Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1229081927 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1229081927.PHASTER.zip
gi|00000000|ref|CP022574.1| Klebsiella pneumoniae strain BIC-1 plasmid pBIC-1a, complete 170415, gc%: 52.73%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.5Kb | incomplete | 60 | 10 | 161752-170340 info_outline | PHAGE_Salmon_SJ46_NC_031129(3) | 50.60% | Show info_outline |
Region DNA
>1 161752-170340 TCATCGGGACATCTCCAGTGAAGGTTCGAGCATGACAGGTGGTTCAGCCGGAGTATTCGCTGGCTGAGTC GTAGAGCGGCCTGCATAGATGCGCTCAAGCTGCGCATCGGTGAGTTCCGAGGGCGCGGCATCGAAAACGA TCTGAGAATCGGCCAGCCCGACGACGCGATCGGCGAAGCGGCGGGCATATTCGAGTTGATGCAGCGAAAC GATGGCGGTGATGCCGTCTTCCTTGCAGATGTCGCGCAGCAATCCGAGAACACGGACCGAAGTGGCCGGG TCGAGACTGGCTACCGGCTCATCGGCCAGAATGATCGCCGGCTGTTGCGCTAGCGCACGCGCGATGCCTA CCCGCTGCTGCTGGCCACCGGACAGTTTGTCCACCCGGCTTAGCGCCTTGTCTGCCAGACCGACCCGAGC GAGGCAACTGAGCGCAATCTCCTGATCGGCACGCGGCAGAGGAAACAGCGAGCGGAGCGTGTTGTGAAAG GCCAGCCGACCGGTAAGCACATTAGCCAGTGCGCTTTGACGTTCGATTAGCTGGTGGTGCTGAAAGATCA TGGCGGTACGCCGACGATGCTGACGCAAGGCCGAGCCGCTGCCGAGCTCACCGAGTTCGCTGGTGACACT GCCGCCAGTGGGCGTGACGAGTCGATTGAGACTACGGAGCAAGGTCGACTTGCCTGCGCCCGAGAGACCA AGCAGCACGGTGAACTCACCACGCCGAAATGCAATCGAGGTATCGCGTAGGGCTGTCACGCCGCCTGGAT AGACGACGCTCAACCGGTCGACCCGCAGCACGGCGTCCTGTATTGGATGGGGCATCATTTGATCACCTTT TGCAATATTGCTGGCCGCACAATTGCGGTTCGCGATGCAAAGGATAGAAATTCCTTGTTAACGCACTGTT TCTAAAGGATGACATTTCGATGAATACTTCGAATCTGCCGTAGCGGGGCGGCAAGCGAAGCCGTGGAAGA ACGGGCGCAACGTAGCGTCTTTCTTCACGCGGGATACAGGAGGCTTTGATTGATACTGCTGCGGATTCGC TACAGTAACGTTGGGCCAGAACGTAATGCCATCCAAGCAAGAGAGCGCACACTAGGGAAACTCTGAAAAA GACTTTCTGATTTGGCAAAATACCGCGCCCCCACCCACCGAGTTTCCCGATGAAGCAGATGACCTTCGCC GACGCCGAGTACGCTGGCAAGCGCAAGCAAACCCGCAAGGAGTTGTTCCTGATCGAGATGGATCGGGTGG TGCCGTGGAAGGGCTTGATTGCTTTGATCGAGCCACATTATCCGAAGGGTGAAGGTGGCCGTCCGGCCTA CCCGTTGATGGCGATGCTGCGTGTGCATCTGCTGCAGAACTGGTTCGGCTACAGCGATCCAGCGATGGAG GAAGCGCTGTACGAAACCACGATCCTGCGCCAGTTTGCCGGGCTGAACCTGGAGCGCATCCCCGACGAAA CCACCATTTGTTGGCGCTGATGGAAAATTGACCCACCCTGCCGATTGAAATTTGACCCAGGGCGGATTGC TGATTTTGTTACCAGCAACTGTGGATAAGTCTACCAGCGCAGCTGCTGTTGCCCCCACTCCTTCGCTAGC CCAGTTCAGTTGTTTAAGACCGGCACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAG GCCTTACATTTCAAAAACTCTGCTTACCAGGCGCATTTCGCCCAGGGGATCACCATAATAAAATGCTGAG GCCTGGCCTTTGCGTAGTGCACGCATCACCTCAATACCTTTGATGGTGGCGTAAGCCGTCTTCATGGATT TAAATCCCAGCGTGGCGCCGATTATCCGTTTCAGTTTGCCATGATCGCATTCAATCACGTTGTTCCGGTA CTTAATCTGTCGGTGTTCAACGTCAGACGGGCACCGGCCTTCGCGTTTGAGCAGAGCAAGCGCGCGACCA