Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1798959664 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1798959664.PHASTER.zip
gi|00000000|ref|NZ_WXYU01000026.1| Salmonella enterica subsp. enterica serovar Typhimurium strain 41345, gc%: 51.88%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 14Kb | incomplete | 40 | 18 | 12170-26182 info_outline | PHAGE_Klebsi_phiKO2_NC_005857(3) | 54.26% | Show info_outline |
Region DNA
>1 12170-26182 TCACACACCCCGGCCAGAAAAAAACATCACCCGGCATGCGTAAAATCCGGCCAGCGACAG GCAGAATGCATCAGGAATGGCGCTATTTTTTAACCTCATCCTCTTTTCTGGCATATTCCG GGGCATTCTTGTCCGGGAGTTGCGCAAATACTCCAGCCGCGCCCGGAAATACTCTCTCAA ATGCTCAGGCTGTTCTCTGACGACAAGCTCAGCGACCACCGGCATCGCCAGCCTTTCTTT ATAGACCACGCCTGAAGCAACCAGGTCAATGGCCACTTTATCCTGCTCTTCTTTAGTTGT TGCCGCCAGATTCAGTCCGGACATCACATCCTCCGACAGAAATGGAAACCGGCTGTAAGT GTACGCCATCAGAGGCAGAGGGGGAAAAGGGCAGGGAGCGGCGCGAAGCGCGGCCCCTGT CCTTCCCCCCGCAGGCGCCAGCCTGCAGGTTTTTTCGCGCGGGCTGACAGGCGCCCTCCC CGCCTGCCATCATGCCTGACTGCTTTTTCCGCCCTGTAAGAGGAAGTGACCACCGGTGTA CACGGCGCACTAATATCTGTCAGTAGTTTCCTTCGGTCAGGTTATGCGCCGGGATATTTG TGGAAAGCAGGTATCGCAACGTATCCAGCGCGGTTTCTTCTTCAGCAGCCCTGTCCTGCG TCTGGTAACGAGGAAGGTTCATTCCGGCTTCCATCAGGGGTAAAAGCGTGCGCAGCACAT CTTCAGGTACAGCAATCTGGCGCGGTGGGCGCAGTGCGACTAACTCGCGTAATACACCCT CAACAAAATTCTGGCCAATACCATCACGCCAGAGCGCATCACTGTCCGACTCGCCAATGG CGCGCAGTACGGCCTGTATGTCATCAGCGGTCGGATTAAACTCCGCCCCCATTTCCCGCA CATCGCCTTCACACCAGATGATGACAGCGATTTTTTCGTGATTCTCATACACTTTCAGTA AGTCGCAGCAGATGGTGCTGACGGTTCCGTACATAACAGACTCCTCTTAAATCAATGAAT GACAGTTACAGCGGGGCGGCATCGCCGCCCCGTCGGTTAATCAGTCGAGCGCGGCGTAAA TAGCGTTGCATTCAGGGTGAAACGTAATGTGATTCCAGAGCTGGGTATCACGCAGCATAT ACAGGCGAGTGAGCGCAGCGTTGCCGCAGTCGTGATGCGTCCAGCAACGGCGGTTAATGG CGAGCGAAGTCAGAATAATTCCGGCAGCGTCGGCGCTGACGGTACGATCAAACCAGTTTT CACCGTTGATCATGTGTACCCGATCGCAGTCGGGCATCATGTATCCGCCGCCTTCCGGCA GACGGATAAAATGCCAGAAACCACCGTTGTATTCAGGCATCCATTTTTTCGCCAGGGCAT ATAACTGTAATTCAGCCAGCATAAAATCGTTGCCGAACATGTACGGCAGGAAAGACAGGC GGTCGGATTCTTCAACGTTAATAACACGCGCACGTTGCTGATTTGAATACTGCATAAAAC CTCCGTAATCACATATTCCGCGACACCGGGCGGTGCCGTGCATCCATACCAGTCGGGCGA TCAATCGTGGATGCAAGGGCGCAAGGGAAGCCGCAGCCTGACGCGCACGGAAGACGGGAG CTGAAGGGTGAGACCGTGAAACCTGAACGGTCGAACGACCGGAAGATCGCGGCTGACGTG AAGGAAGGACCGGGTGACCGCCGCGTGCACTTTACCCTTGTATCCACGACAGCCCGACTA CGATGGATGCACGGCACAGCCCGCACACGACACAGGACTGTCAGAGTGGAAAACCACAAG GCGACGGCCGGCAGGCCTGAGCCGGGTGAATGCGGAGCCGAAAAGGCGACATCCTTTTGC CTGTTTTGCCTGTCGTCCCCGGCATCGTCGCAGTCGCCGGCTGAAAAACTGAAAAAAGAG AAGGAGACCTCCCCTTCTCTTTTCTTTCTCGTTACCGTTTACAGCTTATCGTTCACCGCA CACAGCTTATTTAACGGATGTTGCCTGTGAAACTCCGGGCTTCGTTCACCACATCCCGGA GCACGCGGCGGTCAAGCCAGCGGCGGTTCGGTTCCCCCGGGAAGCGCAAACAGTCGGTTA TCACGCCGGCGGCTTCGATTTCTTCCTCCGGCTCATTAACCAGCGTCAGCAGCACCGGGC AGAAACGGGCGTTACGTACCAGTACCGCGTCCAGCACCTTATCCAGTCCGTCCTCGTCCT CTTCGTCAAGCCAGTTATCATGGTCGTATTCATCGGCCAGTAACCGCCAGTTCCCGATGC GTTTTTCCATCAGGCGGGACTCGCCGGACGGTGCCAGCGCCGCCGCGATGCGCTTCGTAT CCTGGCGGACAATTTCACATACCCGGTCAGCGGACGCTTTCAGGAACGCCAGCAGGTCGG CATATTCGTCCGTGGTCAGCCACTCCTGAGCATACGGAAGGCGAATTTCAGTGCATTCGC GTACCGTGGCAGGGTGCGGATATGCCTGTACCGGGTACAGATGTAACCGGACTGGCGTCC CCGCCAGCCGCTGCGCACTGGCCGTCAGCAGTTGCGCCCGTCCATAATTAAGGGGCTGAC AAAGATGCGTCGTCAGTGCCAAGATTTCGGCAGCACTGAGCACACCGCAGACGGCCAGCC AGCCGGGCACCACACCGGGGGCCACCTGCGTCACGCCGACGGTTTCGGGCCAGCCGGACC GGCGTAACAGATTATCTCCGTGGCGCACTATCAGCGTACTGAGCGTGTTTCTCATTGTGT TGTTCCTCTTCGTGTTCATACAGTTGTGATTGATACCCCGCCCGTCACCCGGTACGGGGT GGTACGTTACGCCGCCAGCGCCAGTTGCCTGAGCCGCGCAATATCGACCTGAGCGTCGGC AACGCCGGGGTACTCCTGACATACAAGAGGCCAGGCCTGAGCGTCCTCCGTATCCAGCGC CCGCCCGGCGATATTCGTCACCCTTGCCAGCAGGTCGGCGGGAACACTGACGGTCGGGAT TTCAGTCCGTAATCCGGCGTACAGCGCCTGTACCGTGCTGTCTGAAATACCGTCTCCGGT ATGTTCGCCCATACCTTTTCGGCCAATCTCACGCAAAATCGCATCGGCCTCCACTTCGGT CATCGCCTGAGTCAGTGACATAACGTCCTGCTTCGTCCAGATCAGCAGGGCAAAACGCTC GTCGTTGCCAAACATGCGTTTCAGCTTTGAGTTCAGTTCTTTACGTGTGCCATACATCAT GATTTTCTCCGTTGGTTCAGTGGGGCGGCACCGCCGCCCGTGGTCTCGTCATCTGTCAGT CTTTAAAACACTCATTGAGCATCAGGCTTTCGTTGTACGCTTCATCCAGCAGGGTGTTGA TACGCCGCAGACTCTGCCCGGCCAGTCGTTCAGTAAGTCCGTGACGCTGCCAGTGATAAC GCTCTTCCAGCACTTTCAGGGTGGCGCGCAGGTCGCACATGCTGTTGGCCAGCGCCGCCA CTTCTGCGCGGAGTTTTTCGTGTCCGGAATAGTTCATTACGCGGCCTCCGGATAAAAGAC