Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1334637308 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1334637308.PHASTER.zip
gi|00000000|ref|JASA01000027.1| Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM 111149, gc%: 51.27%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 7.4Kb | incomplete | 20 | 10 | 1-7483 info_outline | PHAGE_Burkho_KL3_NC_015266(2) | 45.57% | Show info_outline |
Region DNA
>1 1-7483 TTTATCTCAAAAAGTCTGGATAAATGGGCGTATGAACACGGCGTCACAATGGACTTCTCG CGCCCCGGAAAGCCGACAGATAACCCGTTTATTGAATCATTTAACGGCAGTCTGCGGGAT GAATGCCTGAACATTCACTGGTTCCTGTCACTGGAAGATGCGCAGGAAAAACTCGACAAC TGGCGCAGGGAATACAATCATGAGAGAACGCATTCATCATTAAATGACATGACTCCGGCT GAATTTATCCGAAGTCTCCGGAAAGACGAAGATCTCTGATTTAGCACTGTACTGAATTTG GGCCAGGGTCATCAGCATTAGCTTGGCCATTGGCTTTTGTATGGTTTGTTCAAAAATATG GTAATGACGTTAAAGAGCTAATTCTCCGGTTATCTAAAGTAAAATTTGGAAATGCTGAAG CTGAATTTACTTTAGGGTTAAAAGCCGCGGAAGATTTAGCTAATGAAGCTCCCTTGATTG AAGTCTCAAAAGATCTGCCTGAGGAAGGTATCGAGTTTTCTAAACGTATGTCGCAGTTAG AGCGCATTGCGGACGTATCGCCTAGGGCCGCAATTATGGAGTCATGGTTACTAATTGAAG AAGCGGCAGGAAAAGCAGGTTTTGTCCAGGGGGCATCAATTCCAAGAATTAATCCTTTAT TATTTATTGAATGGTTAGTAAGAGAAGGGAAAATTGATAAATCAACCGCTATCTTGGTAG ATAGGATGAGAAAGCTACGAAATGAAGCGAGTCATCTGAGAGATTTCGAACTCACAAAAG ATGAAGCTGAACGATATCTAAAAATAGCCGTTCAAATCTCTCTTCTTATCATCGAACCGG AGTCATCTGTAGTGTTAGAAAATGAGTAACAGTATGTATTAGATGCCTATATTCAAAGTT ATTAACCTATTAAGGTTGCTTTTGCTTACAACTTACACGACTGAATGGGGCGTGTGATGA CATCACGCAAATTTAAAGGAACTCTAGAAAATGCATCAATTCAATGAGCTTGCATATAGA TGTACATATTTTTCATTGAGGGTGATAAACGAGGCCTATGATGAAACGATGAATGAATTA TCAGAAACTGGCTCAACTCCTCTTGTTAAAATTTTACAGGCTCTGAAACTACAAAAGATG ATACATATAGTTGGATTGTTTTCAATTTTTGAAGCACACCTGCAACAAGGACTTGCATGT CGAAATGGTTTCAAAGAGGCAGCGTTGATTCTAGAACAAGCGGGTGAGTATGCTTTAAAA GAAGACTTTCATAATTTTTATCTTGCAATCAATGCACTAAAGCATGGAGACGGGACAAGT TACAAGAGTCTTATTAGTAAAATTAGTACTCTTAACTTCGTGGTGGAAAGCTCAAACACA CCAACCTTTGAAGAAGGGGATGTTTCCGGTATTTTTGGACTAGTAAAAGTCGATGATGGT TTTATTGAAAACTGCCTAGAAATAATTGAAAAAGTTTCTAAGTGCATTAAAACACACCGA CCTGACTTCATATCTTGATTGTGATTTTTAGGTAACCTTCCTCCCTATAGGGTGAGTATT ATCACAAAATAAACCACTTAGGCTCTTCGCTCTTAGCCGACTATCTGGCGGAGTATTAAT AACAAGATTCACAAATTTATCGAAGGTAGAAAAAACCGTTATTTCTTATCTAATCGCTCA TGTGGCGTTTTCCATTTCAGTAATCGCTCAACTGCCGTATCCTCTAACAAGAACTGGCGC GCTAATTGCAGACGTTCCATTACCTGAACCTTCTGCTGCTCATCAAGACTCGCCGCATCC AACTCTGCTTCACGGAAAAACTGCTCCATCCGTTTATCTTCTGCCCACTGACTCATAATG