Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1820391438 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1820391438.PHASTER.zip
gi|00000000|ref|NZ_WSUQ01000047.1| Salmonella enterica subsp. enterica serovar Typhi strain PHL3183 31030, gc%: 45.20%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 9.3Kb | incomplete | 40 | 12 | 3927-13260 info_outline | PHAGE_Entero_cdtI_NC_009514(2) | 41.78% | Show info_outline |
Region DNA
>1 3927-13260 ATGACTAAAGATGAAATCTTTGCAGCTATCCTTAGTAGAGAAGGCGGTTACGTTGATCAC CCTGACGACAGGGGGGGGCCAACGCATTGGGGTATAACCCTGACGACGGCCCGGGCTAAT GGCTATATGGGGGATATGCGGAATCTTACCCGTAATCAAGCATTAAAAATCCTTGAGGCA GATTATTGGTATGGTCCACGACTTGATCAGGTTGCCATTATCTCTCACTCTATTGCAGCT GAGCTTTGTGATACTGGTGTGAACATGGGACCCTCAATCCCGATTAAGTACTTCCAGCGT TGGCTTAATGTTTTTAATGATCAGCAAAAAATTTATCCGGATTTGATAGCAGATGGTCAG ATTGGGCCACGGACGCTTTCGGCACTAACATTTTTTCTCTCTCACCGGAGAGATGAGGGC GAAATGATACTTATCCGGGCATTGAATTGTAGTCAGGGACAACGCTATCTGGAGTTAGCT GAAAAGCGCCAGGCGAATGAATCATTTGTTTATGGATGGATAAAGGAACGGGTAAGATTG TAATTCCCTTACTTACCACTATAGCGGTTTGTGATGATAGCATATAATGATATATTCACA CAGAGAACTGGTGAAAGCCACTAAGTCTCATTATTACTATATTAAGGCGTCAGGTTTTTC TATAGTTCTTTGTGTGTTAAAAACGAGAAATTAATTATGTTGTATGGTATGAGAATGATA GTATTTCCAGCCAAATATTCTTACGGCTAAATACATTATTATCCTTTTCCATTTTGGCAC GCCCAGAACTTTCATCCCATCCAGGAATATGAGATCGGACTCTTTTCTGTTACGTAATGG ATAATGATACAGGTAGTCATGAATGATTGCCGCTTTGGCATATTCACCATCCGGTGGCAA TAATGACCAGAAAATACGCGGAACAGTGGCAAGGTCGGTAACGAATCCTACCGGTACTTC AATGACATCATTTTTATCTTCACTGAGATAAAACCTGAATGGCTCATAAACACGCCATTT ATAATGACCTAACATTTCCATAATTGCTGGACTGGTAAAACAACTCATAATTTTACCTTA TAATAAATATATATTCTGCACCTTACGCTCAAAGTACATGTCGTAAACTCTATTTACTCA TTAACAGCTTCGTGCCAAAAAGGCTACGGGATAATGATCAGAAGCGAGTTGTGGATTACG TAATGCTTCAACCCTTTGTGAATAAGGTGCTCGATCGACAATGACCCCATAATCTAAAAT ACCACCGCCAATTTGCGTGGGTTCTGTAGGTGCGAGTACGGCTACAACTCGTTCCAGATG CTCAGTCATCAGGTCATTTTCAAGTCTGTCTGGGCTGCGATTAAAATCCCCGGCAAGAAA CCAGGATAAATGCCGCATCTGAGGTTGTCTAAAAAAATTAATGGTAACCCTGACAATAGC TGCAGCATCCGGACCTCCACTAGCCAGTGCGTGCGCTGTCAGAAAAACATCATTACCCAG TCCGATGCCAATGACGGGGCGAGATGCGACAGTTGTCGGACGCAAGACATAAACATTATC CGCTCTTTGTCTGGAAACTATTGCCAGATTAACACGGCGTGCTCCAACATCAATAGCCGA GTGGTAGATATATCTTATATCCTGACGGCTGGTGGTTCCGAGATTCCAGGTGTATTCATC AATGGGAATACCCACTCCAAAAGGCTGAATATGTCGTCCGGTAGGAACCGCTGAGGTGGG AACAGCACCGGCCTCCTGTACCATAAGAATATCCACACCGGCAGTACCACTTAAAAGCTG TCTGACATTGACATTCCATTTACTTTCTGTAGATGCTGAAGAGCCCTGAAGATTCCAGGT CATAACTTTGTAGTCACTGATATTAGCGCAGGCAAAAGAAATATAGCTGCAGATGATCAT GGTCAGAAGGAAAAAAACAGGTTTTTTCATAATATCTACTCTCCCGAGCATTACTTCTTT ATCTGAATGATATATGTGTTAATAACCCATTGTTTCATGACGTTGATTTTATTCTGGCAA TGCCTGACTTGTTTCTGGTTCTATGTCTTGTGTAGGTAGTAAGATACATAGTCTAACGTC AATAAAACTAAAATGGATGTCTATTACAGAGGTAAAATGAAGTTTATTCAGTACAATCAA