GTCGTTGGCGGCCGGGCGTTGCATGGCGCGCTGTACGGCTGTCAGGCGCTCAATCCCGGC TTTGTGGTACTGCTCCATCAGCTCGATACCGATATATCTGCGCCCCGCCTGTAACGCGGC AACGCAGGTGGAGGCGGAGCCGGCAAACGGGTCGAGAACAATGGCGTTCGTGTGTGTGAA AGACTCAATCAGCGGTTGCAGGCTGGTAACGGGCTTTTCCGTCGGGTGGTGGCGATTGCC GGAATACTTCCAGCCGAGGACATCCGGCAGCGGGTTCTGTGGCAGGGCCGGACGGCCTTT CGCCAGCACGTAAGCGCATTCATGGCGGTAGCCGACATACGCGGATTTTGACGAGTAGTT TTTGGTGAATACCAGGTGTCCGACCACGCTGAAACCGGCACTTTTCCAGGCCGCCATGAA ACGGTCCACGCGGTTCCAGCCGTAGAAACTGACCAGCAGCGCATCTTTTTTGAGTACGCG GTACATCTGGTTACAGGCGGGTTGCAGCCACTCGTCGGTTCTGTCACCGGCAATACTGCG GCCGGAACGGTCACGGAATCCGACAAGGTAAGGCGGGTCGGTCAGAATGAAATCGACGGC GCGCTCCGGAAAGCCGGACATAATATCGACACAGTTCCCCAGGATTAAACGGGACATAGA GATTCCTCGCGGTTACAGGAGGCACCGGGAGGGCGTCCCTGTGACGCCCGTTCCCCGCTG CCTGTGGGCTGTTCACCGCGTCCGGTAACGGGTCAGGCCGACCGTGGAATAACGAGCCGA CAGTCCTCACCGTCGGTGAGTTTATGCCGCGAAAGCGGCTTGAAGGGCGTTCATCAGAAG GCGAGTGCCGGGCGCATAATAGCGACAGCGCCCGGCAGGAGCAGAAAAATCGCCCGTCCC GTGCCCGGCCGGACGCGGGATACTGACCACAGGCAGCGTTGCTCCCGCGCCGCCGGCGCT GGCGCCGAAAAAAGAGGAGCTGCGCGACATCATTATTCATTCAGGAAGTACCAGGCAGAC GTACTGCCCGGCAGATTATCAGCGGGTGATATCCCGCCAGTCATTCCCCCACTCATCGCG CAGTACCGGCGCATCCGTTGAGCCGGTCACTGTCCACGCATCGAGGAACTTCAGACCACG CAGGATACTGTTTTCCACGTCATCGAGCAGAATGATGCTGTTAAACCAGACCACGCCTGT TTCATATTCCCACCGATGCCGGTCATCCTCGCGTTTCAACGATGGCCACCAGGTGCGCCC CATTTGCAGAACACCCGCTTCGGCATGCTCCAGGTCAGTCGCGGAAACCAGGTAATGCAC CATCATTTCAGTGCCATTGACGTCGACACTCAGGCCAACAAGCCAGGTATCATTAATGTT TGAATTATTATCCACCGCGCTTCACCTCATCGATTGCCCATTGCAGATGGCTCCAGTTGA ACCCGTCATTCGCATCATGGCAGTGCTGTGCCAGCTCCATCGCCGCATCGATATCGTCTT CCGTGAGCGAACTGTCCAGCGCCAGAAAATCACTGGCCAGCCAGAACGTACCGCAGCACA GCGCATCATCAGGAAACCGGGAAAGACGCTGTTTAAACGCAGCGACTGTCATATTGCGGG ACAGCGTGATACAGGCCGGAAAAACACTGTCTGCCACATCGTTCCAGCTCCACTCATCAC TGTCTGGTACTGGTCGCTCCACGGTTTCCGTGGTCACACCAGGCAGACGGGATAAACGTT CCAGAATATCCCCCAGGTACAGCTTCTCGCCGCTGCCGTCTTCACTGGACAGATAATGTC CGTTGATATAAAGCGCAAACTCGCCATTTTCCAGGTCGATACAGGTCACTCTGAACATAA GATTTTCCTCAACATCCGGCAGGAGGCATCACCGCGATACCGTTCCCTGCCGCACGCTGC CTGTTCGTCGCGTCCGGTAACGGGTCAACGCCGACCGTGGAATAACGAGCCGACAATTCT CATCGTCGGCGAGCTTATGCCGCGAAAGCGGCTTGAAGGGCGCCCTTAAACTGGCGAGGG TATGGAGTACAATCACAACGACGCCAGCGCCCGTCCCGTGACAGGCCGGACGCGGCACAC TGGCAGCGGGTGGCAGTCAGCATCAGGTGTGCAGGAATGGCCGGGGTGACAACAGGAGCT GAAGGGAAACACCAGAGGAGGACAGATGACATACCAACAGTTCTGCGTTGCTCCTCCACA GGGTTATTAACTGATTCTGTGGATAACCTGACATCTGTTTTTCCAGGCAGAACAGTTATC TGAGGGGAAACAGTAAAATTTCACTTGCAGGACAGAAAATATCTTAAATAATGCTGTATA TAAAAACAGGCATTTTAAGAGGTATGCCATGTTACTGCTTGTAGCACCCGAACAGGAGCC GGTACAGTCCACTGCCCCGCTGTTCACCGAACGTTGCCCGGCGGGGTTTCCGTCGCCGGC CGCCGATTACACAGAGGAGGAACTGGATCTGAATGCCTACTGTATACGGCGTCCGGCTGC AACATTCTTCGTCAGGGCTATCGGGGATTCGATGAAAGAAATGGGTCTGCATTCCGGCGA TTTAATGGTTGTCGACAAAGCTGAGAAACCCATGCAGGGGGATATTGTCATCGCGGAAAC AGATGGCGAGTTCACCGTTAAGCGCCTGCAGTTGAAGCCCCGTATCGCCCTGCTGCCGAT TAATCCGGCCTACCCCACGCTTTATCCGGAAGAACTGCAGATTTTCGGGGTGGTGACGGC TTTTATACACAAAACCCGGAGCACAGACTGATGTTCGCTTTGGCTGACGTCAACTCGTTC TATGCCAGTTGCGAAAAGGTCTTTCGCCCCGATTTGCGTGACAGGTCTGTGGTGGTCCTG AGTAACAACGATGGTTGTGTAATCGCGCGCAGCGCTGAAGCAAAAAAACTGGGCATAAAA ATGGGGGTGCCGTGGTTTCAACTGAGGTCGGCGAAATTTCCGGAGCCGGTTATCGCGTTC TCCAGTAATTACGCCCTCTACGCATCAATGTCGAACAGGGTCATGGTTCACCTGGAAGAG CTGGCGCCACGCGTTGAGCAGTACTCCATTGACGAGATGTTTCTGGATATTCGCGGTATA GACAGTTGCATCGATTTCGAGGATTTCGGCCGACAGCTGCGTGAGCACGTTCGTTCCGGC ACAGGGCTGACCATCGGCGTCGGAATGGGACCGACCAAAACGCTGGCTAAAAGCGCGCAA TGGGCATCGAAAGAATGGTCACAGTTCGGAGGCGTGCTTGCCCTGACGTTACACAATCAG AAACGAACGGAGAAACTGCTGTCACTGCAACCGGTGGAGGAAATCTGGGGTGTGGGCCGC AGGATCTCAAAGAAGCTGAACACAATGGGGATCACCACAGCACTGCAGCTGGCCCGCGCG AATCCAACGTTCATCAGGAAAAACTTTAATGTGGTTCTGGAGAGAACGGTCCGGGAACTC AATGGAGAAAGCTGTATTTCCCTGGAGGAAGCACCGCCCCCCAAACAGCAGATAGTCTGC AGCAGAAGCTTTGGAGAACGAGTCACGACTTATGAAGCGATGCGGCAGGCAGTCTGTCAG CACGCTGAACGTGCCGCCGAAAAGCTGCGTGGGGAACGGCAGTTCTGCAGGCATATTGCC GTGTTTGTGAAAACATCGCCGTTCGCCGTAACTGAGCCCTACTACGGTAATCTGGCCAGT GAAAAACTGCTCATCCCCACGCAGGATACACGGGACATCATTGCCGCTGCCGTCAGAGCT CTGGACAGGATCTGGGTGGATGGTCACCGTTACGCAAAGGCAGGCTGTATGCTGAACGAT TTCACGCCAACCGGGGTATCGCAGCTTAATTTGTTTGATGAAGTACAGCCGCGGGAACGG AGCGAGCAGCTGATGCAAGTCCTGGATGGGATTAACCATCCGGGCAAGGGGAAAATATGG TTCGCCGGTCGGGGGATTGCCCCCGAGTGGCAGATGAAAAGGGAACTACTTTCGCCAGCT