCAAGGCGGAGATATTGAGGACGGG GCCGCAGGACAGCACGGCAATGCCATGCAGAAAGGCATTGTCCTGCGTGGTGGGGAAACC CAGTCTCTGACGCAGCGTATCCAGAGTATTCAGTGCAGACGGGCCGAAAACCTGAATTTC CAGCGTGTCCTGCATGGGTGTTTCCACCACCATCAGCCCATCCGCATTGACGGCGCCATA CCAAGGCCGTGCGATGGGTCTGCTCCCCTCCTCACTGCGCAGCCAGCGCAGGGTGGCGTA TGGAAAAGCCGGGCGGGGTGCATTCTGCTCCGCCCAGATCAGCGCGCAGTCGAGCATCGG CTGCACGAAACCGTGCACCGTGCCATCATCCAGCATGATGGAACTCCCTTACGGTTCGAG TGAGGCGAGGTAACGGTGATGATCCACCCGCATCCCGGCATCCCAGGATTGCCGCGCGAT GATGCGATAACGGCGCGGAGCGGTGTCTCCGGCGGTGGTATACAGCACGCAATCTCCGCG CTGACTGGATGCATTCCCGATACCCAGTACGGCATCGGTATAAATCCGGATCAGCGCAGT GATCGCCTGACCACCGGGCAGAGGCTGTATCTGCTCTGCATCACTGACGGAGGCAGGCTG CACCGTGGCAGAGATGGTCTGTGTCACCGGAGAAGCCGGGACGAAACGGCCGGCAACATA GCTGCCCGTTCCTTCCCTCAATACCGTCAAAGACTGGCGGAAACTGGTTTTCATGCCTCA TCCCCCATACTGACGGGAAACCGGCCATCGACCAGGGCCGATATCTGATCCAGCAACCAC TCCTCCGGCTCACCACCCCCCAGCGCGAGGGCAGCAGCCTCCGCACAGGCATCGGCGATG CGGTCGGCCTGCGCGTCGGTGAAAGCGCGCAGATAAGGGCGCGCGGCCATGGTGCCGGAA CCGAACTCTGCCTCTACGGCCGCGGCGACATCTCCGGTTTGATTATCCTCGCGCTCTCCC TCATGCTCTCTGGGGCCGATGCGCAGGCTCATCCCCTCCAGACGGGATAAAGCCGTTCCG AGCGTATCCATCATCCCGGCTCCCCGGTCAGAACCGCACCGGTCGATAAAGGACGCAGCA GCGCCTCATACCGCGCCCGGTAATTGCCTGCCGCCTCGGCTTCGGCGCCTGTCAGGGCGC GCGGGAGATATTCAATCTCCAGCTCGCCTTCCTTTTCCCGCCGCAGCGCCTGCCCCGCAC CGGCGGTCCCGCTACCGGACAGGGAAGAGGCGCGCAGGCTCAGCAGCCATGCCGCATACA GCGCCATGGCCTCCTGCCTGCGACCGGGGGAGAGTGTGGCGGGGCAATGTGCCGCCGCCA CGCCCAGCGCATCCGTCACCGCCTGAGCCGGAACATCGGCGAATTCCGGTGCCAGAATAG CCAGCAGCACCGGAGCCGGATAAGGCGCTGATGCGTCACCCATCGCCTACACCCCATCCA GATAGCGGATCGCACCCGGCTTGCGGATATCGACCCCGCCGAGACGGAAAATCCCCGGTA CCTCGAACCGCATCGGCCCGCTCTGCCAGGGGGCGAGGAACTGAAGCGGCATCGGGATAT GCAGCTTCATCACATCCGGCGCCCGACGATAGACGATCATGCGGCCGACGCCGGAGGCTC CGGCGCTTTCCAGACCAGGAATACCGCGCACAGTCAGCGGCAGGCCGGTGGTCAGCGTGT AGATATTGGTGCGGGCGAGGAAGCTCAGCGCGGTCTCGCTGGTGGCGGGAATGCGCGTCT GGGAAAGCTTCAGCCAGCGATCCACCGGCAACAGCACGGTATCGGCCATCTCCACCCGCA GCGATGCGGTCTGGATACCGGTCAGCGCCGCATTCACATCGTCGATGATCTCATCAACGG TTTTATGCGCCCAGTCCGGATTGCCGGAGGCTCCATTGGCCACCGTACCCGCCGTGACCG CCGGATGAGACAGCAAACCGCTGAACCCGCGCACCGCATCGCCGCGCAGCACGATGTCAT CGACGAATTCCTCGTAGGCACGGCGTGCCGCCTCAGCTTTTTCCGGGCCGAGATCGATGC CGTACTGGCGTGCATGTTCCAGTTCGGCCAGATCATAACCATAGCCGATCGCGGCCATGG AGACAGTGACGCGCAGCCTGTCGCGCACGATATCGGCACGCGGCACATCCTGCGCCTGAC CGTTGAACCATTGGGCGCGGCCCACCGTGTCGGCGGAAACATATTCCACCACCTGGATCC ATTCCGGCGCGGTGGTATCCACCGGGATCAGGGACGGATACAGAATATCGGCATATTGAA TGCGATAGATTTCGGCTTCCAGCGCGGCGGCCTGACTGACCAGAAAGCTCAGTCCGGTCT GCGCATCGAACCGGGTATGCTGAAGGGAGCTGTTCATTCTTCCAGAACTTTCTTGTAAGG ATCAGGACAGACGCAGACGGGCCAGACCGCCCGCAGGGGCGCTGGTGTCGAAGGTCGCAT TCGGAATGGCGGTGTTATTGGAGGATGCAGCCGTGATCGCCCCGGCGGGGGTCAGATAGG CGGCTGCACCGGCGCTGACGCCGGCGGCGACACGCACCCAGATCACACCCTTGTTGAGCA CGGAGAGCGGCGATCCGGCGGGATAGGTATCCACCGCCTGCCCCATCAGCGCAGGCACGG TATGCACGGCGAGCGCGATCCCCAGAAACCGCGCGGCGGTCGCGGAAGGAAGACGCACGC TCTGATCTTTCACACCCTGAACAACGGGTTTTCCAAAAGCGATGTCGGTGTCGGCAATGC GGGTCAGGATGGTGACCGGTTCGGCATTGGCCTGCATGCCCTCATACGCATCGGGATGAC GGGCGGCGTAGCTGGTTTGCAGCGGCGGCATGTTCAGTGTTCTCCTGCATGGGAAGGCGG CGTGGAACGCCACGCAGCGGAAAGGGTCGCCTTGTAGGTTTCATAGGCACTCAGCGGAGT TTTCTGACGGGATGCCGCTTCATCCCGGCGCTGTGCGACGCTGTACTGCGCCTGCACCGC GCCTGCCTGCATCCGCGCCTCTGCCACACAGAGATCAAATGCAGCTTGCAGATAGGCGGA GGATTGCCCCTCCAGCACCAGCGCATCGCCCCGCACAGCGCGGATCACAGCGATACGCAG CTCATCATCGGAGGCATCATCATGGATCCTGACACCAAGACCGGCAGCATCCTGTTCCAG ATTTTGACGGGCCTGCCTTATTTTTTCCTGCTCCAGCCGCGCCGCATCGGCACGGGCGGC ATCCCGCTCCGCGGTTACCACCGCCAGTGCCGCATGAAGCGGACAATCCGGCGTGCAGGC GGGCGCCGTATCGGCACGATCCAGATTCAGCCGTGCATTGCCCGCACGCCCCCGCGGGAC AATGGCTACGTGATTGACACGAATGCCGCGTTGCACGGCATCATAGGGTTCACCATCCAC CTCACCCGGCGTTTCATCCAGATCGAGACGATAGCCAACGGACAGATCACGCAGACCTTC ATCGACAGCAGCGGTATCATGAATCACAATGTCGGCAACAAGGTTTTCTCCATCCTGCCG ACCCTCGCTCATTACCGTACCGACAACTGCTCCCGCTGCATTGGCTGCGGTGATCAGGCC CGATATCGGTGGCGGATGACCCACCGTGATCGGACGCCCGCGGAAACTGGAAAGACTGTC CGCATGAAAGACTTCTTCCGGCGGACGATATTCGCGCCGCTGCGCACCCGTCATCGGATC GGTGTAAGTAAAAATGCCGGTGCGCGTCAGTACCGGCGTATCGGTGATGAACCCGTCATC ATCGCGATGCGCGCGCGGCAGCGGCACCATGTCATGGCGCTCGGTAATCATGCTTGCTCC TGACTGTAAAATTGTGACTCAGAGAGTCTTTGAAGCGGTGCCGGACAAGGTTTCCGCCTG CACCTCCGCCTGCACCCTGGCCAGAGTGGCCTGTGCGTTTTTCAGCGCAGCATCGGCCTG TTCCGTTTCACTGGGAATCCATTGTGGCGGGAAAACCAGTTTCCAACTCTCTGGTATGGA AGCCCGCAATCCTCTCTGCTGCCATAGCAAGGACACCAGACGTTCCAGTGGCGGGACCAG TACGCGCCGCTGCATCGCCTGCACCACCGCGATATACACTTCCCGATCCCCTTCCCCGGT CGCGTTCTGACCGGCGGCGGAACGCCCGAACAGATGCGTCACCGGAATACCGGTGCAGGC AGCAATGGAAATCTCGAATGCCTCAATCTGGTCGCTGACACCGGAAAGATTGAGATCATG AACCTGCCACTGATCCCCGGCATCAATGACCACGGTGTTCAACACGTTGCGCGCCAGATC GACCCGGCGCACACGCTCCCGCACGCTTTCCAGCAAGGGCGAGTTCGCGGGATCAGCTGC CTCCATCGCCGCCTGACGCAGCAGCTCCCCGAGGCCAGCCATACCGAACACCGCCTGTTG CTTGCGTTCCAGCATGCCGCGAGACAGCCGCAGCGCATCCTGATAACGCTGAACCTCCTC CAGACATCCGCTCAGCACCGAGCGTCCGCGCCAGGGCAGACCGTTGCTCATGCCGTGGGG CAGCGGCGCACCCGGCAGAGGCAGTAACCGCGTCTCATGCACCGTGAACATCGTGCCACC ACCGCGCGGTGTCACGCGATACGCCATCGGCTGACCACAGCGTGCATCGGCGGGATCATC GTAAAGCTGATCCACCGTAATTTCCTCGGCATCGAACACCCGTAGTTCAGCAATGCCGGA CAGGGAAGAGAGGCGCAAAGGACGCTGTGGGTCTACCTCATCATCGGCGAACAGCATCAC GGCTGCTCCACCGAACAGACGTGCCCAGCGCAACGCCTCCGTCATCCGTGCCGGAACATG CAACCGGGCGATCTCCGCCGCCATCGCCTGTTCCGCCGCCGCGTCACCATCGCATAGAAC AGTGATACCCCGTGACAGCGCATCTTCCGCCGGAGCATCGACAATCCGTGCCGCCAATCC TCCCTGAAGATAGGCTGATAAAACCGTACCAGCCGCGCGCGTGTCGCCAGGCATCATCAG CGTTCCCGGCTGCACAGCACCGAGCACGCCGGACAGATAATCATCGAGCCGCGTGCCCAT GATTGCATCCTTGCACAGAATAAAAACTGATTTTTAAAGATAGGCGAGGAAAGATGCCCG CGTGTCCCGCCCCTGCGTCAGCGCCAGAAAAGCGCGGGACAGCGCATCCACCTGATCGTC ATGTCTCGCTGAGGGAAACCCCGCCAGCTCATCCAGCAACGCCGCCTGCCATGCACCCGG CAGCATATCGACATTGCCCGCATTCACCTGCGCCGCAAACGGCATGGCGCGGGTGGATTT ATCGCCGCTCTCCGGCGAGGTCTCGACGACATAACCGCCGAGCATCCGCGCCAGATAAGC