GATTTCAGCTCGGTACGGCTGGCGTTGTACGCCTCTTCTTCCTGACGTATCCGCTCCTTT TCCAGATAGATAGCGTGTTCTCGCTCCCGCTGAATCCGCCATTCCTCAGCTCTGATTCTG GCCTCTTCTAATTGCTTTGCAATCAGCGGAACTGCTTCCTGCAATACCGAAATCATCTTC GGGATCTGGCTAATCAAACCACATTGTTTTGTCTGTCGGAACTGCACTCGCCAGTCAGCG GACTCATAAGGCGAATAGAGTTGCAAAAGAAACCGTCCGGTAGGCAGCGTATGCTTAGAA ACATGAAGAAAAGGCTCGCTATTTTTACCCCGTATCCACCGCACCATCTGTTCATCCCGA ACATAGCGATTTTTGATTTTTTTCGCAGGAACATATTCCGTCATTTCGGCAAGATTGAAC GCAAAATGCATATCGCCAATGCATATGATGCTTGGCGTATAAGGCCGCCATAAATTGTCC CAGCGATATCCACCCTCTTTTGGATCTTCCTTAATATCAATATCCGCACGGTGCATTCTT TCGCCAGGAACATCCAGCGTTACCCGATATCCCTGTTTCCCCAGCGCATCAAAGAATCGG CTCAGGAACTCTATTGCACTATCAAACCCCGTATCCGAAACATTGAGATCCAGGAGCTTC TTTTTCGCAGGCTTGTAGTAACCGTCTTCAGTCACACTGGATTTCGGGAGATACGTTTTG AGATCATTGATTAACGCATAGCCGTTCCCTGTAATCGTGGTTTGCTTTCTCGTCGCTCGA GGTAGTGGTAGCTGTGGTAATGCGACTGTAGGTGACGACACGGTTACGCCAGCTTCCTTC GAGATTTTTGCCGTTTTGCCTTTTTTCAAAGCAGGTAGAGGTGGCACCGCCGGTGCAGTC CCTTTCGCCAGCGCTTTCCAGTAACCCGCGAGCGGTCTCGGTATCCGTAATTCAACGCAT CGTTTTGTCAGTTGCTCTTTGCTGATGTTATAGAGAGAGGCGATTCTCTCCGCGGGCTCG CGCCAGACCAAGTGGTACAGCGCTTCCCGATCTTGAGGTAAACCTTGGGTGATACTGGAT TGCAGGTTCTCTAACATGACATTCTCCCTTTAGGAAAACATTATCAGAGAATCTGGGTGA CAGGTGATTGAACGAAATCACTTTTTGGCAGTATGACATCGAAAGAAAAGTAAAAACAAA ATAATCTATAAAATCAATTAACTAAATTCAAAAAGCTTACTAATTTCAACCTCTAGCCCT GCCGCAAGGACACTGATCACTTCAAGGGTAGGATTTCTGACCCCTCTTTCAATCCCACTC ACATACGTACGATCGAGGCCACACTTGTCAGCAAATGCTTCCTGAGATAAGCCTGATTGT AACCTGAGCTTTTTAAGGTGTGCGCCAAAAAGAGCCTGAATACTGGATGAATTTTTCATC CAAGAAAGATGACGTGTTGACGTCTATCAGACCACGGACTATGAGTCACAAAGCGTGGTT TCTATTTCTTCTTTGGTATTTGTTTCGAACATAAACAAATGACTAAGATCTAAATCCAGA CCACCAGATATTGCCCACAAAATTTCAAGTGTAGGGTTCCGTACTCCGCGCTCAATGCCA CTCATGTATGAGCGATCAATACCGCATTTGTCGGCAAAGTCTTCCTGAGACAGCCCCGTC TCCCGACGAAGTTGCCTGATTCGGTTGCCTAGCAGCTTTTTGATTGATCCGGTCTTTTCC ATAAGACCAGCATCAATCTTTGTTGCCTATTGTTCCACGGACTATAAGTCACATAAAAAG CGTGCTAGCATACTCTAATGTGACTTATAGTCCACAAATGAGGTAACAGGAATGACTAAA CAAGACTGGCACCCAGCCGACATCATCGCCGCCCTGCACAAGCGCGGCACCAGTATGGCT GCGGTTTCGCGGGAAGCAGGGCTGGCCTCCTCCACGCTGGCGAATGCGCTTTCACGCCCC TGGCCGAAAGGCGAATGGCTGATTGCTCGCGCACTCAACCTTCACCCCGCAGAAATCTGG CCTAGCCGCTATGAGGAAGAAGGCGAACTACGGCAACCGAAAAATCCGCTCCCCGCCAGG TGTCGGTTATGATTATTTCAGACGTCAGCTTCCATAACACTCCCTCTGCTGTCCAAGTTC AGCAGGCTGCCATTCCACCGCCAGCGGAAATGCCGTTTCTCACCGCACCAACTCGCAATC ACGCCACTTTCCACTACACCCACTTTTCCCGCCACACCCTGCTGCGCCCTATCACCCGTG