TTAATTATTGTTAATACCAAAGAGACAACTATGAATAAACAACTAACTGAATTTAAAACT CCATTCGCTTAACTCATTGTAACTGTATTGGGTTGATTTATTTGCGGAAAGAGAGATTCG ATATCATTGGTACTTTATAAGTAAACATAAATTTTTCATTACCAGGATTATTATATCCCT GTGAGGGAGGTGACATTTCATCTATTCTCACTCTTGTAGTGACATAGTAAATTTGGCCAC CTGATTAAAGGCGATGTTCTCACCTCAACACAAAACAGGTAACTTAGTGAACAAGAAAAC CAAACAAATCAATGGTTACATCTTGAACGGCTACAATAGCGTCAGACCTCATCATTATAA CGGTGCACTGACGCCGGAAGAGTCTGAGAACAGGTACCGTTTTTACTGTAAAACCGTGAC CAATAGCGTCGATGCGCAACAAAACGTATAATCCGTTGATAGGGCGTACAGGTGTGGCAC TGGGCAAAACGTTCAGTGACAATGACTGGAGCTGGCGGCATTTGGCAAATAGCATGTTGA CCACGCTATAAACGCCAACTTCCGCTACATGTTCTGAGTGGTGGCGTTTGCGTTATATCG TCACAGACAGCGCCTCAGGGCGCTGTTTTCGATCGGACATGTCGCTTTCGCAGGAGGGGA CGTTATTCGGCGACCAGCCACATATCAGCCTCTTCAAACATCTCTTCCAGCATACGGTGC AGCCGTTCTTTCTCGGTTTTTGTACAGTCACTGTTTAATGCGTTCGCCTGCATTGGCTTA ACTTTCACTTGCGCATCGGGAAAAAGTTGATGTACGCGTTTTGTGAGTTCATTGAGGATG ATTTCGCGTGCGCTTGGCAAACCTTCAACATTTCGCTTGTCATAAACGAGTTCGACGAAC ATCGCTATTTCCTTTTTACTGGTTGGATGACCAGTATTTAAGCTGGGTATATAACCGGTG TCAAGGTTTAGCCGCCGTTTTGTCATCCTAACGTTGCGGATGTAAAGTAAATTGATCGCA CATGGAAGTAAAGGTCGCTAACCTGTTGTCATGTCAAGAGGTTAGCGGCTCTCTCTTCAC AGCGGTGTCCTGCTACCTGATGGTAAATTCCAGGGCGCGACTAAAATCGCAATCGGCTAA CACAACAGGGTCGCCTTTTCTGACAATAATGCTATTTGTGCCCAGGCATTTTCGGCTCTG TTTCCCCTTAATTTTGTTATCATCAGTGAGCCAGCGCTGGTTATCATTACCCGTGCATGA ATAAAGAATGATTGGCGTGCCTTCTTTCGTACCCTGTCCTGCAGCATCCAGACATTTCTC ACCCTGCGTGATTCTGTCTCGGTGAAATGAGAAAAGCTGAGATTGCACATGTTTACACTC CCGCAGCGTCAAACGATTCTGTTGATCTGGGCCTGTATCAAGGCACAGACCATCAGTTGT CCGAATTTGTTCCGCGTCATTTATGTAATAACCACCGGAATTAATTTGGTTTTGTGTAAT GACCGGGAACGACAAATTAATACTATAAGGTGCGGGTAAGCCGTTCGTCGTACATCCACA TAAAATAGAGGAGAGGCAGAGAACCAGTGTGTTTTTTCCTGAAAGCAAAGTCATTCAATT ATTACCCTAAAAATAAATAGCATTACAACTATATTGGCAATTTATACCCACTGAATATGA CGTAGCATTGAGCGGCAATAAAGATAATTCCGATAGAATCACATAAATACTTCGGTTAAA TGCGCGCAGCCAGCCACTCCTGCGACGATGGGTATATAGCGTTAAATACTTTTGCAATAT TACATGCTATCACAGTGAAAAACGGCTGTACATTTCTTCACGTTAAACAAAGTGAGAAGG GGGGTTGACACCCGATATATGATAAAAGAGGTCACAGGAGTCATTAGCAAAATAAATCTT TTAGATTTTCGCCACTGAAAACATTCTGCAGCCTTTCAGGCAAAGCCTCATAGCAGACTG CGGAGGTATACGTACTCGCTAAATTTTTCTGAAAAAATGCCGGGTGACGAATTATGAAAG ATAAACGTTGGCGGCGGTAGGTCCGCGGAGTCCATTAATACGACAAAACTCAACGCGTAT ACCGGGGATAAGAGCTTCTGTTTCGTGTTGGCGACATGCTGAAATGTGGACCTGAACATC TTTGCGTCCATCGGAGGGGGTGATGAGACCTTTACCGCTCTTACAATCAAAGGTTTTGAC AATTCCTGTCATTTTACGAGACAAACAAATTCCTTAATGGGGATAACGAGGCGCACTATA CACGTCAGGAAAAATAATGCCAGCTATATTTGATGGCAATCAAGATTTCCGGATGGCTAA AAGTAGTCGTTCGGCACCATTGTAGATAAATAACATTATGTTCTGGAGAAAGTATTCCCT TTCCTGGCGTCGTTGGTTGGTGCGGACATCATGGGTTTTGCCGTCGGGCAGGATGGTGAA CTAATCTGCCTGGCTTGCTTTTTATCGGTATTTGTAGGTGGTTGCGGGGTTTTACTACCA AAATCGTAGATAAAAATTTCCCATGATGCCTGTTGTAAACCAGAACAATGGTCTGAACTG GCCAAAACATGGAATGAAAAAATAAGTAATGACCAAAGCATAAAAGCATGATGTTTCATA