Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1820382672 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1820382672.PHASTER.zip
gi|00000000|ref|NZ_WSUP01000005.1| Salmonella enterica subsp. enterica serovar Typhi strain PHL3828 144573, gc%: 52.55%
Download summary as .txt file: summary.txt file_download
Total: 2 prophage regions have been identified, of which 0 regions are intact, 2 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.4Kb | incomplete | 30 | 9 | 107304-115704 info_outline | PHAGE_Escher_500465_2_NC_049343(5) | 53.27% | Show info_outline |
| 2 | 6Kb | incomplete | 30 | 8 | 128465-134540 info_outline | PHAGE_Salmon_103203_sal5_NC_031946(3) | 40.34% | Show info_outline |
Region DNA
>1 107304-115704 ATGCATCCCATCTCCGGCGCCCCTGCACAGCCTCCAGGCGAAGGGCGTAATCCTCTTTCC GCTGCGAGCGAGCAGCCGCTTTCCATGCAACAGCGTACGGTACTGGAAAGGCTGATCACG CGCCTGATTTCACTGACCCAGCAGCAAAGCGCGGAAGTATGGGCCGGAATGAAACACGAT CTGGGGATAAAAAATGACGCGCCGCTACTGTCGCGCCACTTCCCCGCCGCTGAACAGAAT CTTACCCAGCGTCTGGGCGTAGCGCAGCAAAATCACGCCAATCGTCAGGTGCTTTCACAG CTAACAGAGCTGCTTGGCGTCGGGAATAATCGTCAGGCCGTCAGCGATTTTATCCGTCAA CAATACGGTCAAACCGCGCTTAGCCAGCTTACGCCCGATCAACTCAAAAACGTGCTGACG CTCCTGCAACAGGGGCAGCTTTCCATTCCGCAGCCGCAACAACGTCCGGCAACGGATCGG CCATTATTGCCTGCTGAACATAATACGTTGAATCAGTTGGTGACGAAGCTGGCGGCCGCG ACCGGCGAGTCAAACAAACTTATCTGGCAATCAATGCTGGAACTCTCCGGCGTGAAAAGC GGCGAGCTCATTCCGGCAAAACAGTTTACCCATCTGGCGACATGGCTACAGGCGCGGCAG ACGCTGTCACTACAACACGCGCCTACGCTACATACGCTGCAAGCTGCGTTAAAACAACCG CTGGAACCGGACGAACTCACAGCGATCAAAGAGTATGCCCAACACACTTATCAAATTCAG CCGCAAACGGTGCTGACCACCGCGCAGGTGCAGGATTTACTTAACCATATTTTCCTGCGT CGCGTAGAGCGGGAGGCGGATGAGCTCGAACCGCTCTCTATTCAACCCATCTACCGCCCG TTTGCGCCGATGATTGAAACCGTGAAAAATCTGTCTGCGCGACCAGGCCTGTTGTTTATC GCGCTAATAATTGTACTGGCGCTTTTCTGGCTGGTTTCTTAACCGCGCCGGAACGATAAT ATCGTCACCAGGATGCCAACCACCGCGGAGATCGCTCCCGCGAGGAATACGGAAGGATAG CCGTATGACGTGGCCAGCATGCCCGCCAGCGGGCCGGTAACGCCGTAGGAGATATCCTGA AACGCGGCGTAGCCGCCGAGCGCCGTACCGCGTACCTGTGCAGGTACGCGTTTCACAACC TCCACGCCCAGCGCCGAGAAAATCAGTGAACACCCTGCCCCGGTGAGCGCCGCGCCTACC AGCGCTATCCAGGCCGTCGGCGCCAGCCACAAGAGCAGCAACCCTGCCGTCTCAACCAGC AATGAGACAACGGCGACCTTCACGCCGCCAAAGCGATCCGGCATCCAACCGAACAATATG CGCATCAGTACAAACGCACCGCCAAACGCGGTCAGGGTGAATCCCGCCATCGTCCAGCCA TTGCTGACAAAATAAAGTGAAATAAACGTACCGATGACGGCAAAGCCCACGCCCTGCAAT GCCAGGCCCAGGCCCGGTTTCCAGATAAGCCCGACCACGCTCCACAGTGAAGGTCGCTCC CCCGTATACGCAGGCACTTTACGCACGGTGCCGTTGAATGCCCAGGCCAGCAGCGGTAAA ACCATCGTCGTCCCCGCCAGCGCCGCGAAGCCAAAGTGGCTATGGATCAGCAAGCCCAAC GGCGCACCGGCCGCCAGCGCGCCGTAAATCGCCATCCCGTTCCACGACATCACCTTACCG GAACGCGTTGGGCCAACCAGCCCCAGTCCCCAGGTCAGGGTTCCGGTCAGCAGCTGGCTT TCGCCAAATCCGAGGATCAAACGCCCAACAATAAGCAGCGCGAATTTTACCGGCGCGGAA ACCGGCAACAGCGCGGCCAGGAGCCAGGCGGCGCCCGCCAGCCCGCAGGCAAGCATCCCC TGTAACGCCGATCGTTTAGCGCCATATTGATCCGCCAGCCGTCCGGCATAGCCGCGCGTC AGTACCGTCGCAAAAAACTGAATGCCCACGGCGATCCCAACCATCGTATTGCTATAGCCC AGTTCGTGATGGACAAAAAGCGGAATGACCGGTAACGGCAGGCCGACCGTCATATAGGTC AGGAAAACCGCAAAGGCGATGCGGAACAGCGAAAAATCCGCAGACGGGGTCGTTGTTTTT TGGCTAACTGCTGTCATGCATTACTCCAGAATGCAGAGTAAGGCGGGGAAAGGCCACGCC CCCCTCTACCTGAACGTCAGGATTAAGGTGCGTTGGATAACGTTAAACGCTTACGCATTA TCGGAAGGATAATGTAGAAAGTGAAGTCTGCCTGTGAGACGCGAAACTTGTCAACCTTGA AATTGCAGCCAGGGTATCAACGCGGCGGCGTGTCATCAAACAGAAAGAGAAAGACCGCTT TCATCCCTCTCACCTTAAACCGTCCAGTCACCTGCTTGCGCTGTTCTGGCGTCAGTAACC TGAACATCATCTCCCAGATATCTTCAGGCTCCGCTTCCTGTAAGGAAATGGGTTCTGGCG TCGGTTCCTCTCCGCTGTCGTCCAGATAACGATGAACATAGAGAGGGAAAACAGATATAT GAAACTCCTCGGCCTTTGATTTAACACGCTTACGCCTGACCCCCGCTTTCCCTTCACTGT ACTTATATAAACGTTCGCGAACCGCAGGCTCGCTTCCCGGAAACCCCGGTAAGCCAAGAC ATTCCTTAACCGTGAACCATTCCTTTGCCATCGGTTTCTTTCCTTTCCCCTGATGAAATA AAAATATTTCTTCTTTTTCGCGAAATTTTGCTTTCTTTCTGGCACTATTCTTAGCGTGAA AAAGAAAGTAACTTCCTTTTCCATGCGCTAATTTTATCTTAAAAATATCGGCGCCGATAA CACATCTTCTTAGGATTACAGAATGGAACCAAAAAGCCAAGACTGGCATCGTGCAGATAT TAAAAGTGCACTGGAAAAAAGAGGTATTACGCTCAGAGATCTTTCTCGTCAGGCCGGTTT ATCACCTGATTCACTGCGCAATGTCTTTACCCGTTCCTGGCCGAGAGCCGAACGGATTAT TGCGGACGCGCTGGGCATCACGCCGCAGGAGATCTGGCCGTCGCGCTATGGCGATATGCA AATAAAAAATGATGCCGATATCGCAGAATAATAGTTAATGCTGAATAAATTGGCTTTAAC TTATCAATCTCAACAATTAATAAATATTTAAACTTATTATATTGAAAATAGTAATAGCAC GATCTGTCATGCTTCCCGAATCAAATACTGTTAAAGCATTACGTAATTGCTATTACGTAT TTTATTAACAGGAATCATTATGAGTTGGGATAAAAGAGTGGCGGTTAATTATGCCAAAAC GCATGCAGGTTCTCATTCTCAAGGCCGGTGTGCGGAATTTACCCGAAAGGCAATTCAGGC GGGCGGTATCACGCTGGGGCATACATATCATGCGAAAGATTATGGCCCAATGTTAAGAAG CGCCGGATTCACCGCTATTGGTACCTATGAAATGCCGCGCGAGGGTGACGTCATCATTAT TCAACCTTACGCTGGCGGAAACCCGAGCGGTCACATGGCGATATACGATGGCGCAGAGTG GTATTCAGATTTTAAACAACGCGATATGTGGGCCGGCCCGGGCTACCGGGCAGCCAGGCC