Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1798959159 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1798959159.PHASTER.zip
gi|00000000|ref|NZ_WXYR01000036.1| Salmonella enterica subsp. enterica serovar Typhimurium strain 8145, gc%: 47.64%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.1Kb | incomplete | 50 | 14 | 1-8145 info_outline | PHAGE_Entero_mEp237_NC_019704(7) | 47.64% | Show info_outline |
Region DNA
>1 1-8145 AGTTGCAGTTTTCATACTGATTCTGGAGACGGGTAATTAATTCTTTTTCAAGTGCAGGAA CGGCACCTTCCGGAAGCTGTTTTGTCCGGCTGATAACAAGTTCAATTCTCATAATTCCCT CTACATTCAACCACTGTATATAAACACAGTATACCTGTTAGAAAGAATATTCAAGGGGTG AATAGCACTTTTTGCAAAAGCTAGCATGTTGTTTCATATCAGATTTTAGGCGGTAAAACC CGCCCGTTACCGAGGAATCCCCAGCAATGGGTGGGTTGAATTGATGGGATTTTTTTAAGT TGCGATATCTTTGGCCTGACAAGGATGGATCTATAATACTTAACAACTATGGTTTGGGGT TTTTGTAATTCTACGAATTATGTTGTTTTTTAGCTTCAGCTTTCCATTCATCAAAGGCAG TGTCTTTGTTCATGGTGCTGATATTGACCTTACGGTCAATATCATATACACGCCACTCAC CGTTAGGCCTCTCTTCGCATCTAACTAAGTATGAATTACCATTAACATCTATGCGTCTGT CTATTTGCATGAACATTTTCAATTTTTGAATCCTCTTTAATATGGTGTTTTTGCCATTTC AGTAGCTTACTATTGATGAAGCGTTATTATTCACACTTCATTAATGCAAGCATCTTTATG CTATGCTACTAATTTAGCAATTGATATTCACCTTTATCGCGTACACCTTTACCGGTTCAT CACCAAAGTGCGGATGCGTTATTGTTTTCACTTCATAGCCACCATACGGGACGTCAATTC TACGGCTGGAATCGTCGCGCTTCGGATATCCCTTTGTGATAATCAGGCGGTCATACTCCC TGAACATAATTCGCTTATTCCAGTAGTCATTACACAGGCGATACTCTTCCGTTTTCTCTC CGCGAATCATGGCATCGAAGTATTCACCTTTGACGGCAAGTTGCAGGTTAGCCACGGTTA AACTCCTGCGGCGGTTCTGGTAGCGGCATCCAGTGGGTTACTTTTCCAGACATCATTTCA CCGCCCCATTTATCGCCATTCCATGAGCAGTTCCACTGGTAATGGCTTTTCCCGAGGTCA TTTTGTTCTTCGACATAGCACCAATAGCGCCCGATTTCATCCGGCATCCGCTCACTACAG CTTATCCAACCATCCGGAATTACCGGCGCTGACTGCTCTTTAATATGCAGTCGTGGCTCG CCGTCTTTCGGCTCAGGCCACTGGCGAGACTTATTTATCTCCAGCTTTTCTATCATCGCC CTGGTAATGAATTCGTCAGAAATACCCATACGCCTTTGAGCATCCCACAATAAAAACTGC ATATCAGCCCATTCAAGCGGATCGGATGGGTCGGCAGCGGCCTCTAATGCTTCTTTCGAG AGGTGCTTCAGTGGTCCTACTGGACCGACATCGCCGAACGTCTTATCTGACCACTCGGCG TGCTCGCGGCGAATACGTTCGCGTTCCAGCGATGCAAGCGCACGCTTCAGCACAATAAGA ATTTTGGCGTCGTCATCGTCGAGGCCAAACGGAATATCGTCGCGAGTGTTTTCAAATTCA GCGATGGTTTGCTGTAGCCATTCTTTGGTAATAGTGGTCATGGTTAATCCTTCACAAAAA TAATCCAGTGGGTTTTGTCGTTCTTCCCGGTTCGCTGGCCAATAATTGGTTTTACGTCCG TCAGCGCCAGAATTTGGCTAACCGGAATCTGCGTTTCGTTCCATTTGAAAATGAGTACAC CGTGTGGCCGCAATACACGGAACGCCTCTTTGAACCCGGCTCGCAGGTCAGAACGCCATG TTTTTTTGTTCAATCGCCCGTATTTTTTACCCATCCAGGCAGTTTGTCCGACACGTTCCA GATGCGGCGGGTCAAACACCACAACCGGAAACGACGAATCAGCAAACGGTAGCGCGCGAA AATCAGCAATGAGGTCAGGACTGATAACCAGACGGCGACCGTCGCACAATGTGTGTTCTT CGGCGCGGATATCGGCGAACACGGCGCGGGAATCCTGTTTGTTGAACCAGAACATGCGAG AGCCGCAGCACACGTCTAAAATGGTTTCTGCCATCTCATTCCACCTTCACACCAATGTCA GTGCGTGTGCTATATGCAGACATGCATTGCGCGAACCCGGATTGGTCATCTGTCTGCCCA TAGCTGAACCCAGCTTTCAGGCCGTCACGGAATGCGCCATCCTGCAACCTGTCGGCAGTT TCAAGCTTCGCCTCCAGTTCTACTATGCGCTGGCGGAACTGGATAACGTCATCTGTCTGG TTGCGCCATAGCTCGCACGCCAACTCAATTTCATCTATCGCATTCTCGAAGCTAAACCAG