CGCCTGTGCCTTGCCTGCCTGACCGGGATCACGCGGGATGGAAATGCGCACCGACACGCC ATCCCGGCTGGCCGTGGCGGCGATGATGCGCGTCACATCCTCCGGCCCGCCACGCAGACG CACGATATCGCCAATGACAAAACGTCCCGCGGCATCGCGGCCCAGCCGCGCCCCCACCGT CCAGTCGGGATCACCGGTGCCGGTCTGGCGCGTCGCCGCCAGATCCCAGGCCCGCACCCA TTGCACAGAGAAAGGGGCTGCAAGAATGCAGGATAGAGCAGCCGTTTTGAACAACGCACC CTCCGCAGGGCGCGGCTGCTGCTGATACAGCGCCGCCCAATCCCGCATCGCGCCACCGCG TTCGTACTCCGCTTTCACACGCTGCAATTCACCGGCATAGCCGTAGGAATCATCTCCCCA CAGCCATTCGCCCGGTATACGGCCCAGCGGATCATTGTCCTCGGCCTGCGCCGGCAGATT GACGCGGCGCCATGACGATCCCTGACGCAGCAACAGGCGGCCGCCCAGATCATCCTCATG CCACCGTGTCATGATCACCACGATGCGGCCACCTGGTTTCATACGGGTACGCAGATCAGC CCCGAACCAGTTCCACACACGCTCCCGGCAGGCACGGCTATCGGCATCGGCCCTTGATTT GACAGGATCATCGATGATTGCCACATCGGCACGCCGTCCGGCAATCGGGCCGCCGATACC AACGGCCTTATAGGCCGATCCGTTCTCCGCCTCCCAATCCCTTGCATTTTCACGCCGCAA TCCGGTGCCAAGAATGGAAGCGTAATCACGCAGACAGGATTGCACGCCACGACTGACATG ATCAGCCAGATCGGCGGTGTGGGAGGCACCGATCACACGAATTCCAGATTGCAGCGCCAT CAACCATGCAGGGAAAATACGGCTGGCATAAGTCGATTTCGCCGATCCGGGCGGCATGGT GATCAACAGACGATCGACTGTTCCATGCGCCACCGCCTGCAATTCTTTCAACAGCAAATG ATGATGCGCAGCCGGATAAAGATTCTGTTCCGCCATAACCAGGCGGGCAAACTCCGGAAG GCTCTCCCTTGCTGCCAGATCGCGCAGGCGGCGACGCAGCGCCAGTTCCCGTCTGAGCGC TGTATCCACCGCCTGCATCGACATATCAGGTAAATCCTAGGTTTTTTTCTGATGGGCGCG GAGGGAATCCAGTTCCGCCTCGATCTCCGCACGGCTCATGGCCTGCGCTGGATCGCGGGA GGGAGCCTCCCTGAACAATCCCAGTGCTCGCCCCAGCTCAACCAGAGCGGCGCGTTTGTC AGCCAGCTTGACCCGCAGGCCACGTGGCGTTTCAACCACTTCCTCGATCGCAAAAGCGGT ATCGTCATCGAGTGAGGAAGAGGCCTTGACCCGCAACCCGTCCTCTGACCATTCCAGCAC ATCACGCGCATCATAAAATGCCAGACGCGCCAAAGCCGCTACTATATTTTCCTTTGTTAC AGGCTGCATCATTTTCTTTTTATCTGCTTCTGTCTCTTGCTGCGCCTCATGCGCCAAAGC CGCACGGATGGCGGCACTGTTGAGGCAGCGCCTTGCCCCCGCTGCAATCTGCGCCGGCGA GAGATCAGGACCGTAGCTGACAGCATAAGCCTGCTCGGCATTGCCCTTCAGCGCGGCATA GGCCACCACGAATTTCTGCTGCCGATCTGTAAGAGAAAAGCGTGTCAC
Region Details
| Region | 4 |
| Region Length | 8.8Kb |
| Completeness(score) | incomplete(40) |
| Specific Keyword | capsid,portal,terminase |
| Region Position | 1748649-1757516 |
| # tRNA | 0 |
| # Total Proteins | 12 |
| # Phage Hit Proteins | 9 |
| # Hypothetical Proteins | 2 |
| Phage + Hypothetical Protein % | 91.6% |
| # Bacterial Proteins | 1 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Erwini_phiEt88_NC_015295(4) PHAGE_Xantho_vB_XveM_DIBBI_NC_017981(3) PHAGE_Rhizob_RHEph04_NC_041908(2) PHAGE_Pseudo_vB_PsyM_KIL4_NC_042054(2) PHAGE_Rhizob_RHEph06_NC_027296(2) PHAGE_Escher_Rtp_NC_007603(2) PHAGE_Pseudo_vB_PsyM_KIL1_NC_030934(1) PHAGE_Escher_e4/1c_NC_024210(1) PHAGE_Pseudo_vB_PaeM_G1_NC_041968(1) PHAGE_Klebsi_JD001_NC_020204(1) PHAGE_Pseudo_phiPsa374_NC_023601(1) PHAGE_Klebsi_vB_KpnM_KpV79_NC_042041(1) PHAGE_Vibrio_CP_T1_NC_019457(1) PHAGE_Pseudo_vB_PaeM_PAO1_Ab03_NC_026587(1) PHAGE_Escher_C119_NC_042046(1) PHAGE_Lister_B054_NC_009813(1) PHAGE_Escher_KP26_NC_042038(1) PHAGE_Lactoc_98201_NC_031064(1) PHAGE_Acinet_Bphi_B1251_NC_019541(1) PHAGE_Acinet_YMC11/11/R3177_NC_041866(1) PHAGE_Klebsi_1513_NC_028786(1) PHAGE_Escher_EB49_NC_023743(1) PHAGE_Pseudo_phiPSA1_NC_024365(1) PHAGE_Pectob_ZF40_NC_019522(1) PHAGE_Lactoc_28201_NC_031013(1) PHAGE_Klebsi_vB_KpnM_KpV52_NC_041900(1) PHAGE_Sinorh_phiLM21_NC_029046(1) PHAGE_Pseudo_VCM_NC_029065(1) |
| First Most Common Phage # | 4 |
| First Most Common Phage % | 33.33% |
| GC % | 61.12% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|CP018192.1| Granulibacter bethesdensis strain NIH6.1 chromosome, complete 2690741, gc%: 58.55%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 8 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(108747..109778) | PHAGE_Prochl_P_TIM68_NC_028955: putative zinc-containing alcohol dehydrogenase superfamily protein; GbCGDNIH6_0098; phage(gi971760362) | 1.86e-06 | Showinfo_outline |
| 2 | 109867..110337 | PHAGE_Erwini_phiEa2809_NC_027340: membrane-flanked domain protein; GbCGDNIH6_0099; phage(gi849120217) | 3.61e-12 | Showinfo_outline |
| 3 | 110334..111014 | Ribosomal large subunit pseudouridine synthase A; GbCGDNIH6_0100 | 0.0 | Showinfo_outline |
| 4 | 111116..111292 | Hypothetical protein; GbCGDNIH6_7202 | 0.0 | Showinfo_outline |
| 5 | 111330..112379 | PHAGE_Entero_phi92_NC_023693: Phi92_gp067; GbCGDNIH6_0102; phage(gi726647000) | 1.54e-113 | Showinfo_outline |
| 6 | 112383..113258 | PHAGE_Entero_phi92_NC_023693: Phi92_gp066; GbCGDNIH6_0103; phage(gi726646999) | 1.80e-112 | Showinfo_outline |
| 7 | 113312..113878 | PHAGE_Entero_phi92_NC_023693: Phi92_gp065; GbCGDNIH6_0104; phage(gi726646998) | 3.06e-43 | Showinfo_outline |
| 8 | 113875..114780 | PHAGE_Entero_phi92_NC_023693: Phi92_gp064; GbCGDNIH6_0105; phage(gi726646997) | 1.52e-35 | Showinfo_outline |
Sequence
>complement(108747..109778)
GranulibacterbethesdensisMKLYRLPGPHGIVPQGFDSLYTTEAPEPKPRRGQVLVRLRAASLNYRDLLVARGQYPLSPVPPDLIPLSDGAGEVIETGEDVTRFQPGDRVAPCFFQSWHDGPITERDGASALGGAIHGVLTEYAVFEQDGLVRIPDHLSWEEAACLPCAAVTAWHALFGSTPVQPGQTVLTQGTGGVSIFAIQFAKAAGARVITTSSSDKKLSRAQALGADEGINYRSRPDWHKAATALTGGLGVDHVVEVGGAGTLWQSIRAARLGGQIHLIGVLSGQNEINPMPLMARSQTLRGIYVGSRAMFEAMNIAISQHRIKPVIDRVFPFAEAVAAYRHLESATHLGKVVIRLDE
Sequence
>109867..110337
GranulibacterbethesdensisMATYVRSILQDDEYVLFVTRLHWVIYARAMVCIMAAPLLSGTLAGAVESQGMRTLALGGGLVLMALGLYAALKAWWRRYGTEIVVTDRRVIHKQGVLVRRTVDMNAVRIESVDVEQGLVGRWLGYGDVTLRGTGGGMETIRRVARPLDLRNAALAE
Sequence
>110334..111014
GranulibacterbethesdensisMTPRDLLRAGPDILYQDQHFVVLNKPAGLPAHAGPAGGPSVEDWFPLLSRRKEGPWLAHRLDTDTSGCLIIALRKTPLLEAQAMFAKGQAGKRYWAVVRGAPPAAEGRIDRKLSRRSESGEAGRGRWRMVEDAQGQSASTSWRVMEQQHGLSWLELSPLTGRTHQLRVHCALLGCPILGDPVYGDGKNAPLCLLACEIRLPLDPVMIVRAPVPAHMQRYGFSFPSP
Sequence
>111116..111292
GranulibacterbethesdensisMSDVNFQNRSIPELKIPVRLLNHSLNSSHKFETVSTVRVQTMKKFKSSLAGDRQGCND
Sequence
>111330..112379