CTCATATACCATCTACAGGAAGAATTAATGAAAACGTTCTCCCTTGTCGCGCTTATCCTG TTGCTTTGTAGTTGCTCTGCGCCTCATCACGACAGTACGCAGGCCGTGAAGCAGTTCTAT ACCTCATGGATGACGACGTTCATGAACGATGTGAATACCCCTGACGACACCACCGCCTTA ATGCAACGTTACGTTGCTAAAGAGGTTATTCATCGCCTGGCGCTAATACAGTCCCTTTAT GAACAGGAGATTGTAGGGGCAGATTATTTTATGTATGCGCAGGACTATGCGCCAGAGTGG ATTCCACAGTTACGGGTTGGGAAGGCACACCCTTTCCTCGGCGGAGAAAAAGTGGATGTT CTGTTGGCTACAGAGTCAACGCCCATCCACCTGGAAGTTTATACCCGTTGGGAAGAGGGA CGCTGGAAAATTTACCGCGTTCGGGATGCTGATAAGGATTATGAACAGCCGATTTATGAC GCAGGCGCCATCACCCAGGCTGAGGCCTGGTCAGCAAAAGTCGCGCCGGAATATGAGAAG CATTAAAAAAGGGAACCGCCATCGTTCTCTTGTTCGTACCGGAGAGGTTAAAGAGCCTAT TTCATCAGGCTCTTATTCCGTCGCTGAAAACAGCAAGCCGAAAATAACCCAGGCATTATT TAAAATATGAAGTGTTATCGGTATCATTAGTCCACGGCTTCTCATTCGAACAACGCATAA TATCGATGAAAAAACAAACAGATAAACAAAAGTCACCGCAAAGAGATATTGTGTATGCAT AAATGCAAAAGCGAGTGAAGTAATAATAATACCGGAAACTCTTGAGTATCGACCCCAACC GATACTGCTGTTTAATAAAAACCCTCTGAATATAATTTCCTCCGCCACAGGAGCCAGAAA GCACATCACCAGCGTGTTAAGAAATTTATGAAGAAAAAATTGCCTTGATAACTCGGCCAT CCAGGGTTCCGGGCCACTAAAAACATTGTAGAGAACGGTAAGGCACACCAGGGCCAGCGC CGGAACAAAACATTCCACAAATGATAAGCGGCCCAATGATAAAAACGGATAATACTTTGA ATAAATACTCCAGGCGGCAATCGCGTAGACAAAAACAATACTATATATAAAAGGCGCAGC CAGACCTCCCAAATAAAGCCAGGCATAGGAAGGCGAAAATGAGGCAAAAACAAAAATGCC GAACAAACCAAATAAAACAGCCACACAACTCAAACTATGCCTAATTTTATCTAATGTATT AGTTGGCATTTATATAATATCCATATAATTTGTTGTTCCCTGAATGAAAAAACAGGTCGC ATTAGCGACCTGTTTCATTGTTGATACTACAACGTAATAGTCAGGCTTACAACTTACGCA TCACCAGCGTGGCGTTGGTGCCGCCAAAACCGAAGCTGTTAGACATTACGGTAGTCAGTT CACGCTCGGTCGTTTCGGTCACGATGTTCAGGCCCGCAGCCTGCTCATCCAGCTCTTCGA TGTTGATACTCGGCGCGATAAAACCGTGCTCCAGCATTAGCAGAGAGTAGATGGCTTCCT GCACGCCAGCCGCGCCCAGCGAGTGGCCGGTCATCGCTTTGGTTGCAGAAATTGCCGGGC TGTTATCGCCAAACACTTCACGGATTGCACCGAGTTCTTTCACGTCGCCTACCGGCGTGG ACGTACCGTGAGAGTTCAGGTAGTCGATCGGCGTGTCTACGCCGTGCATCGCCATCTGCA TGCAACGTACTGCGCCTTCGCCAGACGGAGCAACCATGTCTGCGCCATCGGATGTTGCGC CATAGCCGACGATTTCCGCATAGATATGCGCGCCGCGCGCCAGAGCGTGCTCCAGCTCTT CGACAACAACCATACCGCCACCGCCCGCGATGACAAACCCATCACGGTGCGCATCATAGG TACGGGACGCTTTTTCAGGCGTATCGTTATATTTGGTGGACAGTGCCCCCATCGCATCGA ACTCACAGGCCATTTCCCAGCACAGCTCTTCGCCGCCGCCAGCAAAAACGATGTCCTGTT TGCCCAGTTGGATCTGTTCAACCGCATTGCCGATACAGTGTGCGGAGGTCGCGCAAGCGG AGCTAATGGAGTAGTTCACGCCATAAATTTTAAACGGCGTAGCGAGGCAGGCGGAAACGC CGGATGCCATTGCTTTCGTCACCACATACGGGCCCACAGCTTTCAGACCACGCGGGCTAC GCATGGCGTCTGCGCCAAAGACCTGGAATTTCGGGGAGCCGCCGCCGGAACCTGCAATCA GGCCGACACGCGGGTTATTCTGATAGACTTCCGGCGCCAGACCGGCGTCGGCCACTGCCT GCTCCATAGACAGATAAGCATAGATGGAGGCGTCGCTCATAAAGCGCACGACTTTGCGGT CAATGAGGCCAGTGGTATCCAGTTTTACGTTGCCCCATACCTGGCTACGCATGCCGGCGT CCTTCAGCTCCTGAGAGAAAGTGATCCCTGAACGTCCTTCACGCAGAGATGCCAGGACTT CCTGCTGGTTATTACCGATGCTGGAAACGATGCCCAGGCCAGTAATCACTGCACGTTTCA TTCAATACCTCTGTAATTCGCACTATTTTTAAGTTTCGATTGGCACAATAGCGTACACTT GTACGCCGAACAAGTCCGATCAGCCATTTAGTACGGAAATTTGCGCCATCAGGCACACAT CGTTAAGATCGCGATACCGCCCGTCAGACGAGTAACTTACGTGAAACAATACGCCATACA ACCCGCCACACTCGAATTTAACGCTGAGGGTACACCTGTTTCCCGAGATTTTGATGATGT CTATTTTTCTAATGACAATGGACTCGAAGAGACACGCTACGTTTTTCTTGGCGGCAATCG TCTTGCGGAGCGATTTCCCGTACATTCACATCCATTATTTATAGTCGCGGAAAGCGGTTT TGGCACCGGACTCAACTTCCTGACGCTGTGGCAGGCGTTTGACAGCTTTCGTTCTGCGCA CCCACAGGCGACGCTGCAAAGGTTACATTTCATCAGCTTTGAGAAATTCCCGTTAACGCG CGACGATCTGGCGCTGGCGCACCAACACTGGCCGGAGCTCGCGCCCTGGGCAGAGCAGCT GCAGGCGCAATGGCCGCTGCCGCTCCCGGGGTGCCACCGCCTATTGCTGGATCGGGGTCG GGTGACGCTGGATTTGTGGTTTGGCGATATTAATGAGCTGACCGACCAACTGGACGCCAC GCTGAATCAAACAGTCGACGCCTGGTTCCTCGACGGTTTTGCCCCGGCGAAAAATCCGGA TATGTGGACGCCAAACCTGTTTAACGCGATGGCGCGGCTGGCGCGGCCCGGCGCAACGCT GGCGACGTTTACCTCGGCGGGTTTCGTCCGTCGGGGATTACAGGAAGCCGGTTTTACCAT GCAAAAACACAAAGGCTTCGGACGTAAACGCGAGATGCTTTGTGGAGTGATGGAACAACA CCTCATGCCGACCCTTTCCGCGCCCTGGTTTTACTGCAGCGGAAGCGAAAAACGTGAAAC GGCGATCATTGGCGGCGGCATCGCCAGCGCGCTGTTATCACTGGCGTTACTGCGTCGCGG CTGGCAGGTGACGCTCTATTGCGCAGATGATCAGCCCGCCCAGGGCGCTTCCGGTAATCG ACAGGGCGCGCTTTATCCGCTCCTTAGCAAACATGACGCCGCCATTAATCGCTTTTTCCC GACCGCATTCACCTTTGCCCGTCGCCTGTATGATGCCCTGCCCGTCTCTTTTGATCATGC CTGGTGCGGCGTGACACAGCTCGGATGGGATGAGAAAAGCCAGCAGAAAATTGCCCAGAT GCTGTCCCTGGCGCTGCCCGCCGGACTGGCCTCGGCGCTCAATGCCGAAGAGGCGGAACA GGCGGTTGGCGTGACGACACGCTGCGGAGGAATTACCTATCCGGCAGGCGGCTGGCTGTG CCCGGAACAATTAACTCGCGCAGTCATCGCACTGGCGACTGAACAGGGTTTACAAACGCG CTTTCGCCATACGCTCACGTCGCTCGTTGCGCAGGAGTCGCGCTGGCAACTGCGCTTTAC GTCAGGTGAAACCGCCAGCCATGAGACTGTCGTCCTGGCGAACGGCCATCAGATTAACCG TTTTGATCAGACCCGGCCGCTGCCGGTTTATGCCGTCGGGGGGCAGGTCAGTCATATTCC CACCACCCCCGCCCTCTCGGCGTTGCGTCAGGTGTTATGCTACGACGGCTATCTGACGCC GCAAAATCCGCATAATCAGCAGCACTGTATTGGCGCCAGCTATCACCGGGGCGACGAAAG CACCGTCTGGCGCGAAGAAGATCAGCGTCAGAACCGACAGCGTCTGCTTGACTGTTTTCC GGATGCGAACTGGGCCACAGAGGTTGACGTTAGCGGCAACAGCGCCCGTTGCGGCGTGCG TTGCGCCACCCGCGACCATCTGCCGATGGTGGGCAATGTCCCGGATTACCACGCCACGCT GACGCATTACGCCGATTTAGCCGATAATAAAACGTCGGCGGCGTCTGCGCCTGTGTATCC GGGTTTATTTATGCTCGGCGCGCTGGGATCGCGTGGTTTGTGTTCAGCGCCATTATGCGC AGAAATTCTGGCGGCGCAGATGAGTAACGAGCCGATTCCACTGGATGCCGGTACGCTGGC GGCGTTAAATCCAAATCGGTTATGGGTGAGAAAGTTATTGAAGGGAAAAGCGGTGAAGTA A