AAGCAGGAAGCAAAATCTATCTACAGGAAGAACCCATCTGCGGTTTCTGGTACCTCAACC ATGGCGTCGTCGGTTTACATCACACGCTGGAAAACGGCAAAGAGATGTTGGTCCGCGCCT GCCAACAGGGCGACTGGTTTGGCTATCTGGGGTTATTTGGTTCAGAATTCTATCACTGCC ACGCCTGCGTTTTGCAGACTGCATCGCTGTGCCACGTCATCCCTCACTCCAACAGCGATT TCCTGCGTCATCACCCGCAGTTCGCCCAGTTTCTGTTAAATCAGGTAGTGGCAAGTCTGT CAGATGCAGAGCATCGCATGACCTGGATCGCTCGTTATCGCACCCGTCACCGGGTACTGA GCAGCCTCTGGTATCTGACGAGTTATTTTCCCGGGTATGACTGGACGTGGCGTGAAGTAG CTGAATTTGCAGGATGTGAGACAGAAACTGCTTTGCGATTCAGTAAGGAATTAAGACTGG CCGGGATACTGGACGATTCGCAGCGCCGTCTGCATATATGTCATCCAGAGCGACTGGCAA CACTATTGGCTGGCTCTCATAATTAGTACGCCTGTTGAACCCATATACTGATCAAATATC CAGAACAAATCGTTTCATCTGGGTCAAATGAGTGATATATTTTCACCCATAAACCCCGAG GAGGCGTTATGTCTGAATTCGATTTATTTGCGCAGGAACTGCTCGAAAAAGCAGAAGCTG AAGAAAAACAACAACAAGAGCGCGACAGGAAGCTGATTGATCGGGTACTTGAAATTTACG ACCAGAAGTATGTCGCAGAACTGCTAAGAAAAATAGGTAAAAATGAGTGGAGCCGCGAAA CCCTTAACCGCTGGATAAATGGCAAGTGCGAGCCAAAATCGCTCACTATGGCTGAAGAAG CGCTGTTACGGAAAATGCTGCCGGAGCAACCCGCTCATCATCCTGACTATGATTTCCGCT TTATTGACCTGTTTGCCGGTATTGGTGGTATCCGTAAAGGATTCGAAGCCATCGGTGGGC AATGCGTTTTTACCAGCGAATGGAATAAAGAAGCGGTACGTACCTACAAAGCAAACTGGT ACAACGATGAAGACGCACACACATTCAATCTGGATATCAGGGAAGTCACGCTAAGCGGAG AAGAAGGCATCTCTGAAGAGAAGGCCTACGCTCATATCGATCAACAAATCCCGGATCATG ACGTCCTGCTGGCCGGTTTTCCCTGCCAGCCATTCAGTCTAGCTGGGGTGAGTAAGAAAA ACTCGCTCGGACGCGCACATGGGTTCGAATGTGAAGCGCAAGGGACTCTATTTTTCGATG TTGCCCGCATAATCAAGGCTAAGCAGCCAGCCATTTTTGTGCTGGAAAACGTTAAGAACC TTAAGAGTCATGATAAGGGTAAAACGTTTAAAGTCATTATGGATACCCTTGATGAATTGG GCTATGAAGTTGCTGATGCCAGTATCACAGGGAAAGATGATCCTAAAATTATTGATGGTA AAAATTTCCTGCCACAACATCGTGAGCGTATTGTTCTGGTCGGATTCCGCCGTGACCTTA ATATCCATCAGGGATTCACATTAAAGAATATTCATAAATTCTACCCTGAGAAAAGACCAA CATTTGGTCAGCTTCTGGATCCTGCGGTTGACAGTAAATATATCCTGAGTCCTAAGTTAT GGGAATATCTCTATAACTATGCTAAAAAGCATGCTGCCAAAGGTAATGGGTTCGGTTTTG GTCTGGTTGATCCGAATAATGAAAACAGCGTCGCGAGAACATTATCCGCTCGTTATCATA AAGATGGTTCTGAAATTCTCATCGACAGAGGATGGGATAAAGAACTCGGCGAAATCGATT TCTCTAATCCAGAGAATCAGGAACAAAGGCCAAGAAGACTGACGCCTCATGAATGCGCCA GACTGATGGGTTTTGAGCAACCAGGTGGCAAACCATTCCGGATCCCCGTTTCCGATACCC AGGCCTATCGCCAGTTCGGGAACTCAGTGGTCGTTCCCGTTTTTGAAGCCGTGGCGAAAC TGCTTCAGCCTTATATTATGAAAGCCGCAGCAAACAAGGCAGCCAAAAAATAATATAAAC AGATCCCCCGGAATTCATCCGGGGGATAACAGAATGAAATTATTTAATCGACATACAATG TTTTAGTTTCATCGATAAACGTTTCTAACGAAATAAGATATTCCCGGATAGTTTTCGGGT ACTTATCATGAAGACTAGTGGGCACAACCAACCTGACCCTTTCCTGCTGCATCTCCTGAA