Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1134366440 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1134366440.PHASTER.zip
gi|00000000|ref|LZCY01000053.1| Klebsiella pneumoniae strain 148 plasmid unnamed17 plasmid_17, 37024, gc%: 49.86%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 9Kb | incomplete | 20 | 11 | 27447-36471 info_outline | PHAGE_Entero_P1_NC_005856(4) | 52.41% | Show info_outline |
Region DNA
>1 27447-36471 TTATTTTTCGAAGGACTGCATGTTGCCCATAACCAGCCTGATGGCCTTATCTAACTCAGCCTGAACTGAA GCAGGAAGACGGGCAAATTCATAGGTCACTAAGCGTTTAGACGGATCGGTTTTCTTCCGGGCAAACTGCT TTTTGTCTTCAAACTCACGTAGCTTTTCAGTTTGTACAGTTTTCACTGGCGCTGGCTTCAGCTGCTTCGA ATGGCGTTTAAAAGAGTCCATAATTAGCGACTTACTTACGCTTTCAACTTTTGCTGCACTGATGTCTGCC TGCACTTTTCCGAGCAAATCAGACAGAGGCACACCTTTGCTATCTAAGTCCTCTGAAATTTTTAACAGCA GCTGGTAATCAGCAAGGGAGAGTTCATTGATAACCGGGAATAACTCGACCATTTCAGCTGGCACAGAAGC AGCTTGAAACGCTCGGGAAACGCTTGCCGGTGAGACGTCCTCTACGCGCGCAATTTCATCCTTAGACATG CCATTTGCGTACATAAATTGATATCTTTGACCTATCTCACGAAGCGTATGCTCACGCGCGGTCTGAATGT CTTTGGCAAGCTGACGAGCATCTTCAAGACTTATCTCATCTTCTGTAACCAGAATTTCGAATTTCGCGCC ACTGAAGATACATGCCGCCCGGCGCCGGGAACCATCTAACACTTCAATACAACCGTTAATAACTCGGCCG ATTGCTGGGAAAAATTGCTGCAGGTTGATAGTTCGCGTTATGTCGCTCACTGACTCAGGGGTTACATACC TTTGGTCGCGACCGTTAACAGCTGGATCCACAAATGTCTTCTCTTCAATATCACCATTCAAAATGGTTGA GAGGGTGAACTTGGCCTGATTACCGGACTTAAGGGTGAATACCTTCTCTGCTTCTTTGGTTTCGAGGCTA CGGATAAAATCTGAGCTATCACTACCTAAAATGTTTCGCCCGCGAGCTACTATTTTTTTCTTCACGCTGA TTGGCTCCTCAGGAATTCAATACGGTCAAACACAGCCTTCGTAAAATGCTCTGCTTCTGTACGCGCTTTT TTTAACGCGTCGTTGCTACCGGGATAAGATGCTGGGTTGGCACTAATAATCGTATCAAACGTTTCTCCGC AACGTTCAAAGCCATCCAGGCGGGGCAGGGAAGAGTCCAGTATGCTGCTTGTGTAGACTTCACGAGCAAG GCTATGTGAAACCAGATGATCGGGCTTGCCAGTCATTTTCGACATAAAACCAATACTGGCAGCCAGACGC GGTTCAATGCCTTCTTCTTCCAGCGTTTCCAGCATTTCAGGCAAGCGGGTAAGGTATTTCAACGTGGAAT GGAAATCGACTTGCGCCGGCGGAGTAGGGGTGAGAATAAGGTCACTTGCCGCCAAACCGTTTAGTAAAAA TGGATCGAGGTGCGGACCTGTATCAATCAGGATGAAATCGTAGTCATCAGCCACACGATCGATAATTATT TTGCGAAGCACTTCGTACTGGTTTACGCCCGGCAGGTGCTCGCTAACCAGCTCCTTCCATGCGCTGGCTA CAAAACCATCATCAATAGAAGCAGGAATAACATCTACACCTGGAATGATGGTTGGCCGTATCACTTCGTT ACGCAGGGTTTCAGCATCGACATCGTTTAGCATCGCTTGCGCGGCGGTTTCAAGAATGGAACCAATACTG TGCGTGTGATCGAGGAACATGGTGCTGGATGCCTGCGGATCAAGGTCAATAACCAGAATACGCAGATCGT GACGCAATAAATCCTGATGCACTCGCAACGCGTGCGCCAGCGTTACAGTTGATACGGTTTTGGATACGCC ACCTTTCAAGTTAACGACGAAAATAACGTAAGGCGATTGATGGATTTCACGATACTTCGGGATCTTGCGG TGGGCGTAAATATCAATAACATTCTGTACTGTAAGAGCATATTGCTCAACATTTCCGACGCGTTTCTTGT TGAAATCGTAGCCTGCATCTTCCATTTCTTTAATGGCCTGCTCCACGATGCGACGGCTTAGCTTGGGTAA TTTGGCTACTGCGTTCCGGGTAAATGTCTGGAAGTATTCTGTAAGGTTAAACTCTTTGCGTTGATCTTCA