TATACGACACGTTGGGCAGATATTCCTGCAGCGAAATTGACTTGAAATTGTGGCGATTTC ACCTTGAAATTCTCAATATAAATTACTTAATTACAATAAGTTAGATGTGAAATCGCCGTG GCGAAATTATTGACTCAAATTTCTCTCAAGGACCTCGTTGATAGCTTTGTCCAGTTCATC CTGAACCACTTTTGACATACGACTAAACTCATAAGTTAGCGTACGCCCTTTCACACGCTT GCGCGCGAACTTGTCCTTTTCTTCAAAGGTCCAGAGTGCGGAAATTACTGACTTTTCCTT AGGAGGCGGAGCTATCAATGCCTGAGAGGCCTGAGAAATCAATTTCAGTATACTGGATTT CTGTTCGTCGTCTGGTCGCTCGTAGTCACTCAAAATTGCATCATGCTGATCTGAGACAGA CTGAATGAGCCCTTCAGACGTTAAACCCTTTTCACTGAGTTTTTCATTAACCTCTAACAG AATTTTATAGTCACTAAACGACAGCTCAGACTGAACCGGGAACAGAGAAATCAATTCTTG CGGTACTGCTGCCGCCTGCAGTGCCCTGGTGACCTTAGCCTGGGATAACCCCTCCAGTTC AGCAATTTCCTTTTGATTGAATCCAGACTCTTTCAGAGCCATCAATCTTAAGCCGATCTC CCGAAGGTTATGCTCTTTAGCTGTCTGGATATCTTTAGCCAGATGGCGAGCTTCATCAGC TGATAAAAGTTCATTGGTAACCATTACATCAAGGCCTGTACGGATATAAATCGCTGAGGC TCGCCGTCTTGAACCATCCAGTATCTCAATCCTTTCACCTTGCTGAATGCCAATACAGGG GAAGAACTGCTGAAACTTAATCGTCTGGATAATAGATTTCAGGGACTCCCTGGTCAGAGC AAGTTGATCTCTTCCGTTGGTTTCCTGGTTTACGAATGTCTTACTTTCAACGTCCGATGC AGGTACCCGAACAAACCTGAACGTTATCTTCCTGCCGGTTTTTAGGGTAAATACCTGACT TCTTTGGGTGTCAGTCATCTCAACCATTGACGCCTGGGTATTTAACTGTCTGCCAATAGT TTTTCTTCTCTCATTCGACATCACATACCTCCATTAGTACGAATGAACTCAATGCGATCA AATACGGCCTTCGCAAAGTCTTCCGCTGCTGATTTTGCGCTTTTAAGCGCCTCGGTGCTT CCATCATAGGTTGCTGGATTTGCGGAAATAACTGTGTCAAAAGTCTCCCCGCATCGCTCG AAGCCATCCAGCCTCGGCAGAACCATGTCGAGCATATCGGCACCGAATACTTCTTTGGCC TGACTATGGCAAATTTTGTGATCAGACTTGTTCAGGATTTTGGACATAAAACCTACATTC CCGATGAGATTGCAGGTGTGTCCATCCTGTTCGATCGAATCAATAAGCGCAGGAAGGCTG GCTACAAACTTCAGGGAAGAATGAAAATCAACCGTTGCCGGAGGAAGTGGAGTCAACATC AGGTCTGCCGCTCCGATGCAGTTTTTCAGGAACGCATCGAGGTGAGGACCACTATCAAGG AAGATAAAGTCGTAGTCATACCGGAGCTTGTCGATAATGTTCTCTTTAAGCACTGCATGA ATATTTTGCCCTGGCAGATGTTCCTCACACAATCCCTTCCAGCCTTCAGCAAGGAATGCA TCGTCAATGGAAGCGGGAATAACATCAACGCCCGGGATAATTGACGACACGATGAAATCG GAAAGTAATTCTTCACGAGACACGTTCTGGAGCATGGCCTGAGCAGCCGTATTTTCAACC AGGCCCACTGAATTCTCATGGCTCAGGAACATTGTCAGAGATGCCTGCGGATCGAAATCG ATGGCCAGGATACGCAGGTCTTCGAACAGAAGCTGAGGATGAGCCCGAAATGCATGGGAT AATGAAGCGGTAGAAACTGTCTTGGAACCGCCACCTTTAAGGTTACATACAAATATAGTG AAAGCTTTATCGAAGCGATCTCTGTACTTGGGCACTTTACGATGGAAATACAGATCGATA ACGTTCTGAATCGTCATCGCGTACTTCATGGTATTGCCAGAAGGTTTCTTTTTAAAAATG TAGCCACTGGCTTCCATTTCGGCCACAGCATACTCAACACTCCCTTTGCTGAGCTTAGGC AGCTTATATAGGGCGGCTTTGCTGTATTCCTGATAGAACTCGGTAAGCTTCAATTCCTCT TTTTGCTGGCGGATACTTTCGCTCAAGGATGTCAGAAGTTTACCTGCACGTGTGGCGACT TTCCGTAACTGCTCAATATTTTCCATTTATCACCTCATGATGTTTTTTGTCATTTTGAAC AAAAAGAATCATGTTGCAAGAAATAAATCATAATATTTTGATTTTGCTCTCACAGGAGGC ACCGAAGATTAAATGGAGAAGAGGGCACTACATCCACAATCATTTTGTTAACCCACAGCG CAAACCGTGAGTCTGTTCAGAGCTTGCATCTGAGCAGGCGAAGGGTTGGACAAGCCCAAG GGGCGCGTCAGCCAGGCACATTAGGGTATAGTTCAGCAGTACCAGTTTCTGCCAGGACAT GGATATCTCCGGGCAAGCAAGCTGATGATTAAAAAAGAAAGAGGGGACTGCCCCTGAAGG AATTGCAATTCCGTTCCTCGCAATGTCAACATTTTTTGCCTGTGATACTATGACCGGGTC ATTTTTCAGAGCATGGACTGATGAAAAAGAAAAACACTACGCCGACTCCCCACGACGCGA CATTCCGGCAGTTTCTGACACAACCTGACATTGCCCGGGATTTTATGGAGCTGCATCTGC CGGCAGAGCTGCGTGCCATCTGCGATCTCAGTACACTGAAACTGGAATCCGGCTCGTTTG TTGAGGATGATCTCCGCCAGTATTTCAGCGACGTCCTCTACAGCCTGAAAACCACAGCCG GCGACGGATATATTCATGTCCTGGTTGAACACCAGTCAACACCTGACAAACATATGGCTT TCCGCCTGATACGCTATGCGGTGGCCGCCATGCAGCGCCACCTGGAGGCAGGGCATAAAA AACTGCCACTGGTGATACCAGTGTTGTTCTATACGGGGAAACGCAGCCCGTATCCATACT CCACCCGCTGGCTGGACGAATTTGACGATACGGCTCTGGCAGACAAACTCTACAGCAGTG CTTTCCCGCTGGTAGACGTTACGGTCATTCCGGATGATGAAATCGCCGGCCACCGTAGCA TGGCCGCCCTGACTTTATTGCAGAAACATATTCATCAGCGGGACCTGGCAGAATTGGTTG ACCGGCTGGCGCCCATTTTGCTGGCCGGATATCTGTCTTCATCGCAGGTAATATCGCTGG TACACTATATAGTGCAGGCAGGCGAAACATCGGACGCCGAAGCCTTTGTACGCGAACTGG CACAGCGTGTGCCGCAACACGGAGACGCACTTATGACCATCGCACAACAGCTCGAACAGA AGGGCATCGAGAAGGGGATTCAGCTCGGTGAACAACGTGGTATCGAAAAAGGCCGTTCAG AAGGGGAGCGCGAAGCGACTCTGAAAATAGCCCGTACCATGCTCCAGAACTGCATTGACC GCAATACCGTCATGAAAATGACCGGTCTGACTGAAGACGACCTAGCGCAGATCCGCCACT AATCCCCCTTTTCTGGCACTCCCTGCCCGGCCATCAGCGAATACTGGTGGGGCAGGGAGG CATCAGGCTCTGCCAGCCACAGCGATCAAACAGCTTCATTACCCCCGCTACGTTCCCTGT CAAACGTGCTGTCAGCGAATTTATCTGTCGGCCGCTGTCGTTAAAACCGACATCGAGTTT GGCCCGTGAGAGATAAATGCCGTTCACGCCTGCACTGAGCGCCACAGCATTCCGGCCGGA CCATTCCCGATCGCTCAGCAGACGGTAGTTCCAGTGCATATCTTTCGCTGTTTCCAGAGC