ATTGCGCAACGGAAACACCTTCCTGAAGAGTAAAGAGGTAAATGTCCTGAATTCTGTCGG CTTCATTTAATATCTGCCGCCAGCGATCTTTACAGGTCGTTTTTACTGCCAACATACGAA GCTTCTGCTCAGGAAACGTTTCATCGTGATAAGCTTGTGCAGAGGGGAATAAAAAATCTG GCTTCTTATTTCCTTCCGTGACGGCCTGAGTCTCAAAGGTTGTCAGTCCATGCTCATTAA AAAGCTGTTCAAGATGCAGCTCCAGTGATTTACCGGCCCGTGATTTTCGTCTGTTACTCA CGGAGTTCGCCAGTGCAATAAATTCATTTACTGAACCAAACCCGGACTGAACCATACCCA GAACGTGCATTTCTTCCACCAGCAGGAAAATTTCATACTCAATACGACGCCGTTCAATCA GTTGCTTATCCGGGCCAACGACATTTGGGGAATAATGAGCTGCTGCATACTGGATAATCT CCTTACCAGAAGGGAAATTCGTTCTCCACTCTTCCGGAAGATGATACCCACTGGAGACCG GTTCTTTTAAAGCCAGGCCGCCCAGAATCTCATTTGCGGGGCCATAGACTAGCGAACCGG GAACAACCTCTCCGAGTGAAGACTCAACAATATCTTCTTCTTCAGCGTCATAACACACCC AGATATCGACAAAATGACTATCTGCCCCCTGCCGATGGTCAAACGCCAGTAACGCCAGTG CACCCGTGTTCTCAGGGTCTTGCAGAGGATTTTTTCCTCCGCCCCATCGAGTAATACGCT TTTCATTTCTGGTCTTACCAAAGAAACGACCATTGTAATAAACGGCCCTGGCCTCGGTGT CCGGGCAAATGTGCGAGGAGGTATGCGCATTCAACGTCACAGACGGGTTAAGATCCCTTG TATGATTAATGGAAGGGAAAAGATGCTCAACAATGCCAGAAGGTATGTAAATGCCAACCT GATGCCCACCCGTCGCACCGGTATCGTTGGCTGACAGGCGCTTGATGAACATATAGGTGT CACTGGTTGACTTATCTAAAAGCCATGAATGTAGCCCCGACAT
Region Details
| Region | 1 |
| Region Length | 7.4Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | transposase |
| Region Position | 1-7483 |
| # tRNA | 0 |
| # Total Proteins | 10 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 3 |
| Phage + Hypothetical Protein % | 90% |
| # Bacterial Proteins | 1 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Burkho_KL3_NC_015266(2) PHAGE_Bacill_Palmer_NC_028926(1) PHAGE_Entero_SfMu_NC_027382(1) PHAGE_Entero_Mu_NC_000929(1) PHAGE_Brevib_Jimmer2_NC_041976(1) PHAGE_Citrob_Miller_NC_025414(1) PHAGE_Haemop_SuMu_NC_019455(1) PHAGE_Bacill_Page_NC_022764(1) PHAGE_Entero_RB16_NC_014467(1) PHAGE_Citrob_vB_CfrM_CfP1_NC_031057(1) PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766(1) PHAGE_Thermo_THSA_485A_NC_018264(1) PHAGE_Escher_D108_NC_013594(1) PHAGE_Brevib_Abouo_NC_029029(1) PHAGE_Bacill_phi105_NC_048631(1) PHAGE_Bacill_phi105_NC_004167(1) PHAGE_Bacill_Pookie_NC_027394(1) PHAGE_Bacill_Pony_NC_022770(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 20% |
| GC % | 45.57% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|JASA01000027.1| Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM 111149, gc%: 51.27%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 10 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 1..279 | PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; Z996_08225; phage(gi17546158) | 1.64e-41 | Showinfo_outline |