ATGTCCCGGCTCATTGACTCAAGCAATATGCCAGCTCGTCGCGCTATCGAGCCTACTCCACCGTAATCTC GTTTCATTCTGTTCTCCATGATGTTTTCAATGTAGAGGACATTGATTGTACAGCTCGGAGTGTACAACAA ATACCGTGACGTGCAAGAAATTATTGATATTGGTGTTTTTGTTGCACGTTCAGCGAGTGACTCAAAGGCT GAACGCTGATACATGTGTTTATAAATCGGCTCGGAAGTGAGCAAACAGGTGTGTTTACAAAGCGGAAACA ATATGAGAGGGAATAGATGTGTTTATAAAACGGATGCTGATGCTGTGTTACCGGGAAAACAGCAAACACT CGCAGTCACTGCGGCACATATCCGCTTTACAAACACAGTCAGGCGCTTTTACTCTCCATCTTTTAAGGCT TCAGACATAGCCTTAATGTCTGGCCTAGGCGTGCGACGGGTTATGATTAAGTGCCATTCACCATCCTTTT TAACGACATCGCCATCTAAATAACCGACCGCTTTAAGCTCGTCTATAGCCTTGTTAATCACTCGATTCTG CTGGTTATTGGGTGAGGTAAGCATTAGGCGACGTTTAATACGCGCGAACGATAGTGGTATTGGTCGCTCA GGAAGGCTCTCAATGAAAGTGTATAGGGCCTGTGCTGTCCCTTTGTTCGCAAGTTGCCGGATTATAAACA TCTGCAGAAGCACCTGACGGTCGAATTGATAAAGCTCCCAAAGAGACTCATCGGCGGTAAGTTCCATGAT GTCGTCTTTTTCGTCCCACTTACCACGACTTAACAGACCAGATACAACACCATTCCGATCCTTTTCTGAG GCAAGCTTGATAGTTGTGCTGCGAAGACGAATAAGAGAGTCGGCCAAGCGCGTTCTGAGTCCTTTATCTT TGTCCTTTGAGCTAAACCCGCAGAATGTAGCAAACTCGCTGAATGGAAGTTCAATGGTGCTGCTGTTTAA GCCATATTTCGAAAACGCGAGAATGATGCCAACCCACACCTTGAAGTCAGTCTCCATCGAAAGTCGTGGG CCGGTAATACGGATGTCTGTATAACCTTCGGCTCTTGCCAACTCTAAGCTTTGAAGTTCGCTACTCGCAT CAATACTGATATTTTCTGTGTCCTTTCCTTTTCGTTTTAAGGAAGGTAGAAACAGACCTAAGCGCATCAA AGCTACAGGCTGGACAGTAGCGTTTCTGGAAGGCATGAGCTTCTTATTTTCATCGATTTCTACGAGAACC GATTCAAGTGATAGATCTACACTTTTCTTATACATAAGGACTTATCCACAGTTAAAGGATCATCCACAGA CACAGCATGCGTAATCCCATTTATAAACACGCGCAATCCGTTTTATAAACACATATATCCGCTTTGTAAA CACAGAATACCGATTTACAAACACAAATATCCGACTTATAAACACATGAAATGGCTGTTAGCCTATGCAT GGCGCGGTTTTCAACGTACCGGGATCTGTTTGGATCATTATATGGATCTTTGCTGGATCAGATATTTGGA TCTGCCCGGTGGATAACTGGATAAGTTGTCCATTTAACTTCGAGCGTAAGCAGAATTTATCCGTGCAGTT CCCTGGTGCTTCCTCGCTCACTCGCGGGCTTCGCCCTGTCGTTCGGCTGCGGCGAGCACTACTGGCTCTC TCTGAAAAGCGAAATTTAACTGATCCTCGCTATGGGGATATCTTTCCAGCGGGTGGTGTACGCAGGGGAG AGCATGTCGCGTTTCATTTGCCATGATGGCGCTATCCCTCGTCCGGCAAACCAGAGCTGTCCCAGCCCGG AATGATTAATGCCATCGAGAACCTTCATCAGCTCAGCGCTGTGAGGACGTGGAGGACGTTCGTCGAACAG CTGCAGCTGCGAAACACCGGAGCCGGTGAAGTCATTCAGCATCACACCGGCTTTGGCATACCGGTGCCCG TCCTTCCAGATACGCTCCAGAGCCGTTGTGGCGGCCGCAATGATGTCCCGGGTGTCCTGAGTGGGGGTAA GCAGTTTCTCCGTGGCCACGTTGCCATAGTAAGGCTCTTTAACGGCGAACGGAGACGTTTTGATGAATAC GGAAATATGCCGGCAATACTGGCGCTCTTTACGCAGCTTTTCTGAGGCCCGCTCTGCGTACTGACAGACA GCCTGGCGGAGCGAATCGTACTCCGTGATTTTCTCTCCAAAACTGCGGCTGCAGACGATCTGCTGCTTTG TTGGCGGGGCTTCCTCAAGCGACATGCAGCTTTCCCCGTTCAGTTCGCGTACCGTTCGCTCAAGGACTAC GGAGAAATTTTTGCGGATAAAGGCCGGGTTCGTCAGGGCCAGATCGAGCGCGGTTTTGATGCCCAGAACA TTGAGCTTGCGTGCAATACGGTTTCCCACGCCCCAGATCTCTTCGACCGGCTGCAGTGAAAGCAGTTTCC GCGTTCGCTGTGGATTCCCCCGGGTGAGTGCGAGCACACCACGAAACTGTTTCCACTCCTTTGAGGCCCA CTGGGCTGATTTTGCGAGGGTTTTCGTTGGTCCGGCGCCCACACCGATGGTCAGACGGGTACAGTCATAC