TTGCTCCATTCTGGTGCCTGGCCCATAACGGCTTTGTAGGCATCGTTCAGGGCGGATTCC GCGTCATCGCGTTCGCTGATAAGCTGAGTCTCGCTGCGTTCGAGTTCTGCTATGCGCTTA CTCCCATCAGCAATAACGCCCTCGTAATACTCACGCTGTTCAGCAATACGCTTCTCTGCA GCTTCCAGTTGCTCCCGCGCCTGTCGCATATCATCACGCAGCGCAAGTGCCACGGCCTCT ATTGCGTCTTTTTCCCGTTGGAGCTGAAGATTCTCATCCAGCAGCGCCAGCACAACCTGC GGTGTAACCTTCACACGAAACGCAAGCAATTTCTGCGGCGTTGCTACTGTCTCTATTGCT ACAGCCGCTTCACGCAGCGCCTGTTTGTCGATGTTGCTCATTGGGCGGACTCCTGTTAAA TCAGACCGGCGTCTTTGCGTTGTTTGTATTTCGCCATTAACATCTCGGCTGGCGTTGGAC CGCGATCCCGTGACGGCGCGGCTAAAGCGCGACGAACAGGCGGTATGGGTTTACCTGCAA GAACTCGCTTTTCCCACTCATGCAGAATGTCGCCAGCGGCCCGGATAAGTTCTTTTTCAC TGAGTTGCCCTTCCATTCCCCGGCGGCGCAGCTCCAGGCAGACGTGGTAATACAGCGGAT TTTTATCTCTCCAGGGGAACTGCTCACTGGTCGGATAACGGAAAACAAGCTTCCGCCAAC GCCAGTATTCGCCCATGATGTCGTCAACACTGACCCCGAGCGCTCCACTCCCCTCACGGC ACCACGCTACAAACTGTCCCGGCGATGGCAGAAACGGACGTTCCTGACGGCGGGCGACAC GCATTCCGGCAGCTACTTGTTCCATGGTGGTAATGCCATTCTCACGGAAAGCCAGAACCC ACTGGCGCCGGATTTCGTTCATCTCGGCCTGGCTGCGATTAGCCGTGGTAGCAGGGAACG CGGCCATAAGCTGACTGAACACGTTGTTGATGACCTTAGCAACCTGCTCAACTTGCGGTT TATCGTCATGCTGTTCCGGCATGTTGTTGGCAATACGGCGCATCTGCTCACGGTCAAAAT TAACCATCTGCGCAGCAATGTTTTTCATAGCTCCACTCCGTAAATCCAGTCAGTGTTATT CAGGTCAAGTTTTGGCTTAGAGGCAGTTGTGCCAGTCTGTTGCTTGTTGCGGTTGATATC GAGTTGAGTCCACTTTTCGCGGAGCTTTGCCGGGCTAATGACGTTGCCAGCCCAGAAGCT GTCATGGCACGCCCAGCGAAACAGCACGCACATGTCGCGATGTGTCCGTCCGTCACATTC ACGCATCAGGCGTATATCGTTAGCCCATCCTGCCAGGTTAGGTTTTCTGGCTGATGGAGA AATGGTTTTTATCAGGTCAAACATCCACTCGGCAGCAGTTAGGTCTTCAGCAGTTCCCCA CTTGTTGCCTCTCTGAATCGCTGCTTCGGGTTTTAGAACATGAGGTTTCTTTGCTGGCTT GTCAGAGGATTCGTCAGAATTCTCGGACGTAGATCTTTTAATATTGTCTTTTGTTAGTTT GTCTTTTGTGGTTAGCAACTTCTGCTTAGGTGCGTTAGCAACTTCCGCTAAGGTTTTCTT AGCAGGTTTAGCTAATGTTTTGCAGAATCCGTTATTTTTAGTTTGCCACTCGGAAATATG GATATTCATACCAACCCTGCGGCCTTCCTGAATCAGTACCTTCTTCCTGATCAGACTGTT TTTTGCTGTCGAGCAATGGGTATGATGCTTCTGAATCATCTCCTCTAGCTGCTCGTTGCT GATCCAGTCCATTTTCTTGTTGTATCCATACGTTTTGCGCCATACGGCCATCAGGATGCA CAGCTCAGTCTCCGGCAAACCAGAACACATCACGGCATCCAGAAGTTCATTTGCCAGGCG CGTATAGCCATCATCGAGATCTGCCACGCGCGGCTCCTTAGGTGCCACGTCAGGCACAGG AAAATTGATTACTTTGGCAGTGTTTGCCATAATTACTCCTGTGAATTGATCCAGTTAATT CCACCAGAAAGCCGTTGGTGTTCGAGCACCGCGGCTTTCGCCTTTTTAGTTGCTGCCATT TTCAGTCCCACCCCAGCGCATCCGGCCTGGCTCGTTCAGCCTTTAGCCCGGCATCAGCGA GAATCTCTACAGCTGTGAGATAGTTTCTGGATACCAGTACCGCTTCCGGTGGCGCGGCCT GAATCCCAAGAAAAGCCAGCTCTTTCGCCATGTTGCAGAAATACCCCTCAGCTTTACGCC TGCTGACTGTCGACTCGCTGATGCCCATATGCTCGGCGTATGATTTCTGACCTACCGATG CAAGCCGGTTGAGCAGGACACTCTCTATCTCAATCGGGTTGATTTCTGGTGGGTCTAACT TTCGTGCAATTGCGTTCTCCATGGGTAAATATCCTCTATGGTTATTTGGCTGACGCCTCT TGGCTTGGTAATGCATCTGTTGGATTTGGATACAAGTCAGGCCGTAACTCATGTGGCGTA ACACCTGTAAGTTCGAAAACTGAACGAATGTGATCGGGGGGAATCCCGGTCTTTTTCCAG TTGGAAATTGTCATTTTTGAAAATCCAAGCGCTCTTCCAAGAGCAGCCCCTGTTCCAAAT TTTTGAATTGCTTTTTCAATACCAGTCATAGGACCTCCTTAGATGACAAAAGTAAAGCAT CATTTTACCAACAAGTCAAACAACACATGCCTACCTACAAGTAAAGCAATCATTTACAAT GAGGTGATGAGCGATAACACACTGACGAATGGCCTGATCTCCAGGCTGGCAGAGTTAAAT