ATACGTCAGCCGGAACAGGTCGTTCTGCTCGGACAACTCACCGGTGCATGAACGCCAGAG GTAATTCAGCTTGCTGGCCAGCTTGGCGCTGACGCCCATCTGACGTCCCTGTTTCAAAAG CCACTCGATATCGGGCGTCACATCACGAGAAAAACGCCGTTGCTTCAGCGCAGTCGCCAG CCAGCGGGTGAGAAAGAGGTTTTCCTGTGCCGGCGAGAGAACGCCACCATCCTGCCTGGC CAGCGCAAGCGCCACCAGGGCACACCACGCCAGATGACCTGATTTTTCTGTCAATGTCAC GGCTTCTCCCGCAAGTCAGAAAAATGATGTAATTCATCAGGCATAATCAGCACACGTCAG CCCGTCTTACGGAGAAACATTCGCCGCATCTCACGCGTCAGCTGCTTCTTCTCCCATCCG TAAGGGAAAATAATGCTGTAGTCCCTCCTCTCAGGGAGGATATCAGGGCCCGCGACGATT CGCGCCACCTCCTTATTCAGGCGTTCTCCTCGCCAGCCATAAGCCGCCAGTCGCTTACGG ATACGTGCAACGGGAAAACGTTTATCGGAGTGACGGGGGAAGAGTAACGTCCCGTCCTCA TTTCGTTTGACACCAAACATATCCAGAGACTGTTCGATCACCACTGTTCGAACGGGGAAA TGCTCACGCATAGTTTTCAACATATTCTCCATTTCAGACTCCTGAATTAATCCCTGCAAC TGTCTGACCAGCCAGAGAGCAGCGTTATGCTGGCTCACTCCCTGCGTCATCATTCATTTC ACACTGGAGTTCATGCCAGTATCCGGCAATATTGTTTACCACCTGTGCTGTCATAACGGC GTCAGTGACGGCGGAATGAGCCACCCCGATCCAGCTCAGGCCAGCCTGACTGACAGCACC GGAAAGCGATATGGTTCCGTAACGATTTGTACTGCAGCTGCTGCCGGATCGATGCCGACT GTGGGTTTCAGGCGGGTCTCAAATATCCTCTCACCGCGGGCATTCACCAGACCGATTTCC AGCGCCTGCGCGCCGGCATCAAGTCCGGTCGTTTCGGTATCGAGGAAGACGGGGCCCAGT GCTAACCAGGTATGTGCCAGCATGGCGAACCTGCCACGCTCACTCTTCATCCGGGCCTGC AGGCCCAGACGTGTGCTGGCCAGCCGCTGTTTTTCTGTCTGAGGGCGTTTCGCCCGCATC GGGACGCAGTCAGCCAGCCGCCATACGCCGTATTTCCCGCCGTAAGGACTTTTGTACATT CTGACCGGTTCCGCACCAGGGGCTGGCTTCATCCTGAACTCATCCCGAAGCCGCCCTTTG GTGTAGCATTTATCCTCCGCCCGGGGCGCTTCATCACAGGCGTCTGAATTGTCATCATCA CGCATTCTGGCCACCGGTCTGTTTATTGCCTGAAAGCGCCGCCATCAGTGACTGGTTCTG ACGCTTCAGGGCTTCAGCCTCACCACGCAGTGCCGCGACCGTTTCTTTCTCCCCCATCGT CTCCAGACGGGCATCATCACGCTGGTTTTCCAGCTGTGTGCAACGCTCTGTCAGACTGGC TATTTCACTGCCCATACGCACCAGTTGCTCCGAGGAGGCCTTTTCCTGCGATTCCAGCCT TGCGGTGAGGCTGCTGACTCTGTCACGTTCAAGTGCAATCTCACCGGCGCGCGCCTGCGT GTCAGCGATGGCCTGCTCGAGGCGTTGCTGCAGCGTTTCGCGGGTGGCCAGATGCTGCTG ACGTTCTGAGGCCAGCGCATTTTCCTGCGATTCAAGGCGGGTAAGGAGAGTATTGACTTT ATCGCGTTCAGACTTCAGTTCTTCTGTACGCGCATTAGCTTCGGCAGAAATTTGCTCCAG TCGTTTCTGCAGGTCTTCCCGCGTGTTTTTGTGCTGTGCCTGCTCCGCATTAAGCGCATC CTGCAGCACTGTCTTCTGCTCCTGATACCGTTCCTCTCGCTGACGGGTATTCTCTTCAGC GGCCGCAAGACGCTCTTTCAGCTGGGCCATCTCCACATCATGCTGCTGACGCAGTGAACG TTCTGACTCCAGCGCCAGCGTCAAACTGTCATATCTGTCCTGCAGTTCATCCAGTTTTTC TTCCAGGTCGTCGACTGTCTGCGCGGCGTCGGCCAGCTCCCGCTCTGCCTGTGCGGTCTG TTCACCGGCAGCACGCGTGACTTCCGCAACCCGGCGTTCTGCAGCCCGGACCGCCTTGTC ATTCAGTTCTGTCGCCAGCTGGGTGATGCGTTCGGACAGCGCGGCGGAGACGGCCTTCAC TTCTTCAGCCACTTCCACTGGCAGCTCGGCAACGGGTTCAGTGACGACCGTGCTCTGTGA AGCCTGGTATTCGTCCCATATCTGGCGGAGACGTGTCGGATTGCCGCCACCCACCTGGTT ACGTAGTGCGAACCCGGTGATATTCCGTCCTTCAGCCTGCAGGGCCAGCCCTGCTTCAAT AATCTGTTCTGGTTCGTATGTCGCCGGACGCAT
Region Details
| Region | 1 |
| Region Length | 14Kb |
| Completeness(score) | incomplete(40) |
| Specific Keyword | portal,terminase,transposase |
| Region Position | 12170-26182 |
| # tRNA | 0 |
| # Total Proteins | 18 |
| # Phage Hit Proteins | 11 |
| # Hypothetical Proteins | 3 |
| Phage + Hypothetical Protein % | 77.7% |
| # Bacterial Proteins | 4 |
| Attachment Site | no |
| # Phage Species | 9 |
| Most Common Phage Name(hit genes count) | PHAGE_Klebsi_phiKO2_NC_005857(3) PHAGE_Entero_N15_NC_001901(3) PHAGE_Entero_P1_NC_005856(3) PHAGE_Escher_RCS47_NC_042128(3) PHAGE_Salmon_SJ46_NC_031129(3) PHAGE_Cronob_ENT39118_NC_019934(2) PHAGE_Salmon_vB_SosS_Oslo_NC_018279(2) PHAGE_Pseudo_pf16_NC_041881(1) PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(1) PHAGE_Pseudo_MP1412_NC_018282(1) PHAGE_Escher_HK639_NC_016158(1) PHAGE_Pseudo_M6_NC_007809(1) PHAGE_Pectob_ZF40_NC_019522(1) PHAGE_Faecal_FP_Mushu_NC_047913(1) PHAGE_Vibrio_VP882_NC_009016(1) PHAGE_Strept_phiARI0004_NC_031920(1) PHAGE_Pseudo_YuA_NC_010116(1) PHAGE_Salmon_SEN8_NC_047753(1) PHAGE_Staphy_vB_SepS_SEP9_NC_023582(1) PHAGE_Salmon_SEN34_NC_028699(1) PHAGE_Bacill_SPbeta_NC_001884(1) PHAGE_Staphy_Stau2_NC_030933(1) PHAGE_Sodali_phiSG1_NC_007902(1) PHAGE_Strept_7201_NC_002185(1) PHAGE_Yersin_PY54_NC_005069(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 16.66% |
| GC % | 54.26% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NZ_WXYU01000026.1| Salmonella enterica subsp. enterica serovar Typhimurium strain 41345, gc%: 51.88%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 18 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(12170..12493) | PHAGE_Escher_HK639_NC_016158: DNA pol III theta; GUK01_RS21980; phage(gi356870660) | 4.70e-22 | Showinfo_outline |