ACGTGCTGTCGCAGCTGCCGGCCGAAGTCCTCCAGGTCCATGCAGTGCTCCACACCGGTCAGATCGAGGA ACATCTCGTCAATCGAATACTGTTCCACCCCCGGAGCCAGTTCCTCCAGGCAGCTCATCACGCGCGCCGA CATGGATGCATAAAGTTCATAGTTGCTGGAGAACGCGTATATTTTTTCCGGGTATCTTTCGTTTTTCATC TGAAACCACGGCGTACCCATTTTGATCCAGGGCTTTGCCTCGGCACTTCTCGCGATTACGCAGCCATCGT TATTGCTGAGCACCACAACCGGCTTTCCTTTCAAATCCGGGCGGAAAACACGTTCGCAGCTGGCATAAAA GCTGTTCACATCGGCCAGGGCAAACATCAGTACATCTCCCTCGGGCGGTGGATGATGTGCGTGACGACGC CAAAGATATCCAGATCGTCCGGGTCGGGATAAATCGGCGACCAGGCGGCGTTCATGGGCTGCAGCGTCAG TCGTGGCGTCAGCAGCAACCGTTTGACCGTAAACTCCCCCTGCACGCTGGCCACAACAATATCGCCATGC CGGGGCTTCTCGGCACAGTCCACAACCAGCAGATCGCCATTGTAAAGGCTGCCGTCGGACATACTGTCAC CGCTGGCGCGAAGGTAGTAAGTCGCGCTCGGATGCCGTATGCAGTAATCATGGAGATCCAGGTCAGACTC GACGTAGTCAGCTGCAGGGCTGGGAAAACCGCAGCTGGCCAGGTCTGCAAACAACGGATGGGCCTGTGGC GGGAGTTCTTTCCCGGTGCTGAAAAGCTGCAGTTTCATCTTTCCTCCTGATGTCTAAATATACTGGTTAT GCATACAGTATATTTAACAGCGTGAGGATAATCCAGATCGCCTGCGACATGAACAGTATGAGTAACATAA ATTACTCAAAATGTTCATTAATATCATTTTGATTCATCAGTTTTACTCATAATGAGAAATAAGGCTTTTA TTTTTTCATTTTGCTCTTATAATATGTATCAAATTGAGTGTAATTGACGGAGCATAATGATGAATATTTA CTGCGATGATGGTTCAACTAATGTTAAGCTGGCATGGTTTGAAGGAAACGAGCTGCAGACCCGGGTTTCT GCTAACTCCTTCCGGCATGGCTGGAAAGTGGCGGAATTCAGTGCGGCAACGTTCAACTATCAGGTGGGTA CGCTGAAATACACCTGGGACAGCGTCAGCCGGGATGCCATCCCGACAACAAACGTGGAATATCAGTACGG TGATCTCAACCTGCTGGCCGTGCATCATGCGCTGCTGAACAGCGGACTGGAGCCGCAGCCGGTGAGCCTG ACCGTGACGCTGCCCCTGAGTGAGTATTACGACGGGGACTGCCAGCGGAACGAGGAGAACATACGACGCA AACGGGAAAACCTGATGCGTGAGCTGGTTCTGAATAAGGGCAGGGCATTTACCGTAACGGACGTGAAGGT GATGCCGGAATCACTACCGGCGGCGTTCTCCCGTCTCGCGGAGCTGAAGCCCGGCCCCGCTGAGACCACC CTGATTATCGATCTCGGTGGCACCACGCTCGATGCCGGTGTGATTGTCGGCCAGTTTGATGATATCAGTG CGGTGCACGGTAATCCGTCTGTCGGCGTGTCACAGGTCACCCGCGCAGCTGCAGGCGCGCTGCGGGCGGC AGACAGCGAAACCAGCGCCCTCATCGCTGACACTATCATCCGCAACCGCAATGATCGTCAGTATCTGCAG CGTGTGATCAACGATGCCGGTAAAATCGACGAGGTTCGGAACAAAATAACAGAGGCGATCACTTCCCTGG GGGCGCGTGTCACCAGTGAGCTGACGGCCTTCAGGAACGTTAACCGGGTATTCCTGGTCGGGGGAGGGGC TTCCCTCATAGAAGAAGCTATCCGTCAGGCCTGGCCTCTGGCTCCTGACCGTATCGAGGTTATAGGCGAT CCGCAGATGGCGCTGGCCAGGGAGATTGCCCTTTACAATAAAGAGGACTAAACGTGCCGGACGGCCAGTA TTCTTTCTATCTGCACAGCGACGATCGCACCGACATCGCGGCAATGGCAACCATCAGCACCATCTCACAG CCCCTGCGCGGTGAGTTCATCCGTACCGCCGCCACCGCCGGGGCGGTGGTATACCAGGTGGATGCCCGTT TACCGGCGCTGATCCCGGTGTTCTTTGCCGGGCAACTGAGCGCTGTCCGCCTTTGCGCCGTGATGGCCCT GGTCTCCGGAACCTGGTCCTCACTCACCGGCCTTCCGGATGAGCCCGAAAATGGTGAGGCAGCTCTGCCC GTGTCACCGGAGACAGAATACCAGCGCCGGCGTTACACCCTGACGCTTCAGAATGGCCGGAGTGGGGAAC GGGTGGAAAGTGTGCTGACGGAAGCGTCATCCCGTCTGCGTGGGGATCTGCTGAGAAACCTGATTATCAC CGGTCTTGCCCTCCACACGACGGCACCGGAGCTGCCGCGCCTGCTGGCCAGTATGCCGGTACCGCCCACC TCGGTCAGTGAGCTGCAGGCACTGGTTCAGCAGATGGCCGGCACCGCTGACGTGAACAGGGCTGCAGCTG