AAGAAGGGTTTCTCTAAAACAGAGATGGCCAGGGTAGCTGGTGTCAGCAAGCAAGCAGTT TCCAGTTGGTTCAAAACAGGAAGAATTAGTAAAAGCTCCGCATTAGCTATCGCTGATGCT GCTGGCGTATCAGTTCCGTGGCTGCTTGGTGAGGATGTCGGAGAGAAAGACGGACTTAAA CCTGACGAACAGCGCCTGCTTGAGCTCTATCGCCAGTTGCCCGAGGAAGAGCAGCAGAAC ATGATGAGAGTTTTCTCTCTGAGGCTGAAAGAGCTGGACGAGTTGTACGCGAAGTACATG AGCCGCAGGATAAAAGGTGAAGGCGCATAATCACTTTTAAAATAAAGAGTTAATATAAAT TAGATTTTATTTCGCTCTTTTCCCGGTCCGGTTACCAGCCTTCATCAAGTGCCTAGACGG GCATTTTCATAATGTTATTTTTTATAACTGAATCATAGACAAATACACACAGGATACGAT AATGGATAATGGACGTGTTGAAGCTACTGATAGGCCAACAGAAATGATTGCCAGCAATAC AAAATACCTAGTTTGGAACAACAAAGGGGGCGTGGGAAAAACTTTCCTGACGTACAACCT TGCAGTGGAGTTCGCAATTTCCCATCCAGACCAAGATGTTGTGGTTATCGACGCTTGTCC GCAATCAAACGTTTCTGAAATTATCCTTGGAGGCAATGGTACTGGTGAAGAAAACCTAAA CTACCTTCGTGATAGGAATGTGACTATAGCTGGCTATATCAAAGAACGATTCAGTAAATC TCCGTTATCTCGTTTAGGAAATGAATCCTCTTACTTCGTTCGAGCACATACTGTTAACTC GAAGATGCCTGAGAATTTATACATCCTTCCAGGTGATGTCGATCTTGATATTTGTTCTCG TCTGATATCTCACATTGGCTCATCACCAGTTAAAGAAGCATGGAAGAAAAGTCGTTCTTT GTTAGTGGACTTAATCGCATCACTCGAAGCCGATAAGAGTATTTCTGACAGGGCAAAAAC TTTCTTTATTGACTGCAACCCAAGCTTCGCAAGCTACACTGAGTTAGGTGTGGTCGCCGC AAACAGAATAATCATTCCTTGCACAGCAGATGCTGCATCAATTCGGGGCATAAAAAACCT TGTTAAGCTCATTTACGGTGTATCAATAGACAAGTCAGAACAAGACGAGATGTTCCTTGA TTTCAATAAAGAAGCTATCCAAAACCTTATTGAGCTCCCTAAGTTACATCTTTTTGTACA GAATCGTTCCCGTACTAACGAAAGTGATGCAGCTAAGGCATTTAAATCACATGCAGAAGA GATCAAACGAATCACCGATGATCTCTTGAAAACTCACCCTCATCTATTCACTAGCGGAAA TCTTTCTGAAAGAGTTCAAAATGTGAAGGATGGCAACACGCTTGCAGCTATTATTAACCA TGAAGGGTGTCCGTTAAGTAAACTACAGCACAAAAGCTATACCATCTATGGTATGGCTAC TCAAGCCAACAAAGCTCAGATTGAAGCGCTAGAATCTGACGTATCTACAGTTGTTAAATG TTTATAATTTTGGATAACTAATTCAGGATTGAATATTCAAAATACAGTGGAAATGCAATA GCGGCTTTACTTACACGGCAACAATAATTTAACCCGGCCACTGTGCCGGGTTTTTTATTG CCCTTTTCTTACCATAGCGGCCGCATCCCGCAATACACCCTTGTGAATGACGTTTCCCAC TGCTCTGCGCTTAGCCTCCAGACTATCTACAATCGCATCGCGGCTGATCACTACGCCGTC GATTATCAATTCGACCACTGCGCCGCCAATCTCACCCGCAATGAATGCTGCACGGTCTTC TTCCAGCTCGTCACGATCCATAACCACCCCTTACTGATGTTTTTTTAATCATATACATAT TGAGCTGCTAAACATAGTTCAAAAATGAACACGCTTATTGTACAGCTTTGCTTTACACTT TAATTCCGCAAAGGTTGACTGAAAAGTAAAATGATGCTTTACTTATTCCATAGCAACAAC GAACCACCCAGGCAGGACGCCCACGAATGTAGCCGTCCGGGGCATACGAAGACCGGAATG AGGTGGAAAAGTTAACGCGCAGAAGGTGATAAACGTTCCGCTGGCCGGCGATAAGGCAAA CGAGGGTGAGGATGATTGATTTCGCACGTAAACCAGCTCGACAGCAGGCCGTCCTGCTTA ACCGGATTGAGGTTTTAATCCGCCGCCTCTGCTACCTGCTGGCGCAGAAAGGAGATCCGG ATGCATAACCAAAAGACATGCGCTTACCACCTGTGTGGAAAGACGATTGAGCAAGGCAAA GAAGTAAAAAACGAGCTGACGCTGATTCGCGGCGCGCAGCTGACACATGAAGAGCGCGAT TACTGCTCTGTACGTTGTGCCTCATACGACCAGATGGCGCACGAAAGTTAACGTAAAAGC CGCGCAAGGCGGCCCATACGTCCGGTGACACCGACCAAAGTTCCACCGGAAAACTACACA AAAAACCAAAGTTCACCCAATGGGCGCTATCTCTGGCCCGGGGATCTTACATCTAAAAAA GAGGATCTCACATGGAATTTTTCTATGTAGTAAAAGCTACGCAGAAATCCGGAAAGCAAG ATGCGACGGTCTGGTTCACTGCAAAATCAGAAGCGCGCGCCAACCTTATGCTGGATGTCG TTCTGGAAGATGCTGAAATTGAAACCGGCCGCGGTAAGGATTATGCAAGGCCGATCCGCA CCAATTTTCCGGTAGTCAACGAGCTGCCGCCGGAAGGTGAAATAAGTTTTACCTTCACTA ATTATTATCGCCTCGGTGAAGATGGCATGACTTGGGAACAAATCCCCGGCGTCACCCTGC CATCATCTGAAGCCGCCGCCGCGGCGCGCCAGCATATCGTCGATGGTGTTGATACCGAAA CAGGCGAAGTGCTGGAAGACCACACCGAAAATTTTGGTAACGAAA
