Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1279661114 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1279661114.PHASTER.zip
gi|00000000|ref|NZ_MRAF01000011.1| Pediococcus damnosus strain P58 plasmid pPD58_1 Plasmid1, whole 67761, gc%: 39.37%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.3Kb | incomplete | 50 | 9 | 54313-62619 info_outline | PHAGE_Staphy_SPbeta_like_NC_029119(2) | 39.30% | Show info_outline |
Region DNA
>1 54313-62619 ATGAAATTACAAAATCTCAAACTAGAAAATTTTAGACAATTTTATAATCCCCAAGAAATC GATTTTGCAGCCAACGATAAGAACGTCACGTTAATTATTGGTGTTAATGGTACTGGTAAA ACTGGTATTTTTAGGGCGATAATATTTGCCTTATATGGGGAACAAAGATTGCAGCAAGAT ACAACGGGAGAAAAAGTTCACTTAGTTAACTTTCAGAAATTAAGAGAGAATTCTGAAAAG CCTGTCATTGCCACTGTTACGTTACAATTTGAGTATGATAACAAGCAATACATTCTTGTT CGTAAGATTGCTGAATCAGAACAAAATGGCGAAATTCAAGAGATTTCACAGGACGCATCA TTAAGTCTTATTTCGGATGATGGTGAGACCAATGAAGTTATTCATGATGCAAACTCTGTA ACGGATTTTATTTCTCAAATTTTACCCGCTCGAGTTAGAAATTTCTTTTTCTTCGATGCT GAAAGATTACAGTTGCTGACGGATTTGTCTTCAAATTCTTCGTCAACAAATATCAAACAA GGTGTTCAAGATATTCTGCAGGTATCTAATCTTCAAAGATCCCTAAATATTCTAAAGAGA CTCCATGACACTGAAATGAGATCTATTTCTGCAGCATCAGGGGATCCTGAGATCGAACGG TTATCTCAGCAAATCGATAAGGATCAGTCTAGGGTTAATGAGATTCAAAAAGAAAATACG TATTATCAGCAAAAGGTTCAAGCGGCGCAAGCTGAAATTCAGAATGTGGAAAAACAATTA GCTGATAATAAACAGCTACAACAGGATAAAAAAGACGTTGATGCCCAAAAAAAGATTAAG GAGACCGCTGATAATGCGGTTGTTACTACCTTAAAAAACATGATTGGTGATATTGAACCA TGTAGTTCAATCTTAGCTCGAGATATGTTTCCCCAGATTATGCCACAGATAAAGGACATG CGGGAAGATCAACGAGATTTGTTTTCAAAACAAGTTTTAACTCAGTCACTTCAAAATGGT GTATGTATGTTGTGTGGAAATGACTTGGGTAATCACCCAGAAGCTGAACGACATATTAAT AAGTTATTAGAAAACTATCAGAGTTCAGAACTATCGGGTATTCTGGATCTGGTTGAACGT GCTAATGAGCGAATTAATGAGGATTTGCAAATATTACCTGATAAAATGAACAACAATTAT CAAAGTCTGGTTAAAAGTACGGAAGAAGCTGAAAAAGCCCAAGCTATTATTGACAGAAAA TCAGTTTCTTTGGACGCTAACATGGATATGGAACGTAACTTGGAGGAAAAGGAACATACA ACCCTTCCTGAACTACACGCTACGGTAAATGACAATAAAGCTAAAATTATTTCAAACGAA GATAAGCTTGAACAATTATCGGACCAAATTAATGAAAATCAAAAAAATCGGGAAGTCAAA CTTAATGAACAAAGCGAGTTGGCAATTCAGAGAAGCGTTGCCGATAAGACAATCTCAATT TTGAAAGAATTGCAGACCATTGTTTCAGAATATGACGATGAGGCAAGATCAGAGTTATCT CAGCAAGTCAAATACATGTTCAACCAACTTATTACTGAGCAAGATCAAAACTTAATCAAA GAAGTAAATATCTCAAAGAACTACGAAATGGAAATTCTTGGTGAAAATGGCATCAACTTA TTAAACGATATTTCTATGGGGCAAAGTCAGGTCCTCTCTCTTGCGTTCATTTTTGCATTA GCCAAACTGGCGTCCAAAGGTAGAGATGAAATCGACTTTCCATTATTCGTGGATACACCA TTTGCAAGACTTGATAGTCAAATTCGCGACCATATTGTTCAAAAGACCCCAGGCTTGTCA