GranulibacterbethesdensisMRILVTGGCGFIGSAVIRHLIRDTAHSVVNVDKMTYAASEDALEEALTDPRHTLVKADICDAAAIAQVFATHRPDAVMHLAAESHVDRSIDGPAQFVQTNVVGTLVMLEAAREHWAKHRPEGGGRFHHISTDEVFGALENGDPPFTETTSYDPRSPYSASKAGSDHLVRAWQHTYAMPTFVSNTTNNYGPWQFPEKLIPLVTLNALEGKELPVYGDGSNQRDWLYVDDHAEALVRTLERGEPGGTYAIGARQPRSNLEVVRTICAVLDELVPDAGGKRERLIRFVTDRPGHDFRYEIDPSRAEAALDWKAPHDFEKGIRRTVQWYLDHRAWWEGIRSGRYAGQRLGTAS
Sequence
>112383..113258
GranulibacterbethesdensisMKKGIILAGGSGTRLHPMTLAASKQLLPVYDKPMIYYPLSTLMLAGIRDILIISTPEDLPQFQRLLGTGERFGVKFNYAVQPKPEGLAQAFLIGRDWLEGQACALALGDNLIFADHLSVMLRAAASRPEGATVFAYRVRDPERYGVVSFDDAGRALEIVEKPAAPQSNWAVTGLYFYDEKVSEYAAAVKPSPRGELEITDINRMYLESHTLHVERLGRGCAWLDAGTCDSLLHAATFVQTIQDRQGLLVGCPEEVAFRMGFIDADQLKAQARLLAKTELGRLLAELVEGAQ
Sequence
>113312..113878
GranulibacterbethesdensisMKFERLAIPEVILVTPDRFGDNRGFFSETYQHRKYAEGGIAGTFVQDNHSLSAQRGTIRGLHCQVAPNVQGKLVRCVRGAIWDVAVDARTGSPTYGQWVAAELSAENWQQLWVPGGFLHAFCTLQPDTEVIYKVTGDYDKSAERGVIWNDAELNLPWPVAPEEVVTSEKDLQLPPFSAAKGWFTYGEQ
Sequence
>113875..114780
GranulibacterbethesdensisMSMSGPILVTGGSGQVALALEEAAKARDVSVRRVGRPEFDFDRPDSIETVFREVSPSLVVNAAAYTTVDAAESDVAAAERANRDGPARLAELCAVAGIPLIHISTDYVFDGSKGAPYVETDPTNPTGVYGRTKLAGEDAVLATCRQAIVLRTAWVVSHTGKNFVKTMLNAARKTDTLRVVADQQGNPTSAADLAEAILDIAKKLEKGWNDTYFGPTHAAGTGATTWHGLAEAVFEQAAKHGAPRPAVHPIKTSDWPTPARRPADSRLDCTRLETVFGVRMPDWQGSIALIVDQLSTEGAPG
Region 2, total 9 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(1731525..1733222) | PHAGE_Cyanop_S_TIM5_NC_019516: virion structural protein; GbCGDNIH6_1552; phage(gi422936245) | 4.81e-22 | Showinfo_outline |
| 2 | complement(1733219..1734592) | PHAGE_Pseudo_vB_PaeM_C2_10_Ab02_NC_042113: hypothetical protein; GbCGDNIH6_1553; phage(gi100088) | 1.00e-10 | Showinfo_outline |
| 3 | 1734587..1734724 | hypothetical protein; GbCGDNIH6_5067 | 0.0 | Showinfo_outline |
| 4 | complement(1734804..1735406) | PHAGE_Erwini_phiEt88_NC_015295: phage baseplate assembly protein V; GbCGDNIH6_1554; phage(gi327198581) | 6.18e-18 | Showinfo_outline |
| 5 | complement(1735428..1736480) | PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; GbCGDNIH6_1555; phage(gi327198580) | 1.06e-12 | Showinfo_outline |
| 6 | complement(1736450..1736983) | Hypothetical protein; GbCGDNIH6_1560 | 0.0 | Showinfo_outline |
| 7 | complement(1737115..1737690) | Hypothetical protein; GbCGDNIH6_1560a | 0.0 | Showinfo_outline |
| 8 | complement(1737736..1739331) | PHAGE_Shigel_Sf14_NC_042075: co-chaperonin for GroEL; GbCGDNIH6_1561; phage(gi100075) | 2.88e-51 | Showinfo_outline |
| 9 | complement(1739294..1740196) | PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; GbCGDNIH6_1562; phage(gi327198580) | 9.71e-13 | Showinfo_outline |
Sequence
>complement(1731525..1733222)
GranulibacterbethesdensisMNSLVLIFLTSTLTGKSMSFFDRFSSLWASQGTASPPSDTQSDQGFSYLGQIPPSVELFNGLFQERDWKIKWLYQQISSVIGLDGSTPSETETGKAGGVLAKWFAPIKNPAFQGGATIYGPLEIGSQSVRSTPYIDFHTDGTNTDYNARIIAVGGTQGQSASAGLIISSATLEVGGDMTADKSLLVTGGITANGGITANGGASFKKTMYVGGGSTNASSLYVDDNSGAATWAGYFSGSAYVSKKFQVDGGATINGGDLSVSNNMKANGAVTGQTVYALNGGFSTSGGLYVATSASVGTLSVTKGSGNNSSLYASDNSGAATWAGYFSGSLYCSSKIETANRVYAHNYVCTGPTDGNFTPANNGANGCSMTPTGFNAYSASGPAAAFGTNGSNNQIIAFSAGTSGGVQWIGSIGSNGSSVQYNTTSDYRLKTSITDLDQSAAAEKILNIHIKNFAFISHPDRIVTGVIAHELQAVIPEAVTGEHDGTRHVDNVVIRDGTVAWENVTETTYQAAKEQNPDLWNGTEWHASCEVPDYQQVDYSKLVPMLTAALQNALTRIATLEAKVK
Sequence
>complement(1733219..1734592)
GranulibacterbethesdensisMHAGFCASAVSDCSGHCHMIAQNELNTAFGTKRESAASYITADGKLVITGPNVLRPSYADDGSYLGALTEGASTNYLPDSMLTTSQKSWSGNYASIVTSRLMKDGFSCLQFDFPALNSAASAQMSLGDPVSAQAGETWWLSAWGLMIGNSASVPVVSLRLSSGSANVTQAFPSGNASGRLVRIRVSLQVPAGQNTVSASLVVNGAAGGNAVSMVFSASQLEKNRVSSFIPTSNGFASRVSDRVFYIADADPGNGQVPDATNMVFGRDHGVVAWEHMLAQFSASSSLQSLVKALYPACTTLDTALQAMMNNRVLDQASGDQLDGIGDILGQSRLVGPASAIMLTDDQYRRLLKLKILLNNAHGTTEDLRAAFCVLFNADSTLLQDNGDASLTAVVGRFITASDLAFARSIAGFPKPAGVGLVQMQYDPARPFGFQQQSYMGFGSGCMARALDNIIPSS
Sequence
>1734587..1734724
GranulibacterbethesdensisMHDTYRITTSADQEKRVEKTSAFSKRPKETSLLDRVRRNVFMHRL
Sequence
>complement(1734804..1735406)
GranulibacterbethesdensisMSEDIKQILKNLIASHCDRINTTMPGTIVSYDPATRRAEVQLSLSKTSPDAEIIKAPRVVDVPVVFPSVGPVGITWPLHSGDGVMLHFCQRSLENWKDAGSDIVDNFRQTHITDAIAVPGLAHSQATSPAHPDNMVIAFGSASVEFTSSGSLILNAPGGLTINGAVSGDQDAVFNGISVKTHAHSGVQPGSGRSGPPSAS
Sequence
>complement(1735428..1736480)
GranulibacterbethesdensisMPIRWRSGKMKYLNNRKYKVIFDGSDIIKKYTKIKAKINIKRMYNNSGNSIKVDLYNINRDYLDSIIRSKYLEVYCGYESGLFSLAFSGSPYAIKTGQRNADSIVTVVGFDGSDVLSRSLISFTGEKGIPVRDIIEAAATNAKMPLYMADGIGARRLKSGFSFYGSAKDMLESICHSSGLQYSVQNQTIQVTRKGETTTRPSVLLSMETGLIRYIDRTFMGPRSSAIIKDLNTADNPYLKELVSSIGTEEGVQVYSLMRPDINPGDPVWLKQGKGYEKFRVDTIEHNGDTMPVENSELGTWTSTINLISLKKFTFKLDKETKDDLPSLTKAIPAEKKRQAETDPFGFKFY
Sequence
>complement(1736450..1736983)
GranulibacterbethesdensisMEYQTMKYKTLVIAGLLLGNVLSCGSAVADYWDPKLVAKLSKALQEEMERRRKHDEAIESKLTPEILEKLRQKYDVPPGPYHLYRGEEEERLTQPFWEELQRRNPNLTWLQSHMTVNEQGDWFVCIASEEILKNHIHRPDVSIKSSRGWTLYNDEFGGKFLMQIDHKACLSDGEVVK
Sequence
>complement(1737115..1737690)
GranulibacterbethesdensisMQTLHPPWNKRRGSGGTMRALYLKIAGAALLLGNILSCGSAVADYWEPGVMAKLSQALEEEKERRRKHNEAIESKLTPEILEKLRQKYDVPPGPYHHFRGEEKESLTQPFWEELQRRNPNLSLLYTHMTVNEQGDWFVCILTEEILKNHIHRPEISIKSSRGWTLYDNEFGEKFLMEIRHKACETDGEIVK
Sequence
>complement(1737736..1739331)
GranulibacterbethesdensisMEHGHQQSLWLNSPHPNHPPFFFVAASFTGCGFFCVCFLKGTGFMTSYGITPSGFIKRRMSDIGAEIITTLQNAFGAEIATQPDTVLGQLVATFAEREAALWEMAEGVYNAMYPATASGSNLDKAVSFTGVTRLQATRSQVYCVLYGNAGTLVPAGTAAPQQAGLTRFLLAADTEISPDTLADVSIGVISAVAGQGYSLVLNSVSFSITAASANAPAILAQFVASVSSAGYNASVQGSGSSAVLRIVTDGRRTISVATSSLLIMTEMGTPGLFIARDYGPYTAPANSITTISNTISGFKRILNLQDAMPGRPYETDSALRARYARGVYRLGAGTLPSIRASLLQKVQGVTAAMVIENDTAAVDTDGRPPHSVECIVEGGEDAAVAAQIQAVKPAGITAYGLNSQTVQISTGAHNGTEWHSIGFTRPVRRYVWITCKITTLSEETFPADGLLRVQQSLNDTGVALDIAQDVVAQRFLGPIYETVSGIASIALSFAVTSDPATMPASTAYTQANISIGARERAIFDTARIYVS
Sequence
>complement(1739294..1740196)
GranulibacterbethesdensisMNLSERKIRIRFFSGKNNLYDVNDLRVIINIKRSITNSGNSMNLTIFNLNKRNIDFIINSVKMEIYAGYGSHLFLAFVGVPNLIKTAHKDADYTISITAFDGNDILSASRSSYTGYENVTVREIIETAAHDAGLGLKIVDGLGRRSWKHGYSFYGSSKNMLEDACKAEGLEYSVQNNVVQVTKKGQPFPKPEVLLSMETGLIRYVEVASKGPKASVFTKGINPTDNPYVKQIVSSDEPVEGLTVYSLMRPDLIPGDPVVIKHPGIVKKRYHVSTIEHDGNNMPVDNKELGTWTSTITLVE
Region 3, total 6 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(1741594..1742199) | PHAGE_Haemop_Aaphi23_NC_004827: putative baseplate protein; GbCGDNIH6_1564; phage(gi31544048) | 1.83e-17 | Showinfo_outline |
| 2 | complement(1742232..1742966) | Hypothetical protein; GbCGDNIH6_1565 | 0.0 | Showinfo_outline |
| 3 | complement(1743022..1743411) | PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; GbCGDNIH6_1566; phage(gi327198582) | 5.95e-18 | Showinfo_outline |
| 4 | complement(1743438..1744223) | Hypothetical protein; GbCGDNIH6_1567 | 0.0 | Showinfo_outline |
| 5 | complement(1744426..1744785) | PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; GbCGDNIH6_1568; phage(gi327198579) | 3.74e-07 | Showinfo_outline |
| 6 | complement(1744804..1745505) | PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; GbCGDNIH6_1569; phage(gi327198578) | 3.63e-11 | Showinfo_outline |
Sequence
>complement(1741594..1742199)
GranulibacterbethesdensisMIMAVDFKKIIKNLIASHCDRINTTMPGTIVSYNPATRRAVVQLSLSKTSPEGIVLKAPRVVSVPVVFPTGGGVAITWPLHPGDGVMLHFCQRSLENWLDHGDDVVDDFRQSNISDAIAVPGLNHGAATEPAHAENMVIAFGSASMEMTPSGGMVLNLPGGLTIKGKVTGDQDAVFNNISASTHTHAGVQPGSGRSGTPAA
Sequence
>complement(1742232..1742966)
GranulibacterbethesdensisMDASGCKARPRGSIRDFSEKAMTMKRQKLAGLVVVLCVAMMCGSALAFDRDEDLHVEWHMFCNRNGKCVERKRYCNIDHRCIYVPATKQEEAERLHQYALWKKRNLIQQKQYRQDLKVQEMIAENQTPELLEELRKKYSVLPGPYHECRSKECKNLYESFYDKLNKPRIGKDIIELSSNITVNDSGNWFICYSGQKIMNNGAAQKHDWIMSNAGWLLDSYVVGDGFYDEIYKQACQSDGEVIWQ
Sequence
>complement(1743022..1743411)
GranulibacterbethesdensisMKGFSMGYDIILADATRDVFLTNGDLILSDGLARVRQEIGITLRAWRGEWFLDLDFGIPYLQNVLVKEPQRVVLQSIFAAAIASVPDVEAVESLTATLDRPSRTLSIVFSARTRFGMVSDSIPFGIGGA
Sequence
>complement(1743438..1744223)
GranulibacterbethesdensisMLLFGLISARRTATDRGRNRQACSAATVSASSLFSPVSSGPFPMPKACPFCPASRLILLRFRDVARRGMALAMPVLMLSPAMAQPLDTAPHPASALANMGAVQRAELHARTHGALSTAEAPPIRVSQQPVQHVPDSESAAMRQEAEAALEARLGLGISISEGHATRFRDGKGGESQWYMCGSTTRLKGGMAGMSRSDSDRFVMASSGALLLESQQNADFGWPWAHVCSPENAMHPPSSPVPSPARTAVSPPVSAGGKGTER
Sequence
>complement(1744426..1744785)
GranulibacterbethesdensisMQLISVPDLNDSVMEAELDGQSFFLHLSWNSEAGFWTLGLQDATRTTLLEGLPVLGNTPLIGRYRTEAMPQGELIALPPDTALENGQERIGRSDLPGAGGASLVYVSAAEMGASLEGPD
Sequence
>complement(1744804..1745505)
GranulibacterbethesdensisMLNTLDLIFGASGQTYLEYQATPRHITLAPIDKGGGGAANTGQTRPAPVPATKGALHLDLLSMESYQLPSLATQYPVEQGMPISDGIIPQSARLTITGAVSSANATLFRPWNLGLRGISRLEDTVKLLEELHTAHLPVTVVTGLHVYPNMAMTGCEINRGITKDGESQSRTLKIKLDFLQIRIVQADVAVSGNAAAEVSGKTGSSAIPAGKAQSATPPPSLITRVATALGLTA
Region 4, total 12 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(1748649..1749095) | PHAGE_Pseudo_vB_PaeM_PAO1_Ab03_NC_026587: hypothetical protein; GbCGDNIH6_1573; phage(gi764159759) | 1.93e-15 | Showinfo_outline |
| 2 | complement(1749122..1750198) | PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; GbCGDNIH6_1574; phage(gi327198574) | 3.93e-54 | Showinfo_outline |
| 3 | complement(1750191..1750724) | PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; GbCGDNIH6_1575; phage(gi327198573) | 1.26e-09 | Showinfo_outline |
| 4 | complement(1750737..1751102) | Hypothetical protein; GbCGDNIH6_1576 | 0.0 | Showinfo_outline |
| 5 | complement(1751099..1751422) | Hypothetical protein; GbCGDNIH6_1577 | 0.0 | Showinfo_outline |
| 6 | complement(1751419..1751811) | putative secreted protein; GbCGDNIH6_1578 | 0.0 | Showinfo_outline |
| 7 | complement(1751815..1752765) | PHAGE_Rhizob_RHEph06_NC_027296: putative capsid protein; GbCGDNIH6_1579; phage(gi848469502) | 6.58e-84 | Showinfo_outline |
| 8 | complement(1752790..1753281) | PHAGE_Klebsi_JD001_NC_020204: hypothetical protein; GbCGDNIH6_1580; phage(gi448245125) | 3.25e-15 | Showinfo_outline |
| 9 | complement(1753242..1754219) | PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; GbCGDNIH6_1581; phage(gi327198566) | 4.13e-57 | Showinfo_outline |
| 10 | complement(1754247..1755488) | PHAGE_Erwini_phiEt88_NC_015295: portal protein; GbCGDNIH6_1582; phage(gi327198564) | 4.82e-35 | Showinfo_outline |
| 11 | complement(1755522..1756952) | PHAGE_Acinet_YMC11/11/R3177_NC_041866: hypothetical protein; GbCGDNIH6_1583; phage(gi100056) | 3.72e-67 | Showinfo_outline |
| 12 | complement(1756965..1757516) | PHAGE_Sinorh_phiLM21_NC_029046: terminase small subunit; GbCGDNIH6_1584; phage(gi981221072) | 3.13e-12 | Showinfo_outline |
Sequence
>complement(1748649..1749095)
GranulibacterbethesdensisMMIMAGNVYNYSPSNVYVVIGGVAISGFSSDKFITVDEQSAGFDSSVGADGEVMRSFSVDPRVKITLTLLQSSPSNEHLDALYTADRLSNGSIPVPILIEDLGGGLLFSAGTCWINGRAGHERSAKGSTRVWSITAVSPQLATAFRKS
Sequence
>complement(1749122..1750198)
GranulibacterbethesdensisMANLDRLVTVNILLQSASVNTQSFSDMLIVLKSTASLPRTGIITSASDLLSAPYGLTATHPAYLAAADAFSVTPHISQIYIGFWDGSSQNETLTAALSAMKTSDNSWYGLILPSRDKNTILEAAAWTEANGKLFGTAIAETDALDSTKTTDTLSLLKAANYFRTFCFYHAAAATDFPDAAVMSKMFTLYPGQESWANCTLPGVSADTLGEGQSSAVRGKNGNTFESFRNVTITQGGKTTGGEWIDVIRFRDWLQEEIKTSVFQLMVDNRIPYTDQGILMVKSKVQAALDLGVRRGGIAPPELDGNNNPIPSYTISVPLSANISANTKASRVLRDISFRARLAGAVHLVQINGTLSYTI
Sequence
>complement(1750191..1750724)
GranulibacterbethesdensisMLDDGTVHGFVQPMLDCALIWAEQNAPRPAFPYATLRWLRSEEGSRPIARPWYGAVNADGLMVVETPMQDTLEIQVFGPSALNTLDTLRQRLGFPTTQDNAFLHGIAVLSCGPVLNISALLETTWEERAAMELTLGHVMRGADAVGLIEKVQATGTLPGGGAPVPLSLNIEMETPHG
Sequence
>complement(1750737..1751102)
GranulibacterbethesdensisMKTSFRQSLTVLREGTGSYVAGRFVPASPVTQTISATVQPASVSDAEQIQPLPGGQAITALIRIYTDAVLGIGNASSQRGDCVLYTTAGDTAPRRYRIIARQSWDAGMRVDHHRYLASLEP
Sequence
>complement(1751099..1751422)
GranulibacterbethesdensisMMDTLGTALSRLEGMSLRIGPREHEGEREDNQTGDVAAAVEAEFGSGTMAARPYLRAFTDAQADRIADACAEAAALALGGGEPEEWLLDQISALVDGRFPVSMGDEA
Sequence
>complement(1751419..1751811)
GranulibacterbethesdensisMGDASAPYPAPVLLAILAPEFADVPAQAVTDALGVAAAHCPATLSPGRRQEAMALYAAWLLSLRASSLSGSGTAGAGQALRREKEGELEIEYLPRALTGAEAEAAGNYRARYEALLRPLSTGAVLTGEPG
Sequence
>complement(1751815..1752765)
GranulibacterbethesdensisMNSSLQHTRFDAQTGLSFLVSQAAALEAEIYRIQYADILYPSLIPVDTTAPEWIQVVEYVSADTVGRAQWFNGQAQDVPRADIVRDRLRVTVSMAAIGYGYDLAELEHARQYGIDLGPEKAEAARRAYEEFVDDIVLRGDAVRGFSGLLSHPAVTAGTVANGASGNPDWAHKTVDEIIDDVNAALTGIQTASLRVEMADTVLLPVDRWLKLSQTRIPATSETALSFLARTNIYTLTTGLPLTVRGIPGLESAGASGVGRMIVYRRAPDVMKLHIPMPLQFLAPWQSGPMRFEVPGIFRLGGVDIRKPGAIRYLDGV
Sequence
>complement(1752790..1753281)
GranulibacterbethesdensisMAFHAAFPCRRTLNMPPLQTSYAARHPDAYEGMQANAEPVTILTRIADTDIAFGKPVVQGVKDQSVRLPSATAARFLGIALAVHTVPALMGQAVDTYPAGSPLSVLNKGVIWVRVAAGVSAGAAAYLTPAGAITAASSNNTAIPNATFDTSAPAGGLARLRLS
Sequence
>complement(1753242..1754219)
GranulibacterbethesdensisMITERHDMVPLPRAHRDDDGFITDTPVLTRTGIFTYTDPMTGAQRREYRPPEEVFHADSLSSFRGRPITVGHPPPISGLITAANAAGAVVGTVMSEGRQDGENLVADIVIHDTAAVDEGLRDLSVGYRLDLDETPGEVDGEPYDAVQRGIRVNHVAIVPRGRAGNARLNLDRADTAPACTPDCPLHAALAVVTAERDAARADAARLEQEKIRQARQNLEQDAAGLGVRIHDDASDDELRIAVIRAVRGDALVLEGQSSAYLQAAFDLCVAEARMQAGAVQAQYSVAQRRDEAASRQKTPLSAYETYKATLSAAWRSTPPSHAGEH
Sequence
>complement(1754247..1755488)
GranulibacterbethesdensisMGTRLDDYLSGVLGAVQPGTLMMPGDTRAAGTVLSAYLQGGLAARIVDAPAEDALSRGITVLCDGDAAAEQAMAAEIARLHVPARMTEALRWARLFGGAAVMLFADDEVDPQRPLRLSSLSGIAELRVFDAEEITVDQLYDDPADARCGQPMAYRVTPRGGGTMFTVHETRLLPLPGAPLPHGMSNGLPWRGRSVLSGCLEEVQRYQDALRLSRGMLERKQQAVFGMAGLGELLRQAAMEAADPANSPLLESVRERVRRVDLARNVLNTVVIDAGDQWQVHDLNLSGVSDQIEAFEISIAACTGIPVTHLFGRSAAGQNATGEGDREVYIAVVQAMQRRVLVPPLERLVSLLWQQRGLRASIPESWKLVFPPQWIPSETEQADAALKNAQATLARVQAEVQAETLSGTASKTL
Sequence
>complement(1755522..1756952)
GranulibacterbethesdensisMSMQAVDTALRRELALRRRLRDLAARESLPEFARLVMAEQNLYPAAHHHLLLKELQAVAHGTVDRLLITMPPGSAKSTYASRIFPAWLMALQSGIRVIGASHTADLADHVSRGVQSCLRDYASILGTGLRRENARDWEAENGSAYKAVGIGGPIAGRRADVAIIDDPVKSRADADSRACRERVWNWFGADLRTRMKPGGRIVVIMTRWHEDDLGGRLLLRQGSSWRRVNLPAQAEDNDPLGRIPGEWLWGDDSYGYAGELQRVKAEYERGGAMRDWAALYQQQPRPAEGALFKTAALSCILAAPFSVQWVRAWDLAATRQTGTGDPDWTVGARLGRDAAGRFVIGDIVRLRGGPEDVTRIIAATASRDGVSVRISIPRDPGQAGKAQAAYLARMLGGYVVETSPESGDKSTRAMPFAAQVNAGNVDMLPGAWQAALLDELAGFPSARHDDQVDALSRAFLALTQGRDTRASFLAYL
Sequence
>complement(1756965..1757516)
GranulibacterbethesdensisMTRFSLTDRQQKFVVAYAALKGNAEQAYAVSYGPDLSPAQIAAGARRCLNSAAIRAALAHEAQQETEADKKKMMQPVTKENIVAALARLAFYDARDVLEWSEDGLRVKASSSLDDDTAFAIEEVVETPRGLRVKLADKRAALVELGRALGLFREAPSRDPAQAMSRAEIEAELDSLRAHQKKT
Granulibacter bethesdensis strain NIH6
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 2690741 bps
Phages: 4
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: GbCGDNIH6_0098 (Region 1)
Locus: GbCGDNIH6_0098ORF Start: 108747
ORF Stop: 109778
Strand: Backward
Protein Sequence: MKLYRLPGPHGIVPQGFDSLYTTEAPEPKPRRGQVLVRLRAASLNYRDLLVARGQYPLSPVPPDLIPLSDGAGEVIETGEDVTRFQPGDRVAPCFFQSWHDGPITERDGASALGGAIHGVLTEYAVFEQDGLVRIPDHLSWEEAACLPCAAVTAWHALFGSTPVQPGQTVLTQGTGGVSIFAIQFAKAAGARVITTSSSDKKLSRAQALGADEGINYRSRPDWHKAATALTGGLGVDHVVEVGGAGTLWQSIRAARLGGQIHLIGVLSGQNEINPMPLMARSQTLRGIYVGSRAMFEAMNIAISQHRIKPVIDRVFPFAEAVAAYRHLESATHLGKVVIRLDE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GbCGDNIH6_0098, putative zinc-containing alcohol dehydrogenase superfamily protein, phage(gi971760362), PHAGE_Prochl_P_TIM68_NC_028955
Homolog/Ortholog E-Value: 1.86e-06
Locus 2: GbCGDNIH6_0099 (Region 1)
Locus: GbCGDNIH6_0099ORF Start: 109867
ORF Stop: 110337
Strand: Forward
Protein Sequence: MATYVRSILQDDEYVLFVTRLHWVIYARAMVCIMAAPLLSGTLAGAVESQGMRTLALGGGLVLMALGLYAALKAWWRRYGTEIVVTDRRVIHKQGVLVRRTVDMNAVRIESVDVEQGLVGRWLGYGDVTLRGTGGGMETIRRVARPLDLRNAALAE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GbCGDNIH6_0099, membrane-flanked domain protein, phage(gi849120217), PHAGE_Erwini_phiEa2809_NC_027340
Homolog/Ortholog E-Value: 3.61e-12
Locus 3: GbCGDNIH6_0100 (Region 1)
Locus: GbCGDNIH6_0100ORF Start: 110334
ORF Stop: 111014
Strand: Forward
Protein Sequence: MTPRDLLRAGPDILYQDQHFVVLNKPAGLPAHAGPAGGPSVEDWFPLLSRRKEGPWLAHRLDTDTSGCLIIALRKTPLLEAQAMFAKGQAGKRYWAVVRGAPPAAEGRIDRKLSRRSESGEAGRGRWRMVEDAQGQSASTSWRVMEQQHGLSWLELSPLTGRTHQLRVHCALLGCPILGDPVYGDGKNAPLCLLACEIRLPLDPVMIVRAPVPAHMQRYGFSFPSP
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GbCGDNIH6_0100, Ribosomal large subunit pseudouridine synthase A
Homolog/Ortholog E-Value: N/A
Locus 4: GbCGDNIH6_7202 (Region 1)
Locus: GbCGDNIH6_7202ORF Start: 111116
ORF Stop: 111292
Strand: Forward
Protein Sequence: MSDVNFQNRSIPELKIPVRLLNHSLNSSHKFETVSTVRVQTMKKFKSSLAGDRQGCND
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_7202, Hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: GbCGDNIH6_0102 (Region 1)
Locus: GbCGDNIH6_0102ORF Start: 111330
ORF Stop: 112379
Strand: Forward
Protein Sequence: MRILVTGGCGFIGSAVIRHLIRDTAHSVVNVDKMTYAASEDALEEALTDPRHTLVKADICDAAAIAQVFATHRPDAVMHLAAESHVDRSIDGPAQFVQTNVVGTLVMLEAAREHWAKHRPEGGGRFHHISTDEVFGALENGDPPFTETTSYDPRSPYSASKAGSDHLVRAWQHTYAMPTFVSNTTNNYGPWQFPEKLIPLVTLNALEGKELPVYGDGSNQRDWLYVDDHAEALVRTLERGEPGGTYAIGARQPRSNLEVVRTICAVLDELVPDAGGKRERLIRFVTDRPGHDFRYEIDPSRAEAALDWKAPHDFEKGIRRTVQWYLDHRAWWEGIRSGRYAGQRLGTAS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GbCGDNIH6_0102, Phi92_gp067, phage(gi726647000), PHAGE_Entero_phi92_NC_023693
