Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1798961808 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1798961808.PHASTER.zip
gi|00000000|ref|NZ_WXYT01000043.1| Salmonella enterica subsp. enterica serovar Typhimurium strain 7992, gc%: 44.16%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 7.9Kb | incomplete | 30 | 14 | 1-7992 info_outline | PHAGE_Phage_Gifsy_2_NC_010393(7) | 44.16% | Show info_outline |
Region DNA
>1 1-7992 TTTCGTTACCAAAATTTTCGGTGTGGTCTTCCAGCACTTCGCCTGTTTCGGTATCAACAC CATCGACGATATGCTGGCGCGCCGCGGCGGCGGCTTCAGATGATGGCAGGGTGACGCCGG GGATTTGCGTCCAGGTCATATTGTCTTTAGCGAGTTGATAGTAATCGCAGAAAGTGAGGC TCAGTTCGCCTTCCGGCGGCAGCTCGTTAACGACAGGGAAATTAGTAGCGACAGCTTTGA AATAATCTTTCAGCTTCGCACCGGATTTAATCAGAAGATAATCCAGTGTTGCATTTGCCG CTTCAAAATCATCACTGCACCAGAGTACAGCGTCTTTCTGGCCTGATGATTTCTTTGCTT TGCGGACTAAAAATACAGGATTAGTTCCACTCATTGTTTTGTCCTCAATTCGTGTAGAAT GGAGGTGCCTTAACAGCACCCCGATATATCTGGTTGTTAGGTCCGGTTCGCTTTGGTCGG TTGGACCGGACAGGGCACGCCCGCTTCGGTGGGCGTTTTCTTAATGGATGGTCTGATAAA ATTTTTCTGAGTAATCAAGCTTGTAACTTCGGTAATTACCAAACCCTGCTTGTTCTCCAT CACTTACCTTGACTGTGAGCAGCGAAATGGCTTTTACAGCACAATGAGGACAGTCGAACT TTCCGAGTACATATCCACCGTCGAGAATCACAGTGGTTTCGCCAGTTGAATTTGAGTGAA TAACGCCTGAGACTTTCTTTTCGCAATTGAATAAAGCAATGCTCTTATTAACTGCTTTCA GGTTCATTTCGATTTTTACGATTTCCATAATTTCTCCAGTCTTAAATTCAGGGTGTAGGA AGCCACGCCAAATTAATGGCGAATTTTTCATTTCATATTTCGGAACTACTATTTAACTTT CGTGCGCCATCTGGTCGTATTCAGCGCACTGCCTGGAACAATATTCCTTTTCTTTGCGCG CCAGTTGCGAGCCGTTGAGATAGAGAAGGGTGTTTTTTACTTCTTTGCCTTCATCAATGG ATTTGCGGCAGTAACCGCATTGTTTAAGCATCCGGATCTCCTTTCTGCGCCAGCAGGTAG CAGAGGCGGCGGATTAAAACCTCAATCCGGTTGAGCGGGACGGCCTGCTGTCGAGCTGGT TTACGTGCGAAATCAATCATTCTCACCCTCGTTTGCCTTATCGCCGGCCAGCGGAACGTT TATCACCTTCTGCGCGTTAACTTTTCCACCTCATTCCGGTCTTCGTATGCCCCGGACGGC TACTTCGTGGGCGTCCTGCCTGGGTGGTCGTGGTGCGTTTTGGTGATTTCATTAAACACA ATGTTTAAACATATGTCAACATAATGAGTATAAATCAATAAACAAAATGTTTAATCTGAC TTTTGGAGGTGTGATTTATGCCGATTTTGGACAAAAAAAACCAGCCATGAGGCTGGGATC ACTTGCAGTTTTGGGGAAGGGGGCTAAGGATAAAAAACGTCTTTGTTGCCCGGTTAAATT AGAGGTGTTAGTTCAGCGCTTTAAATTTGGTGTATAAACTATTCCCCAGCAGATACTTCA GATCTGCCATGGATCTATAAAATGTACTCGCAACTTCATAGTGAAAATAAGTAATGTAAG TTTCCATTACGGAACTTGTTAATCTATGTAGATTACGAATAAGATTCTTTTGCGATGAAT GGCAGTCGTTTACAAGCAACTGCAAAAAAGTTGCTGACGTGTTAATATTTGCTTGCGGTG AAAAATGCACATAATGACAAGCGTTTATATAAACATTGTGCAGATAGTTCCAATTTTCAT TTCTTCTATTAGATTTAAGGTAATCAAAATCTCGTCGTCGTACCGTTCCATCGAAATCAC CACCAGAATAAGTTTTATTCAAAGCTATTCTTGCTATATGCTCAATCATAGAACGAAGAT TTAAATGTAAATATCGTTCTCTTTTATTTAATATTGCAACGATGGAATTTAAAGAATCAT AAATTATACCCTTCACATGTGATTTGTGTGATAGATTGGTATTCATTTCAATAATCATGC TATAAATTCTAACGTGTTTGAAAACACTTACCAAGGTATTTATATCTGACTCATCACTCA GATACTTAGTTGCCTCTTGGCGAAACCTGTCAGTTTCTGCTCTGTTGCCGTATGGGTCGT TAGAAAGCATTATTTATCGCCTTTCTTAAGCATCCTAGATACCCACAGATCCATATTAGA