Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1163072101 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1163072101.PHASTER.zip
gi|00000000|ref|CP020111.1| Klebsiella pneumoniae strain AR_0098 plasmid tig00000003, complete 43381, gc%: 46.84%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 17Kb | incomplete | 20 | 11 | 24874-41964 info_outline | PHAGE_Staphy_SPbeta_like_NC_029119(2) | 50.07% | Show info_outline |
Region DNA
>1 24874-41964 GCAAAAAACACTTGGCCATCCTCGCCGGTCGTGAAATTTTGCTGGCATAAGAAATAATCCCCCCGGTATG AGGGGCTTGTCTGAAAGGTTAGTGGTTGGGCTTACTGAGAGTGAACTGTAACCCGGCTACTGCTGCAAGC TGTGCAAGTGTTGTGATGGTCGGGTTTCCGTTCGGGGATAATGCGCGGTAGATACTCTGACGAGCAAGGC CGGATTTTTTGGCCGCCTCTGTTATACCCCCTGATTAGGGATCAGGTTAAAAACGAGCTGTATGACGTTC TAAGCGCATTTTACCCGCTCCGTTGAACCATGACCGGGTTAAAGCGGTTAAAACGCCTCTGAGGGCTTTT GAGAGCATTTAAGAATTGGATCGGAAAAGGATCCCGTCTGGATCTTTTAGAGAGATTACACCGCTCGCCG CAGCCGAACGACAGGGCGAAGCCCGCGAGTGAGCGAGGAAGCGGAATTTCCACGGGGTTTCAATAGAGCA CTTACGCGCTAAGGTTAATATTTGCTCAATTTTTGGTGGTGCAGTGCTCAGGGAGGCCAGACGGATCTAT CCTCTGGATTTATGCTGAGTTATCCACAGACGCTGTGCATTAAAAGCCTTATATTTTCTTCTTGATCTTA AAAACTTAAAAACTTAGCTCGCTTCAATTACCTGAAAATTATGGAAAAAAATTGCTAAAGGTGAGAGGAT TTTTCACGTAAGGTGAGAGGATTTTTCACGTAAGGTGAGAAGATTTTTAAGTTAAGGTAGTTAGATTTTT CACTAAAGATGAGAGGATTTTTCACGTAAGGTGAGAAGATTTTTAACGGTTTCCACAGTTTGACTGAACA TCAAGTGAAACATGCGGTTGTTGCTATCTTTAGATATGAAGATCCTCAGATCTTCATATCTAAAGGTGAG AGGTTTTTTAATTAAAGGTTGTATTGTTGTCTTGAATTACAACCTTTGTGGGGTTATGATTTGCCTACAT AGGAAAGGTTATATGAGGCTTATCGTGAAGACAGTAACGGGATTAACGAAAGTTAGACATAGAAATGAAG TTGGGGTAACTCTTGCATCCCTTTCCCTTTCAGCAAAAAGAGTGCTTTTTCTGGCTCTTTGCCAGATTGA TACAAAGGAAATGTTAGATGATGATATTTTGGAGGTTGATGCTGACTTTTTTTCAAAAGCTACTTCTTTA GATAAATATGCCTCTTATGCAGCTCTGAAAGAGGGAGCTAAAGTTCTTTCTTCAACTACGTTAGTTTTAA ACAGAGATGATTTAAAAAATTTGGCTGATGAACTTGGGATACTATCATCTAAGAATAAAATACCTGATCG CTTGGATTTAAACTTAACAGAATTCTGTGCCTATTACGATCATCTTGCAACTGTACGGATAAAATTCACA AATACAGCTAAGCGATATTTTTCTAAGTTGATTGGTTCTGAAAATAGATATACCACTCAGGTATTGAAAT CAGTTGTGTTGTTGAACAGTGTAAACTCAACAAACCTTTATCAAGTCATTAGGAAATATTACAGTCAGAA TAGTTCAAAAAAATCTTTTGATATATCCGTGGATGATTTAAAAGAGGAAATGGGACTTTATACTATTGAG GAAGGGGAGAAGAAATATAAGTATCCTAAATACTCATTTTTTGTTCGTGATGTTATCAATAAAAGCATTA ATGAGATAATTGAGAAAACGGAAATAAATCAGTTATCTTTCTCTGTTGTTGGGAAAAAAGGGAGAATGGC TCACATGCTTAGATTTGAGTTTAGTATAAATGAAAAATCCTCATCCTTTTCGGAAGATGATATGGCATTT TTAGAGGAGTTTGACAAAGTCGTTCCACCAAAAAAGAATAAGTGAGGCAAAACATGGCTAAAATATATGA GTTTCCGCAGGGAGCCGAACGAAGTAAGCTGAAAAAAGAAATCATCCGGGAACGTAAAAAACGATTGCGA GAAACGAACGGTAACCCGGTTATCCGGCACGCTAAATGGTTCTGGTTTTATCTACGTCTTGCTACGGCTG GCGCACTGCATTTAGTCTCTGTTATTTCTCTGGCAGTCCTGGGGGCTTTCAGTAAAGCTATTTTCTGGAT TGGTGGAATGCTCTGTGTTGTTACATGGTTCCACCTTGAGCGCCAGTTCTGGACGCCGCAAAATTTCACG ATTCCAGTAATCGTAACGCTGTGGGGATTGAGTTTGTTTGCCACTCCCCTGATGGAGCTGCTTAACAAAA AAATGCCGTGGTATCGTCTTCTGGTTCCTGATGCAAAGCACACTAGCACTGAGGCAACCAATGATGATCA GCCGTGAAGCAACAATGTTATCCAGTCGGCTTGCAGTGCTTCTTTCAGCCTTTTATCATCGGTTAATCAT AGCGCACGAGGCGAGTTCTTTTCACTGCGATGCAGGATAGGGCAAACGCCGCAAAATGACGTCTCTGACG CCATTCCGCAACGTTTGCCCGGTGACCTACAGTCGGTTCTTGTTGGAGAGAGTTATGAAATATCAGGTTA AAGAGTTTATTAACGAAAAATATTCTAAGGCTGTTAATATTTTAAAGGATAACCTTAAAGAACACTACCA TATTTTTTATGGTTTGAGATTAAGTGAGATTCTTTTTCCTGCCAGCGAATACGGCTCTGAAATGTTTTTT CAGGAGTTTGAAGCGATTAACAGTGTAATATTGCCTTTGGTGATTTTTGATTTGATAGACCGAAAGCCGA TTATGGTTATCGGCTTCGGTGAAGTATGTGGAGTTGATTCACTTGTTGATTCTGGTATAGAAGTTGTTTC TTTAGACGGTTTAAGCGATCTGCTACTGGTTGAAAAACTGACGCCATTATTTAACTAAACCTCTGGATAA CTATCTTTTCAGTTTTCCAGTAAGATTTTTTCTATATCTGAAAGCACTATTTTTTCAATGCTTTCTATAT