Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1798954293 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1798954293.PHASTER.zip
gi|00000000|ref|NZ_WXYS01000011.1| Salmonella enterica subsp. enterica serovar Typhimurium strain 157652, gc%: 53.83%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.3Kb | incomplete | 50 | 11 | 92-8486 info_outline | PHAGE_Phage_Gifsy_1_NC_010392(6) | 45.69% | Show info_outline |
Region DNA
>1 92-8486 ATGACTATGTCGCGCGTAATTTCGCTGGCGGCAGGGGTTTCCCTGTCCGTTTTATTTTCC ACCGCTGCCGTTGCCGATAACGGAAGAGGAAGCGGTAACAGCAATATTGAAAACCAGACC CGGATTTATACCGGTACTGACCGCGGGCAGAAACAGCACCGCGAGGCAAAGGGACAAATA ATCACGCGGAGCGTCCAGTGTTCGCTGCCGGCATATTTACGTGACCCGGATAATCAGTGC TGAGATGTGAATGAATCTGAAGCCTGCCTGCGGGCGGGCTTTTTTATGGAGGCAATATGC CAGTACTTATTTCCGGCGTACTGAAAGATGGTACGGGAACGCCGGTACAGAACTGCACCA TTCAGCTGAAGGCCTGCCGGACCAGTACGACGGTGGTCGTGAATACGGTGGCATCGGAAA ATCCGGATGACGCCGGGCGCTACAGCATGGATGTGGAGCAGGGGCAGTACACAGTCACGC TCCTGGTGGAAGGGTATCCCCCGTCACATGCCGGAGTTATTACGGTCTACGATGATTCAA AACCGGGCACCCTGAATGATTTTCTGGGGGCCATGACGGAAGACGACGTCCGCCCGGAGG CGCTGCGACGTTTTGAGGCGATGGTGGAAGAAGTTGCCCGCCAGGCATCGGAGGCATCGC GGAATGCCACCGCCGCAGGGCAGGCATCTGAACAGGCGCAGACATCAGCAGGTCAGGCAG CGGAAAGCGCCACGGCAGCAGTGAATGCAGCCGGAGCGGCAGAAGCATCAGCCACACAGG CAGCCTCATCCGCAGCATCTGCGGAGAGCAGCGCAGGTACGGCGACCACAAAAGCCGGGG AGGCATCAGCCAGCGCGGCGTCGGCTGACACAGCCAGAACGGCGGCAGCCGCATCGGCAG CCGCAGCGAAAACATCTGAAGCGAATGCAGATGTCTCCCGTACTGCCGCCGGCGATTCAG CTGCTGCCGCAGCCGCCAGCGCGACGGCGGCGCAGACATCAGCAGCGCGCGCCGGAGCAT CCGAAACCGCCGCGAAGACGTCAGAAACGCAGGCGGCTTCCAGTGCCGGTGATGCAGGTG CGTCAGCCACTGCGGCGGCAGCGTCGGAAAAGGCGGCAGCCGCATCGGCAGCCGCAGCAA AAATATCTGAGACAAACGCTGCAACGTCAGCAAGTACAGCAGCGGCCAGCGCAACAGCCG CCTCGTCATCAGCATCGGAGGCATCCAATCACGCCGCCGCATCTGATACCAGCGCATCAC TGGCGGCGCAAAGCAGTACTGCTGCCGGAGCAGCAGCCACCAGAGCAGAAGATGCCGCAA AACGGGCAGAAGACATCGCGGACGTGATTTCCCTGGAAGATGCCAGCCTGACGAAAAAAG GTATCGTTAAGTTAAGCAGCGCCACGGACAGTGACAGCGAAGCGCTGGCAGCCACGCCAA AGGCGGTCCATGCTGTCATGGACGAGGTACAGACCAAAGCGCCGCTGGACAGTCCGGTAT TCACTGGAACGCCGACCACACCGACGCCGCCAGATGACGCTAAGGGACTTCAGACTGCAA ACGCTGAGTTTGTTCGTAAACTGATTGCTGCACTGGTCGGTTCCGTACCTGAGTCGCTGG ATACGCTGCAGGAACTGGCTGACGCGCTGGGTAACGATCCTAATTTTGCTACCACTATCA CTAACATGATTGCGGGCAAGCAGCCGCTGGACGATACACTGACGGCGCTGTCAGGAAAAA GCATTGAAGGTCTTATCGAATACGTTGGTTTACGGAGCACAATTGATAAGGCTGCTGGTG CGTTGCCTGCTGGTGGTACGGCTGTCGCAGCGAACAGGCTTGCATCACGCGGCGCGCTTC CGGCACTGACTGGCACGACAAGAGGCAGCGATGGCGGCCTGATAATGGGCGAGGTCTACA ACAATGGCTATCCGACGCAATACGGAAATATTTTACGTCTGACCGGAACCGGTGATGGGG AAATCCTCATTGGCTGGAGCGGGACAAATGGTGCGCCAGCGCCCGCATATATTCGCAGCC ATCGAGATACCGCCGATGCTGAGTGGTCCGAATGGGCAATGCTTTACACCACACTAAACC