AAGTGCTGTATTTCTTTTTTTATGGCCTTGCAGGTCTTCTTCTTTAGAAAAAATATTTTC GAAATATGAACGAGCCATAACACCATAGTTATTGATTTCTTTTCTTTCTCTGCTTACTAA AAATCTGCATATTTTTGCGCAAATAAGTGTTCTTGAGCGAACAACGTATGGTAATAGGGC TATGGAAAAGACACTTTCAACAAAATCTTTTACATCATGATTTGATTTTAACAAATCTTT ATCAAGTAAGATGGTCACAAAAAGACCTATCGCGGATTCTTTTGTTACTCCGCCATGGGC AAACCTGAATAGAGTGTTGTATTGTTCTTTATCCATTTTCACTCACCATTAGTTGGTCAA CTCTTAATGCGAATTCTGTTGATATTGCGCTTATATCACTTCTTGACTTTGTATAGCAAG AGGGAATGTTACCCTGCTGCCCAACCATTAAATCTCGTACGTATGATAACTTATGTTCAA AGAAGTAAAATTCACTGAATTTTTCTTCAAAATTATCTTTTATCTTGCTTGTTTTTAATG TCAATTCATCATCAGTATTGGTGTAAACGAATCCTAAGTGTCTAATATTCGGATTATGAT TGTGTCTTACATTTCGCACCACACTGACCAGACTAGTTGCTCCTAAAATGGAGTAGTGAT CAATTTTTACCGGAACGACATAAAAATCTGAAGCAACAAGTGAAGCATCAGTGAAAATTG ATATTGTAGGAGGGCTATCTAGGAAAATATAATCATATTGGTCACGGAGGTTGTTATCAT CGATGAACCTCTTGATTTTGAATATTCTTACAGACTCCTGAGATGTGTCAAAGATTATAT TAATATCACCTAAGATGACGTCGAGGTTATCAGAAACTTTAGTTATAACATCAACAGGTC TAATGGCTTGAGCCGTATCCATAATGGATGTTGGAACTTCGAAAATTCGACGTATTGTGA TTTTATTTGTTTGAAGTTGATCAAGATATTCATCGACACGACCATAATGACCTAGGAGTG ATTGAGTTGCATTGAATTGAGGATCAACATCAATAACTAAAACTCTTTTACCAAGATAGT TAGCCATGAACTCAGCAATGCCAACACATAGAGTTGTTTTTCCTACCCCGCCTTTCATAT TAATAAAGCTAATTACCGATGCTGGCATAATTATTCCTTGCTATGTTGAGAATGAGTCAT TTTGATAATTACTCCGAGCTTTTATCTTAATCTTCGCGCGTTCGAATCCTTCCCTTCATG TACTTCTCGTACATGGCATCCAGTTCCTTGAGACGAAGCGATAATACCCGAAGAAAATTC TGCTTTTCCTCGTCATCTGGAAGCTGGCGATATAGTTCGAGCAGTCTCCGTTCGTCGGCC TTTAAACCGTCCCTCTCGTCGACCTCTTGGCCAAGAACCCACTCAAGACTCACCCCAAGC GCGTCTGCCAGTTTTATCGCCGAGCTTTTCCCAATTGTACCGCGCACAAACCAGTTATTG ACCGACTGAGCACTGACCCCGCAAATGCGAGCCATGTCCGACTTGGTCAACTTTTTAAGT TCGAGGATCTCGTTGAGCCTCTGCACTTGTGGGTGATTAATCTGATGAGTTTTTTCTTTC ATAACACAATTCTAAACCAAAAGTTTATTAGCTCAATATTCAAAATGTTGACATTATGAT AAACATTTTGTTTAATTTGGCTGTTGCCACTGGAGTCAAATATGAAAGCAATTGATAAAG CCATTACCAGAGCAGGAACCGCAACCCGGCTTGCTGAACTACTGGAAGTAAGCGCAATGA CCATCAGTCATTGGCGGAATCGTTATCAAGGAGTGGTTCCTGCCGATCGAGTACTTCCAA TTTACAGCGCTACTGGTGTTACCCCACACGAACTGCGCCCTGATCTCTACCCAAACCCAA CAGATGGATTACCAAGCCAAGAGGCATCAGCCAAACAACCATAGAGGATATTTACCCATG GAGAACGCAATTGCACGAAAGTTAGACCCACCAGAAATCAACCCGATTGAAATAGAGAGC GTCCTGCTCAACCGGCTTGCATCGGTAGGTCAGAAATCTTACGCCGAGCATATGGGCATC AGCGAGTCGACAGTCAGCAGACGTAAAGCTGAGGGATATTTCTGCAACATGGCGAAAGAG CTGGCTTTTCTTGGAATTCAGGCCGCGCCACCGGAGGCGGTACTGGTATCCAGAAACTAT CTCACAGCCGTAGAGATTCTCGCTGATGCCGGGCTAAAGGCTGAACGAGCCAGGCCGGAT GCGCTGGGGTGGGACTGAAAATGGTAGCAACCAAAAAGGCGAAAGCCGCGGTGAGGGGTC ACCAACGGCTTTCTGGTGGAATTAACTGGATCAATTCACAGGAGTAATTATGGCAAACAC TGCTGAAGTAATCAATTTTCCTGTGCCTGACGTGGCACATAAGGAGCCGCGCGTGGCAGA TCTCGATGATGGGTTTACGCGCATCGCCAATGAGATCCTTGAGGCTGTAATGCATGCAGG TTTGTCGCAGCATCAGCTTTTGGTGTTCATGGCTGTCATGCGCAAAACATACGGCTTCAA TAAGAAATCTGACTGGGTCAGTAACGAGCAGCTCTCGGAGCTGACCGGCATTCTCCCTCA TAAGTGCTCATCTGCAAAAAGCGCCCTGGTTAAGCGGGGGATATTAACTCAAACCGGTCG