AGTAATGCTCATTAAAACCTGTCATTTCTGTAAATTTTAGCTCTGCATCATCTTTCGAATAAGCAATAAC AACTCTGAAATCATTTTCCCACAAATCCCACCTGTATTTGTCTTTTATACGAACCCTGTACAATCCTTTT TGGATAGTGCCATCTTTTTTCTCTTCCTGTACTTTTTTTAATTTTTCATTTTGCACCTGTTGTTCAAGCC ATGATTTATTCATAAATCCCCCACGGTTAACGTCTTTAGGCTCGGTTTTTACTTAACGAAATCTTCCGGT TTTACACCTGTTTTTACCTTCATATACTTGCCCTCCCCCCCTTAGCTTCGGCTGAAGTTCGGTAAAGTAC CATCCGGCAACGGTAATAATGCCTAAAAATACAAAAATAGCAGGCTTCAGAACATCAATAGCTGATACAG CGCATAACTCAATATTGAGATTAGTACAAGTTCCCTCATCAGGTGCATAGAACCCCCATAAGCCTATACC TATAAGGAACATCCCCAATATCGGTTGGATGTATAACAAGTAGATATTAATAAGAGTTTTAATATATCTG AATATGAACATTTTTCTTTCCTTAGGTTTCTTTCTATTTTGGATTTCCAATTCTTAACCAATGTGATGGT TCGACAATCCATTCTCCGCAGTCATAGGCAACGGCCTTATTATGCCTGTTAGCGAACCATACTAACCAGG CTAATAATCGCTGATTGCCGCTGTATTTGGTTTATCTCTAACCATCACAACATATCTCTTTTTCTTAGCC ATAACGCTACCCTAATTTTGCAGATTCAAGCAGCCAGTGGTTTTTCAGGTTCTCGTCCAGGTTATCGAAT GCGGCCAGCGCTGCCTTTAGAACGGTTGTCTTGCTCTGGCCTGTTCTCTGCGCCTCCGCTTCCAGGATCT CCTCAAAGTACGCTGGCAGTCTGAAGTTCATCAACTTTGGTTTACCCGCTACAGGCGCTCTGGTAGCGCC GGAGATAAAACGCGCGGTTTCTGCGTTTGTTGCTGGTTGCTGAGATTCATCGATGTTCGGGCGGTTTAGT TTTAAAGCCATGAAAATTTCCCCTTGTACGGTATGCATTAATTGTAAATATCATAGTATCTTTATGGTGT ATTTACAATGTAAAGATTTCGATGAATATTGTTGATATTTCTATAAAATGCCAATTTCCTGTGCCACAAG TTCAATCTGTGCTTTCGCTGTTGAAAGGCTCGATGCCCGGCTAACGTCATGTACCCCTGCCCCTTCATTA CAGGCGCTTTCATACACATCCAGCTCGGATATCCGGGTTTTCAGAGGTTGAATCCAGATGTTGTCCGAAC GCAGTAATTTATCCAGATCAATGGCCGCTTTTCTGTGGCGGGGTTTCGCTGAGTTGATTCTGGTGAACAG CACCCACGGTTCCAGAGCTGCGTTAGCTTTCTGAGCGGTGCGGATTTTCTCTGTAACACTGGTCAGTGTT TCGCTTTCGAAATCAGAGGACGGCTTAACCAGTGTCACCACGATATCTGATACTGTCAGGGCGCTACGGA ACTCCTGGCTGTCGTGGCCGGGGCAATCGACAATGAGAACTTCACACAGCTTACTAAGGCGCTTAATTTC GTTGCTGACGTTTCCGTAAGCTGCGTGAACCGGGATAGTGAGTAAGCCGTTATCTGTCCGCTTTTCGTTC CAGCTCAACAGATCGTGGTTTTTATCTGTCTTCAGGATAATTACCGACTTACCTTTGTTGACCAGCATTG AGCCTGTGTTAGCCACGTAGGTGCTTTTGCCTACCCCACCTTTATCTGATACGACAAGCAAGATTTTACC CATTTCAGAATCCCTCTCTTTATGTTGTAAAGCTCATGTAAAGATATGAATGTCTTTACATGGTGTGTTT TTCGTAAAGATACTTTTGTCTTTACAGTGTCTTTATAATGCAATGGCTTTACCATGTAAAGCACAAATAA AGATATATTTATCTTTATGGTGTCTTTACATGGTAAATGTTGCTGTGTCTTTATGTGCGCTTTATGGTGT AAATCTTGGTGTGTCTTTACATCATCTTTATGTTGTAAATTTTTAGTGTGACGTTGTCACTATAGGGCTG GGGTCTGTTTGCTGGTTCTTTTTGAGTGTGCCTTCCCTGAACCAACTGAAATGGGTACTGTATGGGTGTG TCTGGTTAACTCAAAATGAACTGGTTCCCTATAATGACTCAAACAGTACCGAAAGGCTTTGTCAGAGCTT ACTTACGCGCATCCACGACTGAACAGGATGCAACACGCGCCCTGGACACGATAAATACCTTCGCCATCGA GCGCGGCCTGAGCATCTGTAACTACTACATTGAAAATGAATCAGGTTCTAAGCTTGAACGCCCTGAGTTG TTCCGGCTCCTGAAAGATTGTCAGCAAAACGATATCTTGCTGGTAGAGGATGTGGACAGGCTTTCACGCC TGGTAGGGGAGGACTGGAACACACTGAAGAAAATGATCCGGCAGAAAGATATCCGGGTTGTGGCCGTCAA CGTTCCGACAACCTGGCTCGCATCGGGTCACAATGATTTTGACAGCCGAATGTTTTCGGCCATAAACGAT ATGTTGCTGGATATGCTGGCCGCCGTCGCCAGGCGAGACTATGAACAGCGCCGGGAACGGCAGCAGCAGG GGATCGCCAGGGCGAAAAGGGAAGGGAAGTATAAAGGCCGCCAGGTTAATCAGTCTCGCTATGACGCCAT AAACAGGCTGATTGCGAGCGGCAGCTCCTGGAGCCAGATTCAAAAAGTGCTGGGTTGTAGCCGGGCGACT ATCAGCAAAGCTGTGAAGCAACAGACCGTTAACAAAATGAACCATGAACCTGAAGGTAGGGAGTAGTTAC AACATAATAAACAGTGTGTTGAAGAATAAAACTGATTCTTTATACTGTATATGCATACAGCTATATTGAT CGGAGGTTTTTCATGCCTAGACACTATGAAATTGACTCAGCCTGGCGTGCGAGCATTAAGCGTGAGCCGA ACGGTCGTCAGACAGTTACGACAGAAGCCTTTGTCAGCCAGCTTGCGCTGATTAATTTTCACTGGAGTTG TCGCCAAGCAAATCAGTGGATTGAAACCTACGTGACCGTTTTTAAAGACATTTCCACTCAGGAAGGAGAG AACCGGACATTCATGCTTTTTAACCCCAACGGAGGCCGTTAAAAATGGGTTTTCCATCGCCAGCAACCGA CTACCAGGAAAACAGGCTGTCACTCGATCAGCACTGTAATACAGGAGCGCCGGGAGTATTCTTTTTTCGA AGTGATACCTACTCTTTCCGGGAAGGGATAAAGCCTGGTGCGCTGCTCATAGTAGATTTTGGGGGCACGC CCGTTGACGGGTCTTTGGTGCTCTGTGTCCTGGAACAAGAATTCAGGATCATGCGATTGCGACTACACCC