Region Details
| Region | 1 |
| Region Length | 8.4Kb |
| Completeness(score) | incomplete(30) |
| Specific Keyword | plate,protease |
| Region Position | 107304-115704 |
| # tRNA | 0 |
| # Total Proteins | 9 |
| # Phage Hit Proteins | 7 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 77.7% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 4 |
| Most Common Phage Name(hit genes count) | PHAGE_Escher_500465_2_NC_049343(5) PHAGE_Escher_D108_NC_013594(2) PHAGE_Pseudo_FHA0480_NC_041851(1) PHAGE_Acinet_Acj9_NC_014663(1) PHAGE_Acinet_AbTZA1_NC_049445(1) PHAGE_Campyl_CP220_NC_027997(1) PHAGE_Acinet_vB_AbaM_PhT2_NC_049494(1) PHAGE_Entero_Mu_NC_000929(1) PHAGE_Acinet_Acj61_NC_014661(1) PHAGE_Entero_SfMu_NC_027382(1) PHAGE_Haemop_SuMu_NC_019455(1) PHAGE_Pseudo_JBD93_NC_030918(1) PHAGE_Ralsto_RS138_NC_029107(1) |
| First Most Common Phage # | 4 |
| First Most Common Phage % | 55.55% |
| GC % | 53.27% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Region DNA
>2 128465-134540 ATGGATAGCCTTAACGACGATAAAATTAACCGGCACAGCAGTGACCTGGAAGTTGAAAGC GAAGAAAAACAAAGCGGTAAAGAGATTGAAGTAGATGAAGATCGTCTTCCTTCCCGCGCC ATGGCGATTCATGAACATATTCGCCAGGATGGTGAAAAAGAGATGGAACGCGATGCGATG GCTTTGCTCTGGTCAGCCATTGCCGCAGGACTTTCTATGGGGGCATCACTCCTGGCGAAA GGGATTTTCCACGTGCAGCTTGAAGGCGTTCCCGGCGGCTTTTTACTGGAAAATCTCGGT TATACCTTTGGTTTTATCATTGTCATCATGGCCCGCCAGCAATTATTTACTGAAAATACC GTTACCGCCGTATTGCCGGTAATGCAAAATCCCACGCTGAGTAACGTTGGCCTGCTGATG CGCTTATGGGGCGTAGTCTTATTGGGCAACCTTATTGGCACCGGGGTTGCGGCGTGGGCT TTTGAATATATGCCTATATTTGATGAAGAGACCCGCGATGCCTTTGTCAAAATTGGTATG GAGGTCATGAAAAATAGCCCAACGGAGATGTTTGCCAACGCGATTATCTCTGGCTGGATC ATCGCCACAATGGTATGGATGTTTCCTGCTGCAGGCGGGGCAAAAATTGTGGTCATTATT TTGATGACCTGGCTTATCGCGCTGGGCGATACCACCCATATTGTCGTCGGTTCCGTTGAA ATTTTGTATTTGGTTTTCAACGGCACGCTGCCCTGGAGCGACTTTTTCTGGCCCTTCGCC CTTCCCACACTTGCCGGAAATATCTGCGGCGGCACCTTTATTTTCGCATTGATGAGCCAC GCGCAGATCCGCAACGATATGAGCAATAAGCGTAAGGAAGAAGCGAGGCTACGCGGCGAG CGCCTGGAACGGGAGCGGAAAAAAGCGGAAAAACAGCGCTGAGTGGCGACGGTTTAACCA GTCAGGCGGCGCTACACTTACTCCGGCGAATAAAAAACGCTATACTGGCGCCGCGTTGTC CCCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAGTTGCAGGTTCGATTCCTG CAGGGGACACCATGACCTCTTTTACCCACCTCTCACGAATCTCAGCAAACCCACACCACA CAAGGCGTTGCAGCGTTTTTGATGTCTTATGATCTCCAGCGAATAGTGCCTATAAACATA ACGAAAAGCATCCCTTTAAAGTCCCCTCTCGCTGTTAGAACTTAACCAAAAGTTAGCACC TTCACTTTCCGACAGATATAGGCCCAGAACTTCTTTTTTGCCTTCTAGATTCAGTGCCAG AACGGTATAAACCGCCTTGCTCTGATAACGGCCATCCTCACGGTTTTTATAATGAATAGC GTCCAGCCAGACGACGGGATAAACCTTCTCCAGCGGGCTCTGTTGCCACTGTTTTAGTTC AGGGATGACTTTATCGGTACTGCACTGACGGTGGCGGTTGAAACGCTGAAGGCATAAAGA TCTTCACTCTCCCGGCCGATGTCCTGATAACTCATCTCCAGCGCAAACAGTCGAATGATA TTGCGCTCGATCTCGTCGTACAGGGGGTCTGAAGCTTCTTCACCAATTATGGCTCAAAAG TGCCGTTACGATTGCGCGGAGTTGCCAGTTCAAAACTGCCTGTTGGGGCTTTAATGGCTT TTTGCCGGAACCATTTTTACGGTTTGCCTCAACATCCTGAGCCAGATGGGAATCAAGTTC AGCAGACAGGGTAGAGTCGGTTAAATACTTGATTAATGGCGTTAAGATGCCATCTTTGCC CGTTAATGCCTGGCCGGACCTGAAGGGCTTTAAGTGCTTTGTCGAAATCGAAGGGATGGG ACATGTGCCATTCTTTTTTATTTTATGTTACTAAAATTATACAGAATTTTTAACGCTCCC CCTCTCCCCAGCACTTCCACCCTTTCAAGTACCTCTCTCTGAAAAAACATGCAAAGCCTT GTAAGACGATGTAAAGCTTTACATGTCCCGTTTTTATTCCAAGACGCTTGGCAATCAGCA ATACCAATTGATCGATAACATAGATCAATATATTAAAACTCAATAGCTTAAAACTATTAA AAATACAATTATTGATCGCTTATATCGATCAAACCAATTTGTAGTGCTACACTCCAGACC TTTCTGAATCGGCTAATTTTCATAATGTTGAAGTTATTCGCTAAGTACACATCGATCGGT GTTCTTAACACGCTCATTCATTGGGGAGTATTTGCTTTCTGTATGTATGGGATGCATACG CATCAGGCGCTGACGAACTTTTCCGATTTTGTTATCGCTGTATCGTTCAGCTTCTATGCT AATGCGCGCTTCACCTTTAATGCCAGCACTACTGCAATTCTCTACATGATGTATATGGGA TTCATGGGAACACTGAGCGCTGTTGTTGGATGGATGGCTGACCAATGTTCTTTGCCACCA TTGGTTACCCTCATCACTTTCTCGGCAATTAGCCTGGTATGCGGCTTTATCTATTCCAGA TTCATTATCTTCAGGGATAAAAATGAAAATCTCTCTTGTCGTCCTGGTTTTTAACGAAGA AGACACGATACCGATTTTCTATAGAACGGTACATGAGTTTAATGAACTTGAAAAATATAA AGTTGAGATTATTTTTATTAATGACGGAAGTAAAGATGTGACGGAGTCAATAATTAAAAT AATAGCCGTATCTGATCCACTCGTCATTCCGTTTTCGTTTACACGAAACTTCGGGAATGA TGCAAGATGCACAACCATTTTATTAATCTTTTTTTAAATTGAGGTAATTTAAGTTGGAAC ACTTAAAATACAGACCTGATATAGATGGATTACGCGCAATAGCGGTTTTATCTGTGGTAA TATTCCATTATTTCCCATCATTATTGCCGGGTGGGTTTGTTGGAGTAGATATATTCTTTG TGATATCTGGATACCTTATAACATCAATAATATTAAAATCTGCATCAAACAAATCATTTT