Region Details
| Region | 1 |
| Region Length | 8.1Kb |
| Completeness(score) | incomplete(50) |
| Specific Keyword | tail,capsid |
| Region Position | 1-8145 |
| # tRNA | 0 |
| # Total Proteins | 14 |
| # Phage Hit Proteins | 14 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 8 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_mEp237_NC_019704(7) PHAGE_Salmon_SEN34_NC_028699(7) PHAGE_Salmon_SPN3UB_NC_019545(6) PHAGE_Phage_Gifsy_2_NC_010393(5) PHAGE_Phage_Gifsy_1_NC_010392(5) PHAGE_Entero_HK225_NC_019717(4) PHAGE_Escher_HK639_NC_016158(2) PHAGE_Entero_UAB_Phi20_NC_031019(2) PHAGE_Salmon_BTP1_NC_042346(2) PHAGE_Entero_phi80_NC_021190(1) PHAGE_Salmon_epsilon15_NC_004775(1) PHAGE_Entero_SfI_NC_027339(1) PHAGE_Entero_lambda_NC_001416(1) PHAGE_Erwini_vB_EhrS_49_NC_048197(1) PHAGE_Entero_HK022_NC_002166(1) PHAGE_Salmon_epsilon34_NC_011976(1) PHAGE_Entero_ST104_NC_005841(1) PHAGE_Lister_A118_NC_003216(1) PHAGE_Pseudo_phi297_NC_016762(1) PHAGE_Entero_933W_NC_000924(1) PHAGE_Entero_P22_NC_002371(1) PHAGE_Salmon_SE1_NC_011802(1) PHAGE_Salmon_ST160_NC_014900(1) PHAGE_Entero_DE3_NC_042057(1) PHAGE_Gordon_Nymphadora_NC_031061(1) PHAGE_Ralsto_RsoM1USA_NC_049432(1) PHAGE_Salmon_vB_SemP_Emek_NC_018275(1) PHAGE_Entero_BP_4795_NC_004813(1) PHAGE_Escher_phiV10_NC_007804(1) PHAGE_Pectob_ZF40_NC_019522(1) |
| First Most Common Phage # | 6 |
| First Most Common Phage % | 50% |
| GC % | 47.64% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NZ_WXYR01000036.1| Salmonella enterica subsp. enterica serovar Typhimurium strain 8145, gc%: 47.64%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 14 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(1..112) | PHAGE_Salmon_SEN34_NC_028699: DNA-damage-inducible protein I; SEETMRM13674_RS23525; phage(gi966201471) | 1.95e-11 | Showinfo_outline |
| 2 | complement(674..955) | PHAGE_Escher_phiV10_NC_007804: hypothetical protein; SEETMRM13674_RS23530; phage(gi89152468) | 7.98e-61 | Showinfo_outline |
| 3 | complement(948..1601) | PHAGE_Entero_UAB_Phi20_NC_031019: minor tail protein; SEETMRM13674_RS23535; phage(gi100055) | 5.30e-66 | Showinfo_outline |
| 4 | complement(1604..2074) | PHAGE_Gordon_Nymphadora_NC_031061: capsid maturation protease; SEETMRM13674_RS23540; phage(gi100067) | 1.12e-67 | Showinfo_outline |
| 5 | complement(2076..2741) | PHAGE_Entero_UAB_Phi20_NC_031019: tail length tape-measure protein; SEETMRM13674_RS23545; phage(gi100057) | 3.23e-29 | Showinfo_outline |
| 6 | complement(2756..3448) | PHAGE_Salmon_SEN34_NC_028699: replication protein P; SEETMRM13674_RS23550; phage(gi966201464) | 8.30e-82 | Showinfo_outline |
| 7 | complement(3445..4350) | PHAGE_Salmon_SEN34_NC_028699: replication protein O; SEETMRM13674_RS23555; phage(gi966201463) | 0.0 | Showinfo_outline |
| 8 | complement(4442..4816) | PHAGE_Salmon_SEN34_NC_028699: putative DNA-binding protein; SEETMRM13674_RS23560; phage(gi966201462) | 5.53e-72 | Showinfo_outline |
| 9 | complement(4782..5009) | PHAGE_Salmon_SEN34_NC_028699: regulatory protein; SEETMRM13674_RS23565; phage(gi966201461) | 2.18e-25 | Showinfo_outline |
| 10 | 5023..5490 | PHAGE_Salmon_SEN34_NC_028699: putative DNA-binding protein; SEETMRM13674_RS23570; phage(gi966201460) | 2.02e-61 | Showinfo_outline |
| 11 | 5642..6727 | PHAGE_Ralsto_RsoM1USA_NC_049432: minor tail protein; SEETMRM13674_RS23575; phage(gi100055) | 6.61e-10 | Showinfo_outline |
| 12 | complement(6835..7041) | PHAGE_Entero_HK225_NC_019717: hypothetical protein; SEETMRM13674_RS23580; phage(gi428782417) | 7.51e-25 | Showinfo_outline |
| 13 | 7441..7611 | PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; SEETMRM13674_RS24150; phage(gi169257260) | 7.35e-14 | Showinfo_outline |
| 14 | 7752..8145 | PHAGE_Salmon_SPN3UB_NC_019545: RecE; SEETMRM13674_RS23585; phage(gi423262421) | 3.15e-49 | Showinfo_outline |
Sequence
>complement(1..112)
SalmonellaentericasubspentericaserovarTyphimuriumMRIELVISRTKQLPEGAVPALEKELITRLQNQYENCNT
Sequence
>complement(674..955)
SalmonellaentericasubspentericaserovarTyphimuriumMANLQLAVKGEYFDAMIRGEKTEEYRLCNDYWNKRIMFREYDRLIITKGYPKRDDSSRRIDVPYGGYEVKTITHPHFGDEPVKVYAIKVNINC
Sequence
>complement(948..1601)
SalmonellaentericasubspentericaserovarTyphimuriumMTTITKEWLQQTIAEFENTRDDIPFGLDDDDAKILIVLKRALASLERERIRREHAEWSDKTFGDVGPVGPLKHLSKEALEAAADPSDPLEWADMQFLLWDAQRRMGISDEFITRAMIEKLEINKSRQWPEPKDGEPRLHIKEQSAPVIPDGWISCSERMPDEIGRYWCYVEEQNDLGKSHYQWNCSWNGDKWGGEMMSGKVTHWMPLPEPPQEFNRG
Sequence
>complement(1604..2074)
SalmonellaentericasubspentericaserovarTyphimuriumMAETILDVCCGSRMFWFNKQDSRAVFADIRAEEHTLCDGRRLVISPDLIADFRALPFADSSFPVVVFDPPHLERVGQTAWMGKKYGRLNKKTWRSDLRAGFKEAFRVLRPHGVLIFKWNETQIPVSQILALTDVKPIIGQRTGKNDKTHWIIFVKD
Sequence
>complement(2076..2741)
SalmonellaentericasubspentericaserovarTyphimuriumMSNIDKQALREAAVAIETVATPQKLLAFRVKVTPQVVLALLDENLQLQREKDAIEAVALALRDDMRQAREQLEAAEKRIAEQREYYEGVIADGSKRIAELERSETQLISERDDAESALNDAYKAVMGQAPEWSNWFSFENAIDEIELACELWRNQTDDVIQFRQRIVELEAKLETADRLQDGAFRDGLKAGFSYGQTDDQSGFAQCMSAYSTRTDIGVKVE
Sequence
>complement(2756..3448)
SalmonellaentericasubspentericaserovarTyphimuriumMKNIAAQMVNFDREQMRRIANNMPEQHDDKPQVEQVAKVINNVFSQLMAAFPATTANRSQAEMNEIRRQWVLAFRENGITTMEQVAAGMRVARRQERPFLPSPGQFVAWCREGSGALGVSVDDIMGEYWRWRKLVFRYPTSEQFPWRDKNPLYYHVCLELRRRGMEGQLSEKELIRAAGDILHEWEKRVLAGKPIPPVRRALAAPSRDRGPTPAEMLMAKYKQRKDAGLI
Sequence
>complement(3445..4350)
SalmonellaentericasubspentericaserovarTyphimuriumMANTAKVINFPVPDVAPKEPRVADLDDGYTRLANELLDAVMCSGLPETELCILMAVWRKTYGYNKKMDWISNEQLEEMIQKHHTHCSTAKNSLIRKKVLIQEGRRVGMNIHISEWQTKNNGFCKTLAKPAKKTLAEVANAPKQKLLTTKDKLTKDNIKRSTSENSDESSDKPAKKPHVLKPEAAIQRGNKWGTAEDLTAAEWMFDLIKTISPSARKPNLAGWANDIRLMRECDGRTHRDMCVLFRWACHDSFWAGNVISPAKLREKWTQLDINRNKQQTGTTASKPKLDLNNTDWIYGVEL