GCACCTCCTGTTATATGTAATGACTTGCGAAGTTCATCTAATTAATTATGGGACGTCATT GGCATTTTTTATTCAACGAAGAGTTAACCACTCTTAATAATAATGGGTTTTATAGCAAAA TAGACTTTTTTATCGAGTGTTCAATATTTGCGTCCGTTATTATTTTTCTGGAATGTAAAT TCTCTCTCAACACAGGTGAAATTTATGTTTGAATTGTGGTGTTGATTCTATTCTTATAAC AAGAAATGTTGTAACTGATAGACATATTAAAAGATTGAATCGGAGCGGGAATAAAGCATG CTGAACATCATGGTGAATAGGATTACGGTGCCAGCGATGGCATGTAACGGCATTTCGTCT GGAGCGTCACGTGAGGACTGTGAAGCACAATGCGATATGTTCTGGTTATATGGCGAGTTT GCTTAATGACATTTTTTTAGCCGATCAGCGTCAGGCTTCTTAATGTGGTTGTGATATTTT TCTTTAAATATCAAAAGTTTGTATGACGTGTTTGTTGTTTTATAGTGGCTAAACACTTTA TGGTTTCTGTTAAATATATATGCGTGAGAAAAATTAGCATTCAAATCTATAAAAGTGAGA TGACATTGTAGAACCGGTTACCTTAATGAGCGATAGAGCGCTTCGGTAGTAAAAATATCT TTCAGGAAGTAAACGCATCAGGAGCGATAGCGGTGAATTATTCGTGGTTTGTCGATTCGG CATAGTGGCGATAACTGAATGCCGGATCGGTACTGCAGGTGTTTAAACACACCGTAAATA ATAAGTAGTATTAAGGAGTTGTTATGAAAAATATTATTTTATCCACTTTAGTTATTACTA CAAGCGTTTTGGTTGTAAATGTTGCACAGGCCGATACTAACGCCTTTTCCGTGGGGTATG CACAAAGTAAAGTTCAGGATTTCAAAAATATCCGAGGGGTAAATGTGAAATACCGTTATG AGGATGACTCTCCGGTAAGTTTTATTTCCTCGCTAAGTTACTTATATGGAGACAGCCAGG ATTCCGGGTCTATTGAGTCTGAAGGTATCCATTACCATGACAAGTTTGAGGTGAAATATG GTTCTTTAATGGTTGGGCCAGCCTATCGATTGTCTGACAATTTTTCGTTATACGCGCTGG CAGGTGTCGGCACGGTAAAGGCGACATTTAAAGAACATGCCACTCAGGATGGCGATTCTT TTTCTAACAAAATTTCCTCAAGGAAAACGGGATTTGCCTGGGGCGCGGGTGTACAGATGA ATCCGCTGGAGAATATCGTCGTCGATGTTGGGTATGAAGGAAGCAACATCTCCTCTACAA AAATAAACGGCTTCAACGTCGGAATTGGATACCGTTTCTGAAAAGCATAAGCTATGCGGA AGGTTCGCCTTCCGCACCGCCAGTTACAAAACAGGGCTTCTTTACCAGTAACACGTACCT GCCTGTCTTTTCTCTCTTCGTCATACTCTCTTCGTCATAGTGACGCTGTACATAATATCT CACCAGCATAAGCACAGATAAAGGATTGTGGTAAGCAATCAAGGTTGCTCAGGTAGGTGA TAAGCAGGAAGGAAAATCTGGTGTAAATAACGCTAGATCTCACAGGATTCACTCTGAAAA ATTTTCCTGGAATTAATCACAATGTCATCAAGATTTTGTGATCGCCTTCGCATATTGTAC CTGCCGTTGAACGACTACTAAAAAGTAGCAAGGTATGTATTTTATCTAGGAGAGCACCTT TTTTGCGCCTGGCAGAAGTCCCCAGCCGCCACTAGCTCAGCTGGATAGAGCATCAACCTC CTAAGTTGATGGTGCGAGGTTCGAGGCCTCGGTGGCGGTCCAATGTGGTTATCGTATAAT GTTATTACCTCAGTGTCAGGCTGATGATGTGGGTTCGACTCCCACTGACCACTTCAGTTT TGAATAAGTATTGTCTTGCAATCCTGTTACAGAATAATTTCATTTATTACGTGACAAGAT AGTCATTTATAAAAAATGCACAAAAATGTTATTGTCTTTTATTACTTGTGAGTTGTAGAT TTTTCTTATGCGGTGAATCCCCCTTTGCGGCGGGGCGTCCAGTCAAATAGTTAATGTTCC TCGCGAACCATATTGACTGTGGTATGGTCCACCGGGAGGCACCCGGCACCGCAATTTTTT ATAAAATGAAATTCACACCCTATGGTTCAGAGCTGTGTTTTTACATCAGGTGGGCAAGCA TAATGCAGGTTAACTTGAAAGATACGAGCAATAACAGAAACCAGTGATTTCGTTTATGGC CTGGGGATTTAACCGCGCCAGAGCGTATGCAAGACCCTGGCGCGGTTGGCCGGTGATCGT TCAATAATGCGAATATGAATGGTTACCAGCCGCTGCGAATTCTACCTGGGTCACTTAATA AAGCAAAACATTTAAACACTCAACAACGACAATTCAGACAGTTCGAACTTTTCTTTAAAA ATAGGATTAACCATGTTTAAAAGTGGTTACTAATTAGCCATTATCCTACGGTAGTGATTC ACATATTCTTTAACGTTACGTTACAGGAAGGTTGAAGTGGAAATGCCTGATGAGCCTTCA GGCATTTCTGAAGGTTAGTTAGCTAAGGAACAGTTACTGAGAACAGGTTTATCATCACCT