CATACCTTGATTTCTATAAAAGGAGAGTGCTTAGAATATTTCCAGCATTATCCATAGTTC TTGTATCATGTCTTATTGTTGGTTGGATTTATTTATTCCAGGATGATTACAAATTACTTG GTAAGCATGTTTTTAGTGGCTCATTCTTTATATCAAACTTTACTCTTTGGAGTGAGTCTG GCTATTTTGATTCAAAATCATACCTTAAACCTTTACTACATTTGTGGTCGCTGGGAATTG AAGAGCAATTTTATATAATATGGCCAGTAGTTATATTGCTATGCTTTAGAAGCAAAAACC ATAACAGAAACATAGTATTATCATGCGCAACTATATTTATAATTAGCTATGCGATTAGCA TTTTTACAATGGCATCTGATGGCGGAGCTAATTACTACTCTCCCGCATCAAGATTTTGGG AGTTAATGGCTGGAGCGATTATATCCACATTGAGATTTATAGGAATAAACACTTCGTTAT CAAAATTAATGTCCCTGTTAGGAATTATACTAATCGCATTATCAATAACCATGATAGATG AAAAGATGTCATTTCCTGGATATATAGCAATAATCCCAATACTTGGCGCCTCTCTTATAA TAGCATCTAATGGTAATGATTTAGTTGTGTCGAAATTGCTTAGTGTTAGGCCTGTTGTTT TCTTTGGTCTTATTAGCTATCCTCTTTATTTGTGGCATTGGCCTATTTATTCATTCTATC GTTCAATATTTGCTGGCTCACCAGACTACCATGAATTAACTCTTCTTTTATTATTATCGT TCTTTTTGGCGATATTAACTTATTATTTAATTGAAAAACCACTGAGAAATTCCAGAAGTA AATATATCACAGCAATATTATTAGCATTATCTGTATTTGGGACGGGTTTAATTGGCGCAT TTATTTTTCATATAAATGGAGTTAAAGACAGGGAAATCAATAAATCAGCAAGTGAATATG CTTCTGTTACTGACGTGTACAATTATTATAAATATGGAGAACTACTCCGTGGAGGGATAT GTCACTCAGTACAACTTACTGCTGCCATATCCAATGGATGTATAAAAAATGGCAAGCATA ATATATTTATCATTGGTGATTCTTATGCGGCGGCTCTTTTCAATAGGCTTTCTCATTATA TAGATAATAAAGGTTCTGATTATATAATAAGCCAAATGACAGATGGTAATGCTCCTCCTC TATTTGTTGACGGTAAAGATGATTTACAGAGAAGTGTCATCACTCTAAACAATAATAGAA TTAATGAAATTAAACGTGTTCAGCCTGAGGTGGTTCTGCTGACATGGTCAGTTCGAGGAA CAAATGGAGTACATGATAAAAAGTTAGCAATTGATGCGTTATCATTAACCATTAAAAAAA TTAAAGAGGCATCCCCTGACTCAAGGATTGTTTTCATTGGACCAGTCCCGGAATGGAATG CAAATTTAGTTAAAATAATATCTAACTACCTGAGTGAGTTTAAAAAAACTCCACCATTGT ATATGACATATGGATTAAATAGTGAAATAAGCGAGTGGGACTCTTACTTTAGTAACAATG TTCCAAAAATGGGAATTGAATATATATCAGCATACAAAGCATTATGTAACGAAAGTGGAT GTCTTACAAGAGTTGGTAATGGTCCTGATTTTATCACTGCCGTTGATTGGGGACATTTAA CAAAGCCTGGTTCTGATTTCCTTTTTAATAAAATTGGAAATAAAATAATCAAATAGATAG GCTGTTACTATTACATATAAATCCAATATGGAACATGCCAGTCATACTGTGTAACTGCCA CTATATTAACGGTGATCGCTCAGGCGGTCACCGAACTCGATAATAAAGCGAATCATTGCC AGCGACCAGTCCTGGATCGGCATACTCCATTTTTTGACGCCCCTTTGACCAACTCTTTTA CTGCGGCGGTGATCTTAAGTATCAGCATGGGCGACACATCAGCGTCGTACATCTCTTTGA AGGTGGCGATGATTTCGCGGGTAGTCATGTCATGCCTTTGGCATAAAGGGATAAATCTGA CTTTCCATCTCGTAATACGCGTCTGATGCTCCTTAATCAGCTACAGTTCAAAGGTATTTT CACGGCCACGCAGCATGTTCAGCACTATCTCGCCGCCATCATACAGCACCGTTTTTAATG AGTAGCCATTGTGGGAGTTTGAGCTCGTTTTAGGAGCATTTTTCTCATGCCCGAGATGGT CAGCCAGCTCAGCATTGAGCGCCGTTTCGACGGTTAATTTCGTCAGCATATGGAAAAACT GACTGAGGTCGGCTTCAGTTTTAAGACCTTTAGCCAGTTCAGCCGCAAGAGCTGTGAGTT TCTTTTCGTCCATAATTGCCTTTCTCCTTTGCTGGAGTGAATATATAATAATCAGATAAT TACATAATTTTTAATTACAATCTCCCAATACTTATATTATACCCCCATATTCATTACACG TTCAAAGTGTTGTTAACGTTAATCTAACTAATTATCCATTAGGTATTTCCCCTAAAGACC TTAACGAAGCCGAATTATTTTTGCATGTGACACAAAACATGAGTAATCTTTTATAAATTT ATCTGACACGATATTAGGACTAATGACATCTCAGCTACCATACAATCTTTATAGTTAACT GTTGAGGATGCGGGGTCTGACAGATTACCAGATGGTGTTTGTTTTATGTCAATGAGTCTC AAACCATTAATAATGCAACCACTTTCTACAAACAATTAGTTAGTGTTAAAGTTTTAGTAT CGATTACAGAAATATATGTGAATGTCTTCCCATATGTGTACCATAGACCACCAGACCCTG CGCAATCTTGCATAAGAATGTTCGATACATAACTTCCCCAGCCATCCATACCAAGACCAA CACTCTATGAACCAATGGCAACGAGACCATCGACTAAATGATTTGTTGGTAGTTGGTGTA CCGGATATTCTGATAGCGAATAGTCGCCTGGTCTATCTTTTTCATTTCCGATATCTGCCC AAAGGTTGAAGCAGTCCCACAAAGAGTATATGGAAAGTAACTTTCTGAATTGAAGTTTAT AACATCTGGATGAGGT
Region Details
| Region | 2 |
| Region Length | 6Kb |
| Completeness(score) | incomplete(30) |
| Specific Keyword | transposase |
| Region Position | 128465-134540 |
| # tRNA | 1 |
| # Total Proteins | 8 |
| # Phage Hit Proteins | 8 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Salmon_103203_sal5_NC_031946(3) PHAGE_Salmon_118970_sal4_NC_030919(3) PHAGE_Salmon_BTP1_NC_042346(2) PHAGE_Salmon_SPN1S_NC_016761(1) PHAGE_Salmon_vB_SalM_SJ3_NC_024122(1) PHAGE_Pseudo_PAJU2_NC_011373(1) PHAGE_Entero_UAB_Phi20_NC_031019(1) PHAGE_Haemop_SuMu_NC_019455(1) PHAGE_Entero_P22_NC_002371(1) PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575(1) PHAGE_Entero_VT2phi_272_NC_028656(1) PHAGE_Escher_EP75_NC_049433(1) PHAGE_Salmon_vB_SalM_PM10_NC_031128(1) PHAGE_Salmon_g341c_NC_013059(1) |
| First Most Common Phage # | 3 |
| First Most Common Phage % | 37.5% |
| GC % | 40.34% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NZ_WSUP01000005.1| Salmonella enterica subsp. enterica serovar Typhi strain PHL3828 144573, gc%: 52.55%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 9 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 107304..108305 | PHAGE_Escher_500465_2_NC_049343: hypothetical protein; GQS48_RS00920; phage(gi100039) | 9.21e-129 | Showinfo_outline |