AGCCAATGGGTACTGTTATTAACAGATACAGAATTTACCAGTCGCGAGAAGACCAGTTTT ATTAAAAGCAATGGGGTTGGTTATGTATATAAGCTTCAAAAGGATTCGGATGGCCAAACC AGTATTCTAAAAAGTACTTTTGAAGATTAAGAGGAGGTATAACGCAAATGGCAGATATTG ATTTTTTAAATAGTGGTAATCAATTGTTTCAAACGGCAACCCAATATGAGGATGTTTATA ATGCCTTGGCAAACTCCTTGGGACTTCATAATCAAGATATTTTTATGATTGCTGTGTATC TTGGTGTTCGTTCAGGTAAAAAGGAAAGTGCTCGAAACTATCAAGGGAAAGAATTTCGTC CATCGTACTTGAGCAAGAAACAACAAGGGGTTCTCTACGGTTTAGCTTTTAGAGATAGAC TTTTTAAAAAGGAAGCTGACTTTAAAGACCCTGAGTTAATTAACGATGCAAAACTTTTAT TCAATGAATATGCCAATCAAGGAGCCATGATAATTAGAGACACAGTTCTTAATGGATTTG ATATAAGTCAAGTTGGAAAAAAGGAACAAAGTGAAGTTGCAAGATCAATTGTTCAATACT TGCTTAAGGAAAAGGATGCTACCCCTTTCTAGTTCTATTACAGCATTTGTTGATATTAGA AAGTAGGTCATTGAAAATAAATGGAACTCATTCATCGGAGGTTATCCTAAAATGACAGTA GAAACAAATGAATTAAATTTTGAAGATCAACTTATCCATTATTTGGTCAATATTGGTGGT ACCAAGCAATGGGAATATTTATCCGAAATTCAAACGACTGATCAACTTTGGGCAAATTTT AAGCACATTTTGGAAATTAATAACCCTGACAAGTTAACTCGTCCCTTATCTAAAACCGAA TTTGCACAAGTGGAAGAGGAGATCTCTAACCTTGACACACCATACCATGCAGGGCAGTTT CTGTATGGTTTGAACGGAAAATCACAAGTTGAAGTTGACTTGGATGACAACCATCATGTA TTCTTGACTGTTTTTGATCAAGATGAGATTGGGGCAGGAAATACAGTTTATCAAATTGTC AATCAAATTCAGCGAGAGCCAGTATTGGCGGGACGTAAATCCCGGCGTTTTGATACAACT TTGCTGGTTAACGGACTACCAATCATTCAAATAGAGGAAAAAGCTGATGGCGTTGATGCT AAAACTGGCTTAAATCAAATGCACCAGTATATTGCTGAACAGCAATATACTGGGTTCTAT TCTACATTACAAATTTTGGTAGCTATTGCGCCACATGATGTTAGGTACATGGCTAATACA ACGGATGATCAATTTAATACAGACTTTGCATTTCGTTGGCAACGAGAAAAGGACAATCGG CCGGTGTATGATTGGAAAGAGTTTTGTAACTCAATGCTTTCAATTCCGATGGCACATCAA ATTGGATGTAAGCTGATTCCTGAGACAACTTTTAAGAGAGCGTATAATGAATAAATCGTC TCTCAAAAGGAAGGAATTTTTACATGCCAACTCGTTACGACAAAGAATTCAAACAAAACA TCATCAACCTATATAAACAAGGCGAATCAGCCGCCCAACTGGCCAGAGAATATGGCATTG GCTATTCAACCGTTCATAAGTGGATCCAGGGCCAAGCCAAAACTCAATCCGGTAAATCGC CAGACGAAATCAAAGCGATGGAAAAGCGACTGGCTTCGCTGTCTGAGGAGAACGAAATCC TAAAAAAAGCCCTGGGCTTCCTTGCGCAGAAGTAACCAATATCTTTGATTACATTCACCA AGAAAGCCATCACCACCAGGTAACCAAGATGTGCCGAATCCTCGGTGTTTCCAGAGCTCA GTATTATCGTTATCGATCCCCCAAACCTTCAAAACGCCGGGCCGAAGATGCGGACTTGAA ACAACGGATTCTGCGGATCTTTGCGGAATTTAAGCAGCGATACGGTGTTATGAAGATCCA CCATGAATTGAATCTGGAACTTCAACCACTGCAGCTTCGGTGCAGTCCACGACGGATTTC CCGGCTCATGAAGGAACTGGATATCCACTCCGTTACCGTCAATAAGTGGAAAGCGGCTTC GGCTTCCAAAACCAAGGTTGAACAGCGTCCCAACTTGCTTAAGCAGGATTTCTCGACCAC TGGTTTAAATCAAAAATGGACCGCTGATATGACCTATATTCAAACGAAGCGTAATGGCTG GTGTTACTTATCAACCATCATGGATCTGCACTCAAGACGAATTATCGGCTATTCATTCTC AAAAAAGATGGATACTGATTTAGTCTTAAAGACCCTGGAAAGCGCGGTTAAAAATCGAAC