TGTTATCGGGATTAATAAAACGGTCAGCGAATGGTCATCTTTACCTGTAAAAGGTACAGA AAAAAAACCTTACCTGGAAAAGGTAAATTTACCCGAATCAGGTAAGAAAAGTTTACCCGA ATCAGGTAAGAAAAGTTTACCCGAATCAGGTAAGAAAAGTTTACCCGAATCAGGTAACGG CTATTACCCAAATCAGGTAAACACAAAAGACACTATTACAAAAGACAGTAAAGACAATAG TAATAAACCCCCTAAACCCCCCCGGGCGGTTTCGTTCGATGCATCAAGTGTTCAGTTGCC TGACTGGCTGTCTTCGATCATCTGGTCTTCATGGGTTGAATACCGCCGTGACCTGAAAAA GCCGATCAAGTCTCAGCAGACCGTGACGCAGGCTATCAACCTGCTTGACCGCTGCAGGCT GAACGGATACACACCTGAAGAAATTATTAACCGCAGTATTGCGAATGGCTGGCAGGGTCT GTTCGAACCTGACGGACAGGCGAAGCGCAGCAGAGATACCGATCAGGAAAGTATCCACTG GAACAGCCCGGATGCATGGAGGGATTTCCTATGAAACCTGAACTCTACCGCGCAATAAAC AATCGGGATGGCGCAGCGATGGCAAGCATAGCCGGGGGCAACCCTGAGCATGGCCGGGTT GTGAATTCAGACGCTGAGCGCCTTGTTGACGCGCTGTTCATGCAACTGAAGCAGATTTTC CCGGCCGCGACGCAAACCAATCTCCGCTCCGATGCTGACGAGCGAGTAGCTAAGCAGCAG TGGATAGCGGCATTTTCAGAAAATGGCATCCGCACCCGCAAGCAGCTATCCGCCGGAATG CAGAAAGCCCGTTCCAGCCAGTCTCCATTCTGGCCGTCGCCAGGTCAGTTTATTTCGTGG TGCCGTGAGGGGAGTGGAGCACTCGGGGTCAGTGTTGACGACATCATGGGCGAATACTGG CGTTGGCGGAAGCTTGTTTTCCGTTATCCGACCAGTGAGCAGTTCCCCTGGAGAGATAAA AATCCGCTGTATTACCACGTCTGCCTGGAGCTGCGCCGCCGTGGAACTGAGGGGCAATTA AGTGAAAAGGAACTTATCCGGGCCGCTGGCGACATCCTGCATGACTGGGAAAAGCGAGCT CTTGCAGGTAAACCCATACCGCCTGTTTGTCGCGCTTTATCCGCGCCGTCGCGGGATCGC GGTCCAACGCCAGCCGAGTTGTTAATGGCGAAATACAAACAACGCAAAGACGCCGGTCTG ATTTAACAGGAGCAACCAAATGAAAGAACGTGGAATAACTGATGGTTTAACCATGAATCA GCTTGCAGAACGTAATGCTGAACACGTAACTACCATAGCGGCACTGGAAGCCAGATGCGC GGCGCTGGTAGCGGAGAATGTGGGGCTGAAATACCAAGAGCCAGCCGGATACCACGTCAT CAAAGAGTGCGGAAAGGTTGGCTGTAGTGTTGCAACGCTTGAGGAAGCTGAGAAAACGCG AGATTTCTGGAATAAAAAGTGGACTATCAGACCGTATTTCTACTCCGCCCAGCCAGCGTC AGAACGCGAACGTATTCGCCGCGAGCACGCCGAGTGGTCAGATAAGACGTTCGGCGATGT CGGTCCAGTAGGGCCGCTGAAACATCTCTCAAAAGAGGCATTGGAAACTGCCGCAGAACC TGGCGACCTCAGCGAATTGGCTGATATGCAATTCCTGTTATGGGATGCGCAGCGCCGTGC TGGTATTACTGACAAACAGATTACCCGGGCGATGGTGGAAAAGCTGGAGATAAACAAGTC CCGCCAGTGGCCTGAGCCGAAAGATGGTGAGCCTCGCTTGCACATCAAAAAACACCCAGC GCCGGTAGTGCCGGAGGAAATCACGGCGGACGGAATTATAGGAATGCATGAGTGCGGATT TGTGGAGGGTTGGAACGCCTGTCGCGCTGCCATGCTTAGCAAATGGATAACAAAATAAAA CCAAATCTAAATCAAAGCATATTAAGATTTTGGTTATATCATTTCTTTATAATGATGAAA GTAATGTCTTTTTAAGGCTAATGCAATAAATCACAGGAGCATTCAATGAAATACTCTAGA GTTGAACAGTCAACAGGAACGTCGATCGACCATAATTTGGGCTACTTTCTTGATCCTCAG AAGTATGTTCCCATTACTGAATTTGTTGATGAATCGGCCGCATTAATCAAACTCAATCTT ATACATGAAAACTTTCTTTCAATAGTAATCGAAAATCTCCGTCGAGAAGGAACCGAAAAG TTTGTAGATGTTGACAAATACTTTATGCCTAAGATTAAAACCGCCGTCGCACTTGGTCTT CCTGTTTCATTGGCTAAATGCCTCACGGAAATGAACAATATTCGTAATAAGTATGCCCAT AAAATCGAGTATATAATAACCGATGAAGATGCGGAGCGTATTGACTCCTTGATAATGAGT GTCCCCGTTGATGATATTAACCATGCCTCACTAATTGACAGCACCCTAATAACATCCATC ACTAATTTGGGAGCAAGTTCTATCGCCTTTATGAATGATATTCCTAAGGACTTTCCTGAT AATCGGAGGCGAATTTGTAAGTTGGTTGCTATGGCGTTTTGCATCTCTAACTTGGGCGCT TTTTGGCTGCTAAATGAGCTTCATCGGCAAGGAAAACTGAAAATGGGGAGCACAAAAATG GCGTTTAAGCCCTCCTAGCAGGTTATGTAGCTTCTCTATGCTGAGACGCCAGTAAGGGCA AACTTGCCAGAGCTTTGCCAGCCGAATGAAATTGCAGTCTAAAAACTTTAGACAATTTAA CCCGCTTCGGCGGGTTTTTCCGCCTAAAATCTGATATGAAACAACATGCTAGCTTTTGCA AAAAGTGCTATTCACCTCTTGAATATTCTTTCTAACAGGTATACTGTGTTTATATACAGT AGTTAAATGTAGAGGGAATTATGAGAATTGAACTTGTTATCAGCCGGACAAAACAGCTTC CGGAAGGTGCCGTTCCTGCACTTGAAAAAGAATTAATTACCCGTCTCCAGAATCAGTATG AAAACTGCAACT