| 2 | 330..869 | hypothetical protein; Z996_08230 | 0.0 | Showinfo_outline |
| 3 | 991..1518 | hypothetical protein; Z996_08235 | 0.0 | Showinfo_outline |
| 4 | complement(1659..2957) | hypothetical protein; Z996_08240 | 0.0 | Showinfo_outline |
| 5 | complement(3078..3299) | PHAGE_Thermo_THSA_485A_NC_018264: transcriptional regulator, XRE family; Z996_08245; phage(gi397912660) | 4.92e-09 | Showinfo_outline |
| 6 | complement(3339..3602) | PHAGE_Bacill_phi105_NC_048631: hypothetical protein; Z996_08250; phage(gi100031) | 4.39e-11 | Showinfo_outline |
| 7 | 3712..3972 | PHAGE_Entero_Mu_NC_000929: DNA binding protein ner; Z996_08255; phage(gi9633495) | 2.04e-20 | Showinfo_outline |
| 8 | 3969..4706 | cyclic nucleotide-binding protein; Z996_08260 | 0.0 | Showinfo_outline |
| 9 | 4809..6233 | PHAGE_Burkho_KL3_NC_015266: gp47; Z996_08265; phage(gi327198092) | 5.48e-127 | Showinfo_outline |
| 10 | complement(6284..7483) | PHAGE_Burkho_KL3_NC_015266: gp45; Z996_08270; phage(gi327198090) | 4.28e-40 | Showinfo_outline |
Sequence
>1..279
Salmonellaentericasubsparizonaeserovar18z4z23strCVM43481FISKSLDKWAYEHGVTMDFSRPGKPTDNPFIESFNGSLRDECLNIHWFLSLEDAQEKLDNWRREYNHERTHSSLNDMTPAEFIRSLRKDEDL
Sequence
>330..869
Salmonellaentericasubsparizonaeserovar18z4z23strCVM43481MAFVWFVQKYGNDVKELILRLSKVKFGNAEAEFTLGLKAAEDLANEAPLIEVSKDLPEEGIEFSKRMSQLERIADVSPRAAIMESWLLIEEAAGKAGFVQGASIPRINPLLFIEWLVREGKIDKSTAILVDRMRKLRNEASHLRDFELTKDEAERYLKIAVQISLLIIEPESSVVLENE
Sequence
>991..1518
Salmonellaentericasubsparizonaeserovar18z4z23strCVM43481MHQFNELAYRCTYFSLRVINEAYDETMNELSETGSTPLVKILQALKLQKMIHIVGLFSIFEAHLQQGLACRNGFKEAALILEQAGEYALKEDFHNFYLAINALKHGDGTSYKSLISKISTLNFVVESSNTPTFEEGDVSGIFGLVKVDDGFIENCLEIIEKVSKCIKTHRPDFIS
Sequence
>complement(1659..2957)
Salmonellaentericasubsparizonaeserovar18z4z23strCVM43481MLENLQSSITQGLPQDREALYHLVWREPAERIASLYNISKEQLTKRCVELRIPRPLAGYWKALAKGTAPAVPPLPALKKGKTAKISKEAGVTVSSPTVALPQLPLPRATRKQTTITGNGYALINDLKTYLPKSSVTEDGYYKPAKKKLLDLNVSDTGFDSAIEFLSRFFDALGKQGYRVTLDVPGERMHRADIDIKEDPKEGGYRWDNLWRPYTPSIICIGDMHFAFNLAEMTEYVPAKKIKNRYVRDEQMVRWIRGKNSEPFLHVSKHTLPTGRFLLQLYSPYESADWRVQFRQTKQCGLISQIPKMISVLQEAVPLIAKQLEEARIRAEEWRIQREREHAIYLEKERIRQEEEAYNASRTELKSIMSQWAEDKRMEQFFREAELDAASLDEQQKVQVMERLQLARQFLLEDTAVERLLKWKTPHERLDKK