| 2 | complement(12729..13163) | DUF1380 family protein; GUK01_RS21985 | 0.0 | Showinfo_outline |
| 3 | complement(13230..13664) | PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; GUK01_RS21990; phage(gi162135127) | 2.72e-17 | Showinfo_outline |
| 4 | complement(14160..14924) | membrane protein; GUK01_RS22000 | 0.0 | Showinfo_outline |
| 5 | complement(14996..15409) | DUF1380 family protein; GUK01_RS22005 | 0.0 | Showinfo_outline |
| 6 | complement(15465..15686) | PHAGE_Entero_N15_NC_001901: gp50; GUK01_RS22010; phage(gi9630517) | 3.61e-06 | Showinfo_outline |
| 7 | complement(15686..16366) | PHAGE_Faecal_FP_Mushu_NC_047913: hypothetical protein; GUK01_RS22015; phage(gi100026) | 1.60e-28 | Showinfo_outline |
| 8 | complement(16748..17104) | hypothetical protein; GUK01_RS22020 | 0.0 | Showinfo_outline |
| 9 | complement(17097..17567) | hypothetical protein; GUK01_RS22025 | 0.0 | Showinfo_outline |
| 10 | 18078..18500 | PHAGE_Cronob_ENT39118_NC_019934: protein umuD; GUK01_RS22030; phage(gi431811072) | 5.58e-26 | Showinfo_outline |
| 11 | 18500..19774 | PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; GUK01_RS22035; phage(gi431811050) | 0.0 | Showinfo_outline |
| 12 | complement(19856..20830) | PHAGE_Escher_RCS47_NC_042128: portal protein; GUK01_RS22040; phage(gi100069) | 1.02e-110 | Showinfo_outline |
| 13 | complement(20830..22035) | PHAGE_Escher_RCS47_NC_042128: terminase large subunit; GUK01_RS22045; phage(gi100070) | 0.0 | Showinfo_outline |
| 14 | 22450..23391 | PROPHAGE_Escher_MG1655: predicted transposase; GUK01_RS22050; phage(gi16131287) | 2.06e-110 | Showinfo_outline |
| 15 | complement(23423..23989) | DUF2913 family protein; GUK01_RS22055 | 0.0 | Showinfo_outline |
| 16 | complement(24046..24381) | hypothetical protein; GUK01_RS22060 | 0.0 | Showinfo_outline |
| 17 | complement(24565..24981) | PHAGE_Vibrio_VP882_NC_009016: putative exonuclease; GUK01_RS22065; phage(gi126010887) | 6.79e-08 | Showinfo_outline |
| 18 | complement(25067..26182) | PHAGE_Strept_7201_NC_002185: ORF33; GUK01_RS22070; phage(gi9634660) | 9.65e-08 | Showinfo_outline |
Sequence
>complement(12170..12493)
SalmonellaentericasubspentericaserovarTyphimuriumMSGLNLAATTKEEQDKVAIDLVASGVVYKERLAMPVVAELVVREQPEHLREYFRARLEYLRNSRTRMPRNMPEKRMRLKNSAIPDAFCLSLAGFYACRVMFFSGRGV
Sequence
>complement(12729..13163)
SalmonellaentericasubspentericaserovarTyphimuriumMYGTVSTICCDLLKVYENHEKIAVIIWCEGDVREMGAEFNPTADDIQAVLRAIGESDSDALWRDGIGQNFVEGVLRELVALRPPRQIAVPEDVLRTLLPLMEAGMNLPRYQTQDRAAEEETALDTLRYLLSTNIPAHNLTEGNY
Sequence
>complement(13230..13664)
SalmonellaentericasubspentericaserovarTyphimuriumMQYSNQQRARVINVEESDRLSFLPYMFGNDFMLAELQLYALAKKWMPEYNGGFWHFIRLPEGGGYMMPDCDRVHMINGENWFDRTVSADAAGIILTSLAINRRCWTHHDCGNAALTRLYMLRDTQLWNHITFHPECNAIYAALD
Sequence
>complement(14160..14924)
SalmonellaentericasubspentericaserovarTyphimuriumMRNTLSTLIVRHGDNLLRRSGWPETVGVTQVAPGVVPGWLAVCGVLSAAEILALTTHLCQPLNYGRAQLLTASAQRLAGTPVRLHLYPVQAYPHPATVRECTEIRLPYAQEWLTTDEYADLLAFLKASADRVCEIVRQDTKRIAAALAPSGESRLMEKRIGNWRLLADEYDHDNWLDEEDEDGLDKVLDAVLVRNARFCPVLLTLVNEPEEEIEAAGVITDCLRFPGEPNRRWLDRRVLRDVVNEARSFTGNIR
Sequence
>complement(14996..15409)
SalmonellaentericasubspentericaserovarTyphimuriumMMYGTRKELNSKLKRMFGNDERFALLIWTKQDVMSLTQAMTEVEADAILREIGRKGMGEHTGDGISDSTVQALYAGLRTEIPTVSVPADLLARVTNIAGRALDTEDAQAWPLVCQEYPGVADAQVDIARLRQLALAA
Sequence
>complement(15465..15686)
SalmonellaentericasubspentericaserovarTyphimuriumMNYSGHEKLRAEVAALANSMCDLRATLKVLEERYHWQRHGLTERLAGQSLRRINTLLDEAYNESLMLNECFKD
Sequence
>complement(15686..16366)
SalmonellaentericasubspentericaserovarTyphimuriumMSRLILGNCVDIMSGFPERAVDFILTDPPYLVGFRDRSGRSIAGDRTDEWLQPACNQMYRVLKKDALLVSFYGWNRVDRFMAAWKSAGFSVVGHLVFTKNYSSKSAYVGYRHECAYVLAKGRPALPQNPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESFTHTNAIVLDPFAGSASTCVAALQAGRRYIGIELMEQYHKAGIERLTAVQRAMQRPAANDVFYPEAA
Sequence
>complement(16748..17104)