Region Details
| Region | 1 |
| Region Length | 7.9Kb |
| Completeness(score) | incomplete(30) |
| Specific Keyword | tail |
| Region Position | 1-7992 |
| # tRNA | 0 |
| # Total Proteins | 14 |
| # Phage Hit Proteins | 11 |
| # Hypothetical Proteins | 3 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Phage_Gifsy_2_NC_010393(7) PHAGE_Entero_mEp237_NC_019704(7) PHAGE_Salmon_SPN3UB_NC_019545(7) PHAGE_Phage_Gifsy_1_NC_010392(7) PHAGE_Salmon_SEN34_NC_028699(6) PHAGE_Entero_HK225_NC_019717(4) PHAGE_Salmon_SEN22_NC_028696(1) PHAGE_Entero_phi80_NC_021190(1) PHAGE_Salmon_ST64T_NC_004348(1) PHAGE_Lactob_Lb_NC_047983(1) PHAGE_Entero_EF62phi_NC_017732(1) PHAGE_Escher_HK639_NC_016158(1) PHAGE_Entero_UAB_Phi20_NC_031019(1) PHAGE_Salmon_BTP1_NC_042346(1) PHAGE_Entero_mEpX1_NC_019709(1) PHAGE_Salmon_SE1_NC_011802(1) PHAGE_Salmon_ST160_NC_014900(1) PHAGE_Cronob_phiES15_NC_018454(1) PHAGE_Entero_Tyrion_NC_031077(1) PHAGE_Lactob_LF1_NC_019486(1) PHAGE_Salmon_vB_SemP_Emek_NC_018275(1) |
| First Most Common Phage # | 7 |
| First Most Common Phage % | 50% |
| GC % | 44.16% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NZ_WXYT01000043.1| Salmonella enterica subsp. enterica serovar Typhimurium strain 7992, gc%: 44.16%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 14 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(1..394) | PHAGE_Phage_Gifsy_2_NC_010393: putatitive bacteriophage exodeoxyribonuclease VIII; GUK00_RS23320; phage(gi169257272) | 3.34e-87 | Showinfo_outline |
| 2 | complement(521..871) | PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GUK00_RS23325; phage(gi169257273) | 1.16e-45 | Showinfo_outline |
| 3 | complement(893..1051) | PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GUK00_RS23330; phage(gi169257274) | 2.06e-29 | Showinfo_outline |
| 4 | complement(1508..2170) | hypothetical protein; GUK00_RS23335 | 0.0 | Showinfo_outline |
| 5 | complement(2170..2556) | hypothetical protein; GUK00_RS23340 | 0.0 | Showinfo_outline |
| 6 | complement(2549..3388) | PHAGE_Lactob_Lb_NC_047983: minor tail protein; GUK00_RS23345; phage(gi100055) | 2.71e-13 | Showinfo_outline |
| 7 | complement(3447..3842) | PHAGE_Entero_mEp237_NC_019704: hypothetical protein; GUK00_RS23350; phage(gi435439303) | 1.17e-52 | Showinfo_outline |