Sequence
>complement(3078..3299)
Salmonellaentericasubsparizonaeserovar18z4z23strCVM43481MKNSSSIQALFGAHLKKLRLQSGLSQEAFADKCGLDRTYVSGIERGVRNPTLEVISVLAAGLEVEISKLFEFS
Sequence
>complement(3339..3602)
Salmonellaentericasubsparizonaeserovar18z4z23strCVM43481MEKTGSIKKLLGNRIRQLRRETGLSQEDFADKCGIDRSYMSGIERGVRNPTLEILWAISGGLDLDLSHLFMFETNTKEEIETTLCDS
Sequence
>3712..3972
Salmonellaentericasubsparizonaeserovar18z4z23strCVM43481MTKQDWHPADIIAALHKRGTSMAAVSREAGLASSTLANALSRPWPKGEWLIARALNLHPAEIWPSRYEEEGELRQPKNPLPARCRL
Sequence
>3969..4706
Salmonellaentericasubsparizonaeserovar18z4z23strCVM43481MIISDVSFHNTPSAVQVQQAAIPPPAEMPFLTAPTRNHATFHYTHFSRHTLLRPITREAGSKIYLQEEPICGFWYLNHGVVGLHHTLENGKEMLVRACQQGDWFGYLGLFGSEFYHCHACVLQTASLCHVIPHSNSDFLRHHPQFAQFLLNQVVASLSDAEHRMTWIARYRTRHRVLSSLWYLTSYFPGYDWTWREVAEFAGCETETALRFSKELRLAGILDDSQRRLHICHPERLATLLAGSHN
Sequence
>4809..6233
Salmonellaentericasubsparizonaeserovar18z4z23strCVM43481MSEFDLFAQELLEKAEAEEKQQQERDRKLIDRVLEIYDQKYVAELLRKIGKNEWSRETLNRWINGKCEPKSLTMAEEALLRKMLPEQPAHHPDYDFRFIDLFAGIGGIRKGFEAIGGQCVFTSEWNKEAVRTYKANWYNDEDAHTFNLDIREVTLSGEEGISEEKAYAHIDQQIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECEAQGTLFFDVARIIKAKQPAIFVLENVKNLKSHDKGKTFKVIMDTLDELGYEVADASITGKDDPKIIDGKNFLPQHRERIVLVGFRRDLNIHQGFTLKNIHKFYPEKRPTFGQLLDPAVDSKYILSPKLWEYLYNYAKKHAAKGNGFGFGLVDPNNENSVARTLSARYHKDGSEILIDRGWDKELGEIDFSNPENQEQRPRRLTPHECARLMGFEQPGGKPFRIPVSDTQAYRQFGNSVVVPVFEAVAKLLQPYIMKAAANKAAKK
Sequence
>complement(6284..7483)
Salmonellaentericasubsparizonaeserovar18z4z23strCVM43481MSGLHSWLLDKSTSDTYMFIKRLSANDTGATGGHQVGIYIPSGIVEHLFPSINHTRDLNPSVTLNAHTSSHICPDTEARAVYYNGRFFGKTRNEKRITRWGGGKNPLQDPENTGALALLAFDHRQGADSHFVDIWVCYDAEEEDIVESSLGEVVPGSLVYGPANEILGGLALKEPVSSGYHLPEEWRTNFPSGKEIIQYAAAHYSPNVVGPDKQLIERRRIEYEIFLLVEEMHVLGMVQSGFGSVNEFIALANSVSNRRKSRAGKSLELHLEQLFNEHGLTTFETQAVTEGNKKPDFLFPSAQAYHDETFPEQKLRMLAVKTTCKDRWRQILNEADRIQDIYLFTLQEGVSVAQFQEMQQERVRLVVPTSLHDKYPKTIREYLISLETFIDETKTLYVD
Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 111149 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: Z996_08225 (Region 1)
Locus: Z996_08225ORF Start: 1
ORF Stop: 279
Strand: Forward
Protein Sequence: FISKSLDKWAYEHGVTMDFSRPGKPTDNPFIESFNGSLRDECLNIHWFLSLEDAQEKLDNWRREYNHERTHSSLNDMTPAEFIRSLRKDEDL
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: Z996_08225, ISRSO12-transposase ORFB protein, phage(gi17546158), PROPHAGE_Ralsto_GMI1000