CACCTCCGGATTCGCATCCAGTAGGGGCGGCGATTGCATGGCCATCTGATGCTACTCCGG CAGGTTACGCTCTGATGCAGGGGCAGTCCTTCGATAAATCTGCTTACCCGTTACTGGCTA TAGCGTATCCGTCCGGCGTTATCCCTGACATGAGAGGCTGGACAATAAAGGGTAAGCCCA TCAGTGGACGTGCCGTATTGTCGCAAGAAATGGACGGCAATAAATCGCACTCGCACACCG CGCGGGCGCAGGATACTGACTTAGGGACAAAATCTACCTCATCTTTTGATTACGGCACGA AATCGACCAATACCACGGGCAACCATACTCACCAGTTCGGCGGTTATATCAATTCATACT GGGGAGACTCCAATCACACCTCATTTCAGCCTGGAGGTGGTGCATGGACACAGGCCGCTG GCGACCATGCGCATACAGTTTATATCGGAGGACACGAGCACACCATGTATATCGGTCCAC ACGGTCACGTCGTTATTGTGGACGCAGACGGTAATGCGGAAACCACGGTTAAAAATATTG CATTTAACTACATAGTGAGGCTGGCATGATTAAATTAATTCTTTCAGCACCCGTGCCAGC AATGGCCGTGGCTTTTGAACATTCTTTTCAGAATACCGAAAATGTGGAAATTATCCCCGG ACCGTTTGAAACCATACCGGAATTTGACTGCATGGTCAGTGCGGCCAACAGCTTTGGTCT TATGGATGGTGGTGTGGATGCTGCTATTACGGCATATTTCGGGCCGCAATTACAGGAACG GGTACAGCAACATATCCTCCGTGAATATCTGGGAGAACAGCCCGTCGGCACCGCCTTTGT TATTGAAACGGGTAACAGTAAATATCCGTGGCTGGTTCACGCCCCGACGATGCGCGTTCC GCTGATAATCGACGGCACCGACGCGGTTTATAATGCAACACGTGCAGCGTTATTAGCGAT ATTTCAGCACAATAAAAGCGCCGGGGAAGACAGGAAAATTAAATCGGTAGTATTCCCTGC GATGGGGGCCGGGTGTGGTCAGGTATCCCCGGGCAGTGTCGCCCGGCAAATGAAGCTGGC GTGGGATGGTTTTATTAACTGCACCACGGAAATTAACTGGCAATACGCCAGCGCCCGCCA GAATGCTGTATTCAGTACAACGGCATACTGTCCGTCAAAGGCGCTTTGTCCGAACGCCAG AACGGAATATATCGGTTTTGGTGATTACAGAACGTATTGCAAAAAATCAGGTAACACCTG CATCAGTCCCCGTCATCAGGTTGATGATATTTATATTGGTGCGCATAGCCATGCTGTTTT CCTTAGCCCCAATTCTCATGGAAAGCACCTGAAACCTGAATATTTATCCGGAGTAAAAAA TGACGTTTAAAATGAGCGATACCCCGCAGACAATTAAAATTTTTAATCTGCGTTCAGATA CAAACGAATTTATTGGTGCAGGTGATGCATATATCCCGCCACACACTGGATTACCGGCAA ATTGTACGGATATTGCGCCCCCGGATATTCCAGCCAGTCATATTGCGATATTTGATGCTG AAACCGGAACGTGGAGTCTGCATGAGGACCACCGCGGCGAGACGGTTTACGACACAACAA CCGGCAATCAGGTTTATATTTCCGCTCCCGGCCCGCTACCTGAAAATGTCACATCAGTTT CACCAGACGGTGAATACCAGAAATGGGATGGTAAGGCGTGGGTGAAGGATGAAGCTGCGG AAACAGCGGCCAGACTTCGTGAAGCTGAAGGGACCAAAAGCCGTCTTTTGCAAATGGCAT CTGAAAAAATCGCGCCGTTACAGGATGCAGTGGATCTGGACGAAGCAACCGATAAAGAAA AAGCTTCTCTTCTGGCATGGAGAAAGTACCGGGTACAGGTAAACCGTGTTGATACTTTAA AGCCTGTCTGGCCGGAGAAACCAGCCAGTAGTTTATAATTTGTCAGGAAAGCTCAGGCCT TATTTATAGCAAATATGAAGAAGACCTGTCTGTCATAACTGATATGGTTACTGGTTAGTA TATTAAATTTATACTCAATAACCTCTACACATTTTAAACCAATCTTCAGGGAAGGGTATG CCAGCAGGCCAAAGATTACACCACTTTTGAGGCATTGGCTTAATTGTTTCTTCTTTTTTA TGATCTTGAGAGTCTGCCGCTATTGTAAGAGCAGAATATAGTGAAGATGGTAATATTAAA ATCATTGCTAAAAATACGCTCTTAACGTGTTTAATAATACGTTGCCTGTTAAATTTTGGC ACACTATCCTTACGGTTACAGCATCCTTTACTATAGATATTAAACGTTATTCATTACCAT CAGGTGAGTAAATAAAAACCATTTATAAAATATTTAACTTAAATAAAAATGATAAGCGCT ATTATATTTTCTTTCCAATGTAAATTAATTCATATGAGAGTGAGTTCATGTGCTATTCAA ATCCTTACTGGCTCCCATCCACTGGGAGCGCAGGCCGGGCGCCTGATTAGGGCAGGAGTA CCGCGACAGCAGGTAACGATTATTTATGATGCGGGGCTGTCGACGCTGTACAGAAAATTC