TCCACCAGTTTAGCCGTTTTGCCTTTGGTATAAAGTTTGTAAGTATAATTTTTGTCTATG GCTTCGTAATTTGCTCCGGAGGCCATTTTCATTAACCGCATCGGGATCATCTCGTTTACC TGACTGATAATCGCATAGGCGTTTCCAGCCTCGGTGTTGACGTAAATCACCTCCATAACC TGGTTATCATTACAGGTGTATATAGATTTAGAAATCTCCTGCGAAGCTGCTATAGAGGTG GTACTGGCGCTAAGCGCAGCGAGAAAGAGGGTAAATGGGATCAATTTACGTTTCATCATT AGTATCCTTTGTGTATAAAATTGTCGTTAATTCCCTGAAGAGCGGGAGATAAAGCGGCAT CAATACGATGAATGCTGTAGTATTCCTGTTTACTGACGAAAAGTGCGCCAGAAAAGCGTA TTATAATTTATCCATCACTGACATATGTGATGAGTAGACAAATCTTAAAATCATAAACTA TAGACTGCAAATCATTATGGCGCGATGGAAAATGATTGTCACCACTGCTCAATACTATGG CATAAAAACCGAAGAAAACGGTACTGTTCACTGTCTCGTTTCATACGGTATCTGTCAGTG AAACTATTTCTTCAAATGATGGTCTTTTTATTATCGATCAGATAATGGCATCAACAGGGG TTATTTAGGAGTATATGTGAAAAAGTGGCTTATAGGAGGGATATTGATCGCAAGTTTTCT GACCGGTTGTCTGATGTGGCACAACATTGATAAATGGTTTAATAAAGATATCGAAGTTTT CTACGCCGGAGACGATAACTAAAACTCCTGTCAGTTGGCAACGGGTGTCATATCTTCAGG TATGGCGCCCGGAGCAGCCGGGCGCAAATTGTAGGTGTATAAAAGTCATTTCATTAAAAT TTTAGCGACAACATGGACAGTCACTACCGCGTGCTAACGGCCCTCTGAAGTCACAAGATG AATAAGCCAGTTTTTTGTTTCAGCGGTGACTGAAACATATTTTGCTCCTGGTGGGCTTAC CGCCAGTTGCTGAAAAAGACAACGATGATGTAACTGTTGCAGAGACTGACGAATACGACG ACCGTGAGTTTTATTTTTGGCGACCATATTTCCTCCCAAAAGGCCGCCCGAAGGCGGCGC TGGGTTTGATAATGGAGAAGGGCGTTGGTCACTGCCATAACCAACCTGTATACACTAATG TAATTGATAATCATTATCAATTGTGGTGATGAAGAAAAATTGTAAAGATGAAGGGACAGC GGAAATGGCAATGAACGGGATGAGATTTTTCGTTAACCACTTAAATTCGTGACTAAAAAA AGTCTTTTATAGGCTTGAAAATGTTTTTTCCGTCCCTATGTAGTCAGTGGACAAGCAATG CTTGCCTTGATGTTGAACTTTTGAATAGTGATTCAGGAGGTTAATGATGGCACTCAGAAC CTTGTCAGCACTTCCCGTGTTTGCTGATTCTCTTTTCTCTGACCGTTTCAACCGTATTGA TAGACTTTTCAGTCAATTAACAGGAGATACGCCAGTCGCTGCGACGCCAGCTTACGATCT GCAAAAGCGCGATGCGAATAACTATCTGCTTACCGTGAGCGTTCCTGGCTGGAAAGAGGA AGAGCTTGAAATTGAAACGGTTGGCGGCAACCTGAATATTACGGGTAAACACACTGAAGA GACGGTAGAGGATCAGACGCACTGGATTTATCGTGGTATTCGTAAGGCAGATTTCCAGTT GAGTTTTTCTTTGCCTGAACATGCTAAGGTGAATAATGCAAAACTGGAACAGGGCCTCTT GTTGGTAGAGATTTACCAGGAAATCCCTGAAAGCGAGAAACCGAAAAAAATTGCCATAGA AAGCAAACCAAAGGCGATTGAACATAAATCATAA
Region Details
| Region | 1 |
| Region Length | 9.3Kb |
| Completeness(score) | incomplete(40) |
| Specific Keyword | lysin,tail,transposase |
| Region Position | 3927-13260 |
| # tRNA | 1 |
| # Total Proteins | 12 |
| # Phage Hit Proteins | 8 |
| # Hypothetical Proteins | 1 |
| Phage + Hypothetical Protein % | 75% |
| # Bacterial Proteins | 3 |
| Attachment Site | no |