CAAGCGGTGTCTCCAGGAACTCGATAAGCTGGATAACTTCAGGGCTATACCTGATGACGATGAGGACGGG TTGGAGGTCAGGGGGGTCATTACGCACATTGTGGCACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGT CTTATTCAAAGGCCTTACATTTCAAAAACTCTGCTTACCAGGCGCATTTCGCCCAGGGGATCACCATAAT AAAATGCTGAGGCCTGGCCTTTGCGTAGTGCACGCATCACCTCAATACCTTTGATGGTGGCGTAAGCCGT CTTCATGGATTTAAATCCCAGCGTGGCGCCGATTATCCGTTTCAGTTTGCCATGATCGCATTCAATCACG TTGTTCCGGTACTTAATCTGTCGGTGTTCAACGTCAGACGGGCACCGGCCTTCGCGTTTGAGCAGAGCAA GCGCGCGACCATAGGCGGGCGCTTTATCCGTGTTGATGAATCGCGGGATCTGCCACTTCTTCACGTTGTT GAGGATTTTACCCAGAAACCGGTATGCAGCTTTGCTGTTACGACGGGAGGAGAGATAAAAATCGACAGTG CGGCCCCGGCTGTCGACGGCCCGGTACAGATACGCCCAGCGGCCATTGACCTTCACGTAGGTTTCATCCA TGTGCCACGGGCAAAGATCGGAAGGGTTACGCCAGTACCAGCGCAGCCGTTTTTCCATTTCAGGCGCATA ACGCTGAACCCAGCGGTAAATCGTGGAGTGATCGACATTCACTCCGCGTTCAGCCAGCATCTCCTGCAGC TCACGGTAACTGATGCCGTATTTGCAGTACCAGCGTACGGCCCACAGAATGATGTCACGCTGAAAATGCC GGCCTTTGAATGGGTTCATGTGCAGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATT TGCAACAGTGCCAACGCCGGGTTATTCTTATTTGTCGCTTCTTTACTCGCCTTTATCGGCCTTCACTCAA GGATGTATTGTGGTTATGCGTTATATTCGCCTGTGTATTATCTCCCTGTTAGCCACCCTGCCGCTGGCGG TACACGCCAGCCCGCAGCCGCTTGAGCAAATTAAACAAAGCGAAAGCCAGCTGTCGGGCCGCGTAGGCAT GATAGAAATGGATCTGGCCAGCGGCCGCACGCTGACCGCCTGGCGCGCCGATGAACGCTTTCCCATGATG AGCACCTTTAAAGTAGTGCTCTGCGGCGCAGTGCTGGCGCGGGTGGATGCCGGTGACGAACAGCTGGAGC GAAAGATCCACTATCGCCAGCAGGATCTGGTGGACTACTCGCCGGTCAGCGAAAAACACCTTGCCGACGG CATGACGGTCGGCGAACTCTGCGCCGCCGCCATTACCATGAGCGATAACAGCGCCGCCAATCTGCTGCTG GCCACCGTCGGCGGCCCCGCAGGATTGACTGCCTTTTTGCGCCAGATCGGCGACAACGTCACCCGCCTTG ACCGCTGGGAAACGGAACTGAATGAGGCGCTTCCCGGCGACGCCCGCGACACCACTACCCCGGCCAGCAT GGCCGCGACCCTGCGCAAGCTGCTGACCAGCCAGCGTCTGAGCGCCCGTTCGCAACGGCAGCTGCTGCAG TGGATGGTGGACGATCGGGTCGCCGGACCGTTGATCCGCTCCGTGCTGCCGGCGGGCTGGTTTATCGCCG ATAAGACCGGAGCTAGCAAGCGGGGTGCGCGCGGGATTGTCGCCCTGCTTGGCCCGAATAACAAAGCAGA GCGCATTGTGGTGATTTATCTGCGGGATACGCCGGCGAGCATGGCCGAGCGAAATCAGCAAATCGCCGGG ATCGGCGCGGCGCTGATCGAGCACTGGCAACGCTAAGCCGGCGGTGGCCGCGCGCGTTATCCGGCCCGCA GCACCTCGCAGGCGTGCCGGGCGATATGACTGGCGGCGGCATCGGAAAGATGCCGGTCGGTAATGATGGT GGTGAACCGGGTCAAAGGTAACGCCATAAACGTGGCCACCTGATTGTATTTCGAACTGTCGCACAGCAGG ATGCTTCTCGCGCTGACCTGGCTGACGGTCTCCTTGACGGTAACCTTGTTCTCATCAGGGGTGAATATCC CGCGACTGTCCCAGCCGCTGGCGGAGATAAAGGCCGTATCGATAGCCAGGTGGCGTAACGTACGCGCCGC CGATTCGCCCACGCAGGAGCGGTTCTCCCGGCACAGAGTGCCGCCGGTGTGGATCACGCCGCACTGGCTG GCATCGATCAGCAGCTGGGTTATCTCAAAATCATTGGTGACCACCTGGAGATCGTTCCGGTCGAGGATCG CCCGCGCCAGCGCCAGGGTGGTAGTCCCGGCATCCAGATAGATGCAACTGTTTTTAGCGATATGACTCGC CGCCAGCGCGCCGATCGCCTGTTTCTCCTCACTCTGCAGCGTGCTTTTCACCAGATGACTGGGTTCCGCG GCCAGCCGGCTGACGGCGCGTACGCCGCCCGAGACGCTGACCAGCAGCCCCTGCTCCTCCAGTTTACTGA CGTCCCGACGGATGGTCATATGGGACACGCCGAGGATCTCCGTCAGCTCGTTAATGCTTACCGCCCCACG CTGCTCCACCAGGGCTAAAATACGCTGATGTCGTTCTATTGGAATCACCGCTCTCCCCTTACCATTTTTT CACACCAGGCGTCACCACCCAGGCTACGGCCCTGGCGACACCCGGTGTTGTTATCGCGCTTTGCCGCTGT TTTTTACGCTATTTTAGGGCAAGAATCGCCGCTGTGCAGCCTCTTTCCGCCTGTGAATTTTTTATATTCA TGTGGGTTATTCGTGATAACTCTCACATAAATTCACATGATAACGCTTTATTCTATCATTAAATCACATT AATTAACTAATGTTCACAAGGAGACCAGCATGGCTGCACACACTAACGTCTGCGTGATTGGACTGGGTTC AATGGGCATGGGCGCCGCCCGCGCCTGCCTGCAGGCGGGCCTGAACACCTGGGGCGTTGACATCAATCCC GACAACTGTCGCGCACTGCTGGCGGCGGGCGCCAAAGGCGCGGGCCCCAGCGCGGTGCCGTTCGCCGCGG AACTGGATGCAGTTGTGCTGCTGGTGGTCAATGCCGCCCAGGTGCGGGGGATCCTGTTCGGCGAGAGCGG CCTCGCCGCCCATCTGAAGCCGGGCACCGTCGTGATGGTGTCGTCCACCATCGCCTCCGCCGATGCTCAG GCCATTGCCGAGGCGCTGGCGGAGTACCAGCTATTGATGCTCGACGCGCCGGTATCGGGCGGCGCCGTGA AAGCGGCCGCCGGCGACATGACGGTGATGGCCTCCGGGAGCGATGCCGCCTTTGCCCGACTCGCGCCGGT GCTGGACGCCGTGGCCGGCAAAGTCTACCGCATCGGGAGCGACATTGGTCTTGGCTCGACGGTAAAAATT