SalmonellaentericasubspentericaserovarTyphimuriumMDNNSNINDTWLVGLSVDVNGTEMMVHYLVSATDLEHAEAGVLQMGRTWWPSLKREDDRHRWEYETGVVWFNSIILLDDVENSILRGLKFLDAWTVTGSTDAPVLRDEWGNDWRDITR
Sequence
>complement(17097..17567)
SalmonellaentericasubspentericaserovarTyphimuriumMFRVTCIDLENGEFALYINGHYLSSEDGSGEKLYLGDILERLSRLPGVTTETVERPVPDSDEWSWNDVADSVFPACITLSRNMTVAAFKQRLSRFPDDALCCGTFWLASDFLALDSSLTEDDIDAAMELAQHCHDANDGFNWSHLQWAIDEVKRGG
Sequence
>18078..18500
SalmonellaentericasubspentericaserovarTyphimuriumMLLLVAPEQEPVQSTAPLFTERCPAGFPSPAADYTEEELDLNAYCIRRPAATFFVRAIGDSMKEMGLHSGDLMVVDKAEKPMQGDIVIAETDGEFTVKRLQLKPRIALLPINPAYPTLYPEELQIFGVVTAFIHKTRSTD
Sequence
>18500..19774
SalmonellaentericasubspentericaserovarTyphimuriumMFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIARSAEAKKLGIKMGVPWFQLRSAKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFGRQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQPVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLNLFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPAAKLT
Sequence
>complement(19856..20830)
SalmonellaentericasubspentericaserovarTyphimuriumMSNERRKTIGRQLNTQASMVEMTDTQRSQVFTLKTGRKITFRFVRVPASDVESKTFVNQETNGRDQLALTRESLKSIIQTIKFQQFFPCIGIQQGERIEILDGSRRRASAIYIRTGLDVMVTNELLSADEARHLAKDIQTAKEHNLREIGLRLMALKESGFNQKEIAELEGLSQAKVTRALQAAAVPQELISLFPVQSELSFSDYKILLEVNEKLSEKGLTSEGLIQSVSDQHDAILSDYERPDDEQKSSILKLISQASQALIAPPPKEKSVISALWTFEEKDKFARKRVKGRTLTYEFSRMSKVVQDELDKAINEVLERNLSQ
Sequence
>complement(20830..22035)
SalmonellaentericasubspentericaserovarTyphimuriumMENIEQLRKVATRAGKLLTSLSESIRQQKEELKLTEFYQEYSKAALYKLPKLSKGSVEYAVAEMEASGYIFKKKPSGNTMKYAMTIQNVIDLYFHRKVPKYRDRFDKAFTIFVCNLKGGGSKTVSTASLSHAFRAHPQLLFEDLRILAIDFDPQASLTMFLSHENSVGLVENTAAQAMLQNVSREELLSDFIVSSIIPGVDVIPASIDDAFLAEGWKGLCEEHLPGQNIHAVLKENIIDKLRYDYDFIFLDSGPHLDAFLKNCIGAADLMLTPLPPATVDFHSSLKFVASLPALIDSIEQDGHTCNLIGNVGFMSKILNKSDHKICHSQAKEVFGADMLDMVLPRLDGFERCGETFDTVISANPATYDGSTEALKSAKSAAEDFAKAVFDRIEFIRTNGGM
Sequence
>22450..23391
SalmonellaentericasubspentericaserovarTyphimuriumMKKKNTTPTPHDATFRQFLTQPDIARDFMELHLPAELRAICDLSTLKLESGSFVEDDLRQYFSDVLYSLKTTAGDGYIHVLVEHQSTPDKHMAFRLIRYAVAAMQRHLEAGHKKLPLVIPVLFYTGKRSPYPYSTRWLDEFDDTALADKLYSSAFPLVDVTVIPDDEIAGHRSMAALTLLQKHIHQRDLAELVDRLAPILLAGYLSSSQVISLVHYIVQAGETSDAEAFVRELAQRVPQHGDALMTIAQQLEQKGIEKGIQLGEQRGIEKGRSEGEREATLKIARTMLQNCIDRNTVMKMTGLTEDDLAQIRH
Sequence
>complement(23423..23989)
SalmonellaentericasubspentericaserovarTyphimuriumMTLTEKSGHLAWCALVALALARQDGGVLSPAQENLFLTRWLATALKQRRFSRDVTPDIEWLLKQGRQMGVSAKLASKLNYLWRSCTGELSEQNDLFRLTYALETAKDMHWNYRLLSDREWSGRNAVALSAGVNGIYLSRAKLDVGFNDSGRQINSLTARLTGNVAGVMKLFDRCGWQSLMPPCPTSIR
Sequence
>complement(24046..24381)
SalmonellaentericasubspentericaserovarTyphimuriumMENMLKTMREHFPVRTVVIEQSLDMFGVKRNEDGTLLFPRHSDKRFPVARIRKRLAAYGWRGERLNKEVARIVAGPDILPERRDYSIIFPYGWEKKQLTREMRRMFLRKTG
Sequence
>complement(24565..24981)
SalmonellaentericasubspentericaserovarTyphimuriumMKPAPGAEPVRMYKSPYGGKYGVWRLADCVPMRAKRPQTEKQRLASTRLGLQARMKSERGRFAMLAHTWLALGPVFLDTETTGLDAGAQALEIGLVNARGERIFETRLKPTVGIDPAAAAVQIVTEPYRFPVLSVRLA
Sequence
>complement(25067..26182)
SalmonellaentericasubspentericaserovarTyphimuriumMRPATYEPEQIIEAGLALQAEGRNITGFALRNQVGGGNPTRLRQIWDEYQASQSTVVTEPVAELPVEVAEEVKAVSAALSERITQLATELNDKAVRAAERRVAEVTRAAGEQTAQAERELADAAQTVDDLEEKLDELQDRYDSLTLALESERSLRQQHDVEMAQLKERLAAAEENTRQREERYQEQKTVLQDALNAEQAQHKNTREDLQKRLEQISAEANARTEELKSERDKVNTLLTRLESQENALASERQQHLATRETLQQRLEQAIADTQARAGEIALERDRVSSLTARLESQEKASSEQLVRMGSEIASLTERCTQLENQRDDARLETMGEKETVAALRGEAEALKRQNQSLMAALSGNKQTGGQNA
Salmonella enterica subsp
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 41345 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: GUK01_RS21980 (Region 1)
Locus: GUK01_RS21980ORF Start: 12170
ORF Stop: 12493
Strand: Backward
Protein Sequence: MSGLNLAATTKEEQDKVAIDLVASGVVYKERLAMPVVAELVVREQPEHLREYFRARLEYLRNSRTRMPRNMPEKRMRLKNSAIPDAFCLSLAGFYACRVMFFSGRGV
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK01_RS21980, DNA pol III theta, phage(gi356870660), PHAGE_Escher_HK639_NC_016158
Homolog/Ortholog E-Value: 4.70e-22
Locus 2: GUK01_RS21985 (Region 1)
Locus: GUK01_RS21985ORF Start: 12729
ORF Stop: 13163
Strand: Backward