CCAGTCTCTAAACTGGCTTAAATATGCGCACATGACAATACAACCAGAAAATCACCGGGC AGGGGATACCGCAACAGTGGGCTATGAAGCGAGAAATACTTTCGCTGCGGTACACCACAA GATACTCTGAGCTATTGCGTGTTAAGTAACTTGTTCAATCAATTCCGGGTGTTGGCTCTT CACACTCCATACAGCGCGAGACAGCGTGCCAGATAAATTCTTCTGCCGGCACGGCACAGA AGGAAATTATCTCTCCGGCTTACTTCCCTACAACATCATGAGATCCAGTGAGTTTGATGA TGGAACGAGGATGTGATGGGGCATATATGGGACATAAAACGCCACTTGCTTTAAGGTAAA CTTAGACGACTGATGTTTAAGCAAGCTCTAACAATCTGTTATTTAGTGCACTCCTGGACG AGCTTTATTGTTTATGAAAAATACATGACCATATGATGAGGATTATCCGCATCACACTTG TCCAGCGCCTCCACACCGTCAGCGGTGAATCAGTTAATCCAGCGTCCAATGGGTGAACGG GCGTAGCAGAGCGTTCTGGCAACGTGGCCGATACTGTCTCCCGGGTTGCAGCATCAACAT GGCAGTCAGTCTGCGGGCATGGTTTTTGTCACGCGTTTTATGGATAGTTTTCTGCATCAG GCGTCGTTCGGTACGGGGAATTGGTGCTATGATCGGCATCGCTTAGTCCGGTTGGTGATT TGTGATTTTTGGCGATTGATCAAATCACACAATCCGGACTGAGTTCAATCAAAGTGATCT ACTATTCGGCGCAGCTATTTATAACGCTTTGTTTTATTCATCCGGGAAAACCTCTGCAGA ATGCCTGTATTGAGCGATATAACCGGACGGTGGGTTATGACTGGCTGGGGTAGTGCAACT GGTGCTACCTGATAATTTACATTCATCATTGCTACTAATGCTTAATAGTTTTTGGGTTAA AGCATCCGGGGAAACTGGTAATGATAAAGACTCTTTAGTCTCTAAAACTGCAGGGGTGCC GAGTAGAAAAACAATGCTTTCCAGGGGCTGGTACTCGAGGCTTATACGTTCCTGTAATCC TCTATTGTAGCCTTCAACATCTGTAGCTAATGTATTCTGCGGAACATGCTGATCATTTAA GACAAAGCATTGCAAAGAAGAATCATTCGCATGTATTGAGGTATGTTCATCTAAAAATGT AGCCTTGTCCTCTAAATTAACATCGCTTACACATGCATATGGAGCGATTGTGCTCGCCAC CCTGTTAGTACTATTAATTGTAAACATGTTACCTCCTAAGGAAAACCACAAGTATGATCC ATAAATCACTAAGATATAAATATATACGAATCTCATCACAACAAGAGGAGACCCTTTTAC ATGCAGTAGTTTTTAAAGAAAAGTAATTCAAGCCTGTTAGACCTATCAATTAATACACCT CATAACTTCTGTTACATCTGGAACTTCCTGATTTATTAGCTGGGAATTATCTGTAAACGG GTAATATAACGTTGTGAAAAATCAGGCTGGTGTCAATAAAACATGCCATCCTGAAGTAAT ATTCAGTATACTAACAACCACAAACCTGAGACCAATTCAGTTGCTTCAGGATATCTGGCG GCCAGCCACTGGAAAAATGTTTTGTATTATCTGGTGGGGAGAATGACTGGCAGCCATCAC CAATGCCGAAAAGGTCGTTGCCGACAGCACCAGAAGCAATGGTAAAAATATACTATTTTT CATAATTTCACCTGTAAATACTCAGATTGCCCTTGCCCTTGCCCTTGCCCTTGCCCTTGC CCTTGCCCTTGCCCTTGCCCTTGCTATTGATGTCGTTTATGCTCAGCATAGTTCACACTT CACTGTCATTGGATTAATAATTAAGTTTGTTGAGCGAAAATTTAATTAAAGAAAAAATAA TAAGCATCGATATTTTTCTTTTTTTGCAGGTTTTCAACGCATGCCCGAATAAACGTGCGC AGATGGTGAAAAATCTGGTTGGCCATAAAAAAGTTTAAAGATAAATGCAGGTGCTTATCT GTTGCGATATCAATTAAATTAATCTTGTTTTTTATTCATACCCTTGCCAAACAGATATGT AGCAAGAAAATATGATACTAAGTAAAGTTGGCATGTAGTCTAGAGTTAGGGGGAGTATAT ATCCTTAACTCCAATAGGGCTGCTCTATATATAAATATATTAATTGCATATTTTTTTAAA GTCAACGATTTCTATTTTTAGGCTTATATTTATCCCAACCAACTAATGAAAAAACATCTT CGTGTGAAATAGCCTCACCATTAAGAAAAAATTTAACATTTTGTTTTACCAGATCATCAT GTCGATTCCGATATACCCATCTTAGCTCATGTGCTGTAATAGAATTACCATGCTTTCCTG TTTTATTTGCGATATCACTTATAGCATCAACTAAATTGTCAATGACAAAAATAACTGACC GTTCCCTCAATCGTGTTTGAAATTCAAGACCGGCTTTACTTGTTTTTATCCAGCACTCCT CATTGGATAAGTCTGAATATTTATCTTCGGTAATATTGTATTTTTTATGTTGAGATAAAA ATTCTCTAAAAAAAATCCCTCTCTGAACATCATTCAATCTTTCTGCTATCTTCTCATCTT TATTAAACACGGCTCTATTCTTCCTGTCCCAGACCGCATCTGTTAATGTATTTTGAATAA TAATATCTTTTTTTGAAAAATAATATAACGAATTAACTAAAGTATTTACTCGATCTCTTG CCTTACATAAACCATAAACCACATCTCCAGGCTGAAAACTTAACACATCTCCTGCAGGTT TGTTACTAAAGGTAATATCACTCCTGGTAAGAAATTCAGGATTAAGCTTAACATAACCAT CGGTACTAATATCTATATGTGCAGGCAGATTGCAGGTTGGTATTTCCCATGCAATAGGGG TCCTTGAGGATAAATTGATAGACTTTAAATTAACAGGAAGCTTAACTGGAAGTTTAATAT TATCACAAAAGTTGATACTTAATTTTTTTAGCTTATCAGGCAAAATATCATCTATAACAG TACCGGGAACTGTTCGTATAAGTTCAATACTTAGTTCTTTTAACTCCTCAGGTAACATTT TCATTAATGGCAAGAAAGGGCAATTTTGTAAATCTAATTTATCTAATTTATATGGTAACT CAGCACATAATATTTCAGAGAAATTTTGCAATGACAAAGAAGATAGATGCGGAGGAAGGG GAGGCAAAAATTTACCATAGCATGCAGTAAAACTCTTTAATCCATAAGGTAATGCGGGGA AAGTATAATTTTCTTCATATGCCTGCATATCTATAGATAGTGACTCTAAGCTATCTGGGA AATATGAAATTTTAATGGTCTGATTTCCAGATATAGTTAAACTTTTTAACCCATCAGGAA GATTTGGAATAGACTCCAGTGTATAGCATGAAGATAAATTCAATTCGGATAAATTATCAG GAAATACCGGAATAGAGGTAACATGATGAGCAGTAATTGATAAGCTCCCGGTATGATTTG CTTCTATTATTTTGTCGTAAATACTATTACGCTCCTCCTTCTCAATATCTGGGGATTCTA TTCTCCATTTATTTAATAACTCAAGGTTTGATGTCGCCTCGTTACTTGTATATGCATATT GCAATATGGCTGGTTGGAATCCTATTTTCATGCGCTTTTTCAATCTATATGTCAA
Region Details
| Region | 1 |
| Region Length | 8.3Kb |
| Completeness(score) | incomplete(50) |
| Specific Keyword | tail,transposase |
| Region Position | 92-8486 |
| # tRNA | 0 |
| # Total Proteins | 11 |
| # Phage Hit Proteins | 10 |
| # Hypothetical Proteins | 1 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Phage_Gifsy_1_NC_010392(6) PHAGE_Phage_Gifsy_2_NC_010393(3) PHAGE_Salmon_SEN5_NC_028701(2) PHAGE_Salmon_SEN4_NC_029015(2) PHAGE_Salmon_SJ46_NC_031129(1) PHAGE_Sinorh_phiM7_NC_041929(1) PHAGE_Salmon_Fels_1_NC_010391(1) PHAGE_Salmon_RE_2010_NC_019488(1) PHAGE_Salmon_SI7_NC_049460(1) PHAGE_Escher_APCEc01_NC_029091(1) PHAGE_Escher_500465_1_NC_049342(1) PHAGE_Entero_vB_EcoM_VR25_NC_028925(1) PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1) PHAGE_Entero_Mu_NC_000929(1) PHAGE_Escher_pro483_NC_028943(1) |
| First Most Common Phage # | 6 |
| First Most Common Phage % | 54.54% |
| GC % | 45.69% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NZ_WXYS01000011.1| Salmonella enterica subsp. enterica serovar Typhimurium strain 157652, gc%: 53.83%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 11 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 92..334 | PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; SEETMRM13676_RS16310; phage(gi169257215) | 1.82e-53 | Showinfo_outline |
| 2 | 388..2760 | PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage side tail fiber protein; Lambda gpSft (gpN) homolog; SEETMRM13676_RS16315; phage(gi169257214) | 0.0 | Showinfo_outline |
| 3 | 2757..3581 | PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical protein; contains pfam01661, Macro, Macro domain; SEETMRM13676_RS16320; phage(gi169257213) | 0.0 | Showinfo_outline |
| 4 | 3571..4149 | PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage side tail fiber assembly factor & structural component; Lambda gpTfa homolog; SEETMRM13676_RS16325; phage(gi169257212) | 8.01e-141 | Showinfo_outline |
| 5 | complement(4246..4473) | PHAGE_Phage_Gifsy_1_NC_010392: PagK-like protein; SEETMRM13676_RS16330; phage(gi169257211) | 9.51e-51 | Showinfo_outline |
| 6 | 4580..4792 | PHAGE_Escher_500465_1_NC_049342: hypothetical protein; SEETMRM13676_RS16335; phage(gi100035) | 2.32e-08 | Showinfo_outline |
| 7 | 4828..4920 | PHAGE_Salmon_vB_SosS_Oslo_NC_018279: error-prone lesion bypass DNA polymerase V; SEETMRM13676_RS16340; phage(gi399528790) | 7.48e-09 | Showinfo_outline |
| 8 | complement(5284..5470) | PROPHAGE_Escher_CFT073: putative transposase; SEETMRM13676_RS16345; phage(gi26246170) | 3.23e-14 | Showinfo_outline |
| 9 | 5545..5664 | PROPHAGE_Xantho_33913: ISxcd1 transposase; SEETMRM13676_RS16350; phage(gi21231544) | 8.90e-07 | Showinfo_outline |
| 10 | complement(6377..6514) | hypothetical protein; SEETMRM13676_RS16360 | 0.0 | Showinfo_outline |
| 11 | complement(6993..8486) | PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; SEETMRM13676_RS16365; phage(gi169257209) | 0.0 | Showinfo_outline |
Sequence
>92..334
SalmonellaentericasubspentericaserovarTyphimuriumMTMSRVISLAAGVSLSVLFSTAAVADNGRGSGNSNIENQTRIYTGTDRGQKQHREAKGQIITRSVQCSLPAYLRDPDNQC
Sequence
>388..2760
SalmonellaentericasubspentericaserovarTyphimuriumMPVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTVTLLVEGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQAAESATAAVNAAGAAEASATQAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADVSRTAAGDSAAAAAASATAAQTSAARAGASETAAKTSETQAASSAGDAGASATAAAASEKAAAASAAAAKISETNAATSASTAAASATAASSSASEASNHAAASDTSASLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVHAVMDEVQTKAPLDSPVFTGTPTTPTPPDDAKGLQTANAEFVRKLIAALVGSVPESLDTLQELADALGNDPNFATTITNMIAGKQPLDDTLTALSGKSIEGLIEYVGLRSTIDKAAGALPAGGTAVAANRLASRGALPALTGTTRGSDGGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTTLNPPPDSHPVGAAIAWPSDATPAGYALMQGQSFDKSAYPLLAIAYPSGVIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHTARAQDTDLGTKSTSSFDYGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYIVRLA
Sequence
>2757..3581
SalmonellaentericasubspentericaserovarTyphimuriumMIKLILSAPVPAMAVAFEHSFQNTENVEIIPGPFETIPEFDCMVSAANSFGLMDGGVDAAITAYFGPQLQERVQQHILREYLGEQPVGTAFVIETGNSKYPWLVHAPTMRVPLIIDGTDAVYNATRAALLAIFQHNKSAGEDRKIKSVVFPAMGAGCGQVSPGSVARQMKLAWDGFINCTTEINWQYASARQNAVFSTTAYCPSKALCPNARTEYIGFGDYRTYCKKSGNTCISPRHQVDDIYIGAHSHAVFLSPNSHGKHLKPEYLSGVKNDV
Sequence
>3571..4149
SalmonellaentericasubspentericaserovarTyphimuriumMTFKMSDTPQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPASHIAIFDAETGTWSLHEDHRGETVYDTTTGNQVYISAPGPLPENVTSVSPDGEYQKWDGKAWVKDEAAETAARLREAEGTKSRLLQMASEKIAPLQDAVDLDEATDKEKASLLAWRKYRVQVNRVDTLKPVWPEKPASSL
Sequence
>complement(4246..4473)
SalmonellaentericasubspentericaserovarTyphimuriumMPKFNRQRIIKHVKSVFLAMILILPSSLYSALTIAADSQDHKKEETIKPMPQKWCNLWPAGIPFPEDWFKMCRGY
Sequence
>4580..4792
SalmonellaentericasubspentericaserovarTyphimuriumMISAIIFSFQCKLIHMRVSSCAIQILTGSHPLGAQAGRLIRAGVPRQQVTIIYDAGLSTLYRKFPVSKLA
Sequence
>4828..4920
SalmonellaentericasubspentericaserovarTyphimuriumGQGIPQQWAMKREILSLRYTTRYSELLRVK
Sequence
>complement(5284..5470)
SalmonellaentericasubspentericaserovarTyphimuriumMPIIAPIPRTERRLMQKTIHKTRDKNHARRLTAMLMLQPGRQYRPRCQNALLRPFTHWTLDC
Sequence
>5545..5664
SalmonellaentericasubspentericaserovarTyphimuriumMIYYSAQLFITLCFIHPGKPLQNACIERYNRTVGYDWLG
Sequence
>complement(6377..6514)
SalmonellaentericasubspentericaserovarTyphimuriumMKNSIFLPLLLVLSATTFSALVMAASHSPHQIIQNIFPVAGRQIS
Sequence
>complement(6993..8486)
SalmonellaentericasubspentericaserovarTyphimuriumMTYRLKKRMKIGFQPAILQYAYTSNEATSNLELLNKWRIESPDIEKEERNSIYDKIIEANHTGSLSITAHHVTSIPVFPDNLSELNLSSCYTLESIPNLPDGLKSLTISGNQTIKISYFPDSLESLSIDMQAYEENYTFPALPYGLKSFTACYGKFLPPLPPHLSSLSLQNFSEILCAELPYKLDKLDLQNCPFLPLMKMLPEELKELSIELIRTVPGTVIDDILPDKLKKLSINFCDNIKLPVKLPVNLKSINLSSRTPIAWEIPTCNLPAHIDISTDGYVKLNPEFLTRSDITFSNKPAGDVLSFQPGDVVYGLCKARDRVNTLVNSLYYFSKKDIIIQNTLTDAVWDRKNRAVFNKDEKIAERLNDVQRGIFFREFLSQHKKYNITEDKYSDLSNEECWIKTSKAGLEFQTRLRERSVIFVIDNLVDAISDIANKTGKHGNSITAHELRWVYRNRHDDLVKQNVKFFLNGEAISHEDVFSLVGWDKYKPKNRNR
Salmonella enterica subsp
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 157652 bps
Phages: 1
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Locus 1: SEETMRM13676_RS16310 (Region 1)
Locus: SEETMRM13676_RS16310ORF Start: 92
ORF Stop: 334
Strand: Forward
Protein Sequence: MTMSRVISLAAGVSLSVLFSTAAVADNGRGSGNSNIENQTRIYTGTDRGQKQHREAKGQIITRSVQCSLPAYLRDPDNQC
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: SEETMRM13676_RS16310, hypothetical protein, phage(gi169257215), PHAGE_Phage_Gifsy_1_NC_010392
Homolog/Ortholog E-Value: 1.82e-53
Locus 2: SEETMRM13676_RS16315 (Region 1)
Locus: SEETMRM13676_RS16315ORF Start: 388
ORF Stop: 2760
Strand: Forward
Protein Sequence: MPVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTVTLLVEGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQAAESATAAVNAAGAAEASATQAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADVSRTAAGDSAAAAAASATAAQTSAARAGASETAAKTSETQAASSAGDAGASATAAAASEKAAAASAAAAKISETNAATSASTAAASATAASSSASEASNHAAASDTSASLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVHAVMDEVQTKAPLDSPVFTGTPTTPTPPDDAKGLQTANAEFVRKLIAALVGSVPESLDTLQELADALGNDPNFATTITNMIAGKQPLDDTLTALSGKSIEGLIEYVGLRSTIDKAAGALPAGGTAVAANRLASRGALPALTGTTRGSDGGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTTLNPPPDSHPVGAAIAWPSDATPAGYALMQGQSFDKSAYPLLAIAYPSGVIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHTARAQDTDLGTKSTSSFDYGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYIVRLA
Homolog/Ortholog Species: Fiber protein
Homolog/Ortholog Protein: SEETMRM13676_RS16315, bacteriophage side tail fiber protein, Lambda gpSft (gpN) homolog, phage(gi169257214), PHAGE_Phage_Gifsy_1_NC_010392
Homolog/Ortholog E-Value: 0.0
Locus 3: SEETMRM13676_RS16320 (Region 1)
Locus: SEETMRM13676_RS16320ORF Start: 2757
ORF Stop: 3581
Strand: Forward
Protein Sequence: MIKLILSAPVPAMAVAFEHSFQNTENVEIIPGPFETIPEFDCMVSAANSFGLMDGGVDAAITAYFGPQLQERVQQHILREYLGEQPVGTAFVIETGNSKYPWLVHAPTMRVPLIIDGTDAVYNATRAALLAIFQHNKSAGEDRKIKSVVFPAMGAGCGQVSPGSVARQMKLAWDGFINCTTEINWQYASARQNAVFSTTAYCPSKALCPNARTEYIGFGDYRTYCKKSGNTCISPRHQVDDIYIGAHSHAVFLSPNSHGKHLKPEYLSGVKNDV
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: SEETMRM13676_RS16320, conserved hypothetical protein, contains pfam01661, Macro, Macro domain, phage(gi169257213), PHAGE_Phage_Gifsy_1_NC_010392
Homolog/Ortholog E-Value: 0.0
Locus 4: SEETMRM13676_RS16325 (Region 1)
Locus: SEETMRM13676_RS16325ORF Start: 3571
ORF Stop: 4149
Strand: Forward
Protein Sequence: MTFKMSDTPQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPASHIAIFDAETGTWSLHEDHRGETVYDTTTGNQVYISAPGPLPENVTSVSPDGEYQKWDGKAWVKDEAAETAARLREAEGTKSRLLQMASEKIAPLQDAVDLDEATDKEKASLLAWRKYRVQVNRVDTLKPVWPEKPASSL
Homolog/Ortholog Species: Fiber protein
Homolog/Ortholog Protein: SEETMRM13676_RS16325, bacteriophage side tail fiber assembly factor & structural component, Lambda gpTfa homolog, phage(gi169257212), PHAGE_Phage_Gifsy_1_NC_010392
Homolog/Ortholog E-Value: 8.01e-141
Locus 5: SEETMRM13676_RS16330 (Region 1)
Locus: SEETMRM13676_RS16330ORF Start: 4246
ORF Stop: 4473
Strand: Backward
Protein Sequence: MPKFNRQRIIKHVKSVFLAMILILPSSLYSALTIAADSQDHKKEETIKPMPQKWCNLWPAGIPFPEDWFKMCRGY
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SEETMRM13676_RS16330, PagK-like protein, phage(gi169257211), PHAGE_Phage_Gifsy_1_NC_010392
Homolog/Ortholog E-Value: 9.51e-51
Locus 6: SEETMRM13676_RS16335 (Region 1)
Locus: SEETMRM13676_RS16335ORF Start: 4580
ORF Stop: 4792
