Submission Results
Sequence Name: Not Available
GenBank Accession Number: AB983198 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: AB983198.PHASTER.zip
gi|00000000|ref|AB983198.1| Staphylococcus aureus DNA, S. aureus pathogenicity island, SaPI1, 14577, gc%: 30.51%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 14.5Kb | intact | 95 | 20 | 1-14561 info_outline | PHAGE_Staphy_PT1028_NC_007045(14) | 30.52% | Show info_outline |
Region DNA
>1 1-14561 TTATTCCTGCTAAATAATATCAATTAAATAGAAATACCCTTTAATGACAACGATTAAGGG GTTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTA TCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACTTGTT CAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGTG TTGTACGGTGGTCGGAATGGCCTACACGATCCATAATAGCTTTAAGTGACACGCCTTGTT GAGAGAGTAATGATATGTGGCTATGTCTTAATATATGTGAAGAAACTTCTTTATCAATAC CAACATCTTTAGCTGCTTCCCTAAGGATTTTATTGAATCTTTCAGTCTGCATTGGGTTGC CTTTATGATTAGTAAACACAAAATTTCTATTTAGATATCCATCATTCCATTTTGAATCCT TTTTGTTCTCCAGTATTGCTTTCTTTAATATCTCGCAACTTCTGCTACTCAATCCAATTG TTCTATAACTAGACTCTGTTTTAGTGGTATCTTTTACACCGAATCCACCAGATTCATCGT GAAACCAATGGATTGTTCCGTTAATATTTAAACTCTTATTATCAAAGTCTATATCTTCAT TTTGAATGGCTAACATTTCACCAATACGCATACCATTTAAGGCTTGGAATTCTGTCATGA GTGCAACGAATAAATAAAACCGCTTATGGATACCTGAGTGCATCTTCTGAGCCTTCATAT TAATATCTTTGATGATAGATTGTATTTCATTTAATTCGAGGTACTTATTACGTTTAGCTT TCACTTCATCATAAGACTTAATTCTTTTATTTAACGTTATATCTTTTAAAAATTCTAAAT CTTGCAGTTTATAGATGCGTCTAGTGTATTCAAATACATTTTTGAATATGCTTAACGCAT CTTTGTTAACTTGATATACATAACCTTTACTATCCATTTCATCGAAAACTTGTTGCGCAT ATGAAAGTGTTATTTTATTGATTAAAATATCTTCATCTACAAATTTCTTCAAAGTGTTTA GCTTACTCAATTTAGTTTTAATAGTCGTTCTTTTTGACCCAGACGTTTTGATATAGTTCT GAAACCACTCATCACTTGCAGCATGAAAAGTTAGTGACTTAAGTGTAGTAGGTGTCTTAT CATTCAGTTTTGCTTCTATACGCTCATTTAAGAGCCTTTGAGCTTCTTTTTGTGATTGCT TACCATTCTTATTAAGAACCACACTAACACGTCGCCATTTGTTTGTGAGTGGGTCTTTGT ACTTCTCGTAATATCTATATTTAGTTTCTTTATTCTTATTTTTAAATTTTTCAAACCACA TTTTGCTTCTCCCTCCTCAAAATTGGCAAAAAATAATAAGGGTAGGCGGGCTACCCGAAA AATAATGATTATAATATAATTAATAGATTTATATCGTTTCTTTATAAGAAATATCGACAT CCAAATGGAATTTCTCAGACTCTACAGTTTTATTGTCTTCGTAAATTTTTAAAAAACTTT