Homolog/Ortholog E-Value: 1.54e-113
Locus 6: GbCGDNIH6_0103 (Region 1)
Locus: GbCGDNIH6_0103ORF Start: 112383
ORF Stop: 113258
Strand: Forward
Protein Sequence: MKKGIILAGGSGTRLHPMTLAASKQLLPVYDKPMIYYPLSTLMLAGIRDILIISTPEDLPQFQRLLGTGERFGVKFNYAVQPKPEGLAQAFLIGRDWLEGQACALALGDNLIFADHLSVMLRAAASRPEGATVFAYRVRDPERYGVVSFDDAGRALEIVEKPAAPQSNWAVTGLYFYDEKVSEYAAAVKPSPRGELEITDINRMYLESHTLHVERLGRGCAWLDAGTCDSLLHAATFVQTIQDRQGLLVGCPEEVAFRMGFIDADQLKAQARLLAKTELGRLLAELVEGAQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GbCGDNIH6_0103, Phi92_gp066, phage(gi726646999), PHAGE_Entero_phi92_NC_023693
Homolog/Ortholog E-Value: 1.80e-112
Locus 7: GbCGDNIH6_0104 (Region 1)
Locus: GbCGDNIH6_0104ORF Start: 113312
ORF Stop: 113878
Strand: Forward
Protein Sequence: MKFERLAIPEVILVTPDRFGDNRGFFSETYQHRKYAEGGIAGTFVQDNHSLSAQRGTIRGLHCQVAPNVQGKLVRCVRGAIWDVAVDARTGSPTYGQWVAAELSAENWQQLWVPGGFLHAFCTLQPDTEVIYKVTGDYDKSAERGVIWNDAELNLPWPVAPEEVVTSEKDLQLPPFSAAKGWFTYGEQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GbCGDNIH6_0104, Phi92_gp065, phage(gi726646998), PHAGE_Entero_phi92_NC_023693
Homolog/Ortholog E-Value: 3.06e-43
Locus 8: GbCGDNIH6_0105 (Region 1)
Locus: GbCGDNIH6_0105ORF Start: 113875
ORF Stop: 114780
Strand: Forward
Protein Sequence: MSMSGPILVTGGSGQVALALEEAAKARDVSVRRVGRPEFDFDRPDSIETVFREVSPSLVVNAAAYTTVDAAESDVAAAERANRDGPARLAELCAVAGIPLIHISTDYVFDGSKGAPYVETDPTNPTGVYGRTKLAGEDAVLATCRQAIVLRTAWVVSHTGKNFVKTMLNAARKTDTLRVVADQQGNPTSAADLAEAILDIAKKLEKGWNDTYFGPTHAAGTGATTWHGLAEAVFEQAAKHGAPRPAVHPIKTSDWPTPARRPADSRLDCTRLETVFGVRMPDWQGSIALIVDQLSTEGAPG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GbCGDNIH6_0105, Phi92_gp064, phage(gi726646997), PHAGE_Entero_phi92_NC_023693
Homolog/Ortholog E-Value: 1.52e-35
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Click on a sequence to see details.
Locus 1: GbCGDNIH6_1552 (Region 2)
Locus: GbCGDNIH6_1552ORF Start: 1731525
ORF Stop: 1733222
Strand: Backward
Protein Sequence: MNSLVLIFLTSTLTGKSMSFFDRFSSLWASQGTASPPSDTQSDQGFSYLGQIPPSVELFNGLFQERDWKIKWLYQQISSVIGLDGSTPSETETGKAGGVLAKWFAPIKNPAFQGGATIYGPLEIGSQSVRSTPYIDFHTDGTNTDYNARIIAVGGTQGQSASAGLIISSATLEVGGDMTADKSLLVTGGITANGGITANGGASFKKTMYVGGGSTNASSLYVDDNSGAATWAGYFSGSAYVSKKFQVDGGATINGGDLSVSNNMKANGAVTGQTVYALNGGFSTSGGLYVATSASVGTLSVTKGSGNNSSLYASDNSGAATWAGYFSGSLYCSSKIETANRVYAHNYVCTGPTDGNFTPANNGANGCSMTPTGFNAYSASGPAAAFGTNGSNNQIIAFSAGTSGGVQWIGSIGSNGSSVQYNTTSDYRLKTSITDLDQSAAAEKILNIHIKNFAFISHPDRIVTGVIAHELQAVIPEAVTGEHDGTRHVDNVVIRDGTVAWENVTETTYQAAKEQNPDLWNGTEWHASCEVPDYQQVDYSKLVPMLTAALQNALTRIATLEAKVK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GbCGDNIH6_1552, virion structural protein, phage(gi422936245), PHAGE_Cyanop_S_TIM5_NC_019516
Homolog/Ortholog E-Value: 4.81e-22
Locus 2: GbCGDNIH6_1553 (Region 2)
Locus: GbCGDNIH6_1553ORF Start: 1733219
ORF Stop: 1734592
Strand: Backward
Protein Sequence: MHAGFCASAVSDCSGHCHMIAQNELNTAFGTKRESAASYITADGKLVITGPNVLRPSYADDGSYLGALTEGASTNYLPDSMLTTSQKSWSGNYASIVTSRLMKDGFSCLQFDFPALNSAASAQMSLGDPVSAQAGETWWLSAWGLMIGNSASVPVVSLRLSSGSANVTQAFPSGNASGRLVRIRVSLQVPAGQNTVSASLVVNGAAGGNAVSMVFSASQLEKNRVSSFIPTSNGFASRVSDRVFYIADADPGNGQVPDATNMVFGRDHGVVAWEHMLAQFSASSSLQSLVKALYPACTTLDTALQAMMNNRVLDQASGDQLDGIGDILGQSRLVGPASAIMLTDDQYRRLLKLKILLNNAHGTTEDLRAAFCVLFNADSTLLQDNGDASLTAVVGRFITASDLAFARSIAGFPKPAGVGLVQMQYDPARPFGFQQQSYMGFGSGCMARALDNIIPSS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1553, hypothetical protein, phage(gi100088), PHAGE_Pseudo_vB_PaeM_C2_10_Ab02_NC_042113
Homolog/Ortholog E-Value: 1.00e-10
Locus 3: GbCGDNIH6_5067 (Region 2)
Locus: GbCGDNIH6_5067ORF Start: 1734587
ORF Stop: 1734724
Strand: Forward
Protein Sequence: MHDTYRITTSADQEKRVEKTSAFSKRPKETSLLDRVRRNVFMHRL
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_5067, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 4: GbCGDNIH6_1554 (Region 2)
Locus: GbCGDNIH6_1554ORF Start: 1734804
ORF Stop: 1735406
Strand: Backward
Protein Sequence: MSEDIKQILKNLIASHCDRINTTMPGTIVSYDPATRRAEVQLSLSKTSPDAEIIKAPRVVDVPVVFPSVGPVGITWPLHSGDGVMLHFCQRSLENWKDAGSDIVDNFRQTHITDAIAVPGLAHSQATSPAHPDNMVIAFGSASVEFTSSGSLILNAPGGLTINGAVSGDQDAVFNGISVKTHAHSGVQPGSGRSGPPSAS
Homolog/Ortholog Species: Plate protein
Homolog/Ortholog Protein: GbCGDNIH6_1554, phage baseplate assembly protein V, phage(gi327198581), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 6.18e-18
Locus 5: GbCGDNIH6_1555 (Region 2)
Locus: GbCGDNIH6_1555ORF Start: 1735428
ORF Stop: 1736480
Strand: Backward
Protein Sequence: MPIRWRSGKMKYLNNRKYKVIFDGSDIIKKYTKIKAKINIKRMYNNSGNSIKVDLYNINRDYLDSIIRSKYLEVYCGYESGLFSLAFSGSPYAIKTGQRNADSIVTVVGFDGSDVLSRSLISFTGEKGIPVRDIIEAAATNAKMPLYMADGIGARRLKSGFSFYGSAKDMLESICHSSGLQYSVQNQTIQVTRKGETTTRPSVLLSMETGLIRYIDRTFMGPRSSAIIKDLNTADNPYLKELVSSIGTEEGVQVYSLMRPDINPGDPVWLKQGKGYEKFRVDTIEHNGDTMPVENSELGTWTSTINLISLKKFTFKLDKETKDDLPSLTKAIPAEKKRQAETDPFGFKFY
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1555, hypothetical protein, phage(gi327198580), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 1.06e-12
Locus 6: GbCGDNIH6_1560 (Region 2)
Locus: GbCGDNIH6_1560ORF Start: 1736450
ORF Stop: 1736983
Strand: Backward
Protein Sequence: MEYQTMKYKTLVIAGLLLGNVLSCGSAVADYWDPKLVAKLSKALQEEMERRRKHDEAIESKLTPEILEKLRQKYDVPPGPYHLYRGEEEERLTQPFWEELQRRNPNLTWLQSHMTVNEQGDWFVCIASEEILKNHIHRPDVSIKSSRGWTLYNDEFGGKFLMQIDHKACLSDGEVVK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1560, Hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 7: (Region 2)
Locus: ORF Start: 1737115
ORF Stop: 1737690
Strand: Backward