| 8 | 3942..4184 | PHAGE_Phage_Gifsy_2_NC_010393: putative bacteriophage regulatory protein; Lambda gpCro analog; GUK00_RS23355; phage(gi169257277) | 3.35e-13 | Showinfo_outline |
| 9 | 4144..4518 | PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage transcriptional activator; Lambda gpCII analog; GUK00_RS23360; phage(gi169257278) | 5.90e-72 | Showinfo_outline |
| 10 | 4610..5494 | PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; Lambda gpo homolog; GUK00_RS23365; phage(gi169257279) | 3.11e-49 | Showinfo_outline |
| 11 | 5491..6186 | PHAGE_Escher_HK639_NC_016158: replication protein 14; GUK00_RS23370; phage(gi356870655) | 8.12e-70 | Showinfo_outline |
| 12 | 6200..6898 | PHAGE_Entero_UAB_Phi20_NC_031019: minor tail protein; GUK00_RS23375; phage(gi100055) | 8.62e-60 | Showinfo_outline |
| 13 | 7006..7638 | hypothetical protein; GUK00_RS23380 | 0.0 | Showinfo_outline |
| 14 | 7881..7992 | PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage damage-inducible protein DinI; GUK00_RS23385; phage(gi169257284) | 2.36e-19 | Showinfo_outline |
Sequence
>complement(1..394)
SalmonellaentericasubspentericaserovarTyphimuriumMSGTNPVFLVRKAKKSSGQKDAVLWCSDDFEAANATLDYLLIKSGAKLKDYFKAVATNFPVVNELPPEGELSLTFCDYYQLAKDNMTWTQIPGVTLPSSEAAAAARQHIVDGVDTETGEVLEDHTENFGNEA
Sequence
>complement(521..871)
SalmonellaentericasubspentericaserovarTyphimuriumMKNSPLIWRGFLHPEFKTGEIMEIVKIEMNLKAVNKSIALFNCEKKVSGVIHSNSTGETTVILDGGYVLGKFDCPHCAVKAISLLTVKVSDGEQAGFGNYRSYKLDYSEKFYQTIH
Sequence
>complement(893..1051)
SalmonellaentericasubspentericaserovarTyphimuriumMLKQCGYCRKSIDEGKEVKNTLLYLNGSQLARKEKEYCSRQCAEYDQMAHES
Sequence
>complement(1508..2170)
SalmonellaentericasubspentericaserovarTyphimuriumMLSNDPYGNRAETDRFRQEATKYLSDESDINTLVSVFKHVRIYSMIIEMNTNLSHKSHVKGIIYDSLNSIVAILNKRERYLHLNLRSMIEHIARIALNKTYSGGDFDGTVRRRDFDYLKSNRRNENWNYLHNVYINACHYVHFSPQANINTSATFLQLLVNDCHSSQKNLIRNLHRLTSSVMETYITYFHYEVASTFYRSMADLKYLLGNSLYTKFKALN
Sequence
>complement(2170..2556)
SalmonellaentericasubspentericaserovarTyphimuriumMDKEQYNTLFRFAHGGVTKESAIGLFVTILLDKDLLKSNHDVKDFVESVFSIALLPYVVRSRTLICAKICRFLVSRERKEINNYGVMARSYFENIFSKEEDLQGHKKRNTALSNMDLWVSRMLKKGDK
Sequence
>complement(2549..3388)
SalmonellaentericasubspentericaserovarTyphimuriumMPASVISFINMKGGVGKTTLCVGIAEFMANYLGKRVLVIDVDPQFNATQSLLGHYGRVDEYLDQLQTNKITIRRIFEVPTSIMDTAQAIRPVDVITKVSDNLDVILGDINIIFDTSQESVRIFKIKRFIDDNNLRDQYDYIFLDSPPTISIFTDASLVASDFYVVPVKIDHYSILGATSLVSVVRNVRHNHNPNIRHLGFVYTNTDDELTLKTSKIKDNFEEKFSEFYFFEHKLSYVRDLMVGQQGNIPSCYTKSRSDISAISTEFALRVDQLMVSENG
Sequence
>complement(3447..3842)
SalmonellaentericasubspentericaserovarTyphimuriumMKEKTHQINHPQVQRLNEILELKKLTKSDMARICGVSAQSVNNWFVRGTIGKSSAIKLADALGVSLEWVLGQEVDERDGLKADERRLLELYRQLPDDEEKQNFLRVLSLRLKELDAMYEKYMKGRIRTRED
Sequence
>3942..4184
SalmonellaentericasubspentericaserovarTyphimuriumMKAIDKAITRAGTATRLAELLEVSAMTISHWRNRYQGVVPADRVLPIYSATGVTPHELRPDLYPNPTDGLPSQEASAKQP