TTGGTAACCCATCATCTCCTGTGTAGAATAAATCATATGAAAAAGTGTCATTATTATTTA AATGGAACGTTACTTTACCAATATTAAATCCAGAATAAAATTTTGATTTATGACCATATT CTTCTCCTTTTTTAGTGCCGTTATGTCCATAAATGTTGTATTCTTCTTGAAGGTACTTTC TTAATTTGACATCAATCTCTTGAGCGGTAACTAATTTTTTGTTTGTCGAAACTTTATTGG TAGAAATAGTTTTGTGATTTCCATTGATCCATATATTTATAGGTATATTTCTAGATTTAT CTAGATATTCGTTAGTAGCTGTGACTCCACCATATATGTATTTAGTGTTACACTGGCCAT TATAACTAATACCAAAAACATCAAGTTTTTTTCCCTTGAAATTACTAAATTTATTAAAAT CTTTTGATTCTGAAATTAAATCATAAGATTCATTTGAAAATTGTAGTTGATTAGCTATAG GAGTATCATTGTCTTTTACATCTTTTAAATCTACAAAGTCTTTTTTTGTATAAAAATTCC TGAGATTATCAATTCCTATATCGCCTTGAGCGCTGGCATTATTAGAGACACCTAAAATTA TTATATTTATTAATAAGATGCTTATTAATTTTTTCATTGCCTTTTCTCCTTAAATTATAT TTATTCAGTTTTCTCATATGAAATCTCTACATCCAAATGAAAATTCTCTGCATCTATAGT TTTATTATCATTGTAAATTTTTAAAAAACTCTCTGCTTGACCAGTTCCGGTGTAAAACAA ATCGTATGTAAAAGAAGGTTCATTATTTAAATGGAAAGTAATTTTTCCTTTGTTAAACCC AGAATTAAATTTTGACTGATATCCATATTCCTGACCTTTTTTTGTTTTATTAAAACCATA TATATTGTATTCGTTTTGTAGGTATTTTCGTAACTTAATATCAATCTCTTGAGCAGTTAC CTCTTTTTTTTGAGTAGAAACTTTGTCTGTAGATATAGTATTTTGCTTACCATTGACCCA GAGATTAATAGGTATATTTCTAGGTTTATCTAAATTTTGATTCGCCAACGTAATTCCACC ATACATATATTTTGTATTACAAAGACCTGAGTAACTTATTCCAAAGATATCTACTTTATG ATCTTTTAATCTCTTCGCTTCATATTCATTATGAAACTGTGAATATAAAGTGTATTTTCC ATCAATATACTCTAATTGATGAGAAGTAGAAAAATTTCCAGAACTAACTCCTTGAAGCTT TTCAGGTTCATAATTAGCATAAAAGTTTCTAAGGTTGATTACCCCTACATCAGCATATGC TAGATTGTTTTTTATTAAAAATGTGAAGAAAAACAAGCTAACAGTGAGTATTCTAAATAT TTTATTCATTTTGATGGCTCCTTTTTTTATATTACAACGCCATATAGGCATTTTTAATCA CTCCTTGAGTATATTGGTTGAATCATTTTTACTATGTATCTCACAACCTTAAAATAAGAC GTAGGTGTGCTAGGACACGTAGGAATTTGACTGTTTTATATAATTTGTTTGAAAATTATG ACATTAATCTGTTTCATATAAAATTTTATATAAGGCGTCTCTTTTAGTTTTATCATCTTC CGAGTTTGTAAAGATATTAAAAAAATCATCCTTGTTTTTAATGTAATTGTATTTATTAAG TAAAAATACAACGATTAAATCTTTAATTGTCTTTAAATCGTTATCATTTAAAACGTTGTA ATAATACATATCTTTTTCTGTGAAATGCTTCTTATTTAAAAAATTATTATCTAAGAGAAA GCTTCTGTCAAAAAACACTTCATATTCATTTTGAGTAAGTAGCCAATTTAAGTCAAAATA AGGCTTTTCTATAACTTCTTTTTTTGTAGTCCCTTTAACCAATTTGATTTTATTACTAAA TATATCACTTTCAATTTTTGAGTTTTCGTTCTGTTTTTTTTTAATTGTAACATCATAATA TTCATTGAATTGTGTAATAAGTTCATTGGGGTCTCTATCGCTAATAGTACTATTAGATGA