ATCCATCAGCTGCTGGCCGGGGTGCACATCGCCGTTGCCGCCGAAGCGATGGCGCTTGCCGCCCGCGCCG GGATCCCACTGGAGACGATGTATGACGTGGTCACCCACGCGGCGGGTAATTCCTGGATGTTTGAGAATCG CATGCAGCACGTCCTGGATGGCGATTACTCGCCAAAATCCGCTGTCGATATTTTTGTCAAAGATCTCGGG CTGGTGAATGACACTGCCCGGGCGCTGACCTTCCCGCTGCCGCTCGCTACCACCGCGCTGAATATGTTCA CCTCCGCCAGTAATGCCGGATTCGGTCGGGAAGATGACAGCGCGGTGATCAAGATTTTCAACGGCATCAC CCTGCCGGGCCATAAACAGTGAGGAGAGACAACATGCAGCTTGGTGTCATTGCCGATGACTTCACCGGCG CCACGGATATTGCCAGCTTCCTCGTGCGCAACGGCATGCCGACGGTGCAACTGAATGGCGTGCCGACCCG CGATATTCCGCTGACCAGCGAGGCGGTGGTCATCAGCCTGAAAACCCGCTCCTGCCCGGCGGAAATGGCC GTCAGCCAGTCGCTGGCGGCCCTGCGCTGGCTGCAGGCCCAGGGCTGTCAGCAGTTTTATTTCAAGTACT GTTCCACTTTCGACAGCACCGCGCAGGGCAACATTGGCCCGGTGCTGGATGCCCTGCTGGCCGAGCTGGG TGAGACGCGGACGGTGATTTCCCCGGCGCTGCCGGTTAACGGCCGCACGGTCTATCAGGGATATCTGTTC GTCGGCGAGCAACTGCTGAATGAGTCCGGGATGCGCCACCATCCGGTGACGCCGATGGAGGATGCGCACC TGGGCCGCTTAATTGAGCGCCAAGGGCGCGGAAAAGCCGCGCTGATTGCCTGGCCGATTGTCGCCCGGTC GCCGCCGCGCTGGCGGCAGTCAACGATCCGGCGGTGCGCTATGTGGTGCTCGACGCCCTCAGCGAACAGG ATCTGCTCACCCAGGGCGTGGCGCTGCGGGAGATGAAGCTGGTCTCCGGCGGTTCCGGCCTCGCCATCGG CCTCGCCCGCGACTGGGCGCAGCGCCATGGCGCCAGGGGGGAAAGCGCTCAGGCCGGCATGCCGCTGGCC GGTCCGGCGGTGGTGCTCTCGGGCTCCTGCTCGGTGATGACCAACAGCCAGGTGGCGGCCTATCGTCAAC AGGCCCCCGCCCGCGCCGTCGACTTAAGCGCCTGCTTTACCGATCTGGAGAGCTACGTCAGGACGCTGAC TGACTGGGTGGACGCGCAGCGCGATGCGCCGCTGGCGCCGATGATCTATGCCACCACCGAGCCGCAAACG CTGCAGCGGATCCAGGCGCAGTATGGCGACAAGGCCAGCAGCGAACGGGTGGAACAGCTGTTTGCCGCTC TTGCCGCCGCCCTGAAGGCGAACGGATTTACCCGCTTTATTGTGGCCGGAGGGGAAACGTCGAGCATTGT GGCGCAGACCCTGGGGGTTGAGGCGTTCCATATTGGGGTTCTAGGGATTTTCCGTCCAAAAACGACAAAG TGCTCTGGAGGCCGCGCCGTCCGTGGCCTCCAGAGGGGTATTACTTTTCGCTGACGGGTAAATATCCCTC GATTGAGCGCATAAGCTCCTCCAGATCTGGCAATTTTTCGCTCAATTCGAAGTGGTAAGTCCCCTTGAGG TTAATGTTGTGCCAGGCCACAGGGGATGCCTGTTTGACGATATCTATTCTCTTGGTATCTCCTTGGTATT CGAAGCTGGTCAACAGCTGGCTGAGTATCCTGGAGTTGAAGTAAACGATGGCATTGGTGACCAGGCGAGC GCACTCATTCCATAGCTGGATTTCTTCGTCTGAACTGCCCCGGAACTGATCCCCATTGACGCTGCTCACG GCCCGACGCAGTTGGTGATAGGCCTCTCCCCGGTTCAGCGCGCGCTGAACATAGTTTCTTAAACTGGCAT CATCGATGTAGCACAGTAGATAATTCGCTTTCACCAGGCGATTGTATTCCGTCAGGGCTTCCAGCAGCGG GTGATTGCGCTTGTACTCCGAGAGCTTTCTCACCAAGGTGGCTTGCGTTGTTTTCCGCTGCTTAAGTGAT ACTGCAATCCGTTGGATGGTATCCCAGTGCTGCGCAATACGATGGGTATTGATTGGCTTTTTTAAGCACA GCTGAATTCGGTGTTCTTTGTCTTCCTTGACATCAAACATGTCATTGATCACTTTGCCAACCTGGGCATA GCGTGGGGCAAACTGGTATCCGAACAGATCCAGTAACGCGAAGTTCACATGGTTCACCCCATGGGTATCG GTTGAGAGCACATCCGGAATGATGTCTGACGTATTGCTCATCAACAAATCAAAGATGTAGTGCGATTCAT GTTCGTTGGCGCCGATCACTCTGGCGTTGATCGCAGCGTGATTGGCGATCAAGGTCATGGCAGAAACACC TTTTTGAGTGCCAAAGTACTTCGACGAATAACGGGTTTTGAAGGTCTCGCGCCGGGCTTCGAACTTTTGA CCATCGGCACTGGCGTGGATCACATCTTCCTGGATGTTGTAGTACCGGAAGATGGGTAGCTTGGCTGTCG CGTTATTGATGTTGTCGTTAGCAGCATTCAATGTTTCCAGGCGAAGATAGTTCGCCTGGATAGTGCTGAG CTGATCATAGGTACGATCAGAGATCTGTGCCATGCCGTAAATGCCTTGATTGGTTGCATTGCCGACCAGA ATTGCCAACAGGTCATATTCATGGGAACGGCTTCTGGATTGGGAACCCAGCACATGAGCGAAGCAGTCAA TGAAACCGGTGTCACGATCAACCATGCGCAGTACATCCGCAATCCCCGTTGTGGGAATTTGCTGGAAGAA GGGATTGTTGACCAGATGATGTTTGCTGGCCGAAGGCAGGCGCCAGAAGCGTTTACCCTGCGGATTACGC AAGATGATATTCCGGTTGTCTTCCTGTTCAAGATATTCGCCGACTTCGTACAAACGGGTATCCAATTCCA TGGCCATCTGTTTGATCAGCTTTTCAGGCTCCTCCGCTAATTTTGTAAAATGGCTCTGTTGAAGCAGCGT ATATTTGTTTTTTCGCCAATGTTCCCCGTCGATCAGGTCGGCGTCGAGTGCCCGGTATTTAGTGATATCA GGCAGCGTCAGCTGGCCATTCAGGCGATCAGGAATCTGTTGATAGAGGAACCACTCATAACGATCGATCA GGATATTCCCTTCACCATCCAGCAGGAATTCACGTGATTTTTTGGAAAGGAGTCTGGTGTCGGCAGTTTG CAACTGAGCGTCCTGGCCGTTGAGTTCGTTTTGTGTTTTCGCCAAGGCGGCCGCTAAGTGCTGGGTGCCG TCGCAGCCTTCGAAGCGCAGACATAGGAACAACTCTCGCAGCAAACCTTTCCGCAGACTTTCTTTCTCGT