Submission Results
Sequence Name: Not Available
GenBank Accession Number: 691253436 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 691253436.PHASTER.zip
gi|00000000|ref|NC_025186.1| Klebsiella pneumoniae subsp. pneumoniae strain OW16C2 plasmid 59228, gc%: 52.13%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 9.5Kb | incomplete | 40 | 10 | 193-9772 info_outline | PHAGE_Entero_P1_NC_005856(2) | 54.03% | Show info_outline |
Region DNA
>1 193-9772 ATGGATAAGTTGCTGAACAAAAAGATAAAAGTTAAGCAGTCTAACGAGCTTACCGAAGCTGCTTACTACC TCTCGCTAAAAGCAAAGCGCGTTCTCTGGTTATGTCTTATGCAGACGTATTTCACAGCTTCAGTAAGCGA AGATGATGATGAGATGGCTGTACTCGGTGACTCTACTTTCAAAGTAAAGGTGGCTGACTATGAGCAAATT TTTCAGGTAAGCCGTAACCAGGCTATCAAGGATGTTAAAGAAGGCGTGTTTGAGTTAAGCCGTTCTGCGG TAATCTTTTACCCGAAAGAAGGAAGTTTTGACTGCGTCGCGCGCCCCTGGCTAACAGAGGCTGGCAGCCG ATCAGCTCGTGGTATCTGGGAAATCGAATTTAACCATAAACTCCTGCGGTACATTTACGGCCTGACGAAC CAGTTCACCACCTACTCGCTCCGCGATTGTGGCAGTCTTCGAAATCCACGGACGATCCGCCTTTATGAAA GTCTTGCTCAATTCAAATCTTCAGGCTTATGGGTTACTACTCATGCTTGGTTAAATGACCGTTTCCTTTT GCCGGAATCCCAACAGAAGAACTTGGCAGAGTTGAAACGATCTTTCCTTGATCCTGCACTCAAGCAGATA AATGAGAAAACACCTTTACTTGCTAAGTATAGTATTGATGATTCAGGAAAATTTCTGTTCTCAATAATTG ATAAGCAAAATCCCGTCTGACATAAATCAGCACACATGAGCCTGTCATTTGACAAATTTTTGTCATGAAG ATGGGCGAATTTCCACACAGCACCGGCGCCCGGCAAGGTGGGCGGATTCCCACACGGCACCGGCGCCCGG CAAGGTGGGCGGATTCCCACACGGCACCGGCGCCCGGCAAGGTGGGCGGATTCCCACACGGCACCGGCGC CCGGCAAGGTGGGCGGATTCCCACACGGCTCCGGCGCCCGGAAAGGGTGGGCGGATTTCCACACAGCACC GGCGCCCGGCAAGGTGGGCGGATTCCCACACGGCACCGGCGCCCGGAAAGGGTGGGCGGATTTCCACACA GCACCGGCGCCCGGCAAGGTGGGCGGATTTCCACACGGCACCGGCGCCCGGCAAGGTGGGCGGATTCCCA CACGGCACCGGCGCCCGGCAAGGTGGGCGGATTCCCACACGGCTCCGGCGCCCGGCAAGGTGGGCGGATT CCCACACGGCACCGGCGCCCGGCAAGGTGGGCGGATTCCCACACGGCTCCGGCGCCCGGAAAGGGTGGGC GGATTTCCACACAGCACCGGCGCCCGGCAAGGTGGGCGGATTCCCACACGGCACCGGCGCCCGGCAAGGT GGGCGGATTCCCACACGGCTCCGGCGCCCGGAAAGGGTGGGCGGATTTCCACACAGCACCGGCGCCCGGC AAGGTGGGCGGATTCCCACACGGCACCGGCGCCCGGAAAGGGTGGGCGGATTTCCACACAGCACCGGCGC CCGGCAAGGTGGGCGGATTTCCACACGGCACCGGCGCCCGGCAAGGTGGGGGGATTCCCACACGGCACCG GCGCCCGGCAAGGTGGGCGGATTCCCACACGGCACCGGCGCCCGGCAAGGTGGGCGGATTCCCACACAGC ACCGGCGCCCGGCAAGGTGGGCGGATTCCCACACAGCACCGGCGCCCGGCAAGGTGGGCGGATTCCCACA CGGCACCGGCGCCCGGCAAGGTGGGCGGATTTCCACACGGCACCGGCACCCGGCAAGGTGGGCGGATTCC CACACGGCACCGGCGCCCGGCAAGGTGGGCGGATTTCCACACAGCACCGGCGCCCGGCAAGGTGGGTGGA TTCCCACACGGCACCGGCGCCCGGTAAGGTGGGCGGATTTCCACACGACAGCGGCGCCCGGCAAGATGGG CGGATTCCCATATCGACATGTATGTAGCTTGTGTTATCCGTGGATTGTGCAGCTCAGCGGGTCGCTGGTC GTATGGCGTAGTGTCCCCCGTAACCGGCCGCGTGCGGCCGCTAACTCGCAGTACGGCGCCGCGACCCGAA