Protein Sequence: MYGTVSTICCDLLKVYENHEKIAVIIWCEGDVREMGAEFNPTADDIQAVLRAIGESDSDALWRDGIGQNFVEGVLRELVALRPPRQIAVPEDVLRTLLPLMEAGMNLPRYQTQDRAAEEETALDTLRYLLSTNIPAHNLTEGNY
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GUK01_RS21985, DUF1380 family protein
Homolog/Ortholog E-Value: N/A
Locus 3: GUK01_RS21990 (Region 1)
Locus: GUK01_RS21990ORF Start: 13230
ORF Stop: 13664
Strand: Backward
Protein Sequence: MQYSNQQRARVINVEESDRLSFLPYMFGNDFMLAELQLYALAKKWMPEYNGGFWHFIRLPEGGGYMMPDCDRVHMINGENWFDRTVSADAAGIILTSLAINRRCWTHHDCGNAALTRLYMLRDTQLWNHITFHPECNAIYAALD
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK01_RS21990, hypothetical protein, phage(gi162135127), PHAGE_Pseudo_YuA_NC_010116
Homolog/Ortholog E-Value: 2.72e-17
Locus 4: GUK01_RS22000 (Region 1)
Locus: GUK01_RS22000ORF Start: 14160
ORF Stop: 14924
Strand: Backward
Protein Sequence: MRNTLSTLIVRHGDNLLRRSGWPETVGVTQVAPGVVPGWLAVCGVLSAAEILALTTHLCQPLNYGRAQLLTASAQRLAGTPVRLHLYPVQAYPHPATVRECTEIRLPYAQEWLTTDEYADLLAFLKASADRVCEIVRQDTKRIAAALAPSGESRLMEKRIGNWRLLADEYDHDNWLDEEDEDGLDKVLDAVLVRNARFCPVLLTLVNEPEEEIEAAGVITDCLRFPGEPNRRWLDRRVLRDVVNEARSFTGNIR
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GUK01_RS22000, membrane protein
Homolog/Ortholog E-Value: N/A
Locus 5: GUK01_RS22005 (Region 1)
Locus: GUK01_RS22005ORF Start: 14996
ORF Stop: 15409
Strand: Backward
Protein Sequence: MMYGTRKELNSKLKRMFGNDERFALLIWTKQDVMSLTQAMTEVEADAILREIGRKGMGEHTGDGISDSTVQALYAGLRTEIPTVSVPADLLARVTNIAGRALDTEDAQAWPLVCQEYPGVADAQVDIARLRQLALAA
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GUK01_RS22005, DUF1380 family protein
Homolog/Ortholog E-Value: N/A
Locus 6: GUK01_RS22010 (Region 1)
Locus: GUK01_RS22010ORF Start: 15465
ORF Stop: 15686
Strand: Backward
Protein Sequence: MNYSGHEKLRAEVAALANSMCDLRATLKVLEERYHWQRHGLTERLAGQSLRRINTLLDEAYNESLMLNECFKD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK01_RS22010, gp50, phage(gi9630517), PHAGE_Entero_N15_NC_001901
Homolog/Ortholog E-Value: 3.61e-06
Locus 7: GUK01_RS22015 (Region 1)
Locus: GUK01_RS22015ORF Start: 15686
ORF Stop: 16366
Strand: Backward
Protein Sequence: MSRLILGNCVDIMSGFPERAVDFILTDPPYLVGFRDRSGRSIAGDRTDEWLQPACNQMYRVLKKDALLVSFYGWNRVDRFMAAWKSAGFSVVGHLVFTKNYSSKSAYVGYRHECAYVLAKGRPALPQNPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESFTHTNAIVLDPFAGSASTCVAALQAGRRYIGIELMEQYHKAGIERLTAVQRAMQRPAANDVFYPEAA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK01_RS22015, hypothetical protein, phage(gi100026), PHAGE_Faecal_FP_Mushu_NC_047913
Homolog/Ortholog E-Value: 1.60e-28
Locus 8: GUK01_RS22020 (Region 1)
Locus: GUK01_RS22020ORF Start: 16748
ORF Stop: 17104
Strand: Backward
Protein Sequence: MDNNSNINDTWLVGLSVDVNGTEMMVHYLVSATDLEHAEAGVLQMGRTWWPSLKREDDRHRWEYETGVVWFNSIILLDDVENSILRGLKFLDAWTVTGSTDAPVLRDEWGNDWRDITR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK01_RS22020, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 9: GUK01_RS22025 (Region 1)
Locus: GUK01_RS22025ORF Start: 17097
ORF Stop: 17567
Strand: Backward
Protein Sequence: MFRVTCIDLENGEFALYINGHYLSSEDGSGEKLYLGDILERLSRLPGVTTETVERPVPDSDEWSWNDVADSVFPACITLSRNMTVAAFKQRLSRFPDDALCCGTFWLASDFLALDSSLTEDDIDAAMELAQHCHDANDGFNWSHLQWAIDEVKRGG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK01_RS22025, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 10: GUK01_RS22030 (Region 1)
Locus: GUK01_RS22030ORF Start: 18078
ORF Stop: 18500
Strand: Forward
Protein Sequence: MLLLVAPEQEPVQSTAPLFTERCPAGFPSPAADYTEEELDLNAYCIRRPAATFFVRAIGDSMKEMGLHSGDLMVVDKAEKPMQGDIVIAETDGEFTVKRLQLKPRIALLPINPAYPTLYPEELQIFGVVTAFIHKTRSTD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK01_RS22030, protein umuD, phage(gi431811072), PHAGE_Cronob_ENT39118_NC_019934
Homolog/Ortholog E-Value: 5.58e-26
Locus 11: GUK01_RS22035 (Region 1)
Locus: GUK01_RS22035ORF Start: 18500
ORF Stop: 19774
Strand: Forward
Protein Sequence: MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIARSAEAKKLGIKMGVPWFQLRSAKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFGRQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQPVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLNLFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPAAKLT
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK01_RS22035, DNA polymerase, phage(gi431811050), PHAGE_Cronob_ENT39118_NC_019934
Homolog/Ortholog E-Value: 0.0
Locus 12: GUK01_RS22040 (Region 1)
Locus: GUK01_RS22040ORF Start: 19856
ORF Stop: 20830
Strand: Backward
Protein Sequence: MSNERRKTIGRQLNTQASMVEMTDTQRSQVFTLKTGRKITFRFVRVPASDVESKTFVNQETNGRDQLALTRESLKSIIQTIKFQQFFPCIGIQQGERIEILDGSRRRASAIYIRTGLDVMVTNELLSADEARHLAKDIQTAKEHNLREIGLRLMALKESGFNQKEIAELEGLSQAKVTRALQAAAVPQELISLFPVQSELSFSDYKILLEVNEKLSEKGLTSEGLIQSVSDQHDAILSDYERPDDEQKSSILKLISQASQALIAPPPKEKSVISALWTFEEKDKFARKRVKGRTLTYEFSRMSKVVQDELDKAINEVLERNLSQ
Homolog/Ortholog Species: Portal protein
Homolog/Ortholog Protein: GUK01_RS22040, portal protein, phage(gi100069), PHAGE_Escher_RCS47_NC_042128
Homolog/Ortholog E-Value: 1.02e-110
Locus 13: GUK01_RS22045 (Region 1)
Locus: GUK01_RS22045ORF Start: 20830
ORF Stop: 22035
Strand: Backward
Protein Sequence: MENIEQLRKVATRAGKLLTSLSESIRQQKEELKLTEFYQEYSKAALYKLPKLSKGSVEYAVAEMEASGYIFKKKPSGNTMKYAMTIQNVIDLYFHRKVPKYRDRFDKAFTIFVCNLKGGGSKTVSTASLSHAFRAHPQLLFEDLRILAIDFDPQASLTMFLSHENSVGLVENTAAQAMLQNVSREELLSDFIVSSIIPGVDVIPASIDDAFLAEGWKGLCEEHLPGQNIHAVLKENIIDKLRYDYDFIFLDSGPHLDAFLKNCIGAADLMLTPLPPATVDFHSSLKFVASLPALIDSIEQDGHTCNLIGNVGFMSKILNKSDHKICHSQAKEVFGADMLDMVLPRLDGFERCGETFDTVISANPATYDGSTEALKSAKSAAEDFAKAVFDRIEFIRTNGGM
Homolog/Ortholog Species: Terminase
Homolog/Ortholog Protein: GUK01_RS22045, terminase large subunit, phage(gi100070), PHAGE_Escher_RCS47_NC_042128
Homolog/Ortholog E-Value: 0.0
Locus 14: GUK01_RS22050 (Region 1)
Locus: GUK01_RS22050ORF Start: 22450
ORF Stop: 23391
Strand: Forward
Protein Sequence: MKKKNTTPTPHDATFRQFLTQPDIARDFMELHLPAELRAICDLSTLKLESGSFVEDDLRQYFSDVLYSLKTTAGDGYIHVLVEHQSTPDKHMAFRLIRYAVAAMQRHLEAGHKKLPLVIPVLFYTGKRSPYPYSTRWLDEFDDTALADKLYSSAFPLVDVTVIPDDEIAGHRSMAALTLLQKHIHQRDLAELVDRLAPILLAGYLSSSQVISLVHYIVQAGETSDAEAFVRELAQRVPQHGDALMTIAQQLEQKGIEKGIQLGEQRGIEKGRSEGEREATLKIARTMLQNCIDRNTVMKMTGLTEDDLAQIRH
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: GUK01_RS22050, predicted transposase, phage(gi16131287), PROPHAGE_Escher_MG1655
Homolog/Ortholog E-Value: 2.06e-110
Locus 15: GUK01_RS22055 (Region 1)
Locus: GUK01_RS22055ORF Start: 23423
ORF Stop: 23989
Strand: Backward
Protein Sequence: MTLTEKSGHLAWCALVALALARQDGGVLSPAQENLFLTRWLATALKQRRFSRDVTPDIEWLLKQGRQMGVSAKLASKLNYLWRSCTGELSEQNDLFRLTYALETAKDMHWNYRLLSDREWSGRNAVALSAGVNGIYLSRAKLDVGFNDSGRQINSLTARLTGNVAGVMKLFDRCGWQSLMPPCPTSIR
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GUK01_RS22055, DUF2913 family protein
Homolog/Ortholog E-Value: N/A
Locus 16: GUK01_RS22060 (Region 1)
Locus: GUK01_RS22060ORF Start: 24046
ORF Stop: 24381
Strand: Backward
Protein Sequence: MENMLKTMREHFPVRTVVIEQSLDMFGVKRNEDGTLLFPRHSDKRFPVARIRKRLAAYGWRGERLNKEVARIVAGPDILPERRDYSIIFPYGWEKKQLTREMRRMFLRKTG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK01_RS22060, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 17: GUK01_RS22065 (Region 1)
Locus: GUK01_RS22065ORF Start: 24565
ORF Stop: 24981
Strand: Backward
Protein Sequence: MKPAPGAEPVRMYKSPYGGKYGVWRLADCVPMRAKRPQTEKQRLASTRLGLQARMKSERGRFAMLAHTWLALGPVFLDTETTGLDAGAQALEIGLVNARGERIFETRLKPTVGIDPAAAAVQIVTEPYRFPVLSVRLA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK01_RS22065, putative exonuclease, phage(gi126010887), PHAGE_Vibrio_VP882_NC_009016
Homolog/Ortholog E-Value: 6.79e-08
Locus 18: GUK01_RS22070 (Region 1)
Locus: GUK01_RS22070ORF Start: 25067
ORF Stop: 26182
Strand: Backward
Protein Sequence: MRPATYEPEQIIEAGLALQAEGRNITGFALRNQVGGGNPTRLRQIWDEYQASQSTVVTEPVAELPVEVAEEVKAVSAALSERITQLATELNDKAVRAAERRVAEVTRAAGEQTAQAERELADAAQTVDDLEEKLDELQDRYDSLTLALESERSLRQQHDVEMAQLKERLAAAEENTRQREERYQEQKTVLQDALNAEQAQHKNTREDLQKRLEQISAEANARTEELKSERDKVNTLLTRLESQENALASERQQHLATRETLQQRLEQAIADTQARAGEIALERDRVSSLTARLESQEKASSEQLVRMGSEIASLTERCTQLENQRDDARLETMGEKETVAALRGEAEALKRQNQSLMAALSGNKQTGGQNA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK01_RS22070, ORF33, phage(gi9634660), PHAGE_Strept_7201_NC_002185
Homolog/Ortholog E-Value: 9.65e-08
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
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