Homolog/Ortholog E-Value: 1.64e-41
Locus 2: Z996_08230 (Region 1)
Locus: Z996_08230ORF Start: 330
ORF Stop: 869
Strand: Forward
Protein Sequence: MAFVWFVQKYGNDVKELILRLSKVKFGNAEAEFTLGLKAAEDLANEAPLIEVSKDLPEEGIEFSKRMSQLERIADVSPRAAIMESWLLIEEAAGKAGFVQGASIPRINPLLFIEWLVREGKIDKSTAILVDRMRKLRNEASHLRDFELTKDEAERYLKIAVQISLLIIEPESSVVLENE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: Z996_08230, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 3: Z996_08235 (Region 1)
Locus: Z996_08235ORF Start: 991
ORF Stop: 1518
Strand: Forward
Protein Sequence: MHQFNELAYRCTYFSLRVINEAYDETMNELSETGSTPLVKILQALKLQKMIHIVGLFSIFEAHLQQGLACRNGFKEAALILEQAGEYALKEDFHNFYLAINALKHGDGTSYKSLISKISTLNFVVESSNTPTFEEGDVSGIFGLVKVDDGFIENCLEIIEKVSKCIKTHRPDFIS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: Z996_08235, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 4: Z996_08240 (Region 1)
Locus: Z996_08240ORF Start: 1659
ORF Stop: 2957
Strand: Backward
Protein Sequence: MLENLQSSITQGLPQDREALYHLVWREPAERIASLYNISKEQLTKRCVELRIPRPLAGYWKALAKGTAPAVPPLPALKKGKTAKISKEAGVTVSSPTVALPQLPLPRATRKQTTITGNGYALINDLKTYLPKSSVTEDGYYKPAKKKLLDLNVSDTGFDSAIEFLSRFFDALGKQGYRVTLDVPGERMHRADIDIKEDPKEGGYRWDNLWRPYTPSIICIGDMHFAFNLAEMTEYVPAKKIKNRYVRDEQMVRWIRGKNSEPFLHVSKHTLPTGRFLLQLYSPYESADWRVQFRQTKQCGLISQIPKMISVLQEAVPLIAKQLEEARIRAEEWRIQREREHAIYLEKERIRQEEEAYNASRTELKSIMSQWAEDKRMEQFFREAELDAASLDEQQKVQVMERLQLARQFLLEDTAVERLLKWKTPHERLDKK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: Z996_08240, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: Z996_08245 (Region 1)
Locus: Z996_08245ORF Start: 3078
ORF Stop: 3299
Strand: Backward
Protein Sequence: MKNSSSIQALFGAHLKKLRLQSGLSQEAFADKCGLDRTYVSGIERGVRNPTLEVISVLAAGLEVEISKLFEFS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: Z996_08245, transcriptional regulator, XRE family, phage(gi397912660), PHAGE_Thermo_THSA_485A_NC_018264
Homolog/Ortholog E-Value: 4.92e-09
Locus 6: Z996_08250 (Region 1)
Locus: Z996_08250ORF Start: 3339
ORF Stop: 3602
Strand: Backward
Protein Sequence: MEKTGSIKKLLGNRIRQLRRETGLSQEDFADKCGIDRSYMSGIERGVRNPTLEILWAISGGLDLDLSHLFMFETNTKEEIETTLCDS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: Z996_08250, hypothetical protein, phage(gi100031), PHAGE_Bacill_phi105_NC_048631
Homolog/Ortholog E-Value: 4.39e-11
Locus 7: Z996_08255 (Region 1)