TAGGCGGGCGCTTTATCCGTGTTGATGAATCGCGGGATCTGCCACTTCTTCACGTTGTTGAGGATTTTAC CCAGAAACCGGTATGCAGCTTTGCTGTTACGACGGGAGGAGAGATAAAAATCGACAGTGCGGCCCCGGCT GTCGACGGCCCGGTACAGATACGCCCAGCGGCCATTGACCTTCACGTAGGTTTCATCCATGTGCCACGGG CAAAGATCGGAAGGGTTACGCCAGTACCAGCGCAGCCGTTTTTCCATTTCAGGCGCATAACGCTGAACCC AGCGGTAAATCGTGGAGTGATCGACATTCACTCCGCGTTCAGCCAGCATCTCCTGCAGCTCACGGTAACT GATGCCGTATTTGCAGTACCAGCGTACGGCCCACCGAATGATGTCACGCTGAAAATGCCGGCCTTTGAAT GGGTTCATGTGCAGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGC CAAAACAATCACGTCAGACCTAAAGACAGAAAGTTGTTACTGACCACCATCCTGGCCGATGGTATCAACC TTGGACTGACAAAAATGGCCGAATCCTGTCCGGGAACGACCAAATCGTCACTCGAGGGCATTCAGGCCTG GTACATCAGGGATGAAACCTATTCAGCTGCGCTGGCCGAGTTGGTCAATGCCCAGAAAAAAAGCCCTCTG GCGGCATTCTGGGGCGATGGAACAACGTCATCGTCTGATGGACAGAACTTTCGGGTGGGGAGTCACGGGC GTTATGCTGGTCAGGTCAATCTTAAATACGGTCAGGATCCAAGCGTGCAGATTTATACGCATATTTCGGA CCAATACAGCCCGTTTTACACCAAAGTTATCAGCCGCGTGCGGGATTCAACACACGTACTTGATGGTCTG CTGTACCACGAAACTGATCTGGAAATTACAGAGCATTACACCGACACAGCAGGTTTCACTGAGCATGTTT TTGCGCTAATGCATCTGCTCGGATTCGCTTTTGCGCCAAGGATCCGGGATCTTCATGACAAACGGCTGTT TATTCATGGAAAAGCTGAGTTGTATCAGGGGCTTCAGTCAATCATCTCGACAACCAGCCTGAATCTAAAG GAAATTGAAACCCACTGGCATGAGGTGCTGCGTCTGGCAAGTTCTATAAAGCAGGGAACGGTAACAGCAT CACTGATGATGAAAAAGCTGGCAAGCTATCCGAAGCAGAATGGTCTGGCAAAGGCGCTGAGAGAGATTGG CCGCATCGAAAGGTCATTGTTTATGCTGGACTGGTTCAGGGATCCTTTACTGCGTCGACGCGTACAGGCG GGGCTGAATAAAGGTGAGGCTCGCAATGCCCTTGCGCGAGCGGTCTTTATGCATCGGCTGGGTGAAATCA GAGATCGGGGGCTGGAGAATCAGAGCTATCGAGCCAGCGGTCTGACGTTGCTGACTGCGGCGATCTCACT GTGGAATACGGTATATATAGAAAGAGCGATAGATTCTTTGAGACGAAAAGGGATCCCGATTAATGAGCAA CTGATTACCCATCTGTCACCACTGGGATGGGAACATATCAACCTGAGCGGGGATTACGTCTGGAGAACGA ACCTCAAACTGGGACAGGGTAAATACCGCGCATTACGCTCAGTGAATAGTAATATGTACAAAAAACAGGC TTAGCGTAGGATAATTTCCGTTTTCCAAGCGGACCCCATTTTCAGCGTGACATCATTCTGTGGGCCGTAC GCTGGTACTGCAAATACGGCATCAGTTACCGTGAGCTGCAGGAGATGCTGGCTGAACGCGGAGTGAATGT CGATCACTCCACGATTTACCGCTGGGTTCAGCGTTATGCGCCTGAAATGGAAAAACGGCTGCGCTGGTAC TGGCGTAACCCTTCCGATCTTTGCCCGTGGCACATGGATGAAACCTACGTGAAGGTCAATGGCCGCTGGG CGTATCTGTACCGGGCCGTCGACAGCCGGGGCCGCACTGTCGATTTTTATCTCTCCTCCCGTCGTAACAG CAAAGCTGCATACCGGTTTCTGGGTAAAATCCTCAACAACGTGAAGAAGTGGCAGATCCCGCGATTCATC AACACGGATAAAGCGCCCGCCTATGGTCGCGCGCTTGCTCTGCTCAAACGCGAAGGCCGGTGCCCGTCTG ACGTTGAACACCGACAGATTAAGTACCGGAACAACGTGATTGAATGCGATCATGGCAAACTGAAACGGAT AATCGGCGCCACGCTGGGATTTAAATCCATGAAGACGGCTTACGCCACCATCAAAGGTATTGAGGTGATG CGTGCACTACGCAAAGGCCAGGCCTCAGCATTTTATTATGGTGATCCCCTGGGCGAAATGCGCCTGGTAA GCAGAGTTTTTGAAATGTAAGGCCTTTGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTG CCAGGCAGGCTTATCTTGGACAAGAAGATCGCTTGGCCTCGCGCGCAGATCAGTTGGAAGAATTTGTTCA CTACGTGAAAGGCGAGATCACCAAGGTAGTCGGCAAATAATGTCTAAAACAAAGTTATGCACCTATTAAG CGCACAGCGGAGCAATGAAGGATACCTTGATGAAAAAAATTTTGCTGCTGCATATGTTGGTGTTCGTTTC CGCCACTCTCCCAATCAGTTCCGTGGCTTCTGATGAGGTTGAAACGCTTAAATGCACCATCATCGCAGAC GCCATTACCGGAAATACCTTATATGAGACCGGAGAATGTGCCCGTCGTGTGTCTCCGTGCTCGTCTTTTA AACTTCCATTGGCAATCATGGGGTTTGATAGTGGAATCTTGCAGTCGCCAAAATCACCTACGTGGGAATT GAAGCCGGAATACAACCCGTCTCCGAGAGATCGCACATACAAACAAGTCTATCCGGCGCTATGGCAAAGC GACTCTGTTGTCTAGTTCTCGCAGCAATTAACAAGCCGTCTGGGAGTTGATCGGTTCACGGAATACGTAA AGAAATTTGAGTACGGTAATCAAGATGTTTCCGGTGACTCGGGGAAGCATAACGGCTTGACCCAGTCATG GCTGATGTCGTCGCTCACCATATCTCCCAAGGAGCAAATTCAGTTTCTTCTACGCTTTGTCGCGCATAAG CTGCCTGTATCCGAAGCGGCTTATGACATGGCGTATGCCACAATCCCGCAGTACCAGGCAGCCGAAGGAT GGGCTGTACATGGAAAAAGCGGCAGCGGCTGGCTTCGGGACAATAACGGCAAGATAAATGAAAGTCGTCC GCAGGGCTGGTTCGTGGGCTGGGCTGAAAAAAACGGACGGCAAGTTGTTTTCGCCCGATTGGAAATAGGA AAGGAAAAGTCCGATATTCCCGGCGGGTCTAAAGCACGAGAGGATATTCTCGTGGAATTACCCGTGTTGA TGGGTAACAAATGATATGTGGCGTCATCGAGAGCAGATGCATAACCCTGCGCTCGAGCGGACCTCGCGCA TAAAGCCGCGCGAGTCCGCTCACCTTGAACGTTAGATGCACTAAGCACATAATTGCTCACAGCCAAACTA TCAGGTCAAGTCTGCTTTTATTATTTTTAAGCGTGCATAATAAGCCCTACACAAATTGGGAGATATATCA TGAAAAGAGTTTGATGCTCAGGGTGTAGCGGTTCGGTTTATTGACGACGGGATCAGTACCGACGGTGATA TGGGGCAAATGGTGGTCACCATCCTGTCGGCTGTGGCACAGGCTGAACGCCGGAGGATCCTAGAGCGCAC GAATGAGGGCCGACAGGAAGCAAAGCTGAAAGGAATCAAATTTGGCCGCAGGCGTACCGTGGACAGGAAC GTCGTGCTGACGCTTCATCAGAAGGGCACTGGTGCAACGGAAATTGCTCATCAGCTCAGTATTGCCCGCT CCACGGTTTATAAAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATG ATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTAT TTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTG AAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTT CCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGG GTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAAT GATGAGCACTTTTAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTGTTGACGCCGGGCAAGAGCAACTC GGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGG ATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCTGCCAACTTACT TCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGC CTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGCAG CAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAAT AGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATT GCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGC CCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGC TGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTACTCATATATACTTTAGATT GATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAA TCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCTTGTTGAGGATTTTACCCAGAAACCGGTA TGCAGCTTTGCTGTTACGACGGGAGGAGAGATAAAAATCGACAGTGCGGCCCCGGCTGTCGACGGCCCGG TACAGATACGCCCAGCGGCCATTGACCTTCACGTAGGTTTCATCCATGTGCCACGGGCAAAGATCGGAAG GGTTACGCCAGTACCAGCGCAGCCGTTTTTCCATTTCAGGCGCATAACGCTGAACCCAGCGGTAAATCGT GGAGTGATCGACATTCACTCCGCGTTCAGCCAGCATCTCCTGCAGCTCACGGTAACTGATGCCGTATTTG CAGTACCAGCGTACGGCCCACAGAATGATGTCACGCTGAAAATGCCGGCCTTTGAATGGGTTCATGTGCA GCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCCCTCTGATGTTAC ATTGCACAAGATAAAAATATATCATCATGAACAATAAAACTGTCTGCTTACATAAACAGTAATACAAGGG GTGTTATGAGCCATATTCAACGGGAAACGTCTTGCTCGAGGCCGCGATTAAATTCCAACATGGATGCTGA TTTATATGGGTATAAATGGGCTCGCGATAATGTCGGGCAATCAGGTGCGACAATCTATCGATTGTATGGG AAGCCCGATGCGCCAGAGTTGTTTCTGAAACATGGCAAAGGTAGCGTTGCCAATGATGTTACAGATGAGA TGGTCAGACTAAACTGGCTGACGGAATTTATGCCTCTTCCGACCATCAAGCATTTTATCCGTACTCCTGA TGATGCATGGTTACTCACCACTGCGATCCCCGGGAAAACAGCATTCCAGGTATTAGAAGAATATCCTGAT TCAGGTGAAAATATTGTTGATGCGCTGGCAGTGTTCCTGCGCCGGTTGCATTCGATTCCTGTTTGTAATT GTCCTTTTAACAGCGATCGCGTATTTCGTCTCGCTCAGGCGCAATCACGAATGAATAACGGTTTGGTTGA TGCGAGTGATTTTGATGACGAGCGTAATGGCTGGCCTGTTGAACAAGTCTGGAAAGAAATGCATAAGCTT TTGCCATTCTCACCGGATTCAGTCGTCACTCATGGTGATTTCTCACTTGATAACCTTATTTTTGACGAGG GGAAATTAATAGGTTGTATTGATGTTGGACGAGTCGGAATCGCAGACCGATACCAGGATCTTGCCATCCT ATGGAACTGCCTCGGTGAGTTTTCTCCTTCATTACAGAAACGGCTTTTTCAAAAATATGGTATTGATAAT CCTGATATGAATAAATTGCAGTTTCATTTGATGCTCGATGAGTTTTTCTAATCAGAATTGGTTAATTGGT TGTAACACTGGCAGAGCATTACGCTGACTTGACGGGACGGCGCTTCCCTACCCTCATGGCCGCCTCCCAG GAATCGACCCAGGTGCTTATCGTGGACATAATCCTTTACTCATAAATTG
Region Details
| Region | 1 |
| Region Length | 8.5Kb |
| Completeness(score) | incomplete(60) |
| Specific Keyword | transposase,head |
| Region Position | 161752-170340 |
| # tRNA | 0 |
| # Total Proteins | 10 |
| # Phage Hit Proteins | 8 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 80% |
| # Bacterial Proteins | 2 |
| Attachment Site | yes |
| # Phage Species | 4 |
| Most Common Phage Name(hit genes count) | PHAGE_Salmon_SJ46_NC_031129(3) PHAGE_Staphy_SPbeta_like_NC_029119(2) PHAGE_Salisa_1_NC_017983(1) PHAGE_Bacill_BMBtpLA_NC_028748(1) PHAGE_Plankt_PaV_LD_NC_016564(1) PHAGE_Erwini_ENT90_NC_019932(1) PHAGE_Sodali_phiSG1_NC_007902(1) PHAGE_Bacill_SPbeta_NC_001884(1) PHAGE_Bacill_G_NC_023719(1) |
| First Most Common Phage # | 3 |
| First Most Common Phage % | 30% |