GTTTATAAACATTATGAGAATTTCATCTAAGTAACTATTATTGATTTCATAAAACGGGCT TTCACTGCCCATTTTATATTCGATATGTGTTTTAAAGCCTATTAGTAAATTGAAAATTGT TTCTAAAGAAGGGAAATTTCTTTTTCCGTTTTCTAATTTACTTATATATGTTTGCGAAAC GCCTGATAAAGTAGAGAGTTCTTTAACCGAAAGCTTCCAACTCACTCTTTCTTTTTTTAA TATTTCACCAAAAGTCATATAAATCACCTCTAATTATAATTATAAATAAGTTGTACTTTG AGTACAATATTTTTTGTGTTGACAATACAAAAAGAAGTGTGTAATATTTGTTTTGTACTC AATGTACAAAAAAGTACTTGTAGTACTAAAAGAAAGGAGTGCTTATCTTGAATAATAATT TAAGTTTGTTGATGGGGAAACATAGAGTTACGGCGTCAAAACTTAGCACGGTAACTGGTA TTTCCAGAACATCAATACATGGCTTGTATCACGAACGTACTGAAAATCCAGATACAAAAA CAGTTATGAAGTTATGTGAATATTTCAACATAACACCAAATGAATTTTTTGGAATTATTG AAAAAGAGGGGGTTAAATAAATGCCTAGAACAAAGTTACAAGATTTTCCATTAAAAGAAA ATACAGTTACAGAACCAAAGCAAGTTGTAGTAAATCCGTTGTTTGCGAAACCTAATGCAC TAGCTGGTATTTTTGGAATTTCATACAGTTCGGTCAATCGTATTTTAAAAGAGTGGGAAA AAGATCATAAAGGTATTGATGATTTATATTATTCACTATCATCATCAATGATTGTTATCA GTATTCCGCGATTCGAGGAGTACATGAAGGCACGTCATAAAAAATGGATGTAGGAAGCAA GGCAATGAAAATGTACTTAACTTATATCTGCTTAGTTTCATTGTTAACAATTTTATTACT AGCAATATCTAACATGTATGTTGCTTTTAGCGTTTATGCTTGGCTAATAACTTTAGGATG TAATTTAACAGGAGGATTAGAAAATGAATAATGAACAAAAAGAAGTAATAGAACACGTGG TTTATCAACTTGAGTTAAGTGTCATGAATAACTTGGAAAGTTATGAACACACAGAATATG TTAATGGTATTGAAGTGGTTTCAGAGATCAGTCGTGAAAAGCACTTAGAATTGATAATGA AATGGTGCGCACAAGAATTAAAGAATAATTTTCAATTAGAGAAAGGAGAATAAAAATGAA TTGGGAAATTAAAGATTTAATGTGTGACATTGAAGTGATAAAACAAAAAATTAATGATGT AGCTACCAAACATGCTTGGTTTGTTGAAGATAGATTTGTAAAAAATGAATTAGAAACAAA ACGGGAACATATTAATTTTTCTGCTAGCTATTTAGAACATCGTATACAAAATGAACATAC AGTTGAGTTATTACAAGTGTACTTAAAAGAGTTCGGTGAACTTATACAAAAGTTTCATGA AATAGAAAAAGCGTCACTTCAAGCCGACCAAAGCGAAAGTAACGCATAGCATTTAATAAA AATAACAGAGTAATTTAAAAATTACACATTTTTATTATAACATTTTTTACTCTGTGAATC ACTAGAGGTGCAAAAAATGAATGAAATTAAATTAGAATATGACACACATGTTTCAGTGGT ACATTATGAAAGTTTAGACTCACGTTCATTTAAGAGCTTTTCAAAACCTAAATGGAGTAA GTTAATTAATAAACTGTCTGTGCCTATAGAAGCAAATTATAAGTATGCACGTGGTGTTGC TGTTTACGGTGATATTAAAAATGGTGCAAATGATCATGGTGAAATTATCAAAAAGCATCG CAATGACGTTAATGTCGTATACAGAGATGTGATTGTACTTGATTACGATGAAATAAATGA TTTAAAGCAATTACATGAAGCAATCAGCTCAGCTTTAAGCAATGTTGCATGGTTTTGGCA CACATCGTTTAGCCATACAACTGAACAAGCTAGAATACGCCTTTATATCCCTCTAAATGA GCGAