Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1111300651 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1111300651.PHASTER.zip
gi|00000000|ref|CP018194.1| Granulibacter bethesdensis strain NIH8.1 chromosome, complete 2738877, gc%: 59.17%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 13.4Kb | incomplete | 40 | 18 | 1753470-1766948 info_outline | PHAGE_Erwini_phiEt88_NC_015295(5) | 50.40% | Show info_outline |
Region DNA
>1 1753470-1766948 TTAATACTCCAAAATGACGAGACCCGCTGCGCCGGGCGAGCCATATTGTTGGGAGTGAGC AGAGCCACCAGCACCACCACCTGGGTAAACGCCACTCGGACCCGCCACAGATTGCGTGCC TGCGTATGCTATCCGCTGTGTCCATCCACCCCAGAAAACGCCACCACCAGCAGAGCACAC CAGCAGGTAGGTCGATCCACTCTGCCCCATGAGAATAGCAATCCCGCTGGAATCTCCGGT TCTGCTCAGGCTGCCAGAGGGCGCTACCGGCACATCACCGCCAGCACCTCCACCGACCAT AATTCCTGACCCTGACCCGCCCTGTCCCCCTCCACCACCGTGGACATAGATGAAAGTAGT GCCATTTTTTGAGATTGCGCTGTCACCTCCGGTAACACCGTAATTGCCAGGTGCTCCACC GCTACCGCCCCCACCTACAACAATGGAAAGGCTGTCGCCCGGCACTACCGAGAAATAGCA TTCGACATAGCCACCGCCACCGCCGCCGCGTGCTGCATCATTGGTTTGGCCAGTACCACC GCTGCCTCCACCGCCGCCCCATACACGGGCCTTGATCCGCGTCACACCTGAAGGAACGGA CCAGGTCGTTGTGGCACCCAGGACCAATTCGCGAGTAAGGCCACCCGGCTGCTTGCCGTC AGTATATGTATTTGCTGATGATACAGCCGAAGATATAGCTGAAGATACACGCGATTGTAC AAAAGCTGTTGTGGCAGCTCGGTTACCATTATCCACGTTTGACTGAATCGTCGGGACGAA AACATCAGAGCAATAAAAGCTGATACCAGCACTTCCGATCTGTCCGGGCGACCCACCTAA AGCAATAATTCGGGCATTATAATCTGTGTTTGTTCCATCGGTATGAAAATCAATATATGC AACGGATGAAACTGACTGGGATCCCAACTCCAGAGAACCCAGCATAGTGGTTGTGCCAAG AATCGTTGGATTGCGAATGGGCAGAAACCAGTTTTTCAGCACCCCTCCAGCTTTGCCTGT TTCTGTCTCACTCGGCTGGCTGCCATCGAGGCCTATGACAGAGGAAATCTGCTGGTACAG CCACTTTATTTTCCAGTCTCTTTCCTGAAACATCCCGTTGAAGAGCTCCACACTGGGTGG AATTTGTCCCAGATAGGAAAAACCCTGATCTGACTGTGTATCGCTCGGCGGGGATACCGT TCCTTTTGAGGCCCACAGACTGCTGAAACGGTTAAAAAACGACATGTTTTTTCCTGTCAG TGTTCAGTTAAGCAAACCCTCTTGATCAGAGGAAAGAAAAGTCAGGCAATGATGTTATCG AGCGCGCGCGCCATGCAGCCCGATCCGAACCCCATGTAGCTCTGCTGCTGAAATCCGAAT GGTTTTGCCGGATCGTACTGCATCTGGATCAGACCAACACCAGCGGGTTTTGGAAAACCC TTTATGGAACGTGCGAAAGCAAGATCATCGGCACTGATAAACCGCCCCACCACTGCGGTC AGGCTGGCATCACCGTTATCCTGGATCAGTGTGCTGTCTGCATTGAACAAAGCACAGAAA GCGGCTCTCAGATCCTCGGTTGTGCCATGCGCATTGTTCAGCAGGATTTTCAGCTTCAAC AACCGCCGATACTGATCGTCCTCCAGCTTTGTCGCATTTGCCGGACCAACCATCCGTGAC TGGCCGAGAATATCACCAATGCCATCCAGTTGATCCCCGGTTGCCTGATCCAGCACGCGA TTATTCATCATCGCCTGCAAAGCCGTATCCAGCGTGGTGCAGGCCGGATAAAGCGCCTGC ACCAGAGACTGCAGATCAGAACTGGCCGCAAACTGGGCCAGCATATGCTCCCACGCCACG ACCCCGTGATCACGCCCGAAGACCATATTGGTGGCATCAGGCACCTGCCCGTTACCGGGG TCAGCATCGGGAATATAGAAAACGCGATCAGACACGCGGGAGGCAGGACCGGTGCTGGTT GGAATAAAGCTGGTAACACGCTTTTTTTCCAGTTGAGGGGCGGAGAACAGCATCGAAACA GCACTGCTTCCAGTTGCTCCGTTCGCAACCAGAGAGGCAGAAACAGCATTCTGTCCGGCC GGAACCTGCAGACTGATCCTGATCCTCACCAGCCTGCCTGAAGCAGTGCCGGAAGGAAAT GCCTGCATCACTTTTGCAGAACCTGATGCAAGGCACAGAGAGACAAGCGGTGCAGTCGCC GAGGAGCCAAGCATCAGCCCCCATGCACTGAGCCACCATGTCTCCCCCGCCTGTGCCGAA ACCGGATCACCTAAACTCATCTGAGCGGAGGCAGACGTGTTGAGCGCAGGAAAATCAGAT TGGAGGCAGGAAAAGCCATCTTTCATCAGGCCACTGATGGTGATGGCAGGAAAGTTGCCA GACCAGCTTTTTCCATCCGGTGTCAGCATTGAATCAGGCAGATAGTTGGTGGAGGCTCCC TCGGTCAACGCCCCCAGATAGCTGCCATCATCGGCATAGGATGGTCTCAGAACATTCGGC CCGACAATAACAAGTTTGCCATCGGCCGTGATATAACTGGCAGCGGTTTCCCGCTTGGTA CCGAACGCGGTATTCAACTCATTTGCAGCGATCATATGACAATGCCCGGAGCAGTCCGAA GCTGCGGACGCGCAAAAGCCGGCATGCATGACACATACCGGATCACAACATCCGCAGATC AGGAGAAAATGGTAGCAGACGCTTCAGCTTTCTCAAAAAGCCTGAAGCACGCATCCCCGC AGAATCGTTTGAGGAGGAATGCTTTTATATATCCAGTGTGGCAGACAATAAGAAATTATC TTCCCCTTGTCTACCGTTTTATTCAGCCTGTCGTACTTATCCGGCTGAAGGCGGGCCGGA GCGTCCGGAACCGGGCTGCACACCGGTATGGGCATGTGTCTTGACCGAAATACCGCCAAA GACCGCATCCTGATCACCGGATACCGCGCCTTTGATTGTAAAGCCACCCGGCGCATTCAG CACGATGCCACCGGAAGGGGTGAGTTCCAGAGAGGCAGAGCCGAACGCAATCACCATATT TTCGGCGTGGGCCGGAGCTGTGGCTTTACTGTGCGCGAGGCCCGGCACGGCAATGGCGTC CGTGATGTTGGTCTGGCGGAAATTATCGACAATATCACTGCCGGCATCTTTCCAGTTTTC CAGCGAACGCTGGCAGAAATGCAGCATGACACCATCACCGGGATGCAATGGCCAGGTGAT GCCGACAGTGCCGACAGAGGGAAACACGACAGGCACATCGACAATACGCGGGGCTTTTAT AATCTCCGCATCGGGCGAGGTTTTGGACAGGGAAAGCTGCACCACAGCGCGGCGTGTGGT GGTGTCATACGACACAATGGTGCCCGGCATCGTCGTATTGATACGATCACAATGTGAGGC AATCAGGTTTTTCAGAATCTGTTTGATGTTATCAGACATGGTGAGAATCCTTCATCGATA TCAGTAATATTTGTAGCCAAACTTGTTTATCTCTTCCTGACGCTTTTTCTCGGCCTGAAT GGCATTTTTCAGGGAAGACAAGCCATCCTGCGCTTCCTTGCCCACCGCTGCAGAAAAGAA TTCGAGGGAGACAAGGTTGATCGTCGATGTCCATGTTCCCACCTCAGCATTCTGATCCGG CATTGTATCGCCATTATGCTCGATAGTATCGACACGGAATTCCTTGTAAGCCTTAGCCTG CTGAAGCAATACTCGATCACCCGGGTTGAGATCAGGCCGCATCAGCGAATACACCTGCAC ACCTTCCACAGGCCCAACACCGGAGACCAGTTCCTTGAGGTACGGGTTATCCGCGGGATT CAAATCTCTTATGATAGCAGAACTCCGTGGCCCCTGGACGGTTTTTTCTATATAACGGAT CAGCCCTGTTTCCATGCTCAGAAGGACAGGAGGACGAGTGGTCGTCTCCCCATTTCTGGT CACCTGAATCGTTTTGTTCTGAACAGAATATTGCAAGCCGACAGAATGGCAGATGCCCTC GAGCATATCTTTTGCCGATCCGTAAAAGCTGAAGCCGCTTTTCAGACGTCTGTCGCCAAT GCCATCTGCCATGTTCAATGTCATTTTGGCGTTTCTGGCCGCTGCTTCAATGATGTCCCT GACCGCAATTCCTTTTTCCCCTGTAAAGCTTATCAGCGATCTGGATAAAAGGTCAGAGCC ATCGAAGCCTATAACGGTAACAATATAGTCGGCGTTTCTGTGGGAGCTTTTTATTGTGTA TGGGGAACCAGAGAAAGCCAGACTAAACGGTCCGGATTCATAACCACAATATACTTCCAT ATCTTGAGAATTTTCTATAATACGCAATGATTGTTGTGATAAATTATACAAATCTATTTT GATACTATTTCCTGAATTATTATACATTCTTTTGATATTTATTTTAGATTTTATGTTTGT GTATTTCACAACTCCTTGTTTAGACGTAAAAATAATTTCGTATTTTCTATTGTTTAGAGA AATCATTCTACCACTTCCCCATCTGAATGACATGTTTTATGAAATATTTCCTTCAAAAAT GTACCTGCAACCTCTTCGCCATACAATGTCCATCCTCGACTTGATTTGATAGCAAATTCT CTTCTTGGTATATCATTATTTAATATTTCTTCCGTTGTCATGCATACAAACCAATCTCCT TGTTCGTTAATAGTGACATGCGACTCTGACCAATAAATCTTTGGATTTCTTTTCTTAAGT TCATCCCAAAAAGACTGTGTAAAAAGATTTTCTTTTTCTCCACGATAAAGATGATATGGA CCGGGCGGCACGTCATATTTTTGGCGCAGTTTTCCCAGTATTTCCGGGGTCAGCTTGCTT TCTATAGCCTCGTTCTTTTTTTCCCGACGCTCTATTTCCTCCTGCAGGCCCTTCTGTAAT CTGTTCAGTAGCTTCGGGTCCCACACATCCGCAACAGCGATGCCACAGGATAAGCTGCTA CCTAAAAGAACCGCGGCAAAAACAAGGTTTTTGTATTTCATTGTCTGATACACTCCATTT TATTGCTCTCATCTCCTTTGCTATCATACAGAAAGCGCACCACACCATCCGGTGTAATGC GCTTTCTATATGATAATCGTGTCAATCGTTTTGTTCTGAACGGAATATTGCAAGCCGACA TGGTGGCAGATGCCTTCGAGCATATCTTTTGCCGATCCGTAAAAGCTGAAGCCGCTTTTC AGACGTCTGTCGCCAATGCCATCTGCCATGTTCAATGTCATTTTGGCGTTTCTGGCCGCT GCTTCAATGATGTCCCTGACCGCAATTCCTTTTTCCCCTGTAAAGCTTATCAGCGATCTG GATAAAAGGTCAGAGCCATCGAAGCCTATAACGGTAACAATATAGTCGGCGTTTCTGTGG GAGCTTTTTATTGTGTATGGGGAACCAGAGAAAGCCAGACTAAACGGTCCGGATTCATAA CCACAATAGACTTCCATATCTTTAGATTTTTCTATTATACCTAATGATTTTTCTGATATA TTATATAAATCTATTTTGATACTATTGCCTGAATTATTATACATTCTTTTGATATTTATT TTTGCTTTTATATTTTTATATTTTACCACTCTTTCGTCAGACGCAAAAATAAATTCATAT TTTCGATCTTGTAAAGAATTCATTCTACCACCTCCCCGTCCAAATCACATGCTTTATCAA ATATTTGCATCAAAAATTTACCTCCAAACTCTTCATCATACAAAGTCCATCCCTGACTTG ATTTGATAGAAAGTGCTCTTCTTGGTATATCATTATTTAATATTTCTTCCGTTGTCATGC ATACAAACCAATCTCCTTGTTCGTTAATAGTGACATGCGACTCTGACCAATAAATCTTTG GATTTCTTCTCTTAAGTTCATCCCAAAAAGACTGTGTAAAAAGATTTTCTTTTTCTCCAC GATAAAGATGATATGGACCGGGCGGCACATAATATTTTTGGCGCAGTTTTTCCAGTATTT CCGGGGTCAGCTTGCTTTCTATAGCCTCGTTCTTTTTTTCCCGACGCTCTATCTCCTCCG CCAGCCCCTTCTGTAATCTGTGCAGTAGCGCCGGGTCCCACACATCCGCAACAGCGATGC CACACGATAAGCTGCTACCTAAAAGAACCGCAGCAAAAACAAGATTTTTATATTTCATTG TCTGATATACTCCATTTTATTGCTCTCATCTCCTTTGCTATCATCAAGCGTCGAGGCCAG TGCTCCACACATGATCAACAATGTGCAGCACAGATATGAACGCCTCACCTCCACTCCCTT CCGCCTGTTGATCGTTCCACGGATGATGCAGAGTATGCATCATCCTGTGGCACAATTATG ATCCTCCGATCTCTGCTATTTCGAATCACGAAACATAGATACGTGTGGTATCGAAGATTG CACGCTCACGGGCGCCGATGGAGATATTGGCCTGCGTATAGGCTCCGCTGGCTGGCATTG TTGCAGGGTCGTTGCTGACGGCAAGGCTGAGCGTGAGGGATGCAATGCCGCTGACTGTTT CGTAAATCGGGCCAAGGAAACGCTGCACTATCACATCCTCGGCAATATCGAGCGTAGCCC CGGTATCATTCAGGGATTGCTGGATACGCAGCAGACCATCAGCGGGAAATGTTTCCTCGC TCAATGTCGTCACCTTGCAGGTGATCCAGATATAGCGCCGCACCGGCCTGGTGAAGCCTA TGTTGCACCATTCCGCGCCGTTGCGTACGCCGGTGCTGATCTGCACGATCTGGCTGTTGA GGCCGTATGCGGTGATACCGGCTGGCTTCACGGCCTGAATCTGCGCAGCGACGGCGGCGT CTTCTCCGCCCTCGACAATGCATTCAACGCTGTGCGGGGGGCGTCCGTCGGCATCGACGG AGGCTGTATCGTTTTCGATCACCATCGCCGTGGTGACACCTTGCACATTCTGAAGCAGGC TGGCCCGGATAGAGGGCAACGTCCCTGCCCCCAACCGATAGACGCCGCGCGCATAACGTG CCCGCAAGGCTGAATCGGTCTCATAAAGCCGGCCCGGCGTGGCATCCTGAAGATTAAGAA GACGTTTGAGGCCGGAGATCGTGTTGCTGATCGTGGTGATGGAGTTTGCAGGCGCGGTAT AAGGCCCGTAATCACGCGCAATAAACAGACCGGGGGTTCCCATCTCCGTCATGATCAACA GGGAGGATGTGGCAACGCTGATTGTCCTGCGTCCATCGGTAACCATACGCAGAACTGCGC TGCCGCCACTTCCCTGCACACTGGCATTGTATCCGGCAGCAGAGACAGCAGCCACGAGCT GCGCCAGAATGGCCGGGGCATTGGCCGAGGCTGCGGTGATGCTGAAACTGACAGAGTTCA GCACAATAGAGTAGCTTTGCCCCGCCACAGCGCTGCTGACGCCGATGGAGACATCGGCCA GAGTATCAGGGCTGATTTCCGTATCAGCGGCGAGCAGAAAACGCGTCAGCCCGGCCTGCT GAGGGGCTGCTGTTCCGGCGGGCACCAATGTACCTGCATCGCCGTACAACACGCAGTATA CCTGCGAGCGCGTGGCCTGAAGCCGGGTGACACCGGTGAAGGAAACGGCCTTGTCCAGAT TGCTGCCGCTGGCGGTGGCTGGATACATGGCGTTATAGACGCCCTCGGCCATTTCCCACA GCGCAGCCTCTCTCTCCGCAAAGGTGGCGACGATCTGACCGAGGACGGTATCAGGCTGGG TTGCGATCTCCGCCCCGAATGCATTTTGCAGGGTGGTGATGATCTCCGCCCCGATATCGC TCATGCGGCGCTTGATGAAACCGGACGGGGTGATGCCATAGCTGGTCATGAAACTTTTTC CTTTCAGGAAAACAGACACAAAAAAAGCCGCATCCGGTGACGGAGGCAGCTGCGAAGAAA GACGGTGGATGGTGGGGAGGAGAGCTATTCAACTAGAGTGATCGTTGATGTCCATGTTCC AAGTTCTGTTTCTTTTACCGGCATGCTGTCACCATTATGTTCAATCGTATCAATACGGTA TCGTTTAGTTCCGGTGTTGGGATTCTGGATCCTGACCATATCGCCTGGCATTAGATCCGG TCGCATTAATGAGTAAATTTTTAAGCCTTGCTCCGGAGCATCGGCCGAAACAATATTTTT TATATAAGGATTATTTGTTGGATTAATTCCCCTCGTAAAAACAGAAGCTCTGGGTGTTTT ATAAATCATGTCAATATAGCGGATTAAACCATTTTCCATTGTTAACAACGTATCCACAGT AGAAGAACTGTTGTTTTTTTTACTGATCTGAATAACCCCATTCTGAACAGAGTATTGAAG TCCTTCCGCCTTACAGGCATCATCAAGCATATCTTTGGATGAACCATAGAAACTATATCC ATGTTTCCAAGCACGCCGTCCAATATCTGGGGCCATTTTCAGATTTAAACGTGCATCTCG TGCAGCAGCCTCAATAATATCCCTCACATAAACCCCATTTTCCCCTGTATAACTAGATAG TGAGTGAGATAAAATATCATTTCCATCAAATGCTACAATAGAAGTTATATAATCAGCATT AATATGATAAGTCTTTAGAGAATCAACTCTCCCTAAAAAGGCAAGAAAAATTCTCTCTTC GTAACCTATATATAATTCCATCTTATTTGATTTTAAAATAAAATTTAAACTCAAATTATC AATGTTACAAATATTTAATTCTATATTATTTCCACTATTACTATATTTTCTCTTTATATT AAAAAATACTCTTAGTTTTTCAATAATTAATACATCATTATTTGTAGAATAAAATTTTAC TATTATTTTTCTTTCTGATAAATTCATTTTTTGTAAGTATTTCATTCTATAATCTCCCCA TCAGCACGGCAAGCTTGCAGCATAATTGGCATATAAATTTTATCTCCAACCTCATTTGAA TATAAAATCCATCCATTACTAGATTTTATTGCATTTATCCAATATTTTGCTCCGCTTTTT AGAATCTTTTCAATATTAATGCAAGAAAACCAGTCCCCACTATCATTAATGGTTGCATAA AATAGAACTGTATGGAAGTCTGGATATTTTCTCTGGATCTCCTCCCAAAAATCATTATTT ATTTTTTCTGCAATTTTTCCCCTAAAATTATGATATGGACCTGCAGGGACACTATATTCC CTTTTCATCCTTTCAATCATTTCCGGTGTCTGCTTATTTTCTATTTCCTGATTATGAAGC CTTTCTTTTTCTTTTTGGATAAAAAAATCACGTTCATATCTTTCTAAATCTTTCTGATCC GCGACATCCGCTAACGCGGGTATTGAGACACACGATGTAGAAAATACTAGCAACGCAGTG CATAGATGTTTAGCATTTACCATCATTGAAACTCCTTTTGATCTTTTGACCTACGATACC GATTATGCACCCTCTTATGGCAGGATTATGCTCCGGGATCGAGACGAACGAAGACACAAA AAAAGCCGCATCCGGTGACGGAGGCAGCTTACAAAAGCCCTGACAGAATCAGATAAAAAC TATGCAGAAGGTGGCCCGGATCGTCCGGAGCCAGGCTGAACACCGGTATGGGTATGGGTG CTGGTCGAAATGCTGTTAAACACCGCATCCTGATCACCCGTCACCTTTCCCTTGATGCTC AATCCACCGGGTGCATTCAGCACAATGCCGCCGGAGGGCGTAATTTCCATGGAGGCAGAG CCGAACGCAATCACCATATTCTCTGCATGCGCCGGATCTGTCGCAGCCCCGTGATTCAAA CCCGGCACCGCAATAGCGTCAGAGATGTTGCTTTGCCGGAAATCATCAACGACATCATCA CCGCGATCCAGCCAGTTTTCCAAAGATCGCTGACAGAAATGCAGCATGACTCCATCCCCC GGATGCAGCGGCCAGGTGATCGCAACGCCGCCCCCAGTCGGAAACACCACCGGCACAGAC ACCACGCGCGGTGCTTTCAGAACGATCCCCTCCGGCGAGGTTTTGGACAGGGAAAGCTGC ACCACCGCCCGTCGCGTTGCCGGATTATAGGAAACAATCGTCCCAGGCATTGTCGTGTTG ATCCGATCGCAATGCAATGCAATCATGTTTTTAAAAATTTGTTTGATATCTACAGTCATA ATCAAAACTCCTCACAACGATTTTTGATAGTTAACACTGACTATTCAGCAATTTCGCCAT TTGAATAACAGGCCTTTTTCTCTATCTCGTTGAAAAAGCTTCTTCCAACCTGAAAATTAT CAATCATCCATCCTTCGCTTGACATAATCCAATCGTGCCGCTGTTGGTAGCCATTCTTCA GGTTGAGCCAGGCAGAATAACAGACAAACCATTGCCCATTGTCATTGATACTGATGTGAC CAGATGGCTTCATAAGATCATTACCTTCAAAGCTGATAGCCAATTTATCCTCGAATTTTT TGAATAGTTTTTCTTTTTCTTTCCCTCTGTATTCATAATAGGGGCCAGGTGGAACGACGC ATTGTTTTCTTAACTCTTCAAGCTCTTCTGGTGTCCGATTTTTTTCAATCGTTTCCAAAT ATTTTTCATCACGCAGATATTGCCTATAATTGATTTCATTCTGGATCAGCCTTCGCTCTC TTTCTGATTTTGTTTCAGGGATCTCAGTACAACGCTTGGTGACATCGGTGTATTGGTTTT GATAAAAACATTCCCCGTATACTTCACAAAATCTGTGAATATCACCGGGTGTATCTTTAT CCATGTCGATGACGCGGCTGCTTCTCTCGACACAAATTTTTTCGGCCAAAGCAGGAAAAC AAGTCAGGCCCACGCATAGCATCACCGCCAGACCGGCAAGATTTTGATGTTTCATCGTCA TAACCTCTTCACTGAAATCCCGGATCGAGCCCCATGAACGCGTCCTGTCTCCCGACGCAT CCCTGGGAGAGAGAGGGGGGGGGAATAGCTTTACTCTCCCCCCCCACTCCCCCTTCTCAT GCCCCCCCGATGCCGAGCGGGATGATGTCCGACACCATCCCGAACCGGGTGCGGGCAGAG AACACGATGGACAGGGTTCGGCTCGGACGATCCAGAGTCGCGGTCAGGCTTTCGATCGCC TCCACATCCGGAACGGAGGTGATCGCCGCCGCAAAAATGGACTGCAAAACGACCCGCTGA GGCTCCTTGACCAGCACATTTTGCAGGTAAGGTATTCCGAAATCGAGGTCCAAAAACCAC TCTCCACGCCATGCCCGGAGGGTGATTCCGATCTCCTGACGTACTCTGGCCAACCCATCG GAGAGAATCAGGTCTCCATTGGTCAAAACAACGTCCCGAGTCGCATTCGACAGGAGGATA TCGTAGCCCATGCTAAATCCTTTCATATTTTACGTTAAAAGCCCTCCGCCTGCTCATTGC CCGGCTCTCTTTCCACCAGCAGAAACCGGGGGCAGAGCAGGAGGCGAAACAGCAGAAGGA GGGTTATGAGGTGCGTTTTCCGGGGAGCAGACATGCGCCCAGGTCCACCCAAAATCGGCG TGTCGATCGCTTTCCAGCAGCAATGCACCCGATGAAGCCGCCACGAATCGGCCCGAGTCG TGCCCTGCCGATTCGACCGCTCCATCCCCCGATCGGGTCACGGAACCGCATATATACCAT TGCGATTCGCCCCCCTTCCCTTCCCCGACTCGGGCTGCATGGGCATCAGAAATGCTGATT CCACGACCCAGTTTTGCTTCCAGCGCAGCCTCAGCAGAGCGTCTCATGCCCGCCGACTCG CTGTCCGGCACGTGCTGCACGGGTTGCTGACTCACGCGAATCGGCGGCGCGGCAGCCGCA CCAGGGGCTTCATGAGCGCGGGCATGCAGCTCCGCCCGTTGTACCGCGCCGATACTGGCC AAAGCAGGGGCAGGATGAGGGGCCACATCCCGCGTCTGGGCCATGGCAGGGGCCAGAATC AGCACCGACATGGCCAGTGCAATGCCGCATAGGGCGCTACAGCGGGCACCCTTCCGCTCC CTCCGCCGCTCCTGCCATTGGGCAACATCGCGGAAACGCAATGAAATCAGTCTGGAAGCA GGGCAGAAGGGGCGTGTTTTCGGCATGGGAACGGACCGCTCGATACAGGGACAGGCAGAG ATGAGGCGGAGGCCGGGGCGGAAAAGCGCCTCTCGGCTTCTGCCTCATCAACCGCTGTTC AACGGGCGGAAATAAGGCCGAACAAAAGCAAAACAGTGGCGTCACCACGCGGCTTTGTAC TGGATCAGCCAGCGCCGGAACCTCAGATCAGGGCCGAAACGCAGAAAGGGGGGAGGCAGC CTTACGGCTCCCTCCCCCCTTCTCTGTAGGCTGCATTGGTTGGTGCAGGCCCTTTCTAAT GTTTTCCGGCGGCGTTTGCCAAGCATTTATGGCGTTCCGTCATGCCGCCCCTTCCAGGGA GGCGGCCATTTCTGCGGCGGAGACATAAACCAGCGACGCCCCGCCCTCACCCGGCAGATC GGCCCGGCCGATGCGTTCCTGCCCGATTTCCAGCGCGGTATCAGGCGGAATAGCGACGAG TTCTCCTTGCGGCATGGCCTCGGTGCGGTAACGCCCGATCAGGGGCGTGTTGCCCAGCAC CGGCAGCCCCTCCAACAGAGTGGTGCGGGTGGCATCCTGAAGCCCGATGGTCCAGAATCC GGCCTCGCTGTTCCAGGACAGATGCAGGAAGAAGGTCTGGCCATCCAGCTCCGCCTCCAT CACGCTGTCATTCAGATCGGGCACGGAAATCAGTTGCATATCCGGTTTCCTTTACAGTCA GGCCGTCAGGCCAAGCGCGGTTGCAACCCGCGTGATCAGGCTTGGGGGTGGGGTGGCGGA TTGCGCCTTTCCTGAAGGAATGGCGGAGGATCCGGTCTTGCCGCTGACCTCGGCGGCGGT ATTGCCGCTGACCGCCACATCGGCCTGCACGATGCGTATCTGAAGAAAATCGAGCTTGAT CTTCAGGGTGCGGCTCTGGGATTCGCCATCTTTGGAGATACCGCGCGTGATATCGCAACC GGTCATGGCCATGTTCGGGTAGACATGCAGCCCGGTCACCACCGTGACGGGAAGATGGGC GGTGTGGATATTCTCCAGCAGTTTGACGGTATCCTCCAGCCGGGAAATGCCGCGCAGGCC GAGATTCCATGGCTGGAACAGCGTGGCATTGGCTGAGGACACCGCCCCCGTTATCGTCAG CCGCGCCGATTGCGGGATGATGCCGTCGGAAATCGGCATGCCCTGCTCCACCGGATATTG TGTGGCGAGGGAAGGCAGCTGGTAGGTCTCCATACTCAGCAGATCCAGATGCAGCGCCCC CTTTGTCGCCGGCACAATGCCGGGTCTGGCTTGTTCCACATTGGCAGCCTCTCCTCCGCC TTTATGCTCGGGCGAAGGCGTGATGCGCCTGGGAGTCGCCTGATATTCCAGATAGGTCTG GCCGGAGGCGCCAAAAATCAGATCCAGCGTGTTCAGCAT
Region Details
| Region | 1 |
| Region Length | 13.4Kb |
| Completeness(score) | incomplete(40) |
| Specific Keyword | tail,plate |
| Region Position | 1753470-1766948 |
| # tRNA | 0 |
| # Total Proteins | 18 |
| # Phage Hit Proteins | 11 |
| # Hypothetical Proteins | 7 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 7 |
| Most Common Phage Name(hit genes count) | PHAGE_Erwini_phiEt88_NC_015295(5) PHAGE_Pseudo_vB_PsyM_KIL4_NC_042054(3) PHAGE_Xantho_vB_XveM_DIBBI_NC_017981(3) PHAGE_Psychr_pOW20_A_NC_020841(2) PHAGE_Pseudo_vB_PsyM_KIL1_NC_030934(2) PHAGE_Haemop_Aaphi23_NC_004827(2) PHAGE_Aggreg_S1249_NC_013597(2) PHAGE_Pseudo_VCM_NC_029065(2) PHAGE_Citrob_Michonne_NC_028247(1) PHAGE_Shigel_Sf17_NC_042076(1) PHAGE_Klebsi_JD001_NC_020204(1) PHAGE_Shigel_Sf14_NC_042075(1) PHAGE_Citrob_Mordin_NC_041977(1) PHAGE_Pseudo_vB_PaeM_PAO1_Ab03_NC_026587(1) PHAGE_Klebsi_vB_KpnM_KpV79_NC_042041(1) PHAGE_Burkho_BcepIL02_NC_012743(1) PHAGE_Pseudo_JG004_NC_019450(1) PHAGE_Pseudo_phiMK_NC_031110(1) PHAGE_Entero_phi92_NC_023693(1) PHAGE_Pseudo_PAK_P2_NC_022967(1) PHAGE_Escher_phAPEC8_NC_020079(1) PHAGE_Klebsi_vB_KpnM_KpV52_NC_041900(1) PHAGE_Salmon_SEN34_NC_028699(1) PHAGE_Shigel_Sf13_NC_042017(1) |
| First Most Common Phage # | 5 |
| First Most Common Phage % | 27.77% |
| GC % | 50.40% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|CP018194.1| Granulibacter bethesdensis strain NIH8.1 chromosome, complete 2738877, gc%: 59.17%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 18 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(1753470..1754714) | PHAGE_Burkho_BcepIL02_NC_012743: putative tail fiber protein; GbCGDNIH8_8586; phage(gi238801675) | 8.63e-05 | Showinfo_outline |
| 2 | complement(1754771..1756138) | PHAGE_Pseudo_VCM_NC_029065: hypothetical protein; GbCGDNIH8_1553; phage(gi985769592) | 4.66e-11 | Showinfo_outline |
| 3 | complement(1756326..1756928) | PHAGE_Erwini_phiEt88_NC_015295: phage baseplate assembly protein V; GbCGDNIH8_1554; phage(gi327198581) | 4.46e-18 | Showinfo_outline |
| 4 | complement(1756950..1758002) | PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; GbCGDNIH8_1555; phage(gi327198580) | 5.50e-14 | Showinfo_outline |
| 5 | complement(1757972..1758502) | Hypothetical protein; GbCGDNIH8_1560 | 0.0 | Showinfo_outline |
| 6 | complement(1758575..1759132) | PHAGE_Psychr_pOW20_A_NC_020841: hypothetical protein; GbCGDNIH8_8587; phage(gi472339843) | 1.71e-08 | Showinfo_outline |
| 7 | complement(1759129..1759647) | Hypothetical protein; GbCGDNIH8_1560a | 0.0 | Showinfo_outline |
| 8 | 1759669..1759830 | Hypothetical protein; GbCGDNIH8_8588 | 0.0 | Showinfo_outline |
| 9 | complement(1759855..1761348) | PHAGE_Shigel_Sf17_NC_042076: co-chaperonin for GroEL; GbCGDNIH8_1561; phage(gi100075) | 1.33e-52 | Showinfo_outline |
| 10 | complement(1761414..1762334) | PHAGE_Haemop_Aaphi23_NC_004827: hypothetical protein; GbCGDNIH8_1562; phage(gi31544047) | 1.51e-12 | Showinfo_outline |
| 11 | complement(1762331..1762855) | Hypothetical protein; GbCGDNIH8_7135 | 0.0 | Showinfo_outline |
| 12 | complement(1763009..1763614) | PHAGE_Salmon_SEN34_NC_028699: baseplate assembly protein; GbCGDNIH8_1564; phage(gi966201439) | 9.40e-17 | Showinfo_outline |
| 13 | complement(1763650..1764330) | Hypothetical protein; GbCGDNIH8_1565 | 0.0 | Showinfo_outline |
| 14 | complement(1764446..1764835) | PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; GbCGDNIH8_1566; phage(gi327198582) | 5.32e-19 | Showinfo_outline |
| 15 | complement(1764863..1765555) | Hypothetical protein; GbCGDNIH8_1567 | 0.0 | Showinfo_outline |
| 16 | 1765431..1765664 | Hypothetical protein; GbCGDNIH8_8589 | 0.0 | Showinfo_outline |
| 17 | complement(1765869..1766228) | PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; GbCGDNIH8_1568; phage(gi327198579) | 1.50e-07 | Showinfo_outline |
| 18 | complement(1766247..1766948) | PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; GbCGDNIH8_1569; phage(gi327198578) | 1.82e-11 | Showinfo_outline |
Sequence
>complement(1753470..1754714)
GranulibacterbethesdensisMSFFNRFSSLWASKGTVSPPSDTQSDQGFSYLGQIPPSVELFNGMFQERDWKIKWLYQQISSVIGLDGSQPSETETGKAGGVLKNWFLPIRNPTILGTTTMLGSLELGSQSVSSVAYIDFHTDGTNTDYNARIIALGGSPGQIGSAGISFYCSDVFVPTIQSNVDNGNRAATTAFVQSRVSSAISSAVSSANTYTDGKQPGGLTRELVLGATTTWSVPSGVTRIKARVWGGGGGSGGTGQTNDAARGGGGGGYVECYFSVVPGDSLSIVVGGGGSGGAPGNYGVTGGDSAISKNGTTFIYVHGGGGGQGGSGSGIMVGGGAGGDVPVAPSGSLSRTGDSSGIAILMGQSGSTYLLVCSAGGGVFWGGWTQRIAYAGTQSVAGPSGVYPGGGAGGSAHSQQYGSPGAAGLVILEY
Sequence
>complement(1754771..1756138)
GranulibacterbethesdensisMHAGFCASAASDCSGHCHMIAANELNTAFGTKRETAASYITADGKLVIVGPNVLRPSYADDGSYLGALTEGASTNYLPDSMLTPDGKSWSGNFPAITISGLMKDGFSCLQSDFPALNTSASAQMSLGDPVSAQAGETWWLSAWGLMLGSSATAPLVSLCLASGSAKVMQAFPSGTASGRLVRIRISLQVPAGQNAVSASLVANGATGSSAVSMLFSAPQLEKKRVTSFIPTSTGPASRVSDRVFYIPDADPGNGQVPDATNMVFGRDHGVVAWEHMLAQFAASSDLQSLVQALYPACTTLDTALQAMMNNRVLDQATGDQLDGIGDILGQSRMVGPANATKLEDDQYRRLLKLKILLNNAHGTTEDLRAAFCALFNADSTLIQDNGDASLTAVVGRFISADDLAFARSIKGFPKPAGVGLIQMQYDPAKPFGFQQQSYMGFGSGCMARALDNIIA
Sequence
>complement(1756326..1756928)
GranulibacterbethesdensisMSDNIKQILKNLIASHCDRINTTMPGTIVSYDTTTRRAVVQLSLSKTSPDAEIIKAPRIVDVPVVFPSVGTVGITWPLHPGDGVMLHFCQRSLENWKDAGSDIVDNFRQTNITDAIAVPGLAHSKATAPAHAENMVIAFGSASLELTPSGGIVLNAPGGFTIKGAVSGDQDAVFGGISVKTHAHTGVQPGSGRSGPPSAG
Sequence
>complement(1756950..1758002)
GranulibacterbethesdensisMSFRWGSGRMISLNNRKYEIIFTSKQGVVKYTNIKSKINIKRMYNNSGNSIKIDLYNLSQQSLRIIENSQDMEVYCGYESGPFSLAFSGSPYTIKSSHRNADYIVTVIGFDGSDLLSRSLISFTGEKGIAVRDIIEAAARNAKMTLNMADGIGDRRLKSGFSFYGSAKDMLEGICHSVGLQYSVQNKTIQVTRNGETTTRPPVLLSMETGLIRYIEKTVQGPRSSAIIRDLNPADNPYLKELVSGVGPVEGVQVYSLMRPDLNPGDRVLLQQAKAYKEFRVDTIEHNGDTMPDQNAEVGTWTSTINLVSLEFFSAAVGKEAQDGLSSLKNAIQAEKKRQEEINKFGYKYY
Sequence
>complement(1757972..1758502)
GranulibacterbethesdensisMYQTMKYKNLVFAAVLLGSSLSCGIAVADVWDPKLLNRLQKGLQEEIERREKKNEAIESKLTPEILGKLRQKYDVPPGPYHLYRGEKENLFTQSFWDELKKRNPKIYWSESHVTINEQGDWFVCMTTEEILNNDIPRREFAIKSSRGWTLYGEEVAGTFLKEIFHKTCHSDGEVVE
Sequence
>complement(1758575..1759132)
GranulibacterbethesdensisMNSLQDRKYEFIFASDERVVKYKNIKAKINIKRMYNNSGNSIKIDLYNISEKSLGIIEKSKDMEVYCGYESGPFSLAFSGSPYTIKSSHRNADYIVTVIGFDGSDLLSRSLISFTGEKGIAVRDIIEAAARNAKMTLNMADGIGDRRLKSGFSFYGSAKDMLEGICHHVGLQYSVQNKTIDTIII
Sequence
>complement(1759129..1759647)
GranulibacterbethesdensisMKYKNLVFAAVLLGSSLSCGIAVADVWDPALLHRLQKGLAEEIERREKKNEAIESKLTPEILEKLRQKYYVPPGPYHLYRGEKENLFTQSFWDELKRRNPKIYWSESHVTINEQGDWFVCMTTEEILNNDIPRRALSIKSSQGWTLYDEEFGGKFLMQIFDKACDLDGEVVE
Sequence
>1759669..1759830
GranulibacterbethesdensisMLSSPLLSSSVEASAPHMINNVQHRYERLTSTPFRLLIVPRMMQSMHHPVAQL
Sequence
>complement(1759855..1761348)
GranulibacterbethesdensisMSVFLKGKSFMTSYGITPSGFIKRRMSDIGAEIITTLQNAFGAEIATQPDTVLGQIVATFAEREAALWEMAEGVYNAMYPATASGSNLDKAVSFTGVTRLQATRSQVYCVLYGDAGTLVPAGTAAPQQAGLTRFLLAADTEISPDTLADVSIGVSSAVAGQSYSIVLNSVSFSITAASANAPAILAQLVAAVSAAGYNASVQGSGGSAVLRMVTDGRRTISVATSSLLIMTEMGTPGLFIARDYGPYTAPANSITTISNTISGLKRLLNLQDATPGRLYETDSALRARYARGVYRLGAGTLPSIRASLLQNVQGVTTAMVIENDTASVDADGRPPHSVECIVEGGEDAAVAAQIQAVKPAGITAYGLNSQIVQISTGVRNGAEWCNIGFTRPVRRYIWITCKVTTLSEETFPADGLLRIQQSLNDTGATLDIAEDVIVQRFLGPIYETVSGIASLTLSLAVSNDPATMPASGAYTQANISIGARERAIFDTTRIYVS
Sequence
>complement(1761414..1762334)
GranulibacterbethesdensisMKYLQKMNLSERKIIVKFYSTNNDVLIIEKLRVFFNIKRKYSNSGNNIELNICNIDNLSLNFILKSNKMELYIGYEERIFLAFLGRVDSLKTYHINADYITSIVAFDGNDILSHSLSSYTGENGVYVRDIIEAAARDARLNLKMAPDIGRRAWKHGYSFYGSSKDMLDDACKAEGLQYSVQNGVIQISKKNNSSSTVDTLLTMENGLIRYIDMIYKTPRASVFTRGINPTNNPYIKNIVSADAPEQGLKIYSLMRPDLMPGDMVRIQNPNTGTKRYRIDTIEHNGDSMPVKETELGTWTSTITLVE
Sequence
>complement(1762331..1762855)
GranulibacterbethesdensisMMVNAKHLCTALLVFSTSCVSIPALADVADQKDLERYERDFFIQKEKERLHNQEIENKQTPEMIERMKREYSVPAGPYHNFRGKIAEKINNDFWEEIQRKYPDFHTVLFYATINDSGDWFSCINIEKILKSGAKYWINAIKSSNGWILYSNEVGDKIYMPIMLQACRADGEIIE
Sequence
>complement(1763009..1763614)
GranulibacterbethesdensisMIMTVDIKQIFKNMIALHCDRINTTMPGTIVSYNPATRRAVVQLSLSKTSPEGIVLKAPRVVSVPVVFPTGGGVAITWPLHPGDGVMLHFCQRSLENWLDRGDDVVDDFRQSNISDAIAVPGLNHGAATDPAHAENMVIAFGSASMEITPSGGIVLNAPGGLSIKGKVTGDQDAVFNSISTSTHTHTGVQPGSGRSGPPSA
Sequence
>complement(1763650..1764330)
GranulibacterbethesdensisMTMKHQNLAGLAVMLCVGLTCFPALAEKICVERSSRVIDMDKDTPGDIHRFCEVYGECFYQNQYTDVTKRCTEIPETKSERERRLIQNEINYRQYLRDEKYLETIEKNRTPEELEELRKQCVVPPGPYYEYRGKEKEKLFKKFEDKLAISFEGNDLMKPSGHISINDNGQWFVCYSAWLNLKNGYQQRHDWIMSSEGWMIDNFQVGRSFFNEIEKKACYSNGEIAE
Sequence
>complement(1764446..1764835)
GranulibacterbethesdensisMKGFSMGYDILLSNATRDVVLTNGDLILSDGLARVRQEIGITLRAWRGEWFLDLDFGIPYLQNVLVKEPQRVVLQSIFAAAITSVPDVEAIESLTATLDRPSRTLSIVFSARTRFGMVSDIIPLGIGGA
Sequence
>complement(1764863..1765555)
GranulibacterbethesdensisMPKTRPFCPASRLISLRFRDVAQWQERRRERKGARCSALCGIALAMSVLILAPAMAQTRDVAPHPAPALASIGAVQRAELHARAHEAPGAAAAPPIRVSQQPVQHVPDSESAGMRRSAEAALEAKLGRGISISDAHAARVGEGKGGESQWYICGSVTRSGDGAVESAGHDSGRFVAASSGALLLESDRHADFGWTWAHVCSPENAPHNPPSAVSPPALPPVSAGGKRAGQ
Sequence
>1765431..1765664
GranulibacterbethesdensisMPHRALQRAPFRSLRRSCHWATSRKRNEISLEAGQKGRVFGMGTDRSIQGQAEMRRRPGRKSASRLLPHQPLFNGRK
Sequence
>complement(1765869..1766228)
GranulibacterbethesdensisMQLISVPDLNDSVMEAELDGQTFFLHLSWNSEAGFWTIGLQDATRTTLLEGLPVLGNTPLIGRYRTEAMPQGELVAIPPDTALEIGQERIGRADLPGEGGASLVYVSAAEMAASLEGAA
Sequence
>complement(1766247..1766948)
GranulibacterbethesdensisMLNTLDLIFGASGQTYLEYQATPRRITPSPEHKGGGEAANVEQARPGIVPATKGALHLDLLSMETYQLPSLATQYPVEQGMPISDGIIPQSARLTITGAVSSANATLFQPWNLGLRGISRLEDTVKLLENIHTAHLPVTVVTGLHVYPNMAMTGCDITRGISKDGESQSRTLKIKLDFLQIRIVQADVAVSGNTAAEVSGKTGSSAIPSGKAQSATPPPSLITRVATALGLTA
Granulibacter bethesdensis strain NIH8
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
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Length: 2738877 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: GbCGDNIH8_8586 (Region 1)
Locus: GbCGDNIH8_8586ORF Start: 1753470
ORF Stop: 1754714
Strand: Backward
Protein Sequence: MSFFNRFSSLWASKGTVSPPSDTQSDQGFSYLGQIPPSVELFNGMFQERDWKIKWLYQQISSVIGLDGSQPSETETGKAGGVLKNWFLPIRNPTILGTTTMLGSLELGSQSVSSVAYIDFHTDGTNTDYNARIIALGGSPGQIGSAGISFYCSDVFVPTIQSNVDNGNRAATTAFVQSRVSSAISSAVSSANTYTDGKQPGGLTRELVLGATTTWSVPSGVTRIKARVWGGGGGSGGTGQTNDAARGGGGGGYVECYFSVVPGDSLSIVVGGGGSGGAPGNYGVTGGDSAISKNGTTFIYVHGGGGGQGGSGSGIMVGGGAGGDVPVAPSGSLSRTGDSSGIAILMGQSGSTYLLVCSAGGGVFWGGWTQRIAYAGTQSVAGPSGVYPGGGAGGSAHSQQYGSPGAAGLVILEY
Homolog/Ortholog Species: Fiber protein
Homolog/Ortholog Protein: GbCGDNIH8_8586, putative tail fiber protein, phage(gi238801675), PHAGE_Burkho_BcepIL02_NC_012743
Homolog/Ortholog E-Value: 8.63e-05
Locus 2: GbCGDNIH8_1553 (Region 1)
Locus: GbCGDNIH8_1553ORF Start: 1754771
ORF Stop: 1756138
Strand: Backward