| 2 | complement(108302..109480) | PHAGE_Escher_500465_2_NC_049343: hypothetical protein; GQS48_RS00925; phage(gi100040) | 0.0 | Showinfo_outline |
| 3 | complement(109660..110034) | PHAGE_Pseudo_FHA0480_NC_041851: hypothetical protein; GQS48_RS00930; phage(gi100005) | 1.58e-05 | Showinfo_outline |
| 4 | 110206..110454 | PHAGE_Ralsto_RS138_NC_029107: transcriptional regulator; GQS48_RS00935; phage(gi985760910) | 1.35e-23 | Showinfo_outline |
| 5 | 110623..110991 | PHAGE_Acinet_Acj61_NC_014661: gp27 baseplate hub subunit; GQS48_RS00940; phage(gi311992945) | 2.79e-08 | Showinfo_outline |
| 6 | 110991..111509 | YbjP/YqhG family protein; GQS48_RS00945 | 0.0 | Showinfo_outline |
| 7 | complement(111576..112232) | CPBP family intramembrane metalloprotease; GQS48_RS00950 | 0.0 | Showinfo_outline |
| 8 | complement(112330..113544) | PHAGE_Escher_500465_2_NC_049343: DNA adenine methyltransferase; GQS48_RS00955; phage(gi100041) | 0.0 | Showinfo_outline |
| 9 | 113644..115704 | PHAGE_Escher_500465_2_NC_049343: hypothetical protein; GQS48_RS00960; phage(gi100042) | 0.0 | Showinfo_outline |
Sequence
>107304..108305
SalmonellaentericasubspentericaserovarTyphiMHPISGAPAQPPGEGRNPLSAASEQPLSMQQRTVLERLITRLISLTQQQSAEVWAGMKHDLGIKNDAPLLSRHFPAAEQNLTQRLGVAQQNHANRQVLSQLTELLGVGNNRQAVSDFIRQQYGQTALSQLTPDQLKNVLTLLQQGQLSIPQPQQRPATDRPLLPAEHNTLNQLVTKLAAATGESNKLIWQSMLELSGVKSGELIPAKQFTHLATWLQARQTLSLQHAPTLHTLQAALKQPLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNHIFLRRVEREADELEPLSIQPIYRPFAPMIETVKNLSARPGLLFIALIIVLALFWLVS
Sequence
>complement(108302..109480)
SalmonellaentericasubspentericaserovarTyphiMTAVSQKTTTPSADFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHELGYSNTMVGIAVGIQFFATVLTRGYAGRLADQYGAKRSALQGMLACGLAGAAWLLAALLPVSAPVKFALLIVGRLILGFGESQLLTGTLTWGLGLVGPTRSGKVMSWNGMAIYGALAAGAPLGLLIHSHFGFAALAGTTMVLPLLAWAFNGTVRKVPAYTGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTFISLYFVSNGWTMAGFTLTAFGGAFVLMRILFGWMPDRFGGVKVAVVSLLVETAGLLLLWLAPTAWIALVGAALTGAGCSLIFSALGVEVVKRVPAQVRGTALGGYAAFQDISYGVTGPLAGMLATSYGYPSVFLAGAISAVVGILVTILSFRRG
Sequence
>complement(109660..110034)
SalmonellaentericasubspentericaserovarTyphiMAKEWFTVKECLGLPGFPGSEPAVRERLYKYSEGKAGVRRKRVKSKAEEFHISVFPLYVHRYLDDSGEEPTPEPISLQEAEPEDIWEMMFRLLTPEQRKQVTGRFKVRGMKAVFLFLFDDTPPR
Sequence
>110206..110454
SalmonellaentericasubspentericaserovarTyphiMEPKSQDWHRADIKSALEKRGITLRDLSRQAGLSPDSLRNVFTRSWPRAERIIADALGITPQEIWPSRYGDMQIKNDADIAE
Sequence
>110623..110991
SalmonellaentericasubspentericaserovarTyphiMSWDKRVAVNYAKTHAGSHSQGRCAEFTRKAIQAGGITLGHTYHAKDYGPMLRSAGFTAIGTYEMPREGDVIIIQPYAGGNPSGHMAIYDGAEWYSDFKQRDMWAGPGYRAARPSYTIYRKN
Sequence
>110991..111509
SalmonellaentericasubspentericaserovarTyphiMKTFSLVALILLLCSCSAPHHDSTQAVKQFYTSWMTTFMNDVNTPDDTTALMQRYVAKEVIHRLALIQSLYEQEIVGADYFMYAQDYAPEWIPQLRVGKAHPFLGGEKVDVLLATESTPIHLEVYTRWEEGRWKIYRVRDADKDYEQPIYDAGAITQAEAWSAKVAPEYEKH
Sequence
>complement(111576..112232)
SalmonellaentericasubspentericaserovarTyphiMPTNTLDKIRHSLSCVAVLFGLFGIFVFASFSPSYAWLYLGGLAAPFIYSIVFVYAIAAWSIYSKYYPFLSLGRLSFVECFVPALALVCLTVLYNVFSGPEPWMAELSRQFFLHKFLNTLVMCFLAPVAEEIIFRGFLLNSSIGWGRYSRVSGIIITSLAFAFMHTQYLFAVTFVYLFVFSSILCVVRMRSRGLMIPITLHILNNAWVIFGLLFSATE
Sequence
>complement(112330..113544)
SalmonellaentericasubspentericaserovarTyphiMKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDAGMRSQVWGNVKLDTTGLIDRKVVRFMSDASIYAYLSMEQAVADAGLAPEVYQNNPRVGLIAGSGGGSPKFQVFGADAMRSPRGLKAVGPYVVTKAMASGVSACLATPFKIYGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMQMAMHGVDTPIDYLNSHGTSTPVGDVKELGAIREVFGDNSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTERELTTVMSNSFGFGGTNATLVMRKL
Sequence
>113644..115704
SalmonellaentericasubspentericaserovarTyphiMRHQAHIVKIAIPPVRRVTYVKQYAIQPATLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLGGNRLAERFPVHSHPLFIVAESGFGTGLNFLTLWQAFDSFRSAHPQATLQRLHFISFEKFPLTRDDLALAHQHWPELAPWAEQLQAQWPLPLPGCHRLLLDRGRVTLDLWFGDINELTDQLDATLNQTVDAWFLDGFAPAKNPDMWTPNLFNAMARLARPGATLATFTSAGFVRRGLQEAGFTMQKHKGFGRKREMLCGVMEQHLMPTLSAPWFYCSGSEKRETAIIGGGIASALLSLALLRRGWQVTLYCADDQPAQGASGNRQGALYPLLSKHDAAINRFFPTAFTFARRLYDALPVSFDHAWCGVTQLGWDEKSQQKIAQMLSLALPAGLASALNAEEAEQAVGVTTRCGGITYPAGGWLCPEQLTRAVIALATEQGLQTRFRHTLTSLVAQESRWQLRFTSGETASHETVVLANGHQINRFDQTRPLPVYAVGGQVSHIPTTPALSALRQVLCYDGYLTPQNPHNQQHCIGASYHRGDESTVWREEDQRQNRQRLLDCFPDANWATEVDVSGNSARCGVRCATRDHLPMVGNVPDYHATLTHYADLADNKTSAASAPVYPGLFMLGALGSRGLCSAPLCAEILAAQMSNEPIPLDAGTLAALNPNRLWVRKLLKGKAVK
Region 2, total 9 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 128465..129406 | PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; GQS48_RS01030; phage(gi966197797) | 0.0 | Showinfo_outline |