CGCAGTACTGCCACATGGCTTCATCGACCGATCGTCGCTGCTCGTTCAGGAAGAGACATACAGATTCCAG ATCCCTTTTGGTCAGCAGGCTCAGTGCTTGCTGTCTTACTGTTGCAAACGGTAGTTGCAGATCAATGCTG TCATCAATGAACAGGTGCAGTACTTCAGCTGCCTTGCTGACATTTTTAGCTGCTTTTTGCCAATCCTTAA ACACCGCTTCCTGCGCATAATCCTTTGCCTTCTGTTTGGTCTGTCTGACATGATGCACAAAGCCATCGGC AATACGTTCCAGCGCTTGCTGCCATCGCGTTTGAAGATAGCACAATAAATACAGCCATTGGCTGCCTACG GTTTGACGTTTCAGTTTGGCACCGTAGTAGTCGACTTTCTCTGCCAGGTGTTGCAGATTTTTCTGCGACA GTGATAGCGTGCTCAACAGCAGATCCACTTCCGGCATCCAATGCTGGATATGGCGATAGACAATCAGTTC TTTCTCCAACTCGGTTCCGGTGAAGTTACGAGCCGATTGTCGCAACTGTCGGAACGGCAGTGGACCTGTG CCGTTCACGAGCTCCGCCAGTGCTTGCTTAAGACCGCGTGACATTGCACGCTCAAGGTGCGCGGCCATGT GTTCCTGTTCGTCTCCCACCACCTGACTGATGATCTTTTGCAGCGTGCTGTAGGCAGGGATTGCGATCTT CTGCCCCGAACAATATTCATTGGCCGCATCGAAGAGGTGCCTAGGCGCTGTCCAGGCTCTGGCTTGCTGG GATAAGTAATCTCTCAACGCCGCTCCATGGTCTTTGACATTCCAGCGCTGGTAGTTGCAGAGCTGGAAAA CACGTTGGTAAATCCGTTCGTTCTCTTTTGGCGTGAGATTAAAGGGTCTACAGCCTGGGCCTGGTAGAAC GGTTTGATAAACGTATTTGAGGTCCTGCTTGATCTGATGAAAGCCGGGATTCAGCACCACCGGCTTGGCT TTGAAATAGCCCAGCAGTACCACCAGCATGTAACGCTGGCCCCGATGACGGAGGCTTTTAGCGATCGCCA GTTCCTTATCGTTCAGCGAGAAAAAGAAGCGTTGGTCGGCGGAGGTGAAAGCGGGGGGTCCATATAACTC ATCTTGTTCTGCCTCGGACAAGATTTGGACACGTTCTTCGAATGCCATGGATTTAGCCCAAAAAGACTAA ATCTTACTCAAACAGAGCCCAAATAGGGATCTCGAAAAAAGTAATACCCCTCTGGAGGCCACAGACGGCG GGGCCTCCAGAGCACTTTGTCGTTTTTGGACGGAAAATCCCTAGAACCCCTCAGTGGGACGAAATGATCC GGACCGCTGGCTCCCTGAAGCTGGGCAAAGTACAGGTTTCAGTGCTGGTCCGTTCATTGCTGAAAAGTGA ACGTCCTTCCGGACTGACTCAGGCAATCATTGAAGTGGGGCGCATCAACAAAACGCTGTATCTGCTTAAT TATATTGATGATGAAGATTACCGCCGGCGCATTCTGACCCAGCTTAATCGGGGAGAAAGTCGCCATGCCG TTGCCAGAGCCATCTGTCACGGTCAAAAAGGTGAGATAAGAAAACGATATACCGACGGTCAGGAAGATCA ACTGGGCACACTGGGGCTGGTCACTAACGCCGTCGTGTTATGGAACACTATTTATATGCAGGCAGCCCTG GATCATCTCCGGGCGCAGGGTGAAACACTGAATGATGAAGATATCGCACGCCTCTCCCCGCTTTGCCACG GACATATCAATATGCTCGGCCATTATTCCTTCACGCTGGCAGAACTGGTGACCAAAGGACATCTGAGACC ATTAAAAGAGGCGTCAGAGGCAGAAAACGTTGCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCC TGTTACCGATGCAAGAACAGGGGAGTTTCATGAAATGCCTGTTTAGGAGTGATTAAAGGTAACTTGTGCG CAGAAGGTCAGGTGTGTGGTGGTTAGTACAGACTAGTGAATGTTGTAACTAAACTATATTTTTATTAAAG GCCGGAGGTGGTGTTCCTCCGGCCTTAATTACGTTTCCGTGTTCATTAGTCGATGAACTGGCGGATCAGT TCCAGAATGGCAATCAGCGCGTTTGCAAGCGCCGCTACCGCCCTCAGAACGATGATTAACAGGTTAATCA TCCGTTTTCTCCATAAATGGAGTAAAGACACCGTGGCTTGCTCTTACACTGCCTGTCACCACGGCTTCTC TTCGTCTTGTCAGTTGTAGAGAGTCTCACTCCTGCCAGAGCACAGATAACCAGCACCACCTGTATTACCT GTCAGGACTTTGAACCTGTTCATGCCGCATTTAGCGGAATGCAGGGAGAGACTCACCACAGAGCTAACCC TCTGATTATACGTTTATCTAACGTTCAGGCAAACCGTTAACGCACAGTCACTGCCCGTCATATTGCATAA TCAGGCTTCACGGATTATCATACTATTGTCAGTTGTAGAGAGTTTCCCTTCCGGGCTGAGTTACCAGCTC GCACCGGAACCGTAAAAAAGCCGACCTCACCAGTCGGTTTTTTTACGTCTGCGGTTTCCCGCTTCGTTTA AATCTATTTTAAATGAATAAATTGTTCTGCGGCAAACCCAACAACATAAGGACGTTAGGGTTGATGGTTG CCGAAATCGCGGTGCGTTACGTGAATTCTGAGGTTTTGCGAGGGGGATTGGGCGCGAGAATTTACGAGAG AGCGCCGGAACAATGCCGGGATCACAAACCATCACCCGTGAAAGAAATCTTCCGGCATTGCCCGGTCAGG TAGTATGACATTCATTGTCAACGGCCATCAATTTATAAGCTGCTTTGCACTTCATAAAAGATCACCACCA GGGCTGCTAAAACAGTACCGATAGCCAGCACGTTAAAAAGTACGTCCTTCATCTTTACGAACGACATACT GATTTGCGTCCTTTCCCTTTTGTCAGCCTTCTCTATCATCCAGCGTTGGTATGAATCACTGTTACTTTTT CTGTCCATGTTCCCCCCAATTCATCAATGAGCACCAGGCGGCCACCAGGCTTCTTGCCAACAAAGTAACG GCCTCGCGGCAGACGTTCGCCAGTCTTCAGCCGTTCGATCCAGTCCTGAAATGCAGGGCGCGGTTTATAG CTGTAGCGGCCAAAATCAGCTAAAGACTGCGTGACCATGACTGTTTGGCAGCCATGCTTTCTCATATCAC GAAACGTATTTTCCAGTGCAGCCAGTGTATTCATTTGCACGTTCTCTCTGCTTTTCCCATGAAGATATTA ACGACACTCAAAACTAACACCGTTGGCATGATCACGGCAGCATAGCCGACAGCAACGGCCTGATATATGG TCAATGAGTAGTCGGGCTGTTTATACAATACGACTGAAAAAATGCTCCCCAAACAAGCAAGCAGAGTTAA AAACAAGTAATCGACAAATCTGTTTTTATAGATAACCCATGCAACGATGCAGGGATATGACACCAGGCAC AGGATAATCGCATTTGTGGTATGCACGTTTCGCTCCTTGTTATTTAAGGGTTGTCAGCCAGATCAAACAG ATTGTTCAGGCTGGAACGGAATTGTTTTACCGATGATACCAGCTCCTGACTCCGCGCTTTTTCCTGCGCC AGTTCACGCCGTAGCTGCGCCATCTCGTCTCTGTTACGCTGAAGCTCAAGGATAGCCGTCATAAAGGTTT TGCTGGCTGATGCCTGTCCGGTCGCTTCCTGCGCCTTTTTAATGGCCTGATCTTCGTCGTCATTCGTTCT GATTGTGTAATGCCCCATGATACCCCTCTTTTGCTGTCATTTTTGCGCTGCCGGCGCGAACCCGGGAAGA AACTTTGCTGG