CATTACTGGGGACCTGATTATCCACACAGACTTAGGATCACAGTACACCAGCGATGATTA CAACCAACGGTTAACAGAACTACATATCCGCCACTCTTACAGCCGTAATGGGTGTCCATA CGATAATGCACCAATGGAATCTTTTCATGCTTCCCTCAAAAAGGAATGTGTTTATCCAGT GCCGGTCTTTGAGAATTATGAAACTGCCGCTGCTGTCCTTTTTGAATATGTGCATGCTTT CTACAATAGGAAGAGAATTCATAGTTCACTGGGCTACCAGACCCCCTTACAAGTTGAAAT TGCAACACTTACGAGCCAAATGGCCGCCTGATTTAATGCTTTCCATGGTTCAAATAAGTT ATTAATCACGATTAATGATTTATTTGAGCTGTGGAAGGTAAACGCGGTTCTGAATGTCTC TTAAAACCTGTCTCAAATATTGACTTCAATCCAGATTTGACATTCGACAATGATGACACA ACTGATCAGAACTTCACGGTTCACTTGAAGCATCAAAACATTCAGTCTACAGAGGCCAAA ACCGTTACAGAAACTATTCATTATCAAGGCGCTGGTAATCAAACTCCTGCTGATAACACC GCTCAAGTGACCTTTACGCGTCAAGTCTCAACTGATACGGTTACAGGTGAAAAGACCTAT GGGTCTTGGTCAGCTGATCAAAGCTTTGCGGCAGTGACTAGCCCAGTTATTAAGGGTTAT ACGCCAGATCAAGCTGAAATTGGGGCACAAACTGTGAGTGGTGACGCTAGTGATCTTGAC TTCACGGTGATTTATACCAAGGATGCGCCAACAAAACCAGTTAATCCAAGTCAACCAACG ATGCCAGCAAAACCAGTTAACCCAAGTCAACCAACGACGCCAGCAAAACCAGTTAACCCA AGTCAACCAACGACGCCAGCAAAACCGGTTCAGGCTGGTCAAGCGGCGGCTACTAATTTT GTGGACCAACGGTTGCCTCAAACTGATGAAACTGATCAACAACACATGACGCTGAGTGGC TTATTACTATTAGCAATGAGTAGTGTGTTAGGACTCTTCGGAATGACTAAGCGGCAGCGC AAAGAATAGGATGATATTATATGCTAAATCATCGGCAAATTAAGAACCAGTTTGAGAGCT TAACAACCCTGCAAGCTATTCAGAATCAGGCATACCAGATGTTAGTGCAAGGACTGGCCA AAACTGACTTTTCAATGCGTGAGTGGGGAATATTAGTCTATCTTGAACAACATGGGCAAG CTACTGCTAGTGAATTATCTGATGCATTCACGGTCACGCGCACACTAATTTACAGGAATA CTTGGCGATTGATTCAAGATAATTTAATTCAATCACAAGTGAATCCAAATGATCGACGAA TTGTTTGGCTATCTTTGACTGTTAATGGCCAAGAAAGGGTCCAGGAAGGTGTTCGGCAAG TGCAAGCGAACTTAAAAGCTTTCAACCAGAGTCACAATCTGGAGAAGTTGGCTAAATATG TGGAAGCTTTGTCACAACAACTTGCTAGGATAAATTAAAGTTTTTTCAAGATAAGTCAAG ATGTACTAATGTAAATAAAGATCAGTCTGTTAAAATCTTTGGGTTTTGGCAGACCGATCT TTTGTTGAAGTGAAGAAAATTTAAACATTAAGATTATTTTAGTCTCGTGACAATAATCAT TTTGTATACCTAAGTAATTAATCGAGCATTGCAAGTGGCAAAGTTTCTCACCATTAAAAA AGCTTAGATATATTTAGATACAAATTTTTTGACGTTTTGAATATGTGATAATTAAAGTGT TTAAATGGAACGAACCAGGTCACAACTTAACAGTTGTGGCCTCTTTTTTGATACTGTATA ATTAAAGGGTTAGAACCGTGTCATTACTTAATGACATAAGTAAGGAGATAAAAAGATGAA ATATGGCTATGCGCGAGTCAGTACCACTGATCAAAAATTAGCAAATCAAATTGAGTTACT AAAATTGGCAGGAGCAGAAAAAATCTTTCAAGAAAAGTTTACCGGCACAACTACTGAACG ACCGGAGTTTCAAAAATTGTTGCGCGTTCTAAAAACAGGCGATACTTTGATTGTAACTAA GTTGGATCGGTTTGCACGGAACACGCGCGAGGCATTAGCCATTATCCAAGAGTTGTTTAA AGAAAATGTCAAAGTCAACATTTTGAATATGGGCTTAATTGACAATACGCCGACTGGCCA ATTAGTCTTTACAATATTTAGCGCCTTTGCGCAGTTTGAACGCGATATGATTGTCACGCG CACACAAGAAGGTAAATTGTATGCCAAGCAACATGATCCGTTGTTTCGGGAAGGGCGACC