Sequence
>4144..4518
SalmonellaentericasubspentericaserovarTyphimuriumMDYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNRLASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTAVEILADAGLKAERARPDALGWD
Sequence
>4610..5494
SalmonellaentericasubspentericaserovarTyphimuriumMANTAEVINFPVPDVAHKEPRVADLDDGFTRIANEILEAVMHAGLSQHQLLVFMAVMRKTYGFNKKSDWVSNEQLSELTGILPHKCSSAKSALVKRGILTQTGRVIGINKTVSEWSSLPVKGTEKKPYLEKVNLPESGKKSLPESGKKSLPESGKKSLPESGNGYYPNQVNTKDTITKDSKDNSNKPPKPPRAVSFDASSVQLPDWLSSIIWSSWVEYRRDLKKPIKSQQTVTQAINLLDRCRLNGYTPEEIINRSIANGWQGLFEPDGQAKRSRDTDQESIHWNSPDAWRDFL
Sequence
>5491..6186
SalmonellaentericasubspentericaserovarTyphimuriumMKPELYRAINNRDGAAMASIAGGNPEHGRVVNSDAERLVDALFMQLKQIFPAATQTNLRSDADERVAKQQWIAAFSENGIRTRKQLSAGMQKARSSQSPFWPSPGQFISWCREGSGALGVSVDDIMGEYWRWRKLVFRYPTSEQFPWRDKNPLYYHVCLELRRRGTEGQLSEKELIRAAGDILHDWEKRALAGKPIPPVCRALSAPSRDRGPTPAELLMAKYKQRKDAGLI
Sequence
>6200..6898
SalmonellaentericasubspentericaserovarTyphimuriumMKERGITDGLTMNQLAERNAEHVTTIAALEARCAALVAENVGLKYQEPAGYHVIKECGKVGCSVATLEEAEKTRDFWNKKWTIRPYFYSAQPASERERIRREHAEWSDKTFGDVGPVGPLKHLSKEALETAAEPGDLSELADMQFLLWDAQRRAGITDKQITRAMVEKLEINKSRQWPEPKDGEPRLHIKKHPAPVVPEEITADGIIGMHECGFVEGWNACRAAMLSKWITK
Sequence
>7006..7638
SalmonellaentericasubspentericaserovarTyphimuriumMKYSRVEQSTGTSIDHNLGYFLDPQKYVPITEFVDESAALIKLNLIHENFLSIVIENLRREGTEKFVDVDKYFMPKIKTAVALGLPVSLAKCLTEMNNIRNKYAHKIEYIITDEDAERIDSLIMSVPVDDINHASLIDSTLITSITNLGASSIAFMNDIPKDFPDNRRRICKLVAMAFCISNLGAFWLLNELHRQGKLKMGSTKMAFKPS
Sequence
>7881..7992
SalmonellaentericasubspentericaserovarTyphimuriumMRIELVISRTKQLPEGAVPALEKELITRLQNQYENCNT
Salmonella enterica subsp
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 7992 bps
Phages: 1
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Locus 1: GUK00_RS23320 (Region 1)
Locus: GUK00_RS23320ORF Start: 1
ORF Stop: 394
Strand: Backward
Protein Sequence: MSGTNPVFLVRKAKKSSGQKDAVLWCSDDFEAANATLDYLLIKSGAKLKDYFKAVATNFPVVNELPPEGELSLTFCDYYQLAKDNMTWTQIPGVTLPSSEAAAAARQHIVDGVDTETGEVLEDHTENFGNEA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK00_RS23320, putatitive bacteriophage exodeoxyribonuclease VIII, phage(gi169257272), PHAGE_Phage_Gifsy_2_NC_010393
Homolog/Ortholog E-Value: 3.34e-87
Locus 2: GUK00_RS23325 (Region 1)
Locus: GUK00_RS23325ORF Start: 521
ORF Stop: 871
Strand: Backward
Protein Sequence: MKNSPLIWRGFLHPEFKTGEIMEIVKIEMNLKAVNKSIALFNCEKKVSGVIHSNSTGETTVILDGGYVLGKFDCPHCAVKAISLLTVKVSDGEQAGFGNYRSYKLDYSEKFYQTIH
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK00_RS23325, hypothetical protein, phage(gi169257273), PHAGE_Phage_Gifsy_2_NC_010393
Homolog/Ortholog E-Value: 1.16e-45
Locus 3: GUK00_RS23330 (Region 1)
Locus: GUK00_RS23330ORF Start: 893
ORF Stop: 1051
Strand: Backward