| 2 | 129482..129556 | tRNA | 0.0 | Showinfo_outline |
| 3 | complement(129704..130328) | PROPHAGE_Shewan_MR-1: ISSod4, transposase; GQS48_RS01040; phage(gi24373869) | 4.22e-07 | Showinfo_outline |
| 4 | 130649..131038 | PHAGE_Entero_UAB_Phi20_NC_031019: recombination protein; GQS48_RS01045; phage(gi100049) | 3.31e-75 | Showinfo_outline |
| 5 | 131007..131261 | PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; GQS48_RS01050; phage(gi100002) | 2.23e-33 | Showinfo_outline |
| 6 | 131278..133200 | PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; GQS48_RS01055; phage(gi100015) | 0.0 | Showinfo_outline |
| 7 | complement(133371..133817) | PROPHAGE_Escher_CFT073: transposase; GQS48_RS01060; phage(gi26246249) | 2.76e-47 | Showinfo_outline |
| 8 | complement(134190..134333) | PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; GQS48_RS01065; phage(gi100014) | 3.51e-17 | Showinfo_outline |
| 9 | complement(134349..134540) | PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; GQS48_RS01070; phage(gi100014) | 2.42e-28 | Showinfo_outline |
Sequence
>128465..129406
SalmonellaentericasubspentericaserovarTyphiMDSLNDDKINRHSSDLEVESEEKQSGKEIEVDEDRLPSRAMAIHEHIRQDGEKEMERDAMALLWSAIAAGLSMGASLLAKGIFHVQLEGVPGGFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMQNPTLSNVGLLMRLWGVVLLGNLIGTGVAAWAFEYMPIFDEETRDAFVKIGMEVMKNSPTEMFANAIISGWIIATMVWMFPAAGGAKIVVIILMTWLIALGDTTHIVVGSVEILYLVFNGTLPWSDFFWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKEEARLRGERLERERKKAEKQR
Sequence
>129482..129556
GTCCCCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAGTTGCAGGTTCGATTCCTGCAGGGGACACCA
Sequence
>complement(129704..130328)
SalmonellaentericasubspentericaserovarTyphiMSHPFDFDKALKALQVRPGINGQRWHLNAINQVFNRLYPVCTFPSGSGCGKPKWFRQKAIKAPTGSFELATPRNRNGTFEPLVKKLQTPCTTRSSAISFDCLRWRVIRTSAGRVKIFMPSAFQPPPSVQYRSHPTKTVATEPAGEGLSRRLAGRYSLKPGWPLSEQGGLYRSGTESRRQKRSSGPISVGKRCLLVKT
Sequence
>130649..131038
SalmonellaentericasubspentericaserovarTyphiMLKLFAKYTSIGVLNTLIHWGVFAFCMYGMHTHQALTNFSDFVIAVSFSFYANARFTFNASTTAILYMMYMGFMGTLSAVVGWMADQCSLPPLVTLITFSAISLVCGFIYSRFIIFRDKNENLSCRPGF
Sequence
>131007..131261
SalmonellaentericasubspentericaserovarTyphiMKISLVVLVFNEEDTIPIFYRTVHEFNELEKYKVEIIFINDGSKDVTESIIKIIAVSDPLVIPFSFTRNFGNDARCTTILLIFF
Sequence
>131278..133200
SalmonellaentericasubspentericaserovarTyphiMEHLKYRPDIDGLRAIAVLSVVIFHYFPSLLPGGFVGVDIFFVISGYLITSIILKSASNKSFSYLDFYKRRVLRIFPALSIVLVSCLIVGWIYLFQDDYKLLGKHVFSGSFFISNFTLWSESGYFDSKSYLKPLLHLWSLGIEEQFYIIWPVVILLCFRSKNHNRNIVLSCATIFIISYAISIFTMASDGGANYYSPASRFWELMAGAIISTLRFIGINTSLSKLMSLLGIILIALSITMIDEKMSFPGYIAIIPILGASLIIASNGNDLVVSKLLSVRPVVFFGLISYPLYLWHWPIYSFYRSIFAGSPDYHELTLLLLLSFFLAILTYYLIEKPLRNSRSKYITAILLALSVFGTGLIGAFIFHINGVKDREINKSASEYASVTDVYNYYKYGELLRGGICHSVQLTAAISNGCIKNGKHNIFIIGDSYAAALFNRLSHYIDNKGSDYIISQMTDGNAPPLFVDGKDDLQRSVITLNNNRINEIKRVQPEVVLLTWSVRGTNGVHDKKLAIDALSLTIKKIKEASPDSRIVFIGPVPEWNANLVKIISNYLSEFKKTPPLYMTYGLNSEISEWDSYFSNNVPKMGIEYISAYKALCNESGCLTRVGNGPDFITAVDWGHLTKPGSDFLFNKIGNKIIK
Sequence
>complement(133371..133817)
SalmonellaentericasubspentericaserovarTyphiMDEKKLTALAAELAKGLKTEADLSQFFHMLTKLTVETALNAELADHLGHEKNAPKTSSNSHNGYSLKTVLYDGGEIVLNMLRGRENTFELLIKEHQTRITRWKVRFIPLCQRHDMTTREIIATFKEMYDADVSPMLILKITAAVKELV
Sequence
>complement(134190..134333)
SalmonellaentericasubspentericaserovarTyphiMDGWGSYVSNILMQDCAGSGGLWYTYGKTFTYISVIDTKTLTLTNCL
Sequence
>complement(134349..134540)
SalmonellaentericasubspentericaserovarTyphiTSSRCYKLQFRKLLSIYSLWDCFNLWADIGNEKDRPGDYSLSEYPVHQLPTNHLVDGLVAIGS
Salmonella enterica subsp
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 144573 bps
Phages: 2
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: GQS48_RS00920 (Region 1)
Locus: GQS48_RS00920ORF Start: 107304
ORF Stop: 108305
Strand: Forward
Protein Sequence: MHPISGAPAQPPGEGRNPLSAASEQPLSMQQRTVLERLITRLISLTQQQSAEVWAGMKHDLGIKNDAPLLSRHFPAAEQNLTQRLGVAQQNHANRQVLSQLTELLGVGNNRQAVSDFIRQQYGQTALSQLTPDQLKNVLTLLQQGQLSIPQPQQRPATDRPLLPAEHNTLNQLVTKLAAATGESNKLIWQSMLELSGVKSGELIPAKQFTHLATWLQARQTLSLQHAPTLHTLQAALKQPLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNHIFLRRVEREADELEPLSIQPIYRPFAPMIETVKNLSARPGLLFIALIIVLALFWLVS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GQS48_RS00920, hypothetical protein, phage(gi100039), PHAGE_Escher_500465_2_NC_049343
Homolog/Ortholog E-Value: 9.21e-129
Locus 2: GQS48_RS00925 (Region 1)
Locus: GQS48_RS00925ORF Start: 108302
ORF Stop: 109480
Strand: Backward