GAAAACGTATTCTGATGAACAGATCAGATTTGCTTATGAGTTGCGAAAACAAGGCATGAC TTATAAGATGATTGAACGAAAGACGGGGATTAGTAAACGCACGCAACAGCGAAGGTTTAA GTCGATTTAAAAATAGGTGTTTTAAGAATTGAATGTTTAATTAATCACGTACGACGGGGA TTGCCGCTTTATTAAACAGTTGTGAGAGAAATTTATTTAGGGATTTTAAGCATTATTTAT ACCTGTTGTGCTATTGAGGTTAGTTGTGATAAGGATTAATTTGTACTACAAAAGGCCTAC TCAATTGTTAGTTGAGCAGGCCTTTTGTGGGTATTTTGATTAGAGCTATTAACCCTATGC TAATTATAAGGCTTAGCTTTCAAATGGAACATACTATTATCCAAATTATGATTTGTTAAG GTGGTGTGAGAGCATAAAATATCTTGTGTAAATGCATAAAAGATTTCTGAATTGTATAGA AATAGGGAATGCCTTCCCTTATGATATTTAGTAACCACAGAAAACATCACAGGAGGCATT CCCCATGAATGAACTTACCACAGAAATTATCGCTGCACTAGCCCAAAAGCAAGATTTGGA CAAAGTTTTTCGTCACCACCTCGAAATTGCGATTAACCAGCTGCTTCAAACCGAATTGGC AGAGTTTTTGGGTTACGAACGCTACTCATACGCTGGGATTAACACTGGTAATAACCGCAA CGACAGTTATGAGCGCTCGTTTGATACGAAGTACGGCCAACTTAACTTAACCATTCCTCG AGATCGCAATGGCCGGTTTGAAAATTATACCTTGCCAGCCTACGGTCGGCACAGTGATAA TTTAGAAACAACGGTCATTCAGTTGTATACCAAGGGAATTACCACTGCTGAAATTGCCGA ACTCATTGAGAAAATGTACGGTGCTCACTACTCCAAAGCCACGGTTTCCAACATGACTAA AGCCGTCAATGAACAGGTTCAAGCTTTCCAGCAACGTCGACTGGCTTCACAATATGCGGC CATCTTCTTAGATGCCACTTACTTGCCGTTAAAGCGGGATACCGTTCAAAAAGAAGCCGT TCATATTGCGATTGGCATTCGTCCAGATGGTACGAAAGAAGTGCTGAACTACCAAGTGGC GCCCAACGGAATCGACTGGAATCTGGACTGAACTGCTGGGAACCTTGATCAAGCAGGGCG TTAAAGATGTGCTGTTGTTTGTGGCCGATGGGTTAGTTGGTTTGGATGAAGGCTTGAATC GGCATTTCCCTAAAGCCAAACGACAACGTTGCCTGGTTCATGTTGGGCGGAATCTGATGA ACAAAGTTCGCGTAAAAGACCGCAAGGCCGTGATCAGTGACTTTAAACAAGTTCATCGGG CCGCCAACCGTGAAGCAGCCGAACTGAAACTGAATGAGTTCGCCAACAACTGGCATCAGA CCTATCCCAAATTAATCAAAGATCTGCTTAAAATGCCGAATTTACTCACTTTCATGGACT TTCCACCAGCTATCCGGCAATCACTATACTCCACTAACCTGATTGAGAACTTTAATAAGC ATCTCAAGCGCACCACCCACCACAAAGAACAATTTCCAACGGAAGATTCACTGGATCGCT TCCTGGTTTCTCAGTTTAATGTTTANNNNNNNNNNCACACACTTAATTAATTAAGTGTGT GNNNNNNNNNNTAACGAGAAGTCTCTGAAGCGGATCCACCGAGGGTTCAAAGGACTCCAG GACACCTTGGAAGCATCATTTATTTAA
Region Details
| Region | 1 |
| Region Length | 8.3Kb |
| Completeness(score) | incomplete(50) |
| Specific Keyword | transposase,recombinase |
| Region Position | 54313-62619 |
| # tRNA | 0 |
| # Total Proteins | 9 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 1 |