GGCGGGCCGCCGTTCCCGCGCGCAGGCGCGCGGCGCCCACTGCGCACCCCCGTGGGGGACATACGGCAGC TGTGTGGCGGTGAGCGGGATTAGGGCTTTGCAGGGAGGGGGCTGGGTCGGGCGATACGTTCAGCATTGCG GTTTCCGGCGATTTGCGGCCGGTGCCCGTTTAACTCCGGCGTGGTCGCCTTCCATGCCCTGACGGCATAA GAAAATAAAACCGCCATGCTGCGGTCATTCATGATTTTGTGGTGTAGCGATAAATAGTCATGCGAGAAAC GTTGAAGCGCTTAGCAACTGCACCAACTGTCATTTCAGGATCAGCAAGTAAGATTCTAATTTGTTTAACA TCTTCTTCAGAAAGTGACGGTTTTCTCCCTCCCACACGGCCCCTTGCGCGTGCAGCTGCAAGGCCTGAGC GCGTTCTTTCAATATTGCGGTTGCGTTCAAAGCTAGAGAATATCGCCATCAGATGAGTATAGATTTCCCC TATAACTGGCGCATTTGTGTCTATTCTGTCCTTGATGGCTATGAAAGTTATTCCGCGTTTCTTCAGGTCG TCGAGTAAAGTAATGACTTGACCCAATGAACCGCCGAGCCGATCTAGTGCCCAAACTACTAGGGTATCTC CCTCGCGCAATGCTTTCAGGCAGTTCTCCAGTTCCGGCGCACCTTTTTTGTCGCGCTTTGGGCCGCTACG TGAGGTCTGATCCTGATAGATTTGCTCACATCCAGCTTTTGTTAGTTCGTCAACCTGGTGCGCCACATCC TGAAGATGCGTAGATTTACGTGCATAGCCGATTTTCATTCTTTTCTCGCTAATTAGTTATGGGGTTATTG TTATGTTGATACAGTAACGAGTTTTGTTACATGAGGGGAGTCATTTTTCGGGAGAAGTCAGGACTTTTCA AGACTGTCACAAAAACCATCGTTTTTGATACATTAATTTAACCAATAGGTTGCAGATCAAATCGCCTGTA ACAGCCTTTCTGGCTGTTTGTCGTTTTCAGAAGACGGCTGCACTGAACGTCAGAAGCCGACTGCACTATA GCAGCGGAGGGGTTGGATCCATCAGGCAACGACGGGCTGCTGCCGGCCATCAGCGGACGCAGGGAGGACT TTCCGCAACCGGCCGTTCGATGCGGCACCGATGGCCTTCGCGCAGGGGTAGTGAATCCGCCAGGATTGAC TTGCGCTGCCCTACCTCTCACTAGTGAGGGGCGGCAGCGCATCAAGCGGTGAGCGCACTCCGGCACCGCC AACTTTCAGCACATGCGTGTAAATCATCGTCGTAGAGACGTCGGAATGGCCGAGCAGATCCTGCACGGTT CGAATGTCGTAACCGCTGCGGAGCAAGGCCGTCGCGAACGAGTGGCGGAGGGTGTGCGGTGTGGCGGGCT TCGTGATGCCTGCTTGTTCTACGGCACGTTTGAAGGCGCGCTGAAAGGTCTGGTCATACATGTGATGGCG ACGCACGACACCGCTCCGTGGATCGGTCGAATGCGTGTGCTGCGCAAAAACCCAGAACCACGGCCAGGAA TGCCCGGCGCGCGGATACTTCCGCTCAAGGGCGTCGGGAAGCGCAACGCCGCTGCGGCCCTCGGCCTGGT CCTTCAGCCACCATGCCCGTGCACGCGACAGCTGCTCGCGCAGGCTGGGTGCCAAGCTCTCGGGTAACAT CAAGGCCCGATCCTTGGAGCCCTTGCCCTCCCGCACGATGATCGTGCCGTGATCGAAATCCAGATCCTTG ACCCGCAGTTGCAAACCCTCACTGATCCGCATGCCCGTTCCATACAGAAGCTGGGCGAACAAACGATGCT CGCCTTCCAGAAAACCGAGGATGCGAACCACTTCATCCGGGGTCAGCACCACCGGCAAGCGCCGCGACGG CCGAGGTCTTCCGATCTCCTGAAGCCAGGGCAGATCCGTGCACAGCACCTTGCCGTAGAAGAACAGCAAG GCCGCCAATGCCTGACGATGCGTGGAGACCGAAACCTTGCGCTCGTTCGCCAGCCAGGACAGAAATGCCT CGACTTCGCTGCTGCCCAAGGTTGCCGGGTGACGCACACCGTGGAAACGGATGAAGGCACGAACCCAGTG GACATAAGCCTGTTCGGTTCGTAAACTGTAATGCAAGTAGCGTATGCGCTCACGCAACTGGTCCAGAACC TTGACCGAACGCAGCGGTGGTAACGGCGCAGTGGCGGTTTTCATGGCTTGTTATGACTGTTTTTTTGTAC AGTCTATGCCTCGGGCATCCAAGCAGCAAGCGCGTTACGCCGTGGGTCGATGTTTGATGTTATGGAGCAG CAACGATGTTACGCAGCAGGGCAGTCGCCCTAAAACAAAGTTAACCCAGGATGAGAACCTTGAAAGTATC ATTGATGGCTGCGAAAGCGAAAAACGGCGTGATTGGTTGCGGTCCAGACATACCCTGGTCCGCGAAAGGG GAGCAGCTACTTTTTAAAGCATTGACCTACAATCAGTGGCTTCTGGTGGGTCGCAAGACGTTTGAATCTA