| GC % | 50.60% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|CP022574.1| Klebsiella pneumoniae strain BIC-1 plasmid pBIC-1a, complete 170415, gc%: 52.73%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 14 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(161752..162579) | PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; CHX41_28280; phage(gi371496158) | 1.94e-26 | Showinfo_outline |
| 2 | 162921..163229 | PROPHAGE_Xantho_33913: IS1479 transposase; CHX41_28285; phage(gi21229605) | 1.38e-36 | Showinfo_outline |
| 3 | 163383..163458 | attL | 0.0 | Showinfo_outline |
| 4 | complement(163435..164139) | PROPHAGE_Brucel_1330: transposase, putative; CHX41_28290; phage(gi23502708) | 2.00e-52 | Showinfo_outline |
| 5 | 164110..164202 | replication protein RepA; CHX41_28295 | 0.0 | Showinfo_outline |
| 6 | 164202..165395 | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; CHX41_28300; phage(gi100060) | 4.46e-175 | Showinfo_outline |
| 7 | 165443..166111 | PROPHAGE_Brucel_1330: transposase, putative; CHX41_28305; phage(gi23502708) | 1.01e-48 | Showinfo_outline |
| 8 | 166150..166163 | attL | 0.0 | Showinfo_outline |
| 9 | 166331..167155 | class D beta-lactamase; CHX41_28310 | 0.0 | Showinfo_outline |
| 10 | 167355..167672 | PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; CHX41_28315; phage(gi100061) | 1.13e-08 | Showinfo_outline |
| 11 | 167855..168715 | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; CHX41_28320; phage(gi100066) | 5.20e-57 | Showinfo_outline |
| 12 | complement(168865..169236) | PROPHAGE_Brucel_1330: transposase, putative; CHX41_28325; phage(gi23502708) | 9.16e-38 | Showinfo_outline |
| 13 | 169286..169299 | attR | 0.0 | Showinfo_outline |
| 14 | 170340..170415 | attR | 0.0 | Showinfo_outline |
Sequence
>complement(161752..162579)
[Klebsiellapneumoniae]
Sequence
>162921..163229
[Klebsiellapneumoniae]
Sequence
>163383..163458
GGCACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCCTTACATTTCAAAAACTCTGCTTAC
Sequence
>complement(163435..164139)
[Klebsiellapneumoniae]
Sequence
>164110..164202
[Klebsiellapneumoniae]
Sequence
>164202..165395
[Klebsiellapneumoniae]
Sequence
>165443..166111
[Klebsiellapneumoniae]
Sequence
>166150..166163
TTTGCAACAGTGCC
Sequence
>166331..167155
[Klebsiellapneumoniae]
Sequence
>167355..167672
[Klebsiellapneumoniae]
Sequence
>167855..168715
[Klebsiellapneumoniae]
Sequence
>complement(168865..169236)
[Klebsiellapneumoniae]
Sequence
>169286..169299
TTTGCAACAGTGCC
Sequence
>170340..170415
GGCACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCCTTACATTTCAAAAACTCTGCTTAC
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 170415 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: CHX41_28280 (Region 1)
Locus: CHX41_28280ORF Start: 161752
ORF Stop: 162579
Strand: Backward
Protein Sequence: MMPHPIQDAVLRVDRLSVVYPGGVTALRDTSIAFRRGEFTVLLGLSGAGKSTLLRSLNRLVTPTGGSVTSELGELGSGSALRQHRRRTAMIFQHHQLIERQSALANVLTGRLAFHNTLRSLFPLPRADQEIALSCLARVGLADKALSRVDKLSGGQQQRVGIARALAQQPAIILADEPVASLDPATSVRVLGLLRDICKEDGITAIVSLHQLEYARRFADRVVGLADSQIVFDAAPSELTDAQLERIYAGRSTTQPANTPAEPPVMLEPSLEMSR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: CHX41_28280, ABC transporter, phage(gi371496158), PHAGE_Plankt_PaV_LD_NC_016564
Homolog/Ortholog E-Value: 1.94e-26
Locus 2: CHX41_28285 (Region 1)
Locus: CHX41_28285ORF Start: 162921
ORF Stop: 163229
Strand: Forward
Protein Sequence: MKQMTFADAEYAGKRKQTRKELFLIEMDRVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRVHLLQNWFGYSDPAMEEALYETTILRQFAGLNLERIPDETTI
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: CHX41_28285, IS1479 transposase, phage(gi21229605), PROPHAGE_Xantho_33913
Homolog/Ortholog E-Value: 1.38e-36
Locus 3: attL (Region 1)
Locus: attLORF Start: 163383
ORF Stop: 163458
Strand: Forward
Protein Sequence: GGCACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCCTTACATTTCAAAAACTCTGCTTAC
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 4: CHX41_28290 (Region 1)
Locus: CHX41_28290ORF Start: 163435
ORF Stop: 164139
Strand: Backward
Protein Sequence: MNPFKGRHFQRDIIRWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: CHX41_28290, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 2.00e-52
Locus 5: CHX41_28295 (Region 1)
Locus: CHX41_28295ORF Start: 164110
ORF Stop: 164202
Strand: Forward
Protein Sequence: LKMPAFEWVHVQLHQQKGMISLSPPTICNSA
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: CHX41_28295, replication protein RepA
Homolog/Ortholog E-Value: N/A
Locus 6: CHX41_28300 (Region 1)
Locus: CHX41_28300ORF Start: 164202
ORF Stop: 165395
Strand: Forward
Protein Sequence: QNNHVRPKDRKLLLTTILADGINLGLTKMAESCPGTTKSSLEGIQAWYIRDETYSAALAELVNAQKKSPLAAFWGDGTTSSSDGQNFRVGSHGRYAGQVNLKYGQDPSVQIYTHISDQYSPFYTKVISRVRDSTHVLDGLLYHETDLEITEHYTDTAGFTEHVFALMHLLGFAFAPRIRDLHDKRLFIHGKAELYQGLQSIISTTSLNLKEIETHWHEVLRLASSIKQGTVTASLMMKKLASYPKQNGLAKALREIGRIERSLFMLDWFRDPLLRRRVQAGLNKGEARNALARAVFMHRLGEIRDRGLENQSYRASGLTLLTAAISLWNTVYIERAIDSLRRKGIPINEQLITHLSPLGWEHINLSGDYVWRTNLKLGQGKYRALRSVNSNMYKKQA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: CHX41_28300, hypothetical protein, phage(gi100060), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 4.46e-175