| Phage + Hypothetical Protein % | 77.7% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Staphy_SPbeta_like_NC_029119(2) PHAGE_Lactob_phiAT3_NC_005893(2) PHAGE_Shigel_Sf6_NC_005344(1) PHAGE_Bacter_Diva_NC_028788(1) PHAGE_Lactob_LP65_NC_006565(1) PHAGE_Clostr_phiCD38_2_NC_015568(1) PHAGE_Shigel_SfII_NC_021857(1) PHAGE_Staphy_SA11_NC_019511(1) PHAGE_Staphy_vB_SauM_Remus_NC_022090(1) PHAGE_Clostr_phiCD111_NC_028905(1) PHAGE_Staphy_vB_SauM_Romulus_NC_020877(1) PHAGE_Paenib_Vegas_NC_028767(1) PHAGE_Salmon_SJ46_NC_031129(1) PHAGE_Paenib_Shelly_NC_041909(1) PHAGE_Escher_pro483_NC_028943(1) PHAGE_Acinet_ZZ1_NC_018087(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 22.22% |
| GC % | 39.30% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NZ_MRAF01000011.1| Pediococcus damnosus strain P58 plasmid pPD58_1 Plasmid1, whole 67761, gc%: 39.37%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 9 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 54313..56322 | PHAGE_Lactob_LP65_NC_006565: hypothetical protein; BSQ36_RS10600; phage(gi56693118) | 7.99e-06 | Showinfo_outline |
| 2 | 56340..56804 | hypothetical protein; BSQ36_RS10605 | 0.0 | Showinfo_outline |
| 3 | 56884..57666 | type I restriction endonuclease subunit R; BSQ36_RS10610 | 0.0 | Showinfo_outline |
| 4 | 57696..57947 | PHAGE_Lactob_phiAT3_NC_005893: putative transposase A; BSQ36_RS10615; phage(gi48697273) | 3.22e-53 | Showinfo_outline |
| 5 | 58001..58843 | PHAGE_Lactob_phiAT3_NC_005893: putative transposase OrfB; BSQ36_RS10620; phage(gi48697274) | 0.0 | Showinfo_outline |
| 6 | 58951..59601 | PHAGE_Staphy_vB_SauM_Remus_NC_022090: hypothetical protein; BSQ36_RS10625; phage(gi530787455) | 2.57e-06 | Showinfo_outline |
| 7 | 59613..60050 | MarR family transcriptional regulator; BSQ36_RS10630 | 0.0 | Showinfo_outline |
| 8 | 60428..60982 | PHAGE_Clostr_phiCD38_2_NC_015568: recombinase/resolvase; BSQ36_RS10635; phage(gi333798162) | 4.52e-44 | Showinfo_outline |
| 9 | 61397..62619 | PHAGE_Staphy_SPbeta_like_NC_029119: transposase mutator family; BSQ36_RS10645; phage(gi985761243) | 3.93e-23 | Showinfo_outline |
Sequence
>54313..56322
PediococcusdamnosusMKLQNLKLENFRQFYNPQEIDFAANDKNVTLIIGVNGTGKTGIFRAIIFALYGEQRLQQDTTGEKVHLVNFQKLRENSEKPVIATVTLQFEYDNKQYILVRKIAESEQNGEIQEISQDASLSLISDDGETNEVIHDANSVTDFISQILPARVRNFFFFDAERLQLLTDLSSNSSSTNIKQGVQDILQVSNLQRSLNILKRLHDTEMRSISAASGDPEIERLSQQIDKDQSRVNEIQKENTYYQQKVQAAQAEIQNVEKQLADNKQLQQDKKDVDAQKKIKETADNAVVTTLKNMIGDIEPCSSILARDMFPQIMPQIKDMREDQRDLFSKQVLTQSLQNGVCMLCGNDLGNHPEAERHINKLLENYQSSELSGILDLVERANERINEDLQILPDKMNNNYQSLVKSTEEAEKAQAIIDRKSVSLDANMDMERNLEEKEHTTLPELHATVNDNKAKIISNEDKLEQLSDQINENQKNREVKLNEQSELAIQRSVADKTISILKELQTIVSEYDDEARSELSQQVKYMFNQLITEQDQNLIKEVNISKNYEMEILGENGINLLNDISMGQSQVLSLAFIFALAKLASKGRDEIDFPLFVDTPFARLDSQIRDHIVQKTPGLSSQWVLLLTDTEFTSREKTSFIKSNGVGYVYKLQKDSDGQTSILKSTFED