Protein Sequence: MQTLHPPWNKRRGSGGTMRALYLKIAGAALLLGNILSCGSAVADYWEPGVMAKLSQALEEEKERRRKHNEAIESKLTPEILEKLRQKYDVPPGPYHHFRGEEKESLTQPFWEELQRRNPNLSLLYTHMTVNEQGDWFVCILTEEILKNHIHRPEISIKSSRGWTLYDNEFGEKFLMEIRHKACETDGEIVK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: , Hypothetical protein, GbCGDNIH6_1560a
Homolog/Ortholog E-Value: N/A
Locus 8: GbCGDNIH6_1561 (Region 2)
Locus: GbCGDNIH6_1561ORF Start: 1737736
ORF Stop: 1739331
Strand: Backward
Protein Sequence: MEHGHQQSLWLNSPHPNHPPFFFVAASFTGCGFFCVCFLKGTGFMTSYGITPSGFIKRRMSDIGAEIITTLQNAFGAEIATQPDTVLGQLVATFAEREAALWEMAEGVYNAMYPATASGSNLDKAVSFTGVTRLQATRSQVYCVLYGNAGTLVPAGTAAPQQAGLTRFLLAADTEISPDTLADVSIGVISAVAGQGYSLVLNSVSFSITAASANAPAILAQFVASVSSAGYNASVQGSGSSAVLRIVTDGRRTISVATSSLLIMTEMGTPGLFIARDYGPYTAPANSITTISNTISGFKRILNLQDAMPGRPYETDSALRARYARGVYRLGAGTLPSIRASLLQKVQGVTAAMVIENDTAAVDTDGRPPHSVECIVEGGEDAAVAAQIQAVKPAGITAYGLNSQTVQISTGAHNGTEWHSIGFTRPVRRYVWITCKITTLSEETFPADGLLRVQQSLNDTGVALDIAQDVVAQRFLGPIYETVSGIASIALSFAVTSDPATMPASTAYTQANISIGARERAIFDTARIYVS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GbCGDNIH6_1561, co-chaperonin for GroEL, phage(gi100075), PHAGE_Shigel_Sf14_NC_042075
Homolog/Ortholog E-Value: 2.88e-51
Locus 9: GbCGDNIH6_1562 (Region 2)
Locus: GbCGDNIH6_1562ORF Start: 1739294
ORF Stop: 1740196
Strand: Backward
Protein Sequence: MNLSERKIRIRFFSGKNNLYDVNDLRVIINIKRSITNSGNSMNLTIFNLNKRNIDFIINSVKMEIYAGYGSHLFLAFVGVPNLIKTAHKDADYTISITAFDGNDILSASRSSYTGYENVTVREIIETAAHDAGLGLKIVDGLGRRSWKHGYSFYGSSKNMLEDACKAEGLEYSVQNNVVQVTKKGQPFPKPEVLLSMETGLIRYVEVASKGPKASVFTKGINPTDNPYVKQIVSSDEPVEGLTVYSLMRPDLIPGDPVVIKHPGIVKKRYHVSTIEHDGNNMPVDNKELGTWTSTITLVE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1562, hypothetical protein, phage(gi327198580), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 9.71e-13
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Click on a sequence to see details.
Locus 1: GbCGDNIH6_1564 (Region 3)
Locus: GbCGDNIH6_1564ORF Start: 1741594
ORF Stop: 1742199
Strand: Backward
Protein Sequence: MIMAVDFKKIIKNLIASHCDRINTTMPGTIVSYNPATRRAVVQLSLSKTSPEGIVLKAPRVVSVPVVFPTGGGVAITWPLHPGDGVMLHFCQRSLENWLDHGDDVVDDFRQSNISDAIAVPGLNHGAATEPAHAENMVIAFGSASMEMTPSGGMVLNLPGGLTIKGKVTGDQDAVFNNISASTHTHAGVQPGSGRSGTPAA
Homolog/Ortholog Species: Plate protein
Homolog/Ortholog Protein: GbCGDNIH6_1564, putative baseplate protein, phage(gi31544048), PHAGE_Haemop_Aaphi23_NC_004827
Homolog/Ortholog E-Value: 1.83e-17
Locus 2: GbCGDNIH6_1565 (Region 3)
Locus: GbCGDNIH6_1565ORF Start: 1742232
ORF Stop: 1742966
Strand: Backward
Protein Sequence: MDASGCKARPRGSIRDFSEKAMTMKRQKLAGLVVVLCVAMMCGSALAFDRDEDLHVEWHMFCNRNGKCVERKRYCNIDHRCIYVPATKQEEAERLHQYALWKKRNLIQQKQYRQDLKVQEMIAENQTPELLEELRKKYSVLPGPYHECRSKECKNLYESFYDKLNKPRIGKDIIELSSNITVNDSGNWFICYSGQKIMNNGAAQKHDWIMSNAGWLLDSYVVGDGFYDEIYKQACQSDGEVIWQ
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1565, Hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 3: GbCGDNIH6_1566 (Region 3)
Locus: GbCGDNIH6_1566ORF Start: 1743022
ORF Stop: 1743411
Strand: Backward
Protein Sequence: MKGFSMGYDIILADATRDVFLTNGDLILSDGLARVRQEIGITLRAWRGEWFLDLDFGIPYLQNVLVKEPQRVVLQSIFAAAIASVPDVEAVESLTATLDRPSRTLSIVFSARTRFGMVSDSIPFGIGGA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1566, hypothetical protein, phage(gi327198582), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 5.95e-18
Locus 4: GbCGDNIH6_1567 (Region 3)
Locus: GbCGDNIH6_1567ORF Start: 1743438
ORF Stop: 1744223
Strand: Backward
Protein Sequence: MLLFGLISARRTATDRGRNRQACSAATVSASSLFSPVSSGPFPMPKACPFCPASRLILLRFRDVARRGMALAMPVLMLSPAMAQPLDTAPHPASALANMGAVQRAELHARTHGALSTAEAPPIRVSQQPVQHVPDSESAAMRQEAEAALEARLGLGISISEGHATRFRDGKGGESQWYMCGSTTRLKGGMAGMSRSDSDRFVMASSGALLLESQQNADFGWPWAHVCSPENAMHPPSSPVPSPARTAVSPPVSAGGKGTER
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1567, Hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: GbCGDNIH6_1568 (Region 3)
Locus: GbCGDNIH6_1568ORF Start: 1744426
ORF Stop: 1744785
Strand: Backward
Protein Sequence: MQLISVPDLNDSVMEAELDGQSFFLHLSWNSEAGFWTLGLQDATRTTLLEGLPVLGNTPLIGRYRTEAMPQGELIALPPDTALENGQERIGRSDLPGAGGASLVYVSAAEMGASLEGPD
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1568, hypothetical protein, phage(gi327198579), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 3.74e-07
Locus 6: GbCGDNIH6_1569 (Region 3)
Locus: GbCGDNIH6_1569ORF Start: 1744804
ORF Stop: 1745505
Strand: Backward
Protein Sequence: MLNTLDLIFGASGQTYLEYQATPRHITLAPIDKGGGGAANTGQTRPAPVPATKGALHLDLLSMESYQLPSLATQYPVEQGMPISDGIIPQSARLTITGAVSSANATLFRPWNLGLRGISRLEDTVKLLEELHTAHLPVTVVTGLHVYPNMAMTGCEINRGITKDGESQSRTLKIKLDFLQIRIVQADVAVSGNAAAEVSGKTGSSAIPAGKAQSATPPPSLITRVATALGLTA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1569, hypothetical protein, phage(gi327198578), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 3.63e-11
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Locus 1: GbCGDNIH6_1573 (Region 4)
Locus: GbCGDNIH6_1573ORF Start: 1748649
ORF Stop: 1749095
Strand: Backward
Protein Sequence: MMIMAGNVYNYSPSNVYVVIGGVAISGFSSDKFITVDEQSAGFDSSVGADGEVMRSFSVDPRVKITLTLLQSSPSNEHLDALYTADRLSNGSIPVPILIEDLGGGLLFSAGTCWINGRAGHERSAKGSTRVWSITAVSPQLATAFRKS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1573, hypothetical protein, phage(gi764159759), PHAGE_Pseudo_vB_PaeM_PAO1_Ab03_NC_026587
Homolog/Ortholog E-Value: 1.93e-15
Locus 2: GbCGDNIH6_1574 (Region 4)
Locus: GbCGDNIH6_1574ORF Start: 1749122
ORF Stop: 1750198
Strand: Backward
Protein Sequence: MANLDRLVTVNILLQSASVNTQSFSDMLIVLKSTASLPRTGIITSASDLLSAPYGLTATHPAYLAAADAFSVTPHISQIYIGFWDGSSQNETLTAALSAMKTSDNSWYGLILPSRDKNTILEAAAWTEANGKLFGTAIAETDALDSTKTTDTLSLLKAANYFRTFCFYHAAAATDFPDAAVMSKMFTLYPGQESWANCTLPGVSADTLGEGQSSAVRGKNGNTFESFRNVTITQGGKTTGGEWIDVIRFRDWLQEEIKTSVFQLMVDNRIPYTDQGILMVKSKVQAALDLGVRRGGIAPPELDGNNNPIPSYTISVPLSANISANTKASRVLRDISFRARLAGAVHLVQINGTLSYTI
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1574, hypothetical protein, phage(gi327198574), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 3.93e-54
Locus 3: GbCGDNIH6_1575 (Region 4)
Locus: GbCGDNIH6_1575ORF Start: 1750191
ORF Stop: 1750724
Strand: Backward
Protein Sequence: MLDDGTVHGFVQPMLDCALIWAEQNAPRPAFPYATLRWLRSEEGSRPIARPWYGAVNADGLMVVETPMQDTLEIQVFGPSALNTLDTLRQRLGFPTTQDNAFLHGIAVLSCGPVLNISALLETTWEERAAMELTLGHVMRGADAVGLIEKVQATGTLPGGGAPVPLSLNIEMETPHG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1575, hypothetical protein, phage(gi327198573), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 1.26e-09
Locus 4: GbCGDNIH6_1576 (Region 4)
Locus: GbCGDNIH6_1576ORF Start: 1750737
ORF Stop: 1751102
Strand: Backward
Protein Sequence: MKTSFRQSLTVLREGTGSYVAGRFVPASPVTQTISATVQPASVSDAEQIQPLPGGQAITALIRIYTDAVLGIGNASSQRGDCVLYTTAGDTAPRRYRIIARQSWDAGMRVDHHRYLASLEP
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1576, Hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: GbCGDNIH6_1577 (Region 4)
Locus: GbCGDNIH6_1577ORF Start: 1751099
ORF Stop: 1751422
Strand: Backward
Protein Sequence: MMDTLGTALSRLEGMSLRIGPREHEGEREDNQTGDVAAAVEAEFGSGTMAARPYLRAFTDAQADRIADACAEAAALALGGGEPEEWLLDQISALVDGRFPVSMGDEA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1577, Hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 6: GbCGDNIH6_1578 (Region 4)
Locus: GbCGDNIH6_1578ORF Start: 1751419
ORF Stop: 1751811
Strand: Backward
Protein Sequence: MGDASAPYPAPVLLAILAPEFADVPAQAVTDALGVAAAHCPATLSPGRRQEAMALYAAWLLSLRASSLSGSGTAGAGQALRREKEGELEIEYLPRALTGAEAEAAGNYRARYEALLRPLSTGAVLTGEPG
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GbCGDNIH6_1578, putative secreted protein
Homolog/Ortholog E-Value: N/A
Locus 7: GbCGDNIH6_1579 (Region 4)
Locus: GbCGDNIH6_1579ORF Start: 1751815
ORF Stop: 1752765
Strand: Backward
Protein Sequence: MNSSLQHTRFDAQTGLSFLVSQAAALEAEIYRIQYADILYPSLIPVDTTAPEWIQVVEYVSADTVGRAQWFNGQAQDVPRADIVRDRLRVTVSMAAIGYGYDLAELEHARQYGIDLGPEKAEAARRAYEEFVDDIVLRGDAVRGFSGLLSHPAVTAGTVANGASGNPDWAHKTVDEIIDDVNAALTGIQTASLRVEMADTVLLPVDRWLKLSQTRIPATSETALSFLARTNIYTLTTGLPLTVRGIPGLESAGASGVGRMIVYRRAPDVMKLHIPMPLQFLAPWQSGPMRFEVPGIFRLGGVDIRKPGAIRYLDGV
Homolog/Ortholog Species: Head protein
Homolog/Ortholog Protein: GbCGDNIH6_1579, putative capsid protein, phage(gi848469502), PHAGE_Rhizob_RHEph06_NC_027296
Homolog/Ortholog E-Value: 6.58e-84
Locus 8: GbCGDNIH6_1580 (Region 4)
Locus: GbCGDNIH6_1580ORF Start: 1752790
ORF Stop: 1753281
Strand: Backward
Protein Sequence: MAFHAAFPCRRTLNMPPLQTSYAARHPDAYEGMQANAEPVTILTRIADTDIAFGKPVVQGVKDQSVRLPSATAARFLGIALAVHTVPALMGQAVDTYPAGSPLSVLNKGVIWVRVAAGVSAGAAAYLTPAGAITAASSNNTAIPNATFDTSAPAGGLARLRLS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1580, hypothetical protein, phage(gi448245125), PHAGE_Klebsi_JD001_NC_020204
Homolog/Ortholog E-Value: 3.25e-15
Locus 9: GbCGDNIH6_1581 (Region 4)
Locus: GbCGDNIH6_1581ORF Start: 1753242
ORF Stop: 1754219
Strand: Backward
Protein Sequence: MITERHDMVPLPRAHRDDDGFITDTPVLTRTGIFTYTDPMTGAQRREYRPPEEVFHADSLSSFRGRPITVGHPPPISGLITAANAAGAVVGTVMSEGRQDGENLVADIVIHDTAAVDEGLRDLSVGYRLDLDETPGEVDGEPYDAVQRGIRVNHVAIVPRGRAGNARLNLDRADTAPACTPDCPLHAALAVVTAERDAARADAARLEQEKIRQARQNLEQDAAGLGVRIHDDASDDELRIAVIRAVRGDALVLEGQSSAYLQAAFDLCVAEARMQAGAVQAQYSVAQRRDEAASRQKTPLSAYETYKATLSAAWRSTPPSHAGEH
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1581, hypothetical protein, phage(gi327198566), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 4.13e-57
Locus 10: GbCGDNIH6_1582 (Region 4)
Locus: GbCGDNIH6_1582ORF Start: 1754247
ORF Stop: 1755488
Strand: Backward
Protein Sequence: MGTRLDDYLSGVLGAVQPGTLMMPGDTRAAGTVLSAYLQGGLAARIVDAPAEDALSRGITVLCDGDAAAEQAMAAEIARLHVPARMTEALRWARLFGGAAVMLFADDEVDPQRPLRLSSLSGIAELRVFDAEEITVDQLYDDPADARCGQPMAYRVTPRGGGTMFTVHETRLLPLPGAPLPHGMSNGLPWRGRSVLSGCLEEVQRYQDALRLSRGMLERKQQAVFGMAGLGELLRQAAMEAADPANSPLLESVRERVRRVDLARNVLNTVVIDAGDQWQVHDLNLSGVSDQIEAFEISIAACTGIPVTHLFGRSAAGQNATGEGDREVYIAVVQAMQRRVLVPPLERLVSLLWQQRGLRASIPESWKLVFPPQWIPSETEQADAALKNAQATLARVQAEVQAETLSGTASKTL
Homolog/Ortholog Species: Portal protein
Homolog/Ortholog Protein: GbCGDNIH6_1582, portal protein, phage(gi327198564), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 4.82e-35
Locus 11: GbCGDNIH6_1583 (Region 4)
Locus: GbCGDNIH6_1583ORF Start: 1755522
ORF Stop: 1756952
Strand: Backward
Protein Sequence: MSMQAVDTALRRELALRRRLRDLAARESLPEFARLVMAEQNLYPAAHHHLLLKELQAVAHGTVDRLLITMPPGSAKSTYASRIFPAWLMALQSGIRVIGASHTADLADHVSRGVQSCLRDYASILGTGLRRENARDWEAENGSAYKAVGIGGPIAGRRADVAIIDDPVKSRADADSRACRERVWNWFGADLRTRMKPGGRIVVIMTRWHEDDLGGRLLLRQGSSWRRVNLPAQAEDNDPLGRIPGEWLWGDDSYGYAGELQRVKAEYERGGAMRDWAALYQQQPRPAEGALFKTAALSCILAAPFSVQWVRAWDLAATRQTGTGDPDWTVGARLGRDAAGRFVIGDIVRLRGGPEDVTRIIAATASRDGVSVRISIPRDPGQAGKAQAAYLARMLGGYVVETSPESGDKSTRAMPFAAQVNAGNVDMLPGAWQAALLDELAGFPSARHDDQVDALSRAFLALTQGRDTRASFLAYL
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH6_1583, hypothetical protein, phage(gi100056), PHAGE_Acinet_YMC11/11/R3177_NC_041866
Homolog/Ortholog E-Value: 3.72e-67
Locus 12: GbCGDNIH6_1584 (Region 4)
Locus: GbCGDNIH6_1584ORF Start: 1756965
ORF Stop: 1757516
Strand: Backward
Protein Sequence: MTRFSLTDRQQKFVVAYAALKGNAEQAYAVSYGPDLSPAQIAAGARRCLNSAAIRAALAHEAQQETEADKKKMMQPVTKENIVAALARLAFYDARDVLEWSEDGLRVKASSSLDDDTAFAIEEVVETPRGLRVKLADKRAALVELGRALGLFREAPSRDPAQAMSRAEIEAELDSLRAHQKKT
Homolog/Ortholog Species: Terminase
Homolog/Ortholog Protein: GbCGDNIH6_1584, terminase small subunit, phage(gi981221072), PHAGE_Sinorh_phiLM21_NC_029046
Homolog/Ortholog E-Value: 3.13e-12
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download