Protein Sequence: MLKQCGYCRKSIDEGKEVKNTLLYLNGSQLARKEKEYCSRQCAEYDQMAHES
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK00_RS23330, hypothetical protein, phage(gi169257274), PHAGE_Phage_Gifsy_2_NC_010393
Homolog/Ortholog E-Value: 2.06e-29
Locus 4: GUK00_RS23335 (Region 1)
Locus: GUK00_RS23335ORF Start: 1508
ORF Stop: 2170
Strand: Backward
Protein Sequence: MLSNDPYGNRAETDRFRQEATKYLSDESDINTLVSVFKHVRIYSMIIEMNTNLSHKSHVKGIIYDSLNSIVAILNKRERYLHLNLRSMIEHIARIALNKTYSGGDFDGTVRRRDFDYLKSNRRNENWNYLHNVYINACHYVHFSPQANINTSATFLQLLVNDCHSSQKNLIRNLHRLTSSVMETYITYFHYEVASTFYRSMADLKYLLGNSLYTKFKALN
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK00_RS23335, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: GUK00_RS23340 (Region 1)
Locus: GUK00_RS23340ORF Start: 2170
ORF Stop: 2556
Strand: Backward
Protein Sequence: MDKEQYNTLFRFAHGGVTKESAIGLFVTILLDKDLLKSNHDVKDFVESVFSIALLPYVVRSRTLICAKICRFLVSRERKEINNYGVMARSYFENIFSKEEDLQGHKKRNTALSNMDLWVSRMLKKGDK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK00_RS23340, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 6: GUK00_RS23345 (Region 1)
Locus: GUK00_RS23345ORF Start: 2549
ORF Stop: 3388
Strand: Backward
Protein Sequence: MPASVISFINMKGGVGKTTLCVGIAEFMANYLGKRVLVIDVDPQFNATQSLLGHYGRVDEYLDQLQTNKITIRRIFEVPTSIMDTAQAIRPVDVITKVSDNLDVILGDINIIFDTSQESVRIFKIKRFIDDNNLRDQYDYIFLDSPPTISIFTDASLVASDFYVVPVKIDHYSILGATSLVSVVRNVRHNHNPNIRHLGFVYTNTDDELTLKTSKIKDNFEEKFSEFYFFEHKLSYVRDLMVGQQGNIPSCYTKSRSDISAISTEFALRVDQLMVSENG
Homolog/Ortholog Species: Tail protein
Homolog/Ortholog Protein: GUK00_RS23345, minor tail protein, phage(gi100055), PHAGE_Lactob_Lb_NC_047983
Homolog/Ortholog E-Value: 2.71e-13
Locus 7: GUK00_RS23350 (Region 1)
Locus: GUK00_RS23350ORF Start: 3447
ORF Stop: 3842
Strand: Backward
Protein Sequence: MKEKTHQINHPQVQRLNEILELKKLTKSDMARICGVSAQSVNNWFVRGTIGKSSAIKLADALGVSLEWVLGQEVDERDGLKADERRLLELYRQLPDDEEKQNFLRVLSLRLKELDAMYEKYMKGRIRTRED
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK00_RS23350, hypothetical protein, phage(gi435439303), PHAGE_Entero_mEp237_NC_019704
Homolog/Ortholog E-Value: 1.17e-52
Locus 8: GUK00_RS23355 (Region 1)
Locus: GUK00_RS23355ORF Start: 3942
ORF Stop: 4184
Strand: Forward
Protein Sequence: MKAIDKAITRAGTATRLAELLEVSAMTISHWRNRYQGVVPADRVLPIYSATGVTPHELRPDLYPNPTDGLPSQEASAKQP
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK00_RS23355, putative bacteriophage regulatory protein, Lambda gpCro analog, phage(gi169257277), PHAGE_Phage_Gifsy_2_NC_010393
Homolog/Ortholog E-Value: 3.35e-13
Locus 9: GUK00_RS23360 (Region 1)
Locus: GUK00_RS23360ORF Start: 4144
ORF Stop: 4518
Strand: Forward
Protein Sequence: MDYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNRLASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTAVEILADAGLKAERARPDALGWD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK00_RS23360, bacteriophage transcriptional activator, Lambda gpCII analog, phage(gi169257278), PHAGE_Phage_Gifsy_2_NC_010393