Protein Sequence: MTAVSQKTTTPSADFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHELGYSNTMVGIAVGIQFFATVLTRGYAGRLADQYGAKRSALQGMLACGLAGAAWLLAALLPVSAPVKFALLIVGRLILGFGESQLLTGTLTWGLGLVGPTRSGKVMSWNGMAIYGALAAGAPLGLLIHSHFGFAALAGTTMVLPLLAWAFNGTVRKVPAYTGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTFISLYFVSNGWTMAGFTLTAFGGAFVLMRILFGWMPDRFGGVKVAVVSLLVETAGLLLLWLAPTAWIALVGAALTGAGCSLIFSALGVEVVKRVPAQVRGTALGGYAAFQDISYGVTGPLAGMLATSYGYPSVFLAGAISAVVGILVTILSFRRG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GQS48_RS00925, hypothetical protein, phage(gi100040), PHAGE_Escher_500465_2_NC_049343
Homolog/Ortholog E-Value: 0.0
Locus 3: GQS48_RS00930 (Region 1)
Locus: GQS48_RS00930ORF Start: 109660
ORF Stop: 110034
Strand: Backward
Protein Sequence: MAKEWFTVKECLGLPGFPGSEPAVRERLYKYSEGKAGVRRKRVKSKAEEFHISVFPLYVHRYLDDSGEEPTPEPISLQEAEPEDIWEMMFRLLTPEQRKQVTGRFKVRGMKAVFLFLFDDTPPR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GQS48_RS00930, hypothetical protein, phage(gi100005), PHAGE_Pseudo_FHA0480_NC_041851
Homolog/Ortholog E-Value: 1.58e-05
Locus 4: GQS48_RS00935 (Region 1)
Locus: GQS48_RS00935ORF Start: 110206
ORF Stop: 110454
Strand: Forward
Protein Sequence: MEPKSQDWHRADIKSALEKRGITLRDLSRQAGLSPDSLRNVFTRSWPRAERIIADALGITPQEIWPSRYGDMQIKNDADIAE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GQS48_RS00935, transcriptional regulator, phage(gi985760910), PHAGE_Ralsto_RS138_NC_029107
Homolog/Ortholog E-Value: 1.35e-23
Locus 5: GQS48_RS00940 (Region 1)
Locus: GQS48_RS00940ORF Start: 110623
ORF Stop: 110991
Strand: Forward
Protein Sequence: MSWDKRVAVNYAKTHAGSHSQGRCAEFTRKAIQAGGITLGHTYHAKDYGPMLRSAGFTAIGTYEMPREGDVIIIQPYAGGNPSGHMAIYDGAEWYSDFKQRDMWAGPGYRAARPSYTIYRKN
Homolog/Ortholog Species: Plate protein
Homolog/Ortholog Protein: GQS48_RS00940, gp27 baseplate hub subunit, phage(gi311992945), PHAGE_Acinet_Acj61_NC_014661
Homolog/Ortholog E-Value: 2.79e-08
Locus 6: GQS48_RS00945 (Region 1)
Locus: GQS48_RS00945ORF Start: 110991
ORF Stop: 111509
Strand: Forward
Protein Sequence: MKTFSLVALILLLCSCSAPHHDSTQAVKQFYTSWMTTFMNDVNTPDDTTALMQRYVAKEVIHRLALIQSLYEQEIVGADYFMYAQDYAPEWIPQLRVGKAHPFLGGEKVDVLLATESTPIHLEVYTRWEEGRWKIYRVRDADKDYEQPIYDAGAITQAEAWSAKVAPEYEKH
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GQS48_RS00945, YbjP/YqhG family protein
Homolog/Ortholog E-Value: N/A
Locus 7: GQS48_RS00950 (Region 1)
Locus: GQS48_RS00950ORF Start: 111576
ORF Stop: 112232
Strand: Backward
Protein Sequence: MPTNTLDKIRHSLSCVAVLFGLFGIFVFASFSPSYAWLYLGGLAAPFIYSIVFVYAIAAWSIYSKYYPFLSLGRLSFVECFVPALALVCLTVLYNVFSGPEPWMAELSRQFFLHKFLNTLVMCFLAPVAEEIIFRGFLLNSSIGWGRYSRVSGIIITSLAFAFMHTQYLFAVTFVYLFVFSSILCVVRMRSRGLMIPITLHILNNAWVIFGLLFSATE
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GQS48_RS00950, CPBP family intramembrane metalloprotease
Homolog/Ortholog E-Value: N/A
Locus 8: GQS48_RS00955 (Region 1)
Locus: GQS48_RS00955ORF Start: 112330
ORF Stop: 113544
Strand: Backward
Protein Sequence: MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDAGMRSQVWGNVKLDTTGLIDRKVVRFMSDASIYAYLSMEQAVADAGLAPEVYQNNPRVGLIAGSGGGSPKFQVFGADAMRSPRGLKAVGPYVVTKAMASGVSACLATPFKIYGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMQMAMHGVDTPIDYLNSHGTSTPVGDVKELGAIREVFGDNSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTERELTTVMSNSFGFGGTNATLVMRKL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GQS48_RS00955, DNA adenine methyltransferase, phage(gi100041), PHAGE_Escher_500465_2_NC_049343
Homolog/Ortholog E-Value: 0.0
Locus 9: GQS48_RS00960 (Region 1)
Locus: GQS48_RS00960ORF Start: 113644
ORF Stop: 115704
Strand: Forward
Protein Sequence: MRHQAHIVKIAIPPVRRVTYVKQYAIQPATLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLGGNRLAERFPVHSHPLFIVAESGFGTGLNFLTLWQAFDSFRSAHPQATLQRLHFISFEKFPLTRDDLALAHQHWPELAPWAEQLQAQWPLPLPGCHRLLLDRGRVTLDLWFGDINELTDQLDATLNQTVDAWFLDGFAPAKNPDMWTPNLFNAMARLARPGATLATFTSAGFVRRGLQEAGFTMQKHKGFGRKREMLCGVMEQHLMPTLSAPWFYCSGSEKRETAIIGGGIASALLSLALLRRGWQVTLYCADDQPAQGASGNRQGALYPLLSKHDAAINRFFPTAFTFARRLYDALPVSFDHAWCGVTQLGWDEKSQQKIAQMLSLALPAGLASALNAEEAEQAVGVTTRCGGITYPAGGWLCPEQLTRAVIALATEQGLQTRFRHTLTSLVAQESRWQLRFTSGETASHETVVLANGHQINRFDQTRPLPVYAVGGQVSHIPTTPALSALRQVLCYDGYLTPQNPHNQQHCIGASYHRGDESTVWREEDQRQNRQRLLDCFPDANWATEVDVSGNSARCGVRCATRDHLPMVGNVPDYHATLTHYADLADNKTSAASAPVYPGLFMLGALGSRGLCSAPLCAEILAAQMSNEPIPLDAGTLAALNPNRLWVRKLLKGKAVK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GQS48_RS00960, hypothetical protein, phage(gi100042), PHAGE_Escher_500465_2_NC_049343
Homolog/Ortholog E-Value: 0.0
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Click on a sequence to see details.