CAGTACCGGATACGCCGACAGCATCTGCCGCGCCGGTGTCCGGGTCGGATACCCGGGAAATAAAGAAAAA TATGCGGCGTGCATTCGGTGACTAACAACGAATCACATCCACTACTACACCGATTTCAAATGACTGGCAT CCCAGGGAGGTTCTCATGTCACCAGGATTCAGAAATGTTCTCCGTCTCGCCCGCATTCCCGTCGACAGCA GTGAACCGGTGCGCAGAAAATTTGGCAGCCGGCTGATTGGCATTGTGACGGTATGTCTGCTTCCGCTTCT GGTTTTCGACGTTCCGCAGTGGGTTTTCATTTTGTCGCAGATCATCTGGGGGGCGGGCGTCTATATTGGC CTGTCTGTGGCCGGGGATAAATCCCTGAACCGCTGATACAAATTTTCTGATTGTTCAAAAAAAGAACAGG CGTAGTGGCGTCTGTTCTCCCGCGCTTCTCCGTCGTTTGCCTTCAGGTTATCCACAATCTTAAGCCCCGG ATTTGTGGACAGGTATGCCGGTAATTCCCCGTTCGCCTGGAGTTAACGCAAGCCTGCCGCCCGCTGCCAG TGTCTCGCGTCCGGTCTGGTACGGGACGGGCGGTTTTTCCGCTCCGGCCCGGCGTCGTTGAGAGTGTGCG CCAGTCCCTCGCCCTTTTAAGGAACGCCCTTCAAGCCGCTTTCGCGGCATATCCTTGCCGTCGAAAAGAC GGACGGCTGCGGTATTCCACGGTCGGCCTGACCCGTGACCGGACGCGATGAACAGGCAGCGTGCGGCAGG GAACGGTATCGCGGTGATGCCTCCTGCCCCCTCAGACTACAGGAGTGCTGCGATGTCCAGATTCATTCTC GGGAACTGTATTGATGTGATGCGCGGATTCCCCGACCGTGCCGTGGACCTTATTGTGACCGATCCGCCTT ACCTCGTCGGTTTTAAGGACCGTCAGGGCAGACAGATTGCCGGGGATGTGACGGACGAATGGCTGCAACC GGCCACGCTGGAGATGTACCGCGTCCTTAAAAAAGACGCACTGATGGTGAGCTTCTACAGCTGGAACCGT GTGGACCGCTTTATGGCCGCGTGGAAGGCGGCAGGATTCTATGCCGTGGGCCAGCTTGTGTTCACCAAAA ACTATGCCTCCAACCGTCGTAACGCCAGGGCCCGACGCGGATTTGTGGACTACTGCCATGAAGGGGCTTA TGTCCTTGCCAAAGGCCGCCCCGTGCCGCCCCTTAAACCGCTGCCGGATGTGCTGCCCTTCCCGTATACC GGTAATACCCTGCATCCGACGCAGAAACCGGTGGAGGCGCTACAGCCGCTGATTGAGTCATTCAGCGCCC CGGGCGCGATTGTTCTCGACCCGTTTGCCGGAAGCGGTTCGACCTGCGTCGCTGCATACCGTGCCGGACG CCGCTATATCGGCATCGAAATGCTGGCGCAGTACCACCGGGCCGGAACCGAACGACTGGCCGCCATGCAC CGGGCCGTCAATACCCCGGCGGCGAACGATGAATGGCTCCCGGAGGCCGCGTAATGAATTACGACGGACA CGAAGCCCTGCGCCGCGATATGGCCGGGCTGGCGAACAATCTTTGCGACCTGAAAACCACCCTGAAAGTG CTGGAAGACACGTACCACTACCGGTACGACGGACTGGCGGAACGGCTTGCCGGTATCAGTCTGCGACGTC TCAGCGTCCTGATGGATGAGGCGTTCAATATCGCCCTGATGCTCGATGAAAGCTTTCTGGATTGA
Region Details
| Region | 1 |
| Region Length | 9Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | recombinase |
| Region Position | 27447-36471 |
| # tRNA | 0 |
| # Total Proteins | 11 |
| # Phage Hit Proteins | 8 |
| # Hypothetical Proteins | 2 |
| Phage + Hypothetical Protein % | 90.9% |
| # Bacterial Proteins | 1 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_P1_NC_005856(4) PHAGE_Salmon_SJ46_NC_031129(4) PHAGE_Entero_N15_NC_001901(3) PHAGE_Cronob_ENT39118_NC_019934(2) PHAGE_Yersin_PY54_NC_005069(2) PHAGE_Strept_phiARI0004_NC_031920(1) PHAGE_Entero_P88_NC_026014(1) PHAGE_Staphy_vB_SepS_SEP9_NC_023582(1) PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1) PHAGE_Bacill_SPbeta_NC_001884(1) PHAGE_Staphy_Stau2_NC_030933(1) PHAGE_Klebsi_phiKO2_NC_005857(1) PHAGE_Salmon_SSU5_NC_018843(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 36.36% |