Protein Sequence: MHAGFCASAASDCSGHCHMIAANELNTAFGTKRETAASYITADGKLVIVGPNVLRPSYADDGSYLGALTEGASTNYLPDSMLTPDGKSWSGNFPAITISGLMKDGFSCLQSDFPALNTSASAQMSLGDPVSAQAGETWWLSAWGLMLGSSATAPLVSLCLASGSAKVMQAFPSGTASGRLVRIRISLQVPAGQNAVSASLVANGATGSSAVSMLFSAPQLEKKRVTSFIPTSTGPASRVSDRVFYIPDADPGNGQVPDATNMVFGRDHGVVAWEHMLAQFAASSDLQSLVQALYPACTTLDTALQAMMNNRVLDQATGDQLDGIGDILGQSRMVGPANATKLEDDQYRRLLKLKILLNNAHGTTEDLRAAFCALFNADSTLIQDNGDASLTAVVGRFISADDLAFARSIKGFPKPAGVGLIQMQYDPAKPFGFQQQSYMGFGSGCMARALDNIIA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_1553, hypothetical protein, phage(gi985769592), PHAGE_Pseudo_VCM_NC_029065
Homolog/Ortholog E-Value: 4.66e-11
Locus 3: GbCGDNIH8_1554 (Region 1)
Locus: GbCGDNIH8_1554ORF Start: 1756326
ORF Stop: 1756928
Strand: Backward
Protein Sequence: MSDNIKQILKNLIASHCDRINTTMPGTIVSYDTTTRRAVVQLSLSKTSPDAEIIKAPRIVDVPVVFPSVGTVGITWPLHPGDGVMLHFCQRSLENWKDAGSDIVDNFRQTNITDAIAVPGLAHSKATAPAHAENMVIAFGSASLELTPSGGIVLNAPGGFTIKGAVSGDQDAVFGGISVKTHAHTGVQPGSGRSGPPSAG
Homolog/Ortholog Species: Plate protein
Homolog/Ortholog Protein: GbCGDNIH8_1554, phage baseplate assembly protein V, phage(gi327198581), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 4.46e-18
Locus 4: GbCGDNIH8_1555 (Region 1)
Locus: GbCGDNIH8_1555ORF Start: 1756950
ORF Stop: 1758002
Strand: Backward
Protein Sequence: MSFRWGSGRMISLNNRKYEIIFTSKQGVVKYTNIKSKINIKRMYNNSGNSIKIDLYNLSQQSLRIIENSQDMEVYCGYESGPFSLAFSGSPYTIKSSHRNADYIVTVIGFDGSDLLSRSLISFTGEKGIAVRDIIEAAARNAKMTLNMADGIGDRRLKSGFSFYGSAKDMLEGICHSVGLQYSVQNKTIQVTRNGETTTRPPVLLSMETGLIRYIEKTVQGPRSSAIIRDLNPADNPYLKELVSGVGPVEGVQVYSLMRPDLNPGDRVLLQQAKAYKEFRVDTIEHNGDTMPDQNAEVGTWTSTINLVSLEFFSAAVGKEAQDGLSSLKNAIQAEKKRQEEINKFGYKYY
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_1555, hypothetical protein, phage(gi327198580), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 5.50e-14
Locus 5: GbCGDNIH8_1560 (Region 1)
Locus: GbCGDNIH8_1560ORF Start: 1757972
ORF Stop: 1758502
Strand: Backward
Protein Sequence: MYQTMKYKNLVFAAVLLGSSLSCGIAVADVWDPKLLNRLQKGLQEEIERREKKNEAIESKLTPEILGKLRQKYDVPPGPYHLYRGEKENLFTQSFWDELKKRNPKIYWSESHVTINEQGDWFVCMTTEEILNNDIPRREFAIKSSRGWTLYGEEVAGTFLKEIFHKTCHSDGEVVE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_1560, Hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 6: GbCGDNIH8_8587 (Region 1)
Locus: GbCGDNIH8_8587ORF Start: 1758575
ORF Stop: 1759132
Strand: Backward
Protein Sequence: MNSLQDRKYEFIFASDERVVKYKNIKAKINIKRMYNNSGNSIKIDLYNISEKSLGIIEKSKDMEVYCGYESGPFSLAFSGSPYTIKSSHRNADYIVTVIGFDGSDLLSRSLISFTGEKGIAVRDIIEAAARNAKMTLNMADGIGDRRLKSGFSFYGSAKDMLEGICHHVGLQYSVQNKTIDTIII
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_8587, hypothetical protein, phage(gi472339843), PHAGE_Psychr_pOW20_A_NC_020841
Homolog/Ortholog E-Value: 1.71e-08
Locus 7: (Region 1)
Locus: ORF Start: 1759129
ORF Stop: 1759647
Strand: Backward
Protein Sequence: MKYKNLVFAAVLLGSSLSCGIAVADVWDPALLHRLQKGLAEEIERREKKNEAIESKLTPEILEKLRQKYYVPPGPYHLYRGEKENLFTQSFWDELKRRNPKIYWSESHVTINEQGDWFVCMTTEEILNNDIPRRALSIKSSQGWTLYDEEFGGKFLMQIFDKACDLDGEVVE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: , Hypothetical protein, GbCGDNIH8_1560a
Homolog/Ortholog E-Value: N/A
Locus 8: GbCGDNIH8_8588 (Region 1)
Locus: GbCGDNIH8_8588ORF Start: 1759669
ORF Stop: 1759830
Strand: Forward
Protein Sequence: MLSSPLLSSSVEASAPHMINNVQHRYERLTSTPFRLLIVPRMMQSMHHPVAQL
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_8588, Hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 9: GbCGDNIH8_1561 (Region 1)
Locus: GbCGDNIH8_1561ORF Start: 1759855
ORF Stop: 1761348
Strand: Backward
Protein Sequence: MSVFLKGKSFMTSYGITPSGFIKRRMSDIGAEIITTLQNAFGAEIATQPDTVLGQIVATFAEREAALWEMAEGVYNAMYPATASGSNLDKAVSFTGVTRLQATRSQVYCVLYGDAGTLVPAGTAAPQQAGLTRFLLAADTEISPDTLADVSIGVSSAVAGQSYSIVLNSVSFSITAASANAPAILAQLVAAVSAAGYNASVQGSGGSAVLRMVTDGRRTISVATSSLLIMTEMGTPGLFIARDYGPYTAPANSITTISNTISGLKRLLNLQDATPGRLYETDSALRARYARGVYRLGAGTLPSIRASLLQNVQGVTTAMVIENDTASVDADGRPPHSVECIVEGGEDAAVAAQIQAVKPAGITAYGLNSQIVQISTGVRNGAEWCNIGFTRPVRRYIWITCKVTTLSEETFPADGLLRIQQSLNDTGATLDIAEDVIVQRFLGPIYETVSGIASLTLSLAVSNDPATMPASGAYTQANISIGARERAIFDTTRIYVS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GbCGDNIH8_1561, co-chaperonin for GroEL, phage(gi100075), PHAGE_Shigel_Sf17_NC_042076
Homolog/Ortholog E-Value: 1.33e-52
Locus 10: GbCGDNIH8_1562 (Region 1)
Locus: GbCGDNIH8_1562ORF Start: 1761414
ORF Stop: 1762334