Homolog/Ortholog E-Value: 5.90e-72
Locus 10: GUK00_RS23365 (Region 1)
Locus: GUK00_RS23365ORF Start: 4610
ORF Stop: 5494
Strand: Forward
Protein Sequence: MANTAEVINFPVPDVAHKEPRVADLDDGFTRIANEILEAVMHAGLSQHQLLVFMAVMRKTYGFNKKSDWVSNEQLSELTGILPHKCSSAKSALVKRGILTQTGRVIGINKTVSEWSSLPVKGTEKKPYLEKVNLPESGKKSLPESGKKSLPESGKKSLPESGNGYYPNQVNTKDTITKDSKDNSNKPPKPPRAVSFDASSVQLPDWLSSIIWSSWVEYRRDLKKPIKSQQTVTQAINLLDRCRLNGYTPEEIINRSIANGWQGLFEPDGQAKRSRDTDQESIHWNSPDAWRDFL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK00_RS23365, bacteriophage DNA replication protein, Lambda gpo homolog, phage(gi169257279), PHAGE_Phage_Gifsy_2_NC_010393
Homolog/Ortholog E-Value: 3.11e-49
Locus 11: GUK00_RS23370 (Region 1)
Locus: GUK00_RS23370ORF Start: 5491
ORF Stop: 6186
Strand: Forward
Protein Sequence: MKPELYRAINNRDGAAMASIAGGNPEHGRVVNSDAERLVDALFMQLKQIFPAATQTNLRSDADERVAKQQWIAAFSENGIRTRKQLSAGMQKARSSQSPFWPSPGQFISWCREGSGALGVSVDDIMGEYWRWRKLVFRYPTSEQFPWRDKNPLYYHVCLELRRRGTEGQLSEKELIRAAGDILHDWEKRALAGKPIPPVCRALSAPSRDRGPTPAELLMAKYKQRKDAGLI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK00_RS23370, replication protein 14, phage(gi356870655), PHAGE_Escher_HK639_NC_016158
Homolog/Ortholog E-Value: 8.12e-70
Locus 12: GUK00_RS23375 (Region 1)
Locus: GUK00_RS23375ORF Start: 6200
ORF Stop: 6898
Strand: Forward
Protein Sequence: MKERGITDGLTMNQLAERNAEHVTTIAALEARCAALVAENVGLKYQEPAGYHVIKECGKVGCSVATLEEAEKTRDFWNKKWTIRPYFYSAQPASERERIRREHAEWSDKTFGDVGPVGPLKHLSKEALETAAEPGDLSELADMQFLLWDAQRRAGITDKQITRAMVEKLEINKSRQWPEPKDGEPRLHIKKHPAPVVPEEITADGIIGMHECGFVEGWNACRAAMLSKWITK
Homolog/Ortholog Species: Tail protein
Homolog/Ortholog Protein: GUK00_RS23375, minor tail protein, phage(gi100055), PHAGE_Entero_UAB_Phi20_NC_031019
Homolog/Ortholog E-Value: 8.62e-60
Locus 13: GUK00_RS23380 (Region 1)
Locus: GUK00_RS23380ORF Start: 7006
ORF Stop: 7638
Strand: Forward
Protein Sequence: MKYSRVEQSTGTSIDHNLGYFLDPQKYVPITEFVDESAALIKLNLIHENFLSIVIENLRREGTEKFVDVDKYFMPKIKTAVALGLPVSLAKCLTEMNNIRNKYAHKIEYIITDEDAERIDSLIMSVPVDDINHASLIDSTLITSITNLGASSIAFMNDIPKDFPDNRRRICKLVAMAFCISNLGAFWLLNELHRQGKLKMGSTKMAFKPS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK00_RS23380, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 14: GUK00_RS23385 (Region 1)
Locus: GUK00_RS23385ORF Start: 7881
ORF Stop: 7992
Strand: Forward
Protein Sequence: MRIELVISRTKQLPEGAVPALEKELITRLQNQYENCNT
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK00_RS23385, bacteriophage damage-inducible protein DinI, phage(gi169257284), PHAGE_Phage_Gifsy_2_NC_010393
Homolog/Ortholog E-Value: 2.36e-19
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download