| GC % | 52.41% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|LZCY01000053.1| Klebsiella pneumoniae strain 148 plasmid unnamed17 plasmid_17, 37024, gc%: 49.86%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 11 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(27447..28421) | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A9Z49_29090; phage(gi100010) | 1.34e-64 | Showinfo_outline |
| 2 | complement(28418..29623) | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A9Z49_29095; phage(gi100009) | 5.59e-172 | Showinfo_outline |
| 3 | complement(29945..30841) | PHAGE_Entero_P1_NC_005856: RepA; A9Z49_29100; phage(gi46401683) | 9.11e-91 | Showinfo_outline |
| 4 | complement(31242..32513) | PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; A9Z49_29105; phage(gi431811050) | 0.0 | Showinfo_outline |
| 5 | complement(32513..32944) | PHAGE_Cronob_ENT39118_NC_019934: protein umuD; A9Z49_29110; phage(gi431811072) | 3.53e-35 | Showinfo_outline |
| 6 | 33176..34147 | PHAGE_Entero_P88_NC_026014: recombinase; A9Z49_29115; phage(gi744692717) | 1.53e-77 | Showinfo_outline |
| 7 | 34150..34821 | Mediator of plasmid stability; A9Z49_29120 | 0.0 | Showinfo_outline |
| 8 | 34882..35112 | hypothetical protein; A9Z49_29125 | 0.0 | Showinfo_outline |
| 9 | 35231..35347 | hypothetical protein; A9Z49_29130 | 0.0 | Showinfo_outline |
| 10 | 35549..36250 | PHAGE_Staphy_Stau2_NC_030933: hypothetical protein; A9Z49_29135; phage(gi100063) | 9.40e-28 | Showinfo_outline |
| 11 | 36250..36471 | PHAGE_Entero_N15_NC_001901: gp50; A9Z49_29140; phage(gi9630517) | 6.40e-06 | Showinfo_outline |
Sequence
>complement(27447..28421)
KlebsiellapneumoniaeMKKKIVARGRNILGSDSSDFIRSLETKEAEKVFTLKSGNQAKFTLSTILNGDIEEKTFVDPAVNGRDQRYVTPESVSDITRTINLQQFFPAIGRVINGCIEVLDGSRRRAACIFSGAKFEILVTEDEISLEDARQLAKDIQTAREHTLREIGQRYQFMYANGMSKDEIARVEDVSPASVSRAFQAASVPAEMVELFPVINELSLADYQLLLKISEDLDSKGVPLSDLLGKVQADISAAKVESVSKSLIMDSFKRHSKQLKPAPVKTVQTEKLREFEDKKQFARKKTDPSKRLVTYEFARLPASVQAELDKAIRLVMGNMQSFEK
Sequence
>complement(28418..29623)
KlebsiellapneumoniaeMKRDYGGVGSIARRAGILLESMSRDIEDQRKEFNLTEYFQTFTRNAVAKLPKLSRRIVEQAIKEMEDAGYDFNKKRVGNVEQYALTVQNVIDIYAHRKIPKYREIHQSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTHSIGSILETAAQAMLNDVDAETLRNEVIRPTIIPGVDVIPASIDDGFVASAWKELVSEHLPGVNQYEVLRKIIIDRVADDYDFILIDTGPHLDPFLLNGLAASDLILTPTPPAQVDFHSTLKYLTRLPEMLETLEEEGIEPRLAASIGFMSKMTGKPDHLVSHSLAREVYTSSILDSSLPRLDGFERCGETFDTIISANPASYPGSNDALKKARTEAEHFTKAVFDRIEFLRSQSA
Sequence
>complement(29945..30841)
KlebsiellapneumoniaeMYKKSVDLSLESVLVEIDENKKLMPSRNATVQPVALMRLGLFLPSLKRKGKDTENISIDASSELQSLELARAEGYTDIRITGPRLSMETDFKVWVGIILAFSKYGLNSSTIELPFSEFATFCGFSSKDKDKGLRTRLADSLIRLRSTTIKLASEKDRNGVVSGLLSRGKWDEKDDIMELTADESLWELYQFDRQVLLQMFIIRQLANKGTAQALYTFIESLPERPIPLSFARIKRRLMLTSPNNQQNRVINKAIDELKAVGYLDGDVVKKDGEWHLIITRRTPRPDIKAMSEALKDGE
Sequence
>complement(31242..32513)
KlebsiellapneumoniaeMFALADVNSFYASCERVFRPDLKGKPVVVLSNNDGCVIARSAEAKPWIKMGTPWFQMKNERYPEKIYAFSSNYELYASMSARVMSCLEELAPGVEQYSIDEMFLDLTGVEHCMDLEDFGRQLRQHVYDCTRLTIGVGAGPTKTLAKSAQWASKEWKQFRGVLALTRGNPQRTRKLLSLQPVEEIWGVGNRIARKLNVLGIKTALDLALTNPAFIRKNFSVVLERTVRELNGESCMSLEEAPPTKQQIVCSRSFGEKITEYDSLRQAVCQYAERASEKLRKERQYCRHISVFIKTSPFAVKEPYYGNVATEKLLTPTQDTRDIIAAATTALERIWKDGHRYAKAGVMLNDFTGSGVSQLQLFDERPPRPHSAELMKVLDGINHSGLGQLWFAGRGIAPSWQMKRDMLSPAYTTRWKDIPIARIS
Sequence
>complement(32513..32944)
KlebsiellapneumoniaeMKLQLFSTGKELPPQAHPLFADLASCGFPSPAADYVESDLDLHDYCIRHPSATYYLRASGDSMSDGSLYNGDLLVVDCAEKPRHGDIVVASVQGEFTVKRLLLTPRLTLQPMNAAWSPIYPDPDDLDIFGVVTHIIHRPREMY
Sequence
>33176..34147
KlebsiellapneumoniaeMNIYCDDGSTNVKLAWFEGNELQTRVSANSFRHGWKVAEFSAATFNYQVGTLKYTWDSVSRDAIPTTNVEYQYGDLNLLAVHHALLNSGLEPQPVSLTVTLPLSEYYDGDCQRNEENIRRKRENLMRELVLNKGRAFTVTDVKVMPESLPAAFSRLAELKPGPAETTLIIDLGGTTLDAGVIVGQFDDISAVHGNPSVGVSQVTRAAAGALRAADSETSALIADTIIRNRNDRQYLQRVINDAGKIDEVRNKITEAITSLGARVTSELTAFRNVNRVFLVGGGASLIEEAIRQAWPLAPDRIEVIGDPQMALAREIALYNKED
Sequence
>34150..34821
KlebsiellapneumoniaeMPDGQYSFYLHSDDRTDIAAMATISTISQPLRGEFIRTAATAGAVVYQVDARLPALIPVFFAGQLSAVRLCAVMALVSGTWSSLTGLPDEPENGEAALPVSPETEYQRRRYTLTLQNGRSGERVESVLTEASSRLRGDLLRNLIITGLALHTTAPELPRLLASMPVPPTSVSELQALVQQMAGTADVNRAAAAVPDTPTASAAPVSGSDTREIKKNMRRAFGD
Sequence
>34882..35112
KlebsiellapneumoniaeMSPGFRNVLRLARIPVDSSEPVRRKFGSRLIGIVTVCLLPLLVFDVPQWVFILSQIIWGAGVYIGLSVAGDKSLNR
Sequence
>35231..35347
KlebsiellapneumoniaeMPVIPRSPGVNASLPPAASVSRPVWYGTGGFSAPARRR
Sequence
>35549..36250
KlebsiellapneumoniaeMSRFILGNCIDVMRGFPDRAVDLIVTDPPYLVGFKDRQGRQIAGDVTDEWLQPATLEMYRVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYTGNTLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAGTERLAAMHRAVNTPAANDEWLPEAA
Sequence
>36250..36471
KlebsiellapneumoniaeMNYDGHEALRRDMAGLANNLCDLKTTLKVLEDTYHYRYDGLAERLAGISLRRLSVLMDEAFNIALMLDESFLD
Klebsiella pneumoniae strain 148 plasmid unnamed17 plasmid_17
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 37024 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Locus 1: A9Z49_29090 (Region 1)
Locus: A9Z49_29090ORF Start: 27447
ORF Stop: 28421
Strand: Backward