Strand: Backward
Protein Sequence: MKYLQKMNLSERKIIVKFYSTNNDVLIIEKLRVFFNIKRKYSNSGNNIELNICNIDNLSLNFILKSNKMELYIGYEERIFLAFLGRVDSLKTYHINADYITSIVAFDGNDILSHSLSSYTGENGVYVRDIIEAAARDARLNLKMAPDIGRRAWKHGYSFYGSSKDMLDDACKAEGLQYSVQNGVIQISKKNNSSSTVDTLLTMENGLIRYIDMIYKTPRASVFTRGINPTNNPYIKNIVSADAPEQGLKIYSLMRPDLMPGDMVRIQNPNTGTKRYRIDTIEHNGDSMPVKETELGTWTSTITLVE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_1562, hypothetical protein, phage(gi31544047), PHAGE_Haemop_Aaphi23_NC_004827
Homolog/Ortholog E-Value: 1.51e-12
Locus 11: GbCGDNIH8_7135 (Region 1)
Locus: GbCGDNIH8_7135ORF Start: 1762331
ORF Stop: 1762855
Strand: Backward
Protein Sequence: MMVNAKHLCTALLVFSTSCVSIPALADVADQKDLERYERDFFIQKEKERLHNQEIENKQTPEMIERMKREYSVPAGPYHNFRGKIAEKINNDFWEEIQRKYPDFHTVLFYATINDSGDWFSCINIEKILKSGAKYWINAIKSSNGWILYSNEVGDKIYMPIMLQACRADGEIIE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_7135, Hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 12: GbCGDNIH8_1564 (Region 1)
Locus: GbCGDNIH8_1564ORF Start: 1763009
ORF Stop: 1763614
Strand: Backward
Protein Sequence: MIMTVDIKQIFKNMIALHCDRINTTMPGTIVSYNPATRRAVVQLSLSKTSPEGIVLKAPRVVSVPVVFPTGGGVAITWPLHPGDGVMLHFCQRSLENWLDRGDDVVDDFRQSNISDAIAVPGLNHGAATDPAHAENMVIAFGSASMEITPSGGIVLNAPGGLSIKGKVTGDQDAVFNSISTSTHTHTGVQPGSGRSGPPSA
Homolog/Ortholog Species: Plate protein
Homolog/Ortholog Protein: GbCGDNIH8_1564, baseplate assembly protein, phage(gi966201439), PHAGE_Salmon_SEN34_NC_028699
Homolog/Ortholog E-Value: 9.40e-17
Locus 13: GbCGDNIH8_1565 (Region 1)
Locus: GbCGDNIH8_1565ORF Start: 1763650
ORF Stop: 1764330
Strand: Backward
Protein Sequence: MTMKHQNLAGLAVMLCVGLTCFPALAEKICVERSSRVIDMDKDTPGDIHRFCEVYGECFYQNQYTDVTKRCTEIPETKSERERRLIQNEINYRQYLRDEKYLETIEKNRTPEELEELRKQCVVPPGPYYEYRGKEKEKLFKKFEDKLAISFEGNDLMKPSGHISINDNGQWFVCYSAWLNLKNGYQQRHDWIMSSEGWMIDNFQVGRSFFNEIEKKACYSNGEIAE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_1565, Hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 14: GbCGDNIH8_1566 (Region 1)
Locus: GbCGDNIH8_1566ORF Start: 1764446
ORF Stop: 1764835
Strand: Backward
Protein Sequence: MKGFSMGYDILLSNATRDVVLTNGDLILSDGLARVRQEIGITLRAWRGEWFLDLDFGIPYLQNVLVKEPQRVVLQSIFAAAITSVPDVEAIESLTATLDRPSRTLSIVFSARTRFGMVSDIIPLGIGGA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_1566, hypothetical protein, phage(gi327198582), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 5.32e-19
Locus 15: GbCGDNIH8_1567 (Region 1)
Locus: GbCGDNIH8_1567ORF Start: 1764863
ORF Stop: 1765555
Strand: Backward
Protein Sequence: MPKTRPFCPASRLISLRFRDVAQWQERRRERKGARCSALCGIALAMSVLILAPAMAQTRDVAPHPAPALASIGAVQRAELHARAHEAPGAAAAPPIRVSQQPVQHVPDSESAGMRRSAEAALEAKLGRGISISDAHAARVGEGKGGESQWYICGSVTRSGDGAVESAGHDSGRFVAASSGALLLESDRHADFGWTWAHVCSPENAPHNPPSAVSPPALPPVSAGGKRAGQ
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_1567, Hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 16: GbCGDNIH8_8589 (Region 1)
Locus: GbCGDNIH8_8589ORF Start: 1765431
ORF Stop: 1765664
Strand: Forward
Protein Sequence: MPHRALQRAPFRSLRRSCHWATSRKRNEISLEAGQKGRVFGMGTDRSIQGQAEMRRRPGRKSASRLLPHQPLFNGRK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_8589, Hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 17: GbCGDNIH8_1568 (Region 1)
Locus: GbCGDNIH8_1568ORF Start: 1765869
ORF Stop: 1766228
Strand: Backward
Protein Sequence: MQLISVPDLNDSVMEAELDGQTFFLHLSWNSEAGFWTIGLQDATRTTLLEGLPVLGNTPLIGRYRTEAMPQGELVAIPPDTALEIGQERIGRADLPGEGGASLVYVSAAEMAASLEGAA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_1568, hypothetical protein, phage(gi327198579), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 1.50e-07
Locus 18: GbCGDNIH8_1569 (Region 1)
Locus: GbCGDNIH8_1569ORF Start: 1766247
ORF Stop: 1766948
Strand: Backward
Protein Sequence: MLNTLDLIFGASGQTYLEYQATPRRITPSPEHKGGGEAANVEQARPGIVPATKGALHLDLLSMETYQLPSLATQYPVEQGMPISDGIIPQSARLTITGAVSSANATLFQPWNLGLRGISRLEDTVKLLENIHTAHLPVTVVTGLHVYPNMAMTGCDITRGISKDGESQSRTLKIKLDFLQIRIVQADVAVSGNTAAEVSGKTGSSAIPSGKAQSATPPPSLITRVATALGLTA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GbCGDNIH8_1569, hypothetical protein, phage(gi327198578), PHAGE_Erwini_phiEt88_NC_015295
Homolog/Ortholog E-Value: 1.82e-11
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download