Locus 1: GQS48_RS01030 (Region 2)
Locus: GQS48_RS01030ORF Start: 128465
ORF Stop: 129406
Strand: Forward
Protein Sequence: MDSLNDDKINRHSSDLEVESEEKQSGKEIEVDEDRLPSRAMAIHEHIRQDGEKEMERDAMALLWSAIAAGLSMGASLLAKGIFHVQLEGVPGGFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMQNPTLSNVGLLMRLWGVVLLGNLIGTGVAAWAFEYMPIFDEETRDAFVKIGMEVMKNSPTEMFANAIISGWIIATMVWMFPAAGGAKIVVIILMTWLIALGDTTHIVVGSVEILYLVFNGTLPWSDFFWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKEEARLRGERLERERKKAEKQR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GQS48_RS01030, hypothetical protein, phage(gi966197797), PHAGE_Entero_VT2phi_272_NC_028656
Homolog/Ortholog E-Value: 0.0
Locus 2: tRNA (Region 2)
Locus: tRNAORF Start: 129482
ORF Stop: 129556
Strand: Backward
Protein Sequence: VPLVKWIRAPPKGLQVRFLQGTP
Homolog/Ortholog Species: Trna
Homolog/Ortholog Protein: tRNA
Homolog/Ortholog E-Value: N/A
Locus 3: GQS48_RS01040 (Region 2)
Locus: GQS48_RS01040ORF Start: 129704
ORF Stop: 130328
Strand: Backward
Protein Sequence: MSHPFDFDKALKALQVRPGINGQRWHLNAINQVFNRLYPVCTFPSGSGCGKPKWFRQKAIKAPTGSFELATPRNRNGTFEPLVKKLQTPCTTRSSAISFDCLRWRVIRTSAGRVKIFMPSAFQPPPSVQYRSHPTKTVATEPAGEGLSRRLAGRYSLKPGWPLSEQGGLYRSGTESRRQKRSSGPISVGKRCLLVKT
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: GQS48_RS01040, ISSod4, transposase, phage(gi24373869), PROPHAGE_Shewan_MR-1
Homolog/Ortholog E-Value: 4.22e-07
Locus 4: GQS48_RS01045 (Region 2)
Locus: GQS48_RS01045ORF Start: 130649
ORF Stop: 131038
Strand: Forward
Protein Sequence: MLKLFAKYTSIGVLNTLIHWGVFAFCMYGMHTHQALTNFSDFVIAVSFSFYANARFTFNASTTAILYMMYMGFMGTLSAVVGWMADQCSLPPLVTLITFSAISLVCGFIYSRFIIFRDKNENLSCRPGF
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GQS48_RS01045, recombination protein, phage(gi100049), PHAGE_Entero_UAB_Phi20_NC_031019
Homolog/Ortholog E-Value: 3.31e-75
Locus 5: GQS48_RS01050 (Region 2)
Locus: GQS48_RS01050ORF Start: 131007
ORF Stop: 131261
Strand: Forward
Protein Sequence: MKISLVVLVFNEEDTIPIFYRTVHEFNELEKYKVEIIFINDGSKDVTESIIKIIAVSDPLVIPFSFTRNFGNDARCTTILLIFF
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GQS48_RS01050, hypothetical protein, phage(gi100002), PHAGE_Salmon_118970_sal4_NC_030919
Homolog/Ortholog E-Value: 2.23e-33
Locus 6: GQS48_RS01055 (Region 2)
Locus: GQS48_RS01055ORF Start: 131278
ORF Stop: 133200
Strand: Forward
Protein Sequence: MEHLKYRPDIDGLRAIAVLSVVIFHYFPSLLPGGFVGVDIFFVISGYLITSIILKSASNKSFSYLDFYKRRVLRIFPALSIVLVSCLIVGWIYLFQDDYKLLGKHVFSGSFFISNFTLWSESGYFDSKSYLKPLLHLWSLGIEEQFYIIWPVVILLCFRSKNHNRNIVLSCATIFIISYAISIFTMASDGGANYYSPASRFWELMAGAIISTLRFIGINTSLSKLMSLLGIILIALSITMIDEKMSFPGYIAIIPILGASLIIASNGNDLVVSKLLSVRPVVFFGLISYPLYLWHWPIYSFYRSIFAGSPDYHELTLLLLLSFFLAILTYYLIEKPLRNSRSKYITAILLALSVFGTGLIGAFIFHINGVKDREINKSASEYASVTDVYNYYKYGELLRGGICHSVQLTAAISNGCIKNGKHNIFIIGDSYAAALFNRLSHYIDNKGSDYIISQMTDGNAPPLFVDGKDDLQRSVITLNNNRINEIKRVQPEVVLLTWSVRGTNGVHDKKLAIDALSLTIKKIKEASPDSRIVFIGPVPEWNANLVKIISNYLSEFKKTPPLYMTYGLNSEISEWDSYFSNNVPKMGIEYISAYKALCNESGCLTRVGNGPDFITAVDWGHLTKPGSDFLFNKIGNKIIK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GQS48_RS01055, hypothetical protein, phage(gi100015), PHAGE_Salmon_BTP1_NC_042346
Homolog/Ortholog E-Value: 0.0
Locus 7: GQS48_RS01060 (Region 2)
Locus: GQS48_RS01060ORF Start: 133371
ORF Stop: 133817
Strand: Backward
Protein Sequence: MDEKKLTALAAELAKGLKTEADLSQFFHMLTKLTVETALNAELADHLGHEKNAPKTSSNSHNGYSLKTVLYDGGEIVLNMLRGRENTFELLIKEHQTRITRWKVRFIPLCQRHDMTTREIIATFKEMYDADVSPMLILKITAAVKELV
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: GQS48_RS01060, transposase, phage(gi26246249), PROPHAGE_Escher_CFT073
Homolog/Ortholog E-Value: 2.76e-47
Locus 8: GQS48_RS01065 (Region 2)
Locus: GQS48_RS01065ORF Start: 134190
ORF Stop: 134333
Strand: Backward
Protein Sequence: MDGWGSYVSNILMQDCAGSGGLWYTYGKTFTYISVIDTKTLTLTNCL
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GQS48_RS01065, hypothetical protein, phage(gi100014), PHAGE_Salmon_BTP1_NC_042346
Homolog/Ortholog E-Value: 3.51e-17
Locus 9: GQS48_RS01070 (Region 2)
Locus: GQS48_RS01070ORF Start: 134349
ORF Stop: 134540
Strand: Backward
Protein Sequence: TSSRCYKLQFRKLLSIYSLWDCFNLWADIGNEKDRPGDYSLSEYPVHQLPTNHLVDGLVAIGS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GQS48_RS01070, hypothetical protein, phage(gi100014), PHAGE_Salmon_BTP1_NC_042346
Homolog/Ortholog E-Value: 2.42e-28
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download