Protein Sequence: MKKKIVARGRNILGSDSSDFIRSLETKEAEKVFTLKSGNQAKFTLSTILNGDIEEKTFVDPAVNGRDQRYVTPESVSDITRTINLQQFFPAIGRVINGCIEVLDGSRRRAACIFSGAKFEILVTEDEISLEDARQLAKDIQTAREHTLREIGQRYQFMYANGMSKDEIARVEDVSPASVSRAFQAASVPAEMVELFPVINELSLADYQLLLKISEDLDSKGVPLSDLLGKVQADISAAKVESVSKSLIMDSFKRHSKQLKPAPVKTVQTEKLREFEDKKQFARKKTDPSKRLVTYEFARLPASVQAELDKAIRLVMGNMQSFEK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: A9Z49_29090, hypothetical protein, phage(gi100010), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 1.34e-64
Locus 2: A9Z49_29095 (Region 1)
Locus: A9Z49_29095ORF Start: 28418
ORF Stop: 29623
Strand: Backward
Protein Sequence: MKRDYGGVGSIARRAGILLESMSRDIEDQRKEFNLTEYFQTFTRNAVAKLPKLSRRIVEQAIKEMEDAGYDFNKKRVGNVEQYALTVQNVIDIYAHRKIPKYREIHQSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTHSIGSILETAAQAMLNDVDAETLRNEVIRPTIIPGVDVIPASIDDGFVASAWKELVSEHLPGVNQYEVLRKIIIDRVADDYDFILIDTGPHLDPFLLNGLAASDLILTPTPPAQVDFHSTLKYLTRLPEMLETLEEEGIEPRLAASIGFMSKMTGKPDHLVSHSLAREVYTSSILDSSLPRLDGFERCGETFDTIISANPASYPGSNDALKKARTEAEHFTKAVFDRIEFLRSQSA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: A9Z49_29095, hypothetical protein, phage(gi100009), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 5.59e-172
Locus 3: A9Z49_29100 (Region 1)
Locus: A9Z49_29100ORF Start: 29945
ORF Stop: 30841
Strand: Backward
Protein Sequence: MYKKSVDLSLESVLVEIDENKKLMPSRNATVQPVALMRLGLFLPSLKRKGKDTENISIDASSELQSLELARAEGYTDIRITGPRLSMETDFKVWVGIILAFSKYGLNSSTIELPFSEFATFCGFSSKDKDKGLRTRLADSLIRLRSTTIKLASEKDRNGVVSGLLSRGKWDEKDDIMELTADESLWELYQFDRQVLLQMFIIRQLANKGTAQALYTFIESLPERPIPLSFARIKRRLMLTSPNNQQNRVINKAIDELKAVGYLDGDVVKKDGEWHLIITRRTPRPDIKAMSEALKDGE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A9Z49_29100, RepA, phage(gi46401683), PHAGE_Entero_P1_NC_005856
Homolog/Ortholog E-Value: 9.11e-91
Locus 4: A9Z49_29105 (Region 1)
Locus: A9Z49_29105ORF Start: 31242
ORF Stop: 32513
Strand: Backward
Protein Sequence: MFALADVNSFYASCERVFRPDLKGKPVVVLSNNDGCVIARSAEAKPWIKMGTPWFQMKNERYPEKIYAFSSNYELYASMSARVMSCLEELAPGVEQYSIDEMFLDLTGVEHCMDLEDFGRQLRQHVYDCTRLTIGVGAGPTKTLAKSAQWASKEWKQFRGVLALTRGNPQRTRKLLSLQPVEEIWGVGNRIARKLNVLGIKTALDLALTNPAFIRKNFSVVLERTVRELNGESCMSLEEAPPTKQQIVCSRSFGEKITEYDSLRQAVCQYAERASEKLRKERQYCRHISVFIKTSPFAVKEPYYGNVATEKLLTPTQDTRDIIAAATTALERIWKDGHRYAKAGVMLNDFTGSGVSQLQLFDERPPRPHSAELMKVLDGINHSGLGQLWFAGRGIAPSWQMKRDMLSPAYTTRWKDIPIARIS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A9Z49_29105, DNA polymerase, phage(gi431811050), PHAGE_Cronob_ENT39118_NC_019934
Homolog/Ortholog E-Value: 0.0
Locus 5: A9Z49_29110 (Region 1)
Locus: A9Z49_29110ORF Start: 32513
ORF Stop: 32944
Strand: Backward
Protein Sequence: MKLQLFSTGKELPPQAHPLFADLASCGFPSPAADYVESDLDLHDYCIRHPSATYYLRASGDSMSDGSLYNGDLLVVDCAEKPRHGDIVVASVQGEFTVKRLLLTPRLTLQPMNAAWSPIYPDPDDLDIFGVVTHIIHRPREMY
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A9Z49_29110, protein umuD, phage(gi431811072), PHAGE_Cronob_ENT39118_NC_019934