Sequence
>complement(4442..4816)
SalmonellaentericasubspentericaserovarTyphimuriumMHYQAKRRQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNRLASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTAVEILADAGLKAERARPDALGWD
Sequence
>complement(4782..5009)
SalmonellaentericasubspentericaserovarTyphimuriumMTGIEKAIQKFGTGAALGRALGFSKMTISNWKKTGIPPDHIRSVFELTGVTPHELRPDLYPNPTDALPSQEASAK
Sequence
>5023..5490
SalmonellaentericasubspentericaserovarTyphimuriumMTKVKHHFTNKSNNTCLPTSKAIIYNEVMSDNTLTNGLISRLAELNKKGFSKTEMARVAGVSKQAVSSWFKTGRISKSSALAIADAAGVSVPWLLGEDVGEKDGLKPDEQRLLELYRQLPEEEQQNMMRVFSLRLKELDELYAKYMSRRIKGEGA
Sequence
>5642..6727
SalmonellaentericasubspentericaserovarTyphimuriumMDNGRVEATDRPTEMIASNTKYLVWNNKGGVGKTFLTYNLAVEFAISHPDQDVVVIDACPQSNVSEIILGGNGTGEENLNYLRDRNVTIAGYIKERFSKSPLSRLGNESSYFVRAHTVNSKMPENLYILPGDVDLDICSRLISHIGSSPVKEAWKKSRSLLVDLIASLEADKSISDRAKTFFIDCNPSFASYTELGVVAANRIIIPCTADAASIRGIKNLVKLIYGVSIDKSEQDEMFLDFNKEAIQNLIELPKLHLFVQNRSRTNESDAAKAFKSHAEEIKRITDDLLKTHPHLFTSGNLSERVQNVKDGNTLAAIINHEGCPLSKLQHKSYTIYGMATQANKAQIEALESDVSTVVKCL
Sequence
>complement(6835..7041)
SalmonellaentericasubspentericaserovarTyphimuriumMDRDELEEDRAAFIAGEIGGAVVELIIDGVVISRDAIVDSLEAKRRAVGNVIHKGVLRDAAAMVRKGQ
Sequence
>7441..7611
SalmonellaentericasubspentericaserovarTyphimuriumMHNQKTCAYHLCGKTIEQGKEVKNELTLIRGAQLTHEERDYCSVRCASYDQMAHES
Sequence
>7752..8145
SalmonellaentericasubspentericaserovarTyphimuriumMEFFYVVKATQKSGKQDATVWFTAKSEARANLMLDVVLEDAEIETGRGKDYARPIRTNFPVVNELPPEGEISFTFTNYYRLGEDGMTWEQIPGVTLPSSEAAAAARQHIVDGVDTETGEVLEDHTENFGNEA
Salmonella enterica subsp
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 8145 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: SEETMRM13674_RS23525 (Region 1)
Locus: SEETMRM13674_RS23525ORF Start: 1
ORF Stop: 112
Strand: Backward
Protein Sequence: MRIELVISRTKQLPEGAVPALEKELITRLQNQYENCNT
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SEETMRM13674_RS23525, DNA-damage-inducible protein I, phage(gi966201471), PHAGE_Salmon_SEN34_NC_028699
Homolog/Ortholog E-Value: 1.95e-11
Locus 2: SEETMRM13674_RS23530 (Region 1)
Locus: SEETMRM13674_RS23530ORF Start: 674
ORF Stop: 955
Strand: Backward
Protein Sequence: MANLQLAVKGEYFDAMIRGEKTEEYRLCNDYWNKRIMFREYDRLIITKGYPKRDDSSRRIDVPYGGYEVKTITHPHFGDEPVKVYAIKVNINC
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: SEETMRM13674_RS23530, hypothetical protein, phage(gi89152468), PHAGE_Escher_phiV10_NC_007804
Homolog/Ortholog E-Value: 7.98e-61
Locus 3: SEETMRM13674_RS23535 (Region 1)
Locus: SEETMRM13674_RS23535ORF Start: 948
ORF Stop: 1601
Strand: Backward
Protein Sequence: MTTITKEWLQQTIAEFENTRDDIPFGLDDDDAKILIVLKRALASLERERIRREHAEWSDKTFGDVGPVGPLKHLSKEALEAAADPSDPLEWADMQFLLWDAQRRMGISDEFITRAMIEKLEINKSRQWPEPKDGEPRLHIKEQSAPVIPDGWISCSERMPDEIGRYWCYVEEQNDLGKSHYQWNCSWNGDKWGGEMMSGKVTHWMPLPEPPQEFNRG