Sequence
>56340..56804
PediococcusdamnosusMADIDFLNSGNQLFQTATQYEDVYNALANSLGLHNQDIFMIAVYLGVRSGKKESARNYQGKEFRPSYLSKKQQGVLYGLAFRDRLFKKEADFKDPELINDAKLLFNEYANQGAMIIRDTVLNGFDISQVGKKEQSEVARSIVQYLLKEKDATPF
Sequence
>56884..57666
PediococcusdamnosusMTVETNELNFEDQLIHYLVNIGGTKQWEYLSEIQTTDQLWANFKHILEINNPDKLTRPLSKTEFAQVEEEISNLDTPYHAGQFLYGLNGKSQVEVDLDDNHHVFLTVFDQDEIGAGNTVYQIVNQIQREPVLAGRKSRRFDTTLLVNGLPIIQIEEKADGVDAKTGLNQMHQYIAEQQYTGFYSTLQILVAIAPHDVRYMANTTDDQFNTDFAFRWQREKDNRPVYDWKEFCNSMLSIPMAHQIGCKLIPETTFKRAYNE
Sequence
>57696..57947
PediococcusdamnosusMPTRYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLASLSEENEILKKALGFLAQK
Sequence
>58001..58843
PediococcusdamnosusMCRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRNGCPYDNAPMESFHASLKKECVYPVPVFENYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLTSQMAA
Sequence
>58951..59601
PediococcusdamnosusMDFNPDLTFDNDDTTDQNFTVHLKHQNIQSTEAKTVTETIHYQGAGNQTPADNTAQVTFTRQVSTDTVTGEKTYGSWSADQSFAAVTSPVIKGYTPDQAEIGAQTVSGDASDLDFTVIYTKDAPTKPVNPSQPTMPAKPVNPSQPTTPAKPVNPSQPTTPAKPVQAGQAAATNFVDQRLPQTDETDQQHMTLSGLLLLAMSSVLGLFGMTKRQRKE
Sequence
>59613..60050
PediococcusdamnosusMLNHRQIKNQFESLTTLQAIQNQAYQMLVQGLAKTDFSMREWGILVYLEQHGQATASELSDAFTVTRTLIYRNTWRLIQDNLIQSQVNPNDRRIVWLSLTVNGQERVQEGVRQVQANLKAFNQSHNLEKLAKYVEALSQQLARIN
Sequence
>60428..60982
PediococcusdamnosusMKYGYARVSTTDQKLANQIELLKLAGAEKIFQEKFTGTTTERPEFQKLLRVLKTGDTLIVTKLDRFARNTREALAIIQELFKENVKVNILNMGLIDNTPTGQLVFTIFSAFAQFERDMIVTRTQEGKLYAKQHDPLFREGRPKTYSDEQIRFAYELRKQGMTYKMIERKTGISKRTQQRRFKSI
Sequence
>61397..62619
PediococcusdamnosusMNELTTEIIAALAQKQDLDKVFRHHLEIAINQLLQTELAEFLGYERYSYAGINTGNNRNDSYERSFDTKYGQLNLTIPRDRNGRFENYTLPAYGRHSDNLETTVIQLYTKGITTAEIAELIEKMYGAHYSKATVSNMTKAVNEQVQAFQQRRLASQYAAIFLDATYLPLKRDTVQKEAVHIAIGIRPDGTKEVLNYQVAPNGIDWNLDTAGNLDQAGRRCAVVCGRWVSWFGRLESAFPSQTTTLPGSCWAESDEQSSRKRPQGRDQLTSSSGRQPSSRTETEVRQQLASDLSQINQRSANAEFTHFHGLSTSYPAITILHPDELASQAHHPPQRTISNGRFTGSLPGFSVCLXXXXHTLIKCVXXXXTRSLSGSTEGSKDSRTPWKHHLFAA
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 67761 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: BSQ36_RS10600 (Region 1)
Locus: BSQ36_RS10600ORF Start: 54313
ORF Stop: 56322
Strand: Forward