Locus: Z996_08255ORF Start: 3712
ORF Stop: 3972
Strand: Forward
Protein Sequence: MTKQDWHPADIIAALHKRGTSMAAVSREAGLASSTLANALSRPWPKGEWLIARALNLHPAEIWPSRYEEEGELRQPKNPLPARCRL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: Z996_08255, DNA binding protein ner, phage(gi9633495), PHAGE_Entero_Mu_NC_000929
Homolog/Ortholog E-Value: 2.04e-20
Locus 8: Z996_08260 (Region 1)
Locus: Z996_08260ORF Start: 3969
ORF Stop: 4706
Strand: Forward
Protein Sequence: MIISDVSFHNTPSAVQVQQAAIPPPAEMPFLTAPTRNHATFHYTHFSRHTLLRPITREAGSKIYLQEEPICGFWYLNHGVVGLHHTLENGKEMLVRACQQGDWFGYLGLFGSEFYHCHACVLQTASLCHVIPHSNSDFLRHHPQFAQFLLNQVVASLSDAEHRMTWIARYRTRHRVLSSLWYLTSYFPGYDWTWREVAEFAGCETETALRFSKELRLAGILDDSQRRLHICHPERLATLLAGSHN
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: Z996_08260, cyclic nucleotide-binding protein
Homolog/Ortholog E-Value: N/A
Locus 9: Z996_08265 (Region 1)
Locus: Z996_08265ORF Start: 4809
ORF Stop: 6233
Strand: Forward
Protein Sequence: MSEFDLFAQELLEKAEAEEKQQQERDRKLIDRVLEIYDQKYVAELLRKIGKNEWSRETLNRWINGKCEPKSLTMAEEALLRKMLPEQPAHHPDYDFRFIDLFAGIGGIRKGFEAIGGQCVFTSEWNKEAVRTYKANWYNDEDAHTFNLDIREVTLSGEEGISEEKAYAHIDQQIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECEAQGTLFFDVARIIKAKQPAIFVLENVKNLKSHDKGKTFKVIMDTLDELGYEVADASITGKDDPKIIDGKNFLPQHRERIVLVGFRRDLNIHQGFTLKNIHKFYPEKRPTFGQLLDPAVDSKYILSPKLWEYLYNYAKKHAAKGNGFGFGLVDPNNENSVARTLSARYHKDGSEILIDRGWDKELGEIDFSNPENQEQRPRRLTPHECARLMGFEQPGGKPFRIPVSDTQAYRQFGNSVVVPVFEAVAKLLQPYIMKAAANKAAKK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: Z996_08265, gp47, phage(gi327198092), PHAGE_Burkho_KL3_NC_015266
Homolog/Ortholog E-Value: 5.48e-127
Locus 10: Z996_08270 (Region 1)
Locus: Z996_08270ORF Start: 6284
ORF Stop: 7483
Strand: Backward
Protein Sequence: MSGLHSWLLDKSTSDTYMFIKRLSANDTGATGGHQVGIYIPSGIVEHLFPSINHTRDLNPSVTLNAHTSSHICPDTEARAVYYNGRFFGKTRNEKRITRWGGGKNPLQDPENTGALALLAFDHRQGADSHFVDIWVCYDAEEEDIVESSLGEVVPGSLVYGPANEILGGLALKEPVSSGYHLPEEWRTNFPSGKEIIQYAAAHYSPNVVGPDKQLIERRRIEYEIFLLVEEMHVLGMVQSGFGSVNEFIALANSVSNRRKSRAGKSLELHLEQLFNEHGLTTFETQAVTEGNKKPDFLFPSAQAYHDETFPEQKLRMLAVKTTCKDRWRQILNEADRIQDIYLFTLQEGVSVAQFQEMQQERVRLVVPTSLHDKYPKTIREYLISLETFIDETKTLYVD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: Z996_08270, gp45, phage(gi327198090), PHAGE_Burkho_KL3_NC_015266
Homolog/Ortholog E-Value: 4.28e-40
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download