Homolog/Ortholog E-Value: 3.53e-35
Locus 6: A9Z49_29115 (Region 1)
Locus: A9Z49_29115ORF Start: 33176
ORF Stop: 34147
Strand: Forward
Protein Sequence: MNIYCDDGSTNVKLAWFEGNELQTRVSANSFRHGWKVAEFSAATFNYQVGTLKYTWDSVSRDAIPTTNVEYQYGDLNLLAVHHALLNSGLEPQPVSLTVTLPLSEYYDGDCQRNEENIRRKRENLMRELVLNKGRAFTVTDVKVMPESLPAAFSRLAELKPGPAETTLIIDLGGTTLDAGVIVGQFDDISAVHGNPSVGVSQVTRAAAGALRAADSETSALIADTIIRNRNDRQYLQRVINDAGKIDEVRNKITEAITSLGARVTSELTAFRNVNRVFLVGGGASLIEEAIRQAWPLAPDRIEVIGDPQMALAREIALYNKED
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A9Z49_29115, recombinase, phage(gi744692717), PHAGE_Entero_P88_NC_026014
Homolog/Ortholog E-Value: 1.53e-77
Locus 7: A9Z49_29120 (Region 1)
Locus: A9Z49_29120ORF Start: 34150
ORF Stop: 34821
Strand: Forward
Protein Sequence: MPDGQYSFYLHSDDRTDIAAMATISTISQPLRGEFIRTAATAGAVVYQVDARLPALIPVFFAGQLSAVRLCAVMALVSGTWSSLTGLPDEPENGEAALPVSPETEYQRRRYTLTLQNGRSGERVESVLTEASSRLRGDLLRNLIITGLALHTTAPELPRLLASMPVPPTSVSELQALVQQMAGTADVNRAAAAVPDTPTASAAPVSGSDTREIKKNMRRAFGD
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: A9Z49_29120, Mediator of plasmid stability
Homolog/Ortholog E-Value: N/A
Locus 8: A9Z49_29125 (Region 1)
Locus: A9Z49_29125ORF Start: 34882
ORF Stop: 35112
Strand: Forward
Protein Sequence: MSPGFRNVLRLARIPVDSSEPVRRKFGSRLIGIVTVCLLPLLVFDVPQWVFILSQIIWGAGVYIGLSVAGDKSLNR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: A9Z49_29125, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 9: A9Z49_29130 (Region 1)
Locus: A9Z49_29130ORF Start: 35231
ORF Stop: 35347
Strand: Forward
Protein Sequence: MPVIPRSPGVNASLPPAASVSRPVWYGTGGFSAPARRR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: A9Z49_29130, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 10: A9Z49_29135 (Region 1)
Locus: A9Z49_29135ORF Start: 35549
ORF Stop: 36250
Strand: Forward
Protein Sequence: MSRFILGNCIDVMRGFPDRAVDLIVTDPPYLVGFKDRQGRQIAGDVTDEWLQPATLEMYRVLKKDALMVSFYSWNRVDRFMAAWKAAGFYAVGQLVFTKNYASNRRNARARRGFVDYCHEGAYVLAKGRPVPPLKPLPDVLPFPYTGNTLHPTQKPVEALQPLIESFSAPGAIVLDPFAGSGSTCVAAYRAGRRYIGIEMLAQYHRAGTERLAAMHRAVNTPAANDEWLPEAA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: A9Z49_29135, hypothetical protein, phage(gi100063), PHAGE_Staphy_Stau2_NC_030933
Homolog/Ortholog E-Value: 9.40e-28
Locus 11: A9Z49_29140 (Region 1)
Locus: A9Z49_29140ORF Start: 36250
ORF Stop: 36471
Strand: Forward
Protein Sequence: MNYDGHEALRRDMAGLANNLCDLKTTLKVLEDTYHYRYDGLAERLAGISLRRLSVLMDEAFNIALMLDESFLD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A9Z49_29140, gp50, phage(gi9630517), PHAGE_Entero_N15_NC_001901
Homolog/Ortholog E-Value: 6.40e-06
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download