Region Details
| Region | 1 |
| Region Length | 17Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | transposase |
| Region Position | 24874-41964 |
| # tRNA | 0 |
| # Total Proteins | 11 |
| # Phage Hit Proteins | 7 |
| # Hypothetical Proteins | 2 |
| Phage + Hypothetical Protein % | 81.8% |
| # Bacterial Proteins | 2 |
| Attachment Site | yes |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Staphy_SPbeta_like_NC_029119(2) PHAGE_Entero_HK140_NC_019710(2) PHAGE_Salmon_SJ46_NC_031129(2) PHAGE_Synech_S_CAM9_NC_031922(1) PHAGE_Escher_HK639_NC_016158(1) PHAGE_Entero_P1_NC_005856(1) PHAGE_Deep_s_D6E_NC_019544(1) PHAGE_Clostr_phiCD146_NC_028958(1) PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(1) PHAGE_Burkho_KS14_NC_015273(1) PHAGE_Burkho_phiE12_2_NC_009236(1) PHAGE_Cyanop_P_RSM1_NC_021071(1) PHAGE_Vibrio_VP58.5_NC_027981(1) PHAGE_Sodali_phiSG1_NC_007902(1) PHAGE_Synech_S_SSM4_NC_020875(1) PHAGE_Staphy_SA1_NC_027991(1) PHAGE_Salmon_Fels_2_NC_010463(1) PHAGE_Cronob_phiES15_NC_018454(1) PHAGE_Entero_HK225_NC_019717(1) PHAGE_Escher_pro483_NC_028943(1) PHAGE_Clostr_vB_CpeS_CP51_NC_021325(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 18.18% |
| GC % | 50.07% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|CP020111.1| Klebsiella pneumoniae strain AR_0098 plasmid tig00000003, complete 43381, gc%: 46.84%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 13 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 24874..24885 | attL | 0.0 | Showinfo_outline |
| 2 | complement(28974..29636) | PHAGE_Sodali_phiSG1_NC_007902: ParA-like protein; AM477_30350; phage(gi89886027) | 9.55e-16 | Showinfo_outline |
| 3 | 30017..30679 | PHAGE_Clostr_vB_CpeS_CP51_NC_021325: putative resolvase; AM477_30355; phage(gi509140089) | 3.29e-15 | Showinfo_outline |
| 4 | 30766..31005 | PHAGE_Entero_HK140_NC_019710: hypothetical protein; AM477_30360; phage(gi428781966) | 1.16e-08 | Showinfo_outline |
| 5 | 31008..31364 | PHAGE_Entero_HK140_NC_019710: hypothetical protein; AM477_30365; phage(gi428781967) | 1.51e-24 | Showinfo_outline |
| 6 | 31333..31452 | AraC family transcriptional regulator; AM477_30370 | 0.0 | Showinfo_outline |
| 7 | complement(31398..32102) | PROPHAGE_Brucel_1330: transposase, putative; AM477_30375; phage(gi23502708) | 1.98e-53 | Showinfo_outline |
| 8 | 32093..32275 | hypothetical protein; AM477_30380 | 0.0 | Showinfo_outline |
| 9 | 32239..33099 | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AM477_30385; phage(gi100066) | 8.99e-59 | Showinfo_outline |
| 10 | complement(33120..33881) | DeoR family transcriptional regulator; AM477_30390 | 0.0 | Showinfo_outline |
| 11 | 33872..34105 | hypothetical protein; AM477_30395 | 0.0 | Showinfo_outline |
| 12 | 34143..35045 | PHAGE_Staphy_SA1_NC_027991: putative oxidoreductase; AM477_30400; phage(gi937456879) | 1.32e-10 | Showinfo_outline |
| 13 | 41964..41975 | attR | 0.0 | Showinfo_outline |
Sequence
>24874..24885
GCAAAAAACACT
Sequence
>complement(28974..29636)