Homolog/Ortholog Species: Tail protein
Homolog/Ortholog Protein: SEETMRM13674_RS23535, minor tail protein, phage(gi100055), PHAGE_Entero_UAB_Phi20_NC_031019
Homolog/Ortholog E-Value: 5.30e-66
Locus 4: SEETMRM13674_RS23540 (Region 1)
Locus: SEETMRM13674_RS23540ORF Start: 1604
ORF Stop: 2074
Strand: Backward
Protein Sequence: MAETILDVCCGSRMFWFNKQDSRAVFADIRAEEHTLCDGRRLVISPDLIADFRALPFADSSFPVVVFDPPHLERVGQTAWMGKKYGRLNKKTWRSDLRAGFKEAFRVLRPHGVLIFKWNETQIPVSQILALTDVKPIIGQRTGKNDKTHWIIFVKD
Homolog/Ortholog Species: Head protein
Homolog/Ortholog Protein: SEETMRM13674_RS23540, capsid maturation protease, phage(gi100067), PHAGE_Gordon_Nymphadora_NC_031061
Homolog/Ortholog E-Value: 1.12e-67
Locus 5: SEETMRM13674_RS23545 (Region 1)
Locus: SEETMRM13674_RS23545ORF Start: 2076
ORF Stop: 2741
Strand: Backward
Protein Sequence: MSNIDKQALREAAVAIETVATPQKLLAFRVKVTPQVVLALLDENLQLQREKDAIEAVALALRDDMRQAREQLEAAEKRIAEQREYYEGVIADGSKRIAELERSETQLISERDDAESALNDAYKAVMGQAPEWSNWFSFENAIDEIELACELWRNQTDDVIQFRQRIVELEAKLETADRLQDGAFRDGLKAGFSYGQTDDQSGFAQCMSAYSTRTDIGVKVE
Homolog/Ortholog Species: Tail protein
Homolog/Ortholog Protein: SEETMRM13674_RS23545, tail length tape-measure protein, phage(gi100057), PHAGE_Entero_UAB_Phi20_NC_031019
Homolog/Ortholog E-Value: 3.23e-29
Locus 6: SEETMRM13674_RS23550 (Region 1)
Locus: SEETMRM13674_RS23550ORF Start: 2756
ORF Stop: 3448
Strand: Backward
Protein Sequence: MKNIAAQMVNFDREQMRRIANNMPEQHDDKPQVEQVAKVINNVFSQLMAAFPATTANRSQAEMNEIRRQWVLAFRENGITTMEQVAAGMRVARRQERPFLPSPGQFVAWCREGSGALGVSVDDIMGEYWRWRKLVFRYPTSEQFPWRDKNPLYYHVCLELRRRGMEGQLSEKELIRAAGDILHEWEKRVLAGKPIPPVRRALAAPSRDRGPTPAEMLMAKYKQRKDAGLI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SEETMRM13674_RS23550, replication protein P, phage(gi966201464), PHAGE_Salmon_SEN34_NC_028699
Homolog/Ortholog E-Value: 8.30e-82
Locus 7: SEETMRM13674_RS23555 (Region 1)
Locus: SEETMRM13674_RS23555ORF Start: 3445
ORF Stop: 4350
Strand: Backward
Protein Sequence: MANTAKVINFPVPDVAPKEPRVADLDDGYTRLANELLDAVMCSGLPETELCILMAVWRKTYGYNKKMDWISNEQLEEMIQKHHTHCSTAKNSLIRKKVLIQEGRRVGMNIHISEWQTKNNGFCKTLAKPAKKTLAEVANAPKQKLLTTKDKLTKDNIKRSTSENSDESSDKPAKKPHVLKPEAAIQRGNKWGTAEDLTAAEWMFDLIKTISPSARKPNLAGWANDIRLMRECDGRTHRDMCVLFRWACHDSFWAGNVISPAKLREKWTQLDINRNKQQTGTTASKPKLDLNNTDWIYGVEL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SEETMRM13674_RS23555, replication protein O, phage(gi966201463), PHAGE_Salmon_SEN34_NC_028699
Homolog/Ortholog E-Value: 0.0
Locus 8: SEETMRM13674_RS23560 (Region 1)
Locus: SEETMRM13674_RS23560ORF Start: 4442
ORF Stop: 4816
Strand: Backward
Protein Sequence: MHYQAKRRQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNRLASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTAVEILADAGLKAERARPDALGWD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SEETMRM13674_RS23560, putative DNA-binding protein, phage(gi966201462), PHAGE_Salmon_SEN34_NC_028699