| # Phage Species | 7 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_cdtI_NC_009514(2) PHAGE_Ralsto_RSL2_NC_028950(1) PHAGE_Pseudo_PhiPA3_NC_028999(1) PHAGE_Synech_S_CRM01_NC_015569(1) PHAGE_Escher_P2_NC_041848(1) PHAGE_Klebsi_Seifer_NC_048732(1) PHAGE_Bacter_APSE_2_NC_011551(1) PHAGE_Rhodof_P26218_NC_029061(1) PHAGE_Ralsto_RSF1_NC_028899(1) PHAGE_Entero_YYZ_2008_NC_011356(1) PHAGE_Pseudo_Bjorn_NC_042103(1) PHAGE_Lactoc_bIL312_NC_002671(1) PHAGE_Cyanop_S_TIM5_NC_019516(1) PHAGE_Entero_HK225_NC_019717(1) PHAGE_Entero_mEp237_NC_019704(1) PHAGE_Acinet_YMC11/11/R3177_NC_041866(1) PHAGE_Shigel_Sf6_NC_005344(1) PHAGE_Entero_BP_4795_NC_004813(1) PHAGE_Erwini_vB_EamP_S6_NC_019514(1) PHAGE_Cyanop_P_RSM1_NC_021071(1) PHAGE_Entero_fiAA91_ss_NC_022750(1) PHAGE_Agroba_Atu_ph07_NC_042013(1) PHAGE_Entero_phi80_NC_021190(1) PHAGE_Stx2_c_1717_NC_011357(1) PHAGE_Entero_mEp460_NC_019716(1) PHAGE_Prochl_Syn1_NC_015288(1) PHAGE_Pseudo_Lu11_NC_017972(1) PHAGE_Entero_mEp390_NC_019721(1) PHAGE_Entero_HK140_NC_019710(1) PHAGE_Acinet_Bphi_B1251_NC_019541(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 16.66% |
| GC % | 41.78% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NZ_WSUQ01000047.1| Salmonella enterica subsp. enterica serovar Typhi strain PHL3183 31030, gc%: 45.20%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 13 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 3927..4469 | PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; GQS45_RS21420; phage(gi422935930) | 1.78e-81 | Showinfo_outline |
| 2 | complement(4617..4994) | PHAGE_Pseudo_Lu11_NC_017972: putative tail assembly protein; GQS45_RS21425; phage(gi388684690) | 1.99e-18 | Showinfo_outline |
| 3 | complement(5067..5876) | PHAGE_Entero_cdtI_NC_009514: Cytolethal distending toxin B subunit; GQS45_RS21430; phage(gi148609410) | 1.12e-77 | Showinfo_outline |
| 4 | 6373..6537 | PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; GQS45_RS21435; phage(gi41057343) | 6.06e-06 | Showinfo_outline |
| 5 | complement(6749..6988) | PHAGE_Entero_HK225_NC_019717: DNA damage-inducible protein; GQS45_RS21440; phage(gi428782403) | 2.41e-45 | Showinfo_outline |
| 6 | complement(7179..7700) | ricin-type beta-trefoil lectin domain protein; GQS45_RS21445 | 0.0 | Showinfo_outline |
| 7 | complement(8118..8330) | PHAGE_Lactoc_bIL312_NC_002671: Csp; GQS45_RS21450; phage(gi13095918) | 4.51e-06 | Showinfo_outline |
| 8 | complement(8462..8725) | virulence protein PagD; GQS45_RS21455 | 0.0 | Showinfo_outline |
| 9 | 9530..10087 | PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; GQS45_RS21460; phage(gi148609401) | 7.62e-25 | Showinfo_outline |
| 10 | 10492..10568 | tRNA | 0.0 | Showinfo_outline |
| 11 | complement(11321..11665) | c-type lysozyme inhibitor; GQS45_RS21470 | 0.0 | Showinfo_outline |
| 12 | 12368..12595 | hypothetical protein; GQS45_RS21480 | 0.0 | Showinfo_outline |
| 13 | 12793..13260 | PHAGE_Agroba_Atu_ph07_NC_042013: 16 kDa heat shock protein A; GQS45_RS21485; phage(gi100710) | 8.41e-19 | Showinfo_outline |
Sequence
>3927..4469
SalmonellaentericasubspentericaserovarTyphiMTKDEIFAAILSREGGYVDHPDDRGGPTHWGITLTTARANGYMGDMRNLTRNQALKILEADYWYGPRLDQVAIISHSIAAELCDTGVNMGPSIPIKYFQRWLNVFNDQQKIYPDLIADGQIGPRTLSALTFFLSHRRDEGEMILIRALNCSQGQRYLELAEKRQANESFVYGWIKERVRL
Sequence
>complement(4617..4994)
SalmonellaentericasubspentericaserovarTyphiMSCFTSPAIMEMLGHYKWRVYEPFRFYLSEDKNDVIEVPVGFVTDLATVPRIFWSLLPPDGEYAKAAIIHDYLYHYPLRNRKESDLIFLDGMKVLGVPKWKRIIMYLAVRIFGWKYYHSHTIQHN
Sequence
>complement(5067..5876)
SalmonellaentericasubspentericaserovarTyphiMKKPVFFLLTMIICSYISFACANISDYKVMTWNLQGSSASTESKWNVNVRQLLSGTAGVDILMVQEAGAVPTSAVPTGRHIQPFGVGIPIDEYTWNLGTTSRQDIRYIYHSAIDVGARRVNLAIVSRQRADNVYVLRPTTVASRPVIGIGLGNDVFLTAHALASGGPDAAAIVRVTINFFRQPQMRHLSWFLAGDFNRSPDRLENDLMTEHLERVVAVLAPTEPTQIGGGILDYGVIVDRAPYSQRVEALRNPQLASDHYPVAFLARSC
Sequence
>6373..6537
SalmonellaentericasubspentericaserovarTyphiMNKKTKQINGYILNGYNSVRPHHYNGALTPEESENRYRFYCKTVTNSVDAQQNV
Sequence
>complement(6749..6988)
SalmonellaentericasubspentericaserovarTyphiMFVELVYDKRNVEGLPSAREIILNELTKRVHQLFPDAQVKVKPMQANALNSDCTKTEKERLHRMLEEMFEEADMWLVAE
Sequence
>complement(7179..7700)
SalmonellaentericasubspentericaserovarTyphiMTLLSGKNTLVLCLSSILCGCTTNGLPAPYSINLSFPVITQNQINSGGYYINDAEQIRTTDGLCLDTGPDQQNRLTLRECKHVQSQLFSFHRDRITQGEKCLDAAGQGTKEGTPIILYSCTGNDNQRWLTDDNKIKGKQSRKCLGTNSIIVRKGDPVVLADCDFSRALEFTIR
Sequence
>complement(8118..8330)
SalmonellaentericasubspentericaserovarTyphiMSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLRGPTAANVYLS
Sequence
>complement(8462..8725)
SalmonellaentericasubspentericaserovarTyphiMKHHAFMLWSLLIFSFHVLASSDHCSGLQQASWEIFIYDFGSKTPQPPTNTDKKQARQISSPSCPTAKPMMSAPTNDARKGNTFSRT
Sequence
>9530..10087
SalmonellaentericasubspentericaserovarTyphiMKNIILSTLVITTSVLVVNVAQADTNAFSVGYAQSKVQDFKNIRGVNVKYRYEDDSPVSFISSLSYLYGDSQDSGSIESEGIHYHDKFEVKYGSLMVGPAYRLSDNFSLYALAGVGTVKATFKEHATQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVVDVGYEGSNISSTKINGFNVGIGYRF
Sequence
>10492..10568
CCGCCACTAGCTCAGCTGGATAGAGCATCAACCTCCTAAGTTGATGGTGCGAGGTTCGAGGCCTCGGTGGCGGTCCA
Sequence
>complement(11321..11665)
SalmonellaentericasubspentericaserovarTyphiMMKRKLIPFTLFLAALSASTTSIAASQEISKSIYTCNDNQVMEVIYVNTEAGNAYAIISQVNEMIPMRLMKMASGANYEAIDKNYTYKLYTKGKTAKLVEGDDKPVLSNCSLAN
Sequence
>12368..12595
SalmonellaentericasubspentericaserovarTyphiMLLVGLPPVAEKDNDDVTVAETDEYDDREFYFWRPYFLPKGRPKAALGLIMEKGVGHCHNQPVYTNVIDNHYQLW
Sequence
>12793..13260
SalmonellaentericasubspentericaserovarTyphiMALRTLSALPVFADSLFSDRFNRIDRLFSQLTGDTPVAATPAYDLQKRDANNYLLTVSVPGWKEEELEIETVGGNLNITGKHTEETVEDQTHWIYRGIRKADFQLSFSLPEHAKVNNAKLEQGLLLVEIYQEIPESEKPKKIAIESKPKAIEHKS
Salmonella enterica subsp
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 31030 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Locus 1: GQS45_RS21420 (Region 1)
Locus: GQS45_RS21420ORF Start: 3927
ORF Stop: 4469
Strand: Forward
Protein Sequence: MTKDEIFAAILSREGGYVDHPDDRGGPTHWGITLTTARANGYMGDMRNLTRNQALKILEADYWYGPRLDQVAIISHSIAAELCDTGVNMGPSIPIKYFQRWLNVFNDQQKIYPDLIADGQIGPRTLSALTFFLSHRRDEGEMILIRALNCSQGQRYLELAEKRQANESFVYGWIKERVRL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GQS45_RS21420, endolysin, phage(gi422935930), PHAGE_Erwini_vB_EamP_S6_NC_019514
Homolog/Ortholog E-Value: 1.78e-81
Locus 2: GQS45_RS21425 (Region 1)
Locus: GQS45_RS21425ORF Start: 4617
ORF Stop: 4994
Strand: Backward
Protein Sequence: MSCFTSPAIMEMLGHYKWRVYEPFRFYLSEDKNDVIEVPVGFVTDLATVPRIFWSLLPPDGEYAKAAIIHDYLYHYPLRNRKESDLIFLDGMKVLGVPKWKRIIMYLAVRIFGWKYYHSHTIQHN
Homolog/Ortholog Species: Tail protein
Homolog/Ortholog Protein: GQS45_RS21425, putative tail assembly protein, phage(gi388684690), PHAGE_Pseudo_Lu11_NC_017972
Homolog/Ortholog E-Value: 1.99e-18
Locus 3: GQS45_RS21430 (Region 1)
Locus: GQS45_RS21430ORF Start: 5067
ORF Stop: 5876
Strand: Backward
Protein Sequence: MKKPVFFLLTMIICSYISFACANISDYKVMTWNLQGSSASTESKWNVNVRQLLSGTAGVDILMVQEAGAVPTSAVPTGRHIQPFGVGIPIDEYTWNLGTTSRQDIRYIYHSAIDVGARRVNLAIVSRQRADNVYVLRPTTVASRPVIGIGLGNDVFLTAHALASGGPDAAAIVRVTINFFRQPQMRHLSWFLAGDFNRSPDRLENDLMTEHLERVVAVLAPTEPTQIGGGILDYGVIVDRAPYSQRVEALRNPQLASDHYPVAFLARSC
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GQS45_RS21430, Cytolethal distending toxin B subunit, phage(gi148609410), PHAGE_Entero_cdtI_NC_009514
Homolog/Ortholog E-Value: 1.12e-77
Locus 4: GQS45_RS21435 (Region 1)
Locus: GQS45_RS21435ORF Start: 6373
ORF Stop: 6537
Strand: Forward
Protein Sequence: MNKKTKQINGYILNGYNSVRPHHYNGALTPEESENRYRFYCKTVTNSVDAQQNV
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: GQS45_RS21435, putative transposase OrfB, phage(gi41057343), PHAGE_Shigel_Sf6_NC_005344
Homolog/Ortholog E-Value: 6.06e-06
Locus 5: GQS45_RS21440 (Region 1)
Locus: GQS45_RS21440ORF Start: 6749
ORF Stop: 6988
Strand: Backward
Protein Sequence: MFVELVYDKRNVEGLPSAREIILNELTKRVHQLFPDAQVKVKPMQANALNSDCTKTEKERLHRMLEEMFEEADMWLVAE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GQS45_RS21440, DNA damage-inducible protein, phage(gi428782403), PHAGE_Entero_HK225_NC_019717
Homolog/Ortholog E-Value: 2.41e-45
Locus 6: GQS45_RS21445 (Region 1)
Locus: GQS45_RS21445ORF Start: 7179
ORF Stop: 7700
Strand: Backward
Protein Sequence: MTLLSGKNTLVLCLSSILCGCTTNGLPAPYSINLSFPVITQNQINSGGYYINDAEQIRTTDGLCLDTGPDQQNRLTLRECKHVQSQLFSFHRDRITQGEKCLDAAGQGTKEGTPIILYSCTGNDNQRWLTDDNKIKGKQSRKCLGTNSIIVRKGDPVVLADCDFSRALEFTIR
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GQS45_RS21445, ricin-type beta-trefoil lectin domain protein