KlebsiellapneumoniaeMGKILLVVSDKGGVGKSTYVANTGSMLVNKGKSVIILKTDKNHDLLSWNEKRTDNGLLTIPVHAAYGNVSNEIKRLSKLCEVLIVDCPGHDSQEFRSALTVSDIVVTLVKPSSDFESETLTSVTEKIRTAQKANAALEPWVLFTRINSAKPRHRKAAIDLDKLLRSDNIWIQPLKTRISELDVYESACNEGAGVHDVSRASSLSTAKAQIELVAQEIGIL
Sequence
>30017..30679
KlebsiellapneumoniaeMTQTVPKGFVRAYLRASTTEQDATRALDTINTFAIERGLSICNYYIENESGSKLERPELFRLLKDCQQNDILLVEDVDRLSRLVGEDWNTLKKMIRQKDIRVVAVNVPTTWLASGHNDFDSRMFSAINDMLLDMLAAVARRDYEQRRERQQQGIARAKREGKYKGRQVNQSRYDAINRLIASGSSWSQIQKVLGCSRATISKAVKQQTVNKMNHEPEGRE
Sequence
>30766..31005
KlebsiellapneumoniaeMPRHYEIDSAWRASIKREPNGRQTVTTEAFVSQLALINFHWSCRQANQWIETYVTVFKDISTQEGENRTFMLFNPNGGR
Sequence
>31008..31364
KlebsiellapneumoniaeMGFPSPATDYQENRLSLDQHCNTGAPGVFFFRSDTYSFREGIKPGALLIVDFGGTPVDGSLVLCVLEQEFRIMRLRLHPKRCLQELDKLDNFRAIPDDDEDGLEVRGVITHIVALLQS
Sequence
>31333..31452
KlebsiellapneumoniaeLRTLWHCCKVSDEAAFCLIQRPYISKTLLTRRISPRGSP
Sequence
>complement(31398..32102)
KlebsiellapneumoniaeMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Sequence
>32093..32275
KlebsiellapneumoniaeMGSCAAPSAKGDDKFITTDYLQQCQRRVILICRFFTRLYRPSLKDVLWLCVIFACVLSPC
Sequence
>32239..33099
KlebsiellapneumoniaeMRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASKRGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQIAGIGAALIEHWQR
Sequence
>complement(33120..33881)
KlebsiellapneumoniaeMIPIERHQRILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAAEPSHLVKSTLQSEEKQAIGALAASHIAKNSCIYLDAGTTTLALARAILDRNDLQVVTNDFEITQLLIDASQCGVIHTGGTLCRENRSCVGESAARTLRHLAIDTAFISASGWDSRGIFTPDENKVTVKETVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAASHIARHACEVLRAG
Sequence
>33872..34105
KlebsiellapneumoniaeMESPLSPYHFFTPGVTTQATALATPGVVIALCRCFLRYFRARIAAVQPLSACEFFIFMWVIRDNSHINSHDNALFYH
Sequence
>34143..35045
KlebsiellapneumoniaeMAAHTNVCVIGLGSMGMGAARACLQAGLNTWGVDINPDNCRALLAAGAKGAGPSAVPFAAELDAVVLLVVNAAQVRGILFGESGLAAHLKPGTVVMVSSTIASADAQAIAEALAEYQLLMLDAPVSGGAVKAAAGDMTVMASGSDAAFARLAPVLDAVAGKVYRIGSDIGLGSTVKIIHQLLAGVHIAVAAEAMALAARAGIPLETMYDVVTHAAGNSWMFENRMQHVLDGDYSPKSAVDIFVKDLGLVNDTARALTFPLPLATTALNMFTSASNAGFGREDDSAVIKIFNGITLPGHKQ
Sequence
>41964..41975
GCAAAAAACACT
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 43381 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: attL (Region 1)
Locus: attLORF Start: 24874
ORF Stop: 24885
Strand: Forward
Protein Sequence: GCAAAAAACACT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 2: AM477_30350 (Region 1)
Locus: AM477_30350ORF Start: 28974
ORF Stop: 29636
Strand: Backward
Protein Sequence: MGKILLVVSDKGGVGKSTYVANTGSMLVNKGKSVIILKTDKNHDLLSWNEKRTDNGLLTIPVHAAYGNVSNEIKRLSKLCEVLIVDCPGHDSQEFRSALTVSDIVVTLVKPSSDFESETLTSVTEKIRTAQKANAALEPWVLFTRINSAKPRHRKAAIDLDKLLRSDNIWIQPLKTRISELDVYESACNEGAGVHDVSRASSLSTAKAQIELVAQEIGIL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM477_30350, ParA-like protein, phage(gi89886027), PHAGE_Sodali_phiSG1_NC_007902
Homolog/Ortholog E-Value: 9.55e-16
Locus 3: AM477_30355 (Region 1)
Locus: AM477_30355ORF Start: 30017
ORF Stop: 30679
Strand: Forward
Protein Sequence: MTQTVPKGFVRAYLRASTTEQDATRALDTINTFAIERGLSICNYYIENESGSKLERPELFRLLKDCQQNDILLVEDVDRLSRLVGEDWNTLKKMIRQKDIRVVAVNVPTTWLASGHNDFDSRMFSAINDMLLDMLAAVARRDYEQRRERQQQGIARAKREGKYKGRQVNQSRYDAINRLIASGSSWSQIQKVLGCSRATISKAVKQQTVNKMNHEPEGRE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM477_30355, putative resolvase, phage(gi509140089), PHAGE_Clostr_vB_CpeS_CP51_NC_021325
Homolog/Ortholog E-Value: 3.29e-15
Locus 4: AM477_30360 (Region 1)
Locus: AM477_30360ORF Start: 30766
ORF Stop: 31005
Strand: Forward