Locus 7: CHX41_28305 (Region 1)
Locus: CHX41_28305ORF Start: 165443
ORF Stop: 166111
Strand: Forward
Protein Sequence: MILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: CHX41_28305, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 1.01e-48
Locus 8: attL (Region 1)
Locus: attLORF Start: 166150
ORF Stop: 166163
Strand: Forward
Protein Sequence: TTTGCAACAGTGCC
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 9: CHX41_28310 (Region 1)
Locus: CHX41_28310ORF Start: 166331
ORF Stop: 167155
Strand: Forward
Protein Sequence: MKKILLLHMLVFVSATLPISSVASDEVETLKCTIIADAITGNTLYETGECARRVSPCSSFKLPLAIMGFDSGILQSPKSPTWELKPEYNPSPRDRTYKQVYPALWQSDSVVFSQQLTSRLGVDRFTEYVKKFEYGNQDVSGDSGKHNGLTQSWLMSSLTISPKEQIQFLLRFVAHKLPVSEAAYDMAYATIPQYQAAEGWAVHGKSGSGWLRDNNGKINESRPQGWFVGWAEKNGRQVVFARLEIGKEKSDIPGGSKAREDILVELPVLMGNK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: CHX41_28310, class D beta-lactamase
Homolog/Ortholog E-Value: N/A
Locus 10: CHX41_28315 (Region 1)
Locus: CHX41_28315ORF Start: 167355
ORF Stop: 167672
Strand: Forward
Protein Sequence: KEFDAQGVAVRFIDDGISTDGDMGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTGATEIAHQLSIARSTVYKILEDERAS
Homolog/Ortholog Species: Head protein
Homolog/Ortholog Protein: CHX41_28315, prohead core protein protease, phage(gi100061), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 1.13e-08
Locus 11: CHX41_28320 (Region 1)
Locus: CHX41_28320ORF Start: 167855
ORF Stop: 168715
Strand: Forward
Protein Sequence: MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: CHX41_28320, hypothetical protein, phage(gi100066), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 5.20e-57
Locus 12: CHX41_28325 (Region 1)
Locus: CHX41_28325ORF Start: 168865
ORF Stop: 169236
Strand: Backward
Protein Sequence: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILN
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: CHX41_28325, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 9.16e-38
Locus 13: attR (Region 1)
Locus: attRORF Start: 169286
ORF Stop: 169299
Strand: Forward
Protein Sequence: TTTGCAACAGTGCC
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Locus 14: attR (Region 1)
Locus: attRORF Start: 170340
ORF Stop: 170415
Strand: Forward
Protein Sequence: GGCACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCCTTACATTTCAAAAACTCTGCTTAC
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download