Homolog/Ortholog E-Value: N/A
Locus 7: GQS45_RS21450 (Region 1)
Locus: GQS45_RS21450ORF Start: 8118
ORF Stop: 8330
Strand: Backward
Protein Sequence: MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLRGPTAANVYLS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GQS45_RS21450, Csp, phage(gi13095918), PHAGE_Lactoc_bIL312_NC_002671
Homolog/Ortholog E-Value: 4.51e-06
Locus 8: GQS45_RS21455 (Region 1)
Locus: GQS45_RS21455ORF Start: 8462
ORF Stop: 8725
Strand: Backward
Protein Sequence: MKHHAFMLWSLLIFSFHVLASSDHCSGLQQASWEIFIYDFGSKTPQPPTNTDKKQARQISSPSCPTAKPMMSAPTNDARKGNTFSRT
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GQS45_RS21455, virulence protein PagD
Homolog/Ortholog E-Value: N/A
Locus 9: GQS45_RS21460 (Region 1)
Locus: GQS45_RS21460ORF Start: 9530
ORF Stop: 10087
Strand: Forward
Protein Sequence: MKNIILSTLVITTSVLVVNVAQADTNAFSVGYAQSKVQDFKNIRGVNVKYRYEDDSPVSFISSLSYLYGDSQDSGSIESEGIHYHDKFEVKYGSLMVGPAYRLSDNFSLYALAGVGTVKATFKEHATQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVVDVGYEGSNISSTKINGFNVGIGYRF
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GQS45_RS21460, putative Lom-like outer membrane protein, phage(gi148609401), PHAGE_Entero_cdtI_NC_009514
Homolog/Ortholog E-Value: 7.62e-25
Locus 10: tRNA (Region 1)
Locus: tRNAORF Start: 10492
ORF Stop: 10568
Strand: Backward
Protein Sequence: PPLAQLDRASTSVDGARFEASVAVCA
Homolog/Ortholog Species: Trna
Homolog/Ortholog Protein: tRNA
Homolog/Ortholog E-Value: N/A
Locus 11: GQS45_RS21470 (Region 1)
Locus: GQS45_RS21470ORF Start: 11321
ORF Stop: 11665
Strand: Backward
Protein Sequence: MMKRKLIPFTLFLAALSASTTSIAASQEISKSIYTCNDNQVMEVIYVNTEAGNAYAIISQVNEMIPMRLMKMASGANYEAIDKNYTYKLYTKGKTAKLVEGDDKPVLSNCSLAN
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GQS45_RS21470, c-type lysozyme inhibitor
Homolog/Ortholog E-Value: N/A
Locus 12: GQS45_RS21480 (Region 1)
Locus: GQS45_RS21480ORF Start: 12368
ORF Stop: 12595
Strand: Forward
Protein Sequence: MLLVGLPPVAEKDNDDVTVAETDEYDDREFYFWRPYFLPKGRPKAALGLIMEKGVGHCHNQPVYTNVIDNHYQLW
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GQS45_RS21480, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 13: GQS45_RS21485 (Region 1)
Locus: GQS45_RS21485ORF Start: 12793
ORF Stop: 13260
Strand: Forward
Protein Sequence: MALRTLSALPVFADSLFSDRFNRIDRLFSQLTGDTPVAATPAYDLQKRDANNYLLTVSVPGWKEEELEIETVGGNLNITGKHTEETVEDQTHWIYRGIRKADFQLSFSLPEHAKVNNAKLEQGLLLVEIYQEIPESEKPKKIAIESKPKAIEHKS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GQS45_RS21485, 16 kDa heat shock protein A, phage(gi100710), PHAGE_Agroba_Atu_ph07_NC_042013
Homolog/Ortholog E-Value: 8.41e-19
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download