Protein Sequence: MPRHYEIDSAWRASIKREPNGRQTVTTEAFVSQLALINFHWSCRQANQWIETYVTVFKDISTQEGENRTFMLFNPNGGR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM477_30360, hypothetical protein, phage(gi428781966), PHAGE_Entero_HK140_NC_019710
Homolog/Ortholog E-Value: 1.16e-08
Locus 5: AM477_30365 (Region 1)
Locus: AM477_30365ORF Start: 31008
ORF Stop: 31364
Strand: Forward
Protein Sequence: MGFPSPATDYQENRLSLDQHCNTGAPGVFFFRSDTYSFREGIKPGALLIVDFGGTPVDGSLVLCVLEQEFRIMRLRLHPKRCLQELDKLDNFRAIPDDDEDGLEVRGVITHIVALLQS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM477_30365, hypothetical protein, phage(gi428781967), PHAGE_Entero_HK140_NC_019710
Homolog/Ortholog E-Value: 1.51e-24
Locus 6: AM477_30370 (Region 1)
Locus: AM477_30370ORF Start: 31333
ORF Stop: 31452
Strand: Forward
Protein Sequence: LRTLWHCCKVSDEAAFCLIQRPYISKTLLTRRISPRGSP
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AM477_30370, AraC family transcriptional regulator
Homolog/Ortholog E-Value: N/A
Locus 7: AM477_30375 (Region 1)
Locus: AM477_30375ORF Start: 31398
ORF Stop: 32102
Strand: Backward
Protein Sequence: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: AM477_30375, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 1.98e-53
Locus 8: AM477_30380 (Region 1)
Locus: AM477_30380ORF Start: 32093
ORF Stop: 32275
Strand: Forward
Protein Sequence: MGSCAAPSAKGDDKFITTDYLQQCQRRVILICRFFTRLYRPSLKDVLWLCVIFACVLSPC
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM477_30380, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 9: AM477_30385 (Region 1)
Locus: AM477_30385ORF Start: 32239
ORF Stop: 33099
Strand: Forward
Protein Sequence: MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASKRGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQIAGIGAALIEHWQR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM477_30385, hypothetical protein, phage(gi100066), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 8.99e-59
Locus 10: AM477_30390 (Region 1)
Locus: AM477_30390ORF Start: 33120
ORF Stop: 33881
Strand: Backward
Protein Sequence: MIPIERHQRILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAAEPSHLVKSTLQSEEKQAIGALAASHIAKNSCIYLDAGTTTLALARAILDRNDLQVVTNDFEITQLLIDASQCGVIHTGGTLCRENRSCVGESAARTLRHLAIDTAFISASGWDSRGIFTPDENKVTVKETVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAASHIARHACEVLRAG
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AM477_30390, DeoR family transcriptional regulator
Homolog/Ortholog E-Value: N/A
Locus 11: AM477_30395 (Region 1)
Locus: AM477_30395ORF Start: 33872
ORF Stop: 34105
Strand: Forward
Protein Sequence: MESPLSPYHFFTPGVTTQATALATPGVVIALCRCFLRYFRARIAAVQPLSACEFFIFMWVIRDNSHINSHDNALFYH
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AM477_30395, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 12: AM477_30400 (Region 1)
Locus: AM477_30400ORF Start: 34143
ORF Stop: 35045
Strand: Forward
Protein Sequence: MAAHTNVCVIGLGSMGMGAARACLQAGLNTWGVDINPDNCRALLAAGAKGAGPSAVPFAAELDAVVLLVVNAAQVRGILFGESGLAAHLKPGTVVMVSSTIASADAQAIAEALAEYQLLMLDAPVSGGAVKAAAGDMTVMASGSDAAFARLAPVLDAVAGKVYRIGSDIGLGSTVKIIHQLLAGVHIAVAAEAMALAARAGIPLETMYDVVTHAAGNSWMFENRMQHVLDGDYSPKSAVDIFVKDLGLVNDTARALTFPLPLATTALNMFTSASNAGFGREDDSAVIKIFNGITLPGHKQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AM477_30400, putative oxidoreductase, phage(gi937456879), PHAGE_Staphy_SA1_NC_027991
Homolog/Ortholog E-Value: 1.32e-10
Locus 13: attR (Region 1)
Locus: attRORF Start: 41964
ORF Stop: 41975
Strand: Forward
Protein Sequence: GCAAAAAACACT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download