Protein Sequence: MKLQNLKLENFRQFYNPQEIDFAANDKNVTLIIGVNGTGKTGIFRAIIFALYGEQRLQQDTTGEKVHLVNFQKLRENSEKPVIATVTLQFEYDNKQYILVRKIAESEQNGEIQEISQDASLSLISDDGETNEVIHDANSVTDFISQILPARVRNFFFFDAERLQLLTDLSSNSSSTNIKQGVQDILQVSNLQRSLNILKRLHDTEMRSISAASGDPEIERLSQQIDKDQSRVNEIQKENTYYQQKVQAAQAEIQNVEKQLADNKQLQQDKKDVDAQKKIKETADNAVVTTLKNMIGDIEPCSSILARDMFPQIMPQIKDMREDQRDLFSKQVLTQSLQNGVCMLCGNDLGNHPEAERHINKLLENYQSSELSGILDLVERANERINEDLQILPDKMNNNYQSLVKSTEEAEKAQAIIDRKSVSLDANMDMERNLEEKEHTTLPELHATVNDNKAKIISNEDKLEQLSDQINENQKNREVKLNEQSELAIQRSVADKTISILKELQTIVSEYDDEARSELSQQVKYMFNQLITEQDQNLIKEVNISKNYEMEILGENGINLLNDISMGQSQVLSLAFIFALAKLASKGRDEIDFPLFVDTPFARLDSQIRDHIVQKTPGLSSQWVLLLTDTEFTSREKTSFIKSNGVGYVYKLQKDSDGQTSILKSTFED
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: BSQ36_RS10600, hypothetical protein, phage(gi56693118), PHAGE_Lactob_LP65_NC_006565
Homolog/Ortholog E-Value: 7.99e-06
Locus 2: BSQ36_RS10605 (Region 1)
Locus: BSQ36_RS10605ORF Start: 56340
ORF Stop: 56804
Strand: Forward
Protein Sequence: MADIDFLNSGNQLFQTATQYEDVYNALANSLGLHNQDIFMIAVYLGVRSGKKESARNYQGKEFRPSYLSKKQQGVLYGLAFRDRLFKKEADFKDPELINDAKLLFNEYANQGAMIIRDTVLNGFDISQVGKKEQSEVARSIVQYLLKEKDATPF
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: BSQ36_RS10605, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 3: BSQ36_RS10610 (Region 1)
Locus: BSQ36_RS10610ORF Start: 56884
ORF Stop: 57666
Strand: Forward
Protein Sequence: MTVETNELNFEDQLIHYLVNIGGTKQWEYLSEIQTTDQLWANFKHILEINNPDKLTRPLSKTEFAQVEEEISNLDTPYHAGQFLYGLNGKSQVEVDLDDNHHVFLTVFDQDEIGAGNTVYQIVNQIQREPVLAGRKSRRFDTTLLVNGLPIIQIEEKADGVDAKTGLNQMHQYIAEQQYTGFYSTLQILVAIAPHDVRYMANTTDDQFNTDFAFRWQREKDNRPVYDWKEFCNSMLSIPMAHQIGCKLIPETTFKRAYNE
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: BSQ36_RS10610, type I restriction endonuclease subunit R
Homolog/Ortholog E-Value: N/A
Locus 4: BSQ36_RS10615 (Region 1)
Locus: BSQ36_RS10615ORF Start: 57696
ORF Stop: 57947
Strand: Forward
Protein Sequence: MPTRYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLASLSEENEILKKALGFLAQK
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: BSQ36_RS10615, putative transposase A, phage(gi48697273), PHAGE_Lactob_phiAT3_NC_005893
Homolog/Ortholog E-Value: 3.22e-53
Locus 5: BSQ36_RS10620 (Region 1)
Locus: BSQ36_RS10620ORF Start: 58001
ORF Stop: 58843
Strand: Forward
Protein Sequence: MCRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQLRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRNGCPYDNAPMESFHASLKKECVYPVPVFENYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLTSQMAA
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: BSQ36_RS10620, putative transposase OrfB, phage(gi48697274), PHAGE_Lactob_phiAT3_NC_005893
Homolog/Ortholog E-Value: 0.0
Locus 6: BSQ36_RS10625 (Region 1)
Locus: BSQ36_RS10625ORF Start: 58951
ORF Stop: 59601
Strand: Forward
Protein Sequence: MDFNPDLTFDNDDTTDQNFTVHLKHQNIQSTEAKTVTETIHYQGAGNQTPADNTAQVTFTRQVSTDTVTGEKTYGSWSADQSFAAVTSPVIKGYTPDQAEIGAQTVSGDASDLDFTVIYTKDAPTKPVNPSQPTMPAKPVNPSQPTTPAKPVNPSQPTTPAKPVQAGQAAATNFVDQRLPQTDETDQQHMTLSGLLLLAMSSVLGLFGMTKRQRKE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: BSQ36_RS10625, hypothetical protein, phage(gi530787455), PHAGE_Staphy_vB_SauM_Remus_NC_022090
Homolog/Ortholog E-Value: 2.57e-06
Locus 7: BSQ36_RS10630 (Region 1)
Locus: BSQ36_RS10630ORF Start: 59613
ORF Stop: 60050
Strand: Forward
Protein Sequence: MLNHRQIKNQFESLTTLQAIQNQAYQMLVQGLAKTDFSMREWGILVYLEQHGQATASELSDAFTVTRTLIYRNTWRLIQDNLIQSQVNPNDRRIVWLSLTVNGQERVQEGVRQVQANLKAFNQSHNLEKLAKYVEALSQQLARIN
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: BSQ36_RS10630, MarR family transcriptional regulator
Homolog/Ortholog E-Value: N/A
Locus 8: BSQ36_RS10635 (Region 1)
Locus: BSQ36_RS10635ORF Start: 60428
ORF Stop: 60982
Strand: Forward
Protein Sequence: MKYGYARVSTTDQKLANQIELLKLAGAEKIFQEKFTGTTTERPEFQKLLRVLKTGDTLIVTKLDRFARNTREALAIIQELFKENVKVNILNMGLIDNTPTGQLVFTIFSAFAQFERDMIVTRTQEGKLYAKQHDPLFREGRPKTYSDEQIRFAYELRKQGMTYKMIERKTGISKRTQQRRFKSI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: BSQ36_RS10635, recombinase/resolvase, phage(gi333798162), PHAGE_Clostr_phiCD38_2_NC_015568
Homolog/Ortholog E-Value: 4.52e-44
Locus 9: BSQ36_RS10645 (Region 1)
Locus: BSQ36_RS10645ORF Start: 61397
ORF Stop: 62619
Strand: Forward
Protein Sequence: MNELTTEIIAALAQKQDLDKVFRHHLEIAINQLLQTELAEFLGYERYSYAGINTGNNRNDSYERSFDTKYGQLNLTIPRDRNGRFENYTLPAYGRHSDNLETTVIQLYTKGITTAEIAELIEKMYGAHYSKATVSNMTKAVNEQVQAFQQRRLASQYAAIFLDATYLPLKRDTVQKEAVHIAIGIRPDGTKEVLNYQVAPNGIDWNLDTAGNLDQAGRRCAVVCGRWVSWFGRLESAFPSQTTTLPGSCWAESDEQSSRKRPQGRDQLTSSSGRQPSSRTETEVRQQLASDLSQINQRSANAEFTHFHGLSTSYPAITILHPDELASQAHHPPQRTISNGRFTGSLPGFSVCLXXXXHTLIKCVXXXXTRSLSGSTEGSKDSRTPWKHHLFAA
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: BSQ36_RS10645, transposase mutator family, phage(gi985761243), PHAGE_Staphy_SPbeta_like_NC_029119
Homolog/Ortholog E-Value: 3.93e-23
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download