Homolog/Ortholog E-Value: 5.53e-72
Locus 9: SEETMRM13674_RS23565 (Region 1)
Locus: SEETMRM13674_RS23565ORF Start: 4782
ORF Stop: 5009
Strand: Backward
Protein Sequence: MTGIEKAIQKFGTGAALGRALGFSKMTISNWKKTGIPPDHIRSVFELTGVTPHELRPDLYPNPTDALPSQEASAK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SEETMRM13674_RS23565, regulatory protein, phage(gi966201461), PHAGE_Salmon_SEN34_NC_028699
Homolog/Ortholog E-Value: 2.18e-25
Locus 10: SEETMRM13674_RS23570 (Region 1)
Locus: SEETMRM13674_RS23570ORF Start: 5023
ORF Stop: 5490
Strand: Forward
Protein Sequence: MTKVKHHFTNKSNNTCLPTSKAIIYNEVMSDNTLTNGLISRLAELNKKGFSKTEMARVAGVSKQAVSSWFKTGRISKSSALAIADAAGVSVPWLLGEDVGEKDGLKPDEQRLLELYRQLPEEEQQNMMRVFSLRLKELDELYAKYMSRRIKGEGA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SEETMRM13674_RS23570, putative DNA-binding protein, phage(gi966201460), PHAGE_Salmon_SEN34_NC_028699
Homolog/Ortholog E-Value: 2.02e-61
Locus 11: SEETMRM13674_RS23575 (Region 1)
Locus: SEETMRM13674_RS23575ORF Start: 5642
ORF Stop: 6727
Strand: Forward
Protein Sequence: MDNGRVEATDRPTEMIASNTKYLVWNNKGGVGKTFLTYNLAVEFAISHPDQDVVVIDACPQSNVSEIILGGNGTGEENLNYLRDRNVTIAGYIKERFSKSPLSRLGNESSYFVRAHTVNSKMPENLYILPGDVDLDICSRLISHIGSSPVKEAWKKSRSLLVDLIASLEADKSISDRAKTFFIDCNPSFASYTELGVVAANRIIIPCTADAASIRGIKNLVKLIYGVSIDKSEQDEMFLDFNKEAIQNLIELPKLHLFVQNRSRTNESDAAKAFKSHAEEIKRITDDLLKTHPHLFTSGNLSERVQNVKDGNTLAAIINHEGCPLSKLQHKSYTIYGMATQANKAQIEALESDVSTVVKCL
Homolog/Ortholog Species: Tail protein
Homolog/Ortholog Protein: SEETMRM13674_RS23575, minor tail protein, phage(gi100055), PHAGE_Ralsto_RsoM1USA_NC_049432
Homolog/Ortholog E-Value: 6.61e-10
Locus 12: SEETMRM13674_RS23580 (Region 1)
Locus: SEETMRM13674_RS23580ORF Start: 6835
ORF Stop: 7041
Strand: Backward
Protein Sequence: MDRDELEEDRAAFIAGEIGGAVVELIIDGVVISRDAIVDSLEAKRRAVGNVIHKGVLRDAAAMVRKGQ
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: SEETMRM13674_RS23580, hypothetical protein, phage(gi428782417), PHAGE_Entero_HK225_NC_019717
Homolog/Ortholog E-Value: 7.51e-25
Locus 13: SEETMRM13674_RS24150 (Region 1)
Locus: SEETMRM13674_RS24150ORF Start: 7441
ORF Stop: 7611
Strand: Forward
Protein Sequence: MHNQKTCAYHLCGKTIEQGKEVKNELTLIRGAQLTHEERDYCSVRCASYDQMAHES
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: SEETMRM13674_RS24150, hypothetical protein, phage(gi169257260), PHAGE_Phage_Gifsy_1_NC_010392
Homolog/Ortholog E-Value: 7.35e-14
Locus 14: SEETMRM13674_RS23585 (Region 1)
Locus: SEETMRM13674_RS23585ORF Start: 7752
ORF Stop: 8145
Strand: Forward
Protein Sequence: MEFFYVVKATQKSGKQDATVWFTAKSEARANLMLDVVLEDAEIETGRGKDYARPIRTNFPVVNELPPEGEISFTFTNYYRLGEDGMTWEQIPGVTLPSSEAAAAARQHIVDGVDTETGEVLEDHTENFGNEA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SEETMRM13674_RS23585, RecE, phage(gi423262421), PHAGE_Salmon_SPN3UB_NC_019545
Homolog/Ortholog E-Value: 3.15e-49
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download