Strand: Forward
Protein Sequence: MISAIIFSFQCKLIHMRVSSCAIQILTGSHPLGAQAGRLIRAGVPRQQVTIIYDAGLSTLYRKFPVSKLA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: SEETMRM13676_RS16335, hypothetical protein, phage(gi100035), PHAGE_Escher_500465_1_NC_049342
Homolog/Ortholog E-Value: 2.32e-08
Locus 7: SEETMRM13676_RS16340 (Region 1)
Locus: SEETMRM13676_RS16340ORF Start: 4828
ORF Stop: 4920
Strand: Forward
Protein Sequence: GQGIPQQWAMKREILSLRYTTRYSELLRVK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SEETMRM13676_RS16340, error-prone lesion bypass DNA polymerase V, phage(gi399528790), PHAGE_Salmon_vB_SosS_Oslo_NC_018279
Homolog/Ortholog E-Value: 7.48e-09
Locus 8: SEETMRM13676_RS16345 (Region 1)
Locus: SEETMRM13676_RS16345ORF Start: 5284
ORF Stop: 5470
Strand: Backward
Protein Sequence: MPIIAPIPRTERRLMQKTIHKTRDKNHARRLTAMLMLQPGRQYRPRCQNALLRPFTHWTLDC
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: SEETMRM13676_RS16345, putative transposase, phage(gi26246170), PROPHAGE_Escher_CFT073
Homolog/Ortholog E-Value: 3.23e-14
Locus 9: SEETMRM13676_RS16350 (Region 1)
Locus: SEETMRM13676_RS16350ORF Start: 5545
ORF Stop: 5664
Strand: Forward
Protein Sequence: MIYYSAQLFITLCFIHPGKPLQNACIERYNRTVGYDWLG
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: SEETMRM13676_RS16350, ISxcd1 transposase, phage(gi21231544), PROPHAGE_Xantho_33913
Homolog/Ortholog E-Value: 8.90e-07
Locus 10: SEETMRM13676_RS16360 (Region 1)
Locus: SEETMRM13676_RS16360ORF Start: 6377
ORF Stop: 6514
Strand: Backward
Protein Sequence: MKNSIFLPLLLVLSATTFSALVMAASHSPHQIIQNIFPVAGRQIS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: SEETMRM13676_RS16360, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 11: SEETMRM13676_RS16365 (Region 1)
Locus: SEETMRM13676_RS16365ORF Start: 6993
ORF Stop: 8486
Strand: Backward
Protein Sequence: MTYRLKKRMKIGFQPAILQYAYTSNEATSNLELLNKWRIESPDIEKEERNSIYDKIIEANHTGSLSITAHHVTSIPVFPDNLSELNLSSCYTLESIPNLPDGLKSLTISGNQTIKISYFPDSLESLSIDMQAYEENYTFPALPYGLKSFTACYGKFLPPLPPHLSSLSLQNFSEILCAELPYKLDKLDLQNCPFLPLMKMLPEELKELSIELIRTVPGTVIDDILPDKLKKLSINFCDNIKLPVKLPVNLKSINLSSRTPIAWEIPTCNLPAHIDISTDGYVKLNPEFLTRSDITFSNKPAGDVLSFQPGDVVYGLCKARDRVNTLVNSLYYFSKKDIIIQNTLTDAVWDRKNRAVFNKDEKIAERLNDVQRGIFFREFLSQHKKYNITEDKYSDLSNEECWIKTSKAGLEFQTRLRERSVIFVIDNLVDAISDIANKTGKHGNSITAHELRWVYRNRHDDLVKQNVKFFLNGEAISHEDVFSLVGWDKYKPKNRNR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SEETMRM13676_RS16365, leucine-rich repeat protein, phage(gi169257209), PHAGE_Phage_Gifsy_1_NC_010392
Homolog/Ortholog E-Value: 0.0
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
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