TGGGCGCACTCCCCAATAGGAAATACGCGGTCGTTACCCGCTCAGGTTGGACATCAAATGATGACAATGT AGTTGTATTTCAGTCAATCGAAGAGGCCATGGACAGGCTAGCTGAATTCACCGGTCACGTTATAGTGTCT GGTGGCGGAGAAATTTACCGAGAAACATTACCCATGGCCTCTACGCTCCACTTATCGACGATCGACATCG AGCCAGAGGGGGATGTTTTCTTCCCGAGTATTCCAAATACCTTCGAAGTTGTTTTTGAGCAACACTTTAC TTCAAACATTAACTATTGCTATCAAATTTGGAAAAAGGGTTAACAAAGCTATGCAATCGACGGCAAAAAG CTTCGTTCGCTTCGCGCACTACGCCTTTTCCGCGATTGATAGCGACGTTATGTGAATATTGAAATGAGCA TTCCAAAGAAAGGAAGTAGAAAAATTATCGTGGGCGAAAATGAGTTTTTGTGGCTCATTAGGTCAAAACT CACATATTCGCAGGACTGTTTAGGTACAGAAATGACTGCGGTCGTTGAACCGGATGCCGGTCCTCACTGA TGAAGAAGTGAACACCGTACGGGAATCGTGCCGGCAGCTTGGAGCTATCGGCCGGAACCTCAACCAGGTG GCCAGGGCCTTGAACATCGAGTTCAGGGAAAGTGACAAGCTCAAGCAAGAGGCCATCGAAAAACTGGCCG AACGGATCGACCAGCATTTGGACCATGTGTCTGAGCTGTTCGATAAGACCTGGAGCCGGTGGCACGATTG TCATTTTCAGAAGACGACTGCACCAGTTGATTGGGCGTAATGGCTGTTGTGCAGCCAGCTCCTGACAGTT CAATATCAGAAGTGATCTGCACCAATCTCGACTATGCTCAATACTCGTGTGGGCTCTGTTGCAAAAATCG TGAAGCTTGAGCATGCTTGGCGGAGATTGGACGGACGGAACGATGACGGATTTCAAGTGGCGCCATTTCC AGGGTGATGTGATCCTGTGGGCGGTGCGCTGGTATTGTCGCTATCCGATCAGCTATCGCGACCTTGAGGA AATGCTGGCGGAACGCGGCATTTCGGTCGACCATACGACGATCTATCGCTGGGTCCAGTGCTACGCCCCG GAGATGGAGAAGCGGCTGCGCTGGTTCTGGCGGCGTGGCTTTGATCCGAGCTGGCGCCTGGATGAAACCT ACGTCAAGGTGCGGGGCAAGTGGACCTACCTGTACCGGGCAGTCGACAAGCGGGGCGACACGATCGATTT CTACCTGTCGCCGACCCGCAGCGCCAAGGCAGCGAAGCGGTTCCTGGGCAAGGCCCTGCGAGGCCTGAAG CACTGGGAAAAGCCTGCCACGCTCAATACCGACAAAGCGCCGAGCTATGGTGCAGCGATCACCGAATTGA AGCGCGAAGGAAAGCTGGACCGGGAGACGGCCCACCGGCAGGTGAAGTATCTCAATAACGTGATCGAGGC CGATCACGGAAAGCTCAAGATACTGATCAAGCCGGTGCGCGGTTTCAAATCGATCCCCACGGCCTATGCC ACGATCAAGGGATTCGAAGTCATGCGAGCCCTGCGCAAAGGACAGGCTCGCCCCTGGTGCCTGCAGCCCG GCATCAGGGGCGAGGTGCGCCTTGTGGAGAGAGCTTTTGGCATTGGGCCCTCGGCGCTGACGGAGGCCAT GGGCATGCTCAACCACCATTTCGCAGCAGCCGCCTGATCGGCGCAGAGCGACAGCCTACCTCTGACTGCC GCCAATCTTTGCAACAGAGCCTCCGTCGCCATGCTCACCTCGCTTTGGTGCACACGAGTATTGAGCATAG TCGAGATTGGTGCAGATCACTTCTGATATTGAACTGTCAGGAGCTGGCTGCACAACAGCCATTACGCCCA ATCAACTGGTGCAGTCGTCTTCTGAAAATGACACTGTTTGTATATAATCATGAAAAAATGGTGAGTAGAG TTTCAGGGTAACAGGGGATGCTTATGTCGGTTTTCCACAACTGGCTACTTGAGATCGCATGTGAGAATTA CTTCGTCTACATCAAACGCCTTTCCGCCAACGATACCGGCGCAACAGGTGGTCACCAGGTAGGGCTTTAT ATCCCTTCAGGTATCGTTGAAAAACTCTTTCCGTCTATCAACCATACCCGTGAACTGAACCCTTCGGTTT TTCTCACCGCACATGTGTCATCGCATGATTGCCCTGACAGCGAAGCCAGGGCAATTTATTATAACAGCCG TCATTTTGGTAAAACCCGGAATGAAAAAAGGATTACCCGCTGGGGTAGAGGCAGCCCACTTCAGGATCCT GAAAATACAGGGGCTCTGACGCTCCTGGCTTTCAAGCTTGATGAGCAAGGGGGGGACTGTAAGGAAGTAA ATATTTGGGTATGCGCCAGCACTGATGAAGAGGACGTCATTGAGACCGCTATTGGTGAAGTTATACCCGG AGCGCTTATATCCGGCCCCGCAGGACAGATTCTAGGCGGACTATCTCTACAGCAAGCGCCAGTAAATCAT AAATATATTCTACCTGAAGACTGGCACCTGCGCTTTCCGTCGGGAAGTGAAATTATTCAGTATGCAGCCA GCCATTATGTGAAAAATTCCCTTGATCCGGATGAGCAACTTCTTGACCGCCGGCGCGTGGAGTACGACAT ATTTCTATTGGTTGAGGAACTGCATGTTCTGGATATCATCCGGAAAGGATTTGGCTCTGTGGATGAATTT ATTGCGCTGGCCAATTCTGTCAGCAATCGCCGTAAATCCAGAGCCGGGAAGTCGCTGGAACTGCACCTGG AGCATCTATTCATTGAGCACGGCCTGCGACACTTTGCGACGCAGGCCATCACAGAAGGTAATAAAAAACC CGATTTCCTTTTCCCTTCCGCAGGGGCTTACCACGATACTGAGTTTCCCGTAGAAAATCTGCGCATGCTG GCAGTCAAGACTACCTGTAAGGATCGCTGGCGTCAGATACTGAATGAGGCCGATAAAATTCATCAGGTGC ATCTGTTTACACTCCAGGAGGGAGTTTCTCTGGCTCAATATCGGGAGATGCGGGAGTCGGGTGTCAGATT GGTCGTGCCATCATCTCTGCACAAAAAATACCCGGAGGCGGTGAGAGCTGAGCTAATGACGCTAGGTGCG TTTATTGCTGAGCTGACAGGGCTTTACGCAGATATTCCATAGATTATCTCCCGGCATAAATACCGGGAGG AGCGATCAGATTCGTTCAACCTTGCACGAATCGGCATTAACCGCTTTCAGGATATAAGGTTCAAGCAGTT TGGCTACGGCTTCAAACACGGGCACCACTACGGAGTTACCGAACTGCCTGTACGACTGAGTGTCTGACAC AGGAATGCGAAAAGGCCTGCCATCTACTTTTTCAAAACCCATAAGGCGCGCGCACTCTCGCGGAGTCAGC CTGCGGGGCCGATGCGCCTGATTTTCTTCGTTCGCGAAGTCTGTTTCACCTGTGGCCATATCCCAGCCAC GGTCTATCAGAATTTCAGACCCGTCTTTGTGATAGCGAGCAGAAAGCGTACGGGCAATGCTTTCTTTATT TTCAGGATTAACGAGGCCAAAACCGAATCCGTTACCCTTAGCTGCGTGCTTTTTGGCGTAGTTATAGAGA TACTCCCAGAGTTTCGGCGTCAGTATATATTTGCTGTCAACCACGGGTTCCAGCAGTTCGCCAAATGACG GACGCTGTTCCGGATAAAAACGACTAATATCGCGCAGGGTAAAGCCCTGGTGAATGTTCAGATCACGGCG GAAACCGACCAAAACGATACGTTCTCGGTGCTGAGGTAAAAAGTGCTTTCCGTCGATAACTTTAGGATCG TTTTTGCCCATCTCAGCTGCATCCGCAACTTCATAGCCCAGTTCGTCGAGGGTATCCATGATGACTTTAA AGGTTTTACCCTTGTCATGGCTCTTCAGGTTTTTAACGTTTTCAAGAACAAAGATGGCAGGTTTTTTTGC GCGGATAATACGCGCCACATCGAAGAAAAGCGTTCCCTGAGCCTCACATTCGAAACCATGCGCGCGCCCG AGCGAGTTTTTCTTGCTTACGCCCGCAAGGCTAAACGGTTGACAGGGGAAACCTGCTAGAAGTACATCAT GATCCGGCACATGCTCATTAATGTAAGCATAGGCATCGTTTTCAGGTACTTCAGGTTTATCACTGAGCGT GACTTCACGAATATCGAGATTGAAAGTGTGTTCCTGAGCATCGTTAAACCAGTTAGCTTTATATGTGCGC ACAGCCTCTTTATTCCATTCACTGGTAAAAACGCACTGGCCACCGATGGTTTCGAAGCCCTTCCGTATAC CTCCAATCCCAGCAAACAGGTCAATAAACCGGAAGGCATAGTCAGGGTGATGTGCAGGCGCTTCCGGAAG CATTTTTCGTAGAAGTTCCTCTTCGGCTAACGTCAGCGTCTTAGGTGAGCACTTACCATTAATCCAGCGA TTAAGAGTCTCGCGACTCCACTCATTTTTACCAACTTTTCTAAGCAGTTCAGCCACGTACTTCTGGTCAT AGATTTCCAGCACCTGCCCGAGCAGCTTTTTATCATTTTCCTGTCGCAGTTGTTCTTCCGCTTCTGCTTT CTCAAGCAGATCCTGCGCCAGTAATTCAAATTCAGACATATTGCCTCCATTGGGTCTTATGGGTGAAACT GTATCACTCATTTGACCCAGATTGAATGTTTTTATCTGGATATTTAAACAGGTTTATTGTTAGGTAACGC ACGTTGGCCACGCTGGAGCGTCTTCTGGGCCTGCTGTCGGCCTTTGAGGTCGTGGTATGGATGACGGATG GCTGGCCGCTGTATGAACCCCGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCAT TGAGCGACATAACCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTCACTGTCGTTCTCAAAA TCGGTGGAGCTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAA
Region Details
| Region | 1 |
| Region Length | 9.5Kb |
| Completeness(score) | incomplete(40) |
| Specific Keyword | integrase,transposase |
| Region Position | 193-9772 |
| # tRNA | 0 |
| # Total Proteins | 10 |
| # Phage Hit Proteins | 8 |
| # Hypothetical Proteins | 2 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_P1_NC_005856(2) PHAGE_Staphy_SPbeta_like_NC_029119(2) PHAGE_Burkho_KS14_NC_015273(2) PHAGE_Burkho_KL3_NC_015266(2) PHAGE_Mycoba_Shipwreck_NC_031261(1) PHAGE_Citrob_Miller_NC_025414(1) PHAGE_Mycoba_Charlie_NC_023729(1) PHAGE_Shigel_SfIV_NC_022749(1) PHAGE_Erwini_vB_EamM_ChrisDB_NC_031126(1) PHAGE_Entero_Mu_NC_000929(1) PHAGE_Entero_RB43_NC_007023(1) PHAGE_Bacill_BCP78_NC_018860(1) PHAGE_Brevib_Jenst_NC_028805(1) PHAGE_Citrob_vB_CfrM_CfP1_NC_031057(1) PHAGE_Mycoba_Butters_NC_021061(1) PHAGE_Bacill_Blue_NC_031056(1) PHAGE_Salmon_Fels_2_NC_010463(1) PHAGE_Escher_pro483_NC_028943(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 20% |
| GC % | 54.03% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NC_025186.1| Klebsiella pneumoniae subsp. pneumoniae strain OW16C2 plasmid 59228, gc%: 52.13%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 10 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 193..912 | PHAGE_Burkho_KS14_NC_015273: gp37; D647_p55001; phage(gi327198306) | 2.98e-18 | Showinfo_outline |
| 2 | 963..2039 | hypothetical protein; D647_p55002 | 0.0 | Showinfo_outline |
| 3 | complement(2461..3030) | PHAGE_Burkho_KS14_NC_015273: gp6; D647_p55003; phage(gi327198275) | 3.60e-47 | Showinfo_outline |
| 4 | complement(3423..4436) | PHAGE_Mycoba_Butters_NC_021061: integrase; D647_p55004; phage(gi479336499) | 2.05e-12 | Showinfo_outline |
| 5 | 4583..5065 | PHAGE_Bacill_Blue_NC_031056: hypothetical protein; D647_p55005; phage(gi100007) | 1.15e-22 | Showinfo_outline |
| 6 | 5286..5552 | hypothetical protein; D647_p55006 | 0.0 | Showinfo_outline |
| 7 | 5665..6459 | PROPHAGE_Brucel_1330: transposase, putative; D647_p55007; phage(gi23502708) | 4.49e-55 | Showinfo_outline |
| 8 | 6720..7934 | PHAGE_Burkho_KL3_NC_015266: gp45; D647_p55008; phage(gi327198090) | 1.14e-40 | Showinfo_outline |
| 9 | complement(7968..9401) | PHAGE_Burkho_KL3_NC_015266: gp47; D647_p55009; phage(gi327198092) | 4.72e-132 | Showinfo_outline |
| 10 | 9506..9772 | PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; D647_p55010; phage(gi557307573) | 5.16e-53 | Showinfo_outline |
Sequence
>193..912
KlebsiellapneumoniaesubsppneumoniaeMDKLLNKKIKVKQSNELTEAAYYLSLKAKRVLWLCLMQTYFTASVSEDDDEMAVLGDSTFKVKVADYEQIFQVSRNQAIKDVKEGVFELSRSAVIFYPKEGSFDCVARPWLTEAGSRSARGIWEIEFNHKLLRYIYGLTNQFTTYSLRDCGSLRNPRTIRLYESLAQFKSSGLWVTTHAWLNDRFLLPESQQKNLAELKRSFLDPALKQINEKTPLLAKYSIDDSGKFLFSIIDKQNPV
Sequence
>963..2039
KlebsiellapneumoniaesubsppneumoniaeMGEFPHSTGARQGGRIPTRHRRPARWADSHTAPAPGKVGGFPHGTGARQGGRIPTRLRRPERVGGFPHSTGARQGGRIPTRHRRPERVGGFPHSTGARQGGRISTRHRRPARWADSHTAPAPGKVGGFPHGSGARQGGRIPTRHRRPARWADSHTAPAPGKGGRISTQHRRPARWADSHTAPAPGKVGGFPHGSGARKGWADFHTAPAPGKVGGFPHGTGARKGWADFHTAPAPGKVGGFPHGTGARQGGGIPTRHRRPARWADSHTAPAPGKVGGFPHSTGARQGGRIPTQHRRPARWADSHTAPAPGKVGGFPHGTGTRQGGRIPTRHRRPARWADFHTAPAPGKVGGFPHGTGAR
Sequence
>complement(2461..3030)
KlebsiellapneumoniaesubsppneumoniaeMKIGYARKSTHLQDVAHQVDELTKAGCEQIYQDQTSRSGPKRDKKGAPELENCLKALREGDTLVVWALDRLGGSLGQVITLLDDLKKRGITFIAIKDRIDTNAPVIGEIYTHLMAIFSSFERNRNIERTRSGLAAARARGRVGGRKPSLSEEDVKQIRILLADPEMTVGAVAKRFNVSRMTIYRYTTKS
Sequence
>complement(3423..4436)
KlebsiellapneumoniaesubsppneumoniaeMKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
Sequence
>4583..5065
KlebsiellapneumoniaesubsppneumoniaeMRTLKVSLMAAKAKNGVIGCGPDIPWSAKGEQLLFKALTYNQWLLVGRKTFESMGALPNRKYAVVTRSGWTSNDDNVVVFQSIEEAMDRLAEFTGHVIVSGGGEIYRETLPMASTLHLSTIDIEPEGDVFFPSIPNTFEVVFEQHFTSNINYCYQIWKKG
Sequence
>5286..5552
KlebsiellapneumoniaesubsppneumoniaeMPVLTDEEVNTVRESCRQLGAIGRNLNQVARALNIEFRESDKLKQEAIEKLAERIDQHLDHVSELFDKTWSRWHDCHFQKTTAPVDWA
Sequence
>5665..6459
KlebsiellapneumoniaesubsppneumoniaeMLGGDWTDGTMTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
Sequence
>6720..7934
KlebsiellapneumoniaesubsppneumoniaeMLMSVFHNWLLEIACENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSRHFGKTRNEKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWVCASTDEEDVIETAIGEVIPGALISGPAGQILGGLSLQQAPVNHKYILPEDWHLRFPSGSEIIQYAASHYVKNSLDPDEQLLDRRRVEYDIFLLVEELHVLDIIRKGFGSVDEFIALANSVSNRRKSRAGKSLELHLEHLFIEHGLRHFATQAITEGNKKPDFLFPSAGAYHDTEFPVENLRMLAVKTTCKDRWRQILNEADKIHQVHLFTLQEGVSLAQYREMRESGVRLVVPSSLHKKYPEAVRAELMTLGAFIAELTGLYADIP
Sequence
>complement(7968..9401)
KlebsiellapneumoniaesubsppneumoniaeMSEFELLAQDLLEKAEAEEQLRQENDKKLLGQVLEIYDQKYVAELLRKVGKNEWSRETLNRWINGKCSPKTLTLAEEELLRKMLPEAPAHHPDYAFRFIDLFAGIGGIRKGFETIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIREVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECEAQGTLFFDVARIIRAKKPAIFVLENVKNLKSHDKGKTFKVIMDTLDELGYEVADAAEMGKNDPKVIDGKHFLPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQRPSFGELLEPVVDSKYILTPKLWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEILIDRGWDMATGETDFANEENQAHRPRRLTPRECARLMGFEKVDGRPFRIPVSDTQSYRQFGNSVVVPVFEAVAKLLEPYILKAVNADSCKVERI
Sequence
>9506..9772
KlebsiellapneumoniaesubsppneumoniaeMATLERLLGLLSAFEVVVWMTDGWPLYEPRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
Klebsiella pneumoniae subsp
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 59228 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: D647_p55001 (Region 1)
Locus: D647_p55001ORF Start: 193
ORF Stop: 912
Strand: Forward
Protein Sequence: MDKLLNKKIKVKQSNELTEAAYYLSLKAKRVLWLCLMQTYFTASVSEDDDEMAVLGDSTFKVKVADYEQIFQVSRNQAIKDVKEGVFELSRSAVIFYPKEGSFDCVARPWLTEAGSRSARGIWEIEFNHKLLRYIYGLTNQFTTYSLRDCGSLRNPRTIRLYESLAQFKSSGLWVTTHAWLNDRFLLPESQQKNLAELKRSFLDPALKQINEKTPLLAKYSIDDSGKFLFSIIDKQNPV
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: D647_p55001, gp37, phage(gi327198306), PHAGE_Burkho_KS14_NC_015273
Homolog/Ortholog E-Value: 2.98e-18
Locus 2: D647_p55002 (Region 1)
Locus: D647_p55002ORF Start: 963
ORF Stop: 2039
Strand: Forward
Protein Sequence: MGEFPHSTGARQGGRIPTRHRRPARWADSHTAPAPGKVGGFPHGTGARQGGRIPTRLRRPERVGGFPHSTGARQGGRIPTRHRRPERVGGFPHSTGARQGGRISTRHRRPARWADSHTAPAPGKVGGFPHGSGARQGGRIPTRHRRPARWADSHTAPAPGKGGRISTQHRRPARWADSHTAPAPGKVGGFPHGSGARKGWADFHTAPAPGKVGGFPHGTGARKGWADFHTAPAPGKVGGFPHGTGARQGGGIPTRHRRPARWADSHTAPAPGKVGGFPHSTGARQGGRIPTQHRRPARWADSHTAPAPGKVGGFPHGTGTRQGGRIPTRHRRPARWADFHTAPAPGKVGGFPHGTGAR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: D647_p55002, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 3: D647_p55003 (Region 1)
Locus: D647_p55003ORF Start: 2461
ORF Stop: 3030
Strand: Backward
Protein Sequence: MKIGYARKSTHLQDVAHQVDELTKAGCEQIYQDQTSRSGPKRDKKGAPELENCLKALREGDTLVVWALDRLGGSLGQVITLLDDLKKRGITFIAIKDRIDTNAPVIGEIYTHLMAIFSSFERNRNIERTRSGLAAARARGRVGGRKPSLSEEDVKQIRILLADPEMTVGAVAKRFNVSRMTIYRYTTKS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: D647_p55003, gp6, phage(gi327198275), PHAGE_Burkho_KS14_NC_015273
Homolog/Ortholog E-Value: 3.60e-47
Locus 4: D647_p55004 (Region 1)
Locus: D647_p55004ORF Start: 3423
ORF Stop: 4436
Strand: Backward
Protein Sequence: MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
Homolog/Ortholog Species: Integrase
Homolog/Ortholog Protein: D647_p55004, integrase, phage(gi479336499), PHAGE_Mycoba_Butters_NC_021061
Homolog/Ortholog E-Value: 2.05e-12
Locus 5: D647_p55005 (Region 1)
Locus: D647_p55005ORF Start: 4583
ORF Stop: 5065
Strand: Forward
Protein Sequence: MRTLKVSLMAAKAKNGVIGCGPDIPWSAKGEQLLFKALTYNQWLLVGRKTFESMGALPNRKYAVVTRSGWTSNDDNVVVFQSIEEAMDRLAEFTGHVIVSGGGEIYRETLPMASTLHLSTIDIEPEGDVFFPSIPNTFEVVFEQHFTSNINYCYQIWKKG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: D647_p55005, hypothetical protein, phage(gi100007), PHAGE_Bacill_Blue_NC_031056
Homolog/Ortholog E-Value: 1.15e-22
Locus 6: D647_p55006 (Region 1)
Locus: D647_p55006ORF Start: 5286
ORF Stop: 5552
Strand: Forward
Protein Sequence: MPVLTDEEVNTVRESCRQLGAIGRNLNQVARALNIEFRESDKLKQEAIEKLAERIDQHLDHVSELFDKTWSRWHDCHFQKTTAPVDWA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: D647_p55006, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 7: D647_p55007 (Region 1)
Locus: D647_p55007ORF Start: 5665
ORF Stop: 6459
Strand: Forward
Protein Sequence: MLGGDWTDGTMTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: D647_p55007, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 4.49e-55
Locus 8: D647_p55008 (Region 1)
Locus: D647_p55008ORF Start: 6720
ORF Stop: 7934
Strand: Forward
Protein Sequence: MLMSVFHNWLLEIACENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSRHFGKTRNEKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWVCASTDEEDVIETAIGEVIPGALISGPAGQILGGLSLQQAPVNHKYILPEDWHLRFPSGSEIIQYAASHYVKNSLDPDEQLLDRRRVEYDIFLLVEELHVLDIIRKGFGSVDEFIALANSVSNRRKSRAGKSLELHLEHLFIEHGLRHFATQAITEGNKKPDFLFPSAGAYHDTEFPVENLRMLAVKTTCKDRWRQILNEADKIHQVHLFTLQEGVSLAQYREMRESGVRLVVPSSLHKKYPEAVRAELMTLGAFIAELTGLYADIP
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: D647_p55008, gp45, phage(gi327198090), PHAGE_Burkho_KL3_NC_015266
Homolog/Ortholog E-Value: 1.14e-40
Locus 9: D647_p55009 (Region 1)
Locus: D647_p55009ORF Start: 7968
ORF Stop: 9401
Strand: Backward
Protein Sequence: MSEFELLAQDLLEKAEAEEQLRQENDKKLLGQVLEIYDQKYVAELLRKVGKNEWSRETLNRWINGKCSPKTLTLAEEELLRKMLPEAPAHHPDYAFRFIDLFAGIGGIRKGFETIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIREVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECEAQGTLFFDVARIIRAKKPAIFVLENVKNLKSHDKGKTFKVIMDTLDELGYEVADAAEMGKNDPKVIDGKHFLPQHRERIVLVGFRRDLNIHQGFTLRDISRFYPEQRPSFGELLEPVVDSKYILTPKLWEYLYNYAKKHAAKGNGFGFGLVNPENKESIARTLSARYHKDGSEILIDRGWDMATGETDFANEENQAHRPRRLTPRECARLMGFEKVDGRPFRIPVSDTQSYRQFGNSVVVPVFEAVAKLLEPYILKAVNADSCKVERI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: D647_p55009, gp47, phage(gi327198092), PHAGE_Burkho_KL3_NC_015266
Homolog/Ortholog E-Value: 4.72e-132
Locus 10: D647_p55010 (Region 1)
Locus: D647_p55010ORF Start: 9506
ORF Stop: 9772
Strand: Forward
Protein Sequence: MATLERLLGLLSAFEVVVWMTDGWPLYEPRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: D647_p55010, IS1 transposase B, phage(gi557307573), PHAGE_Shigel_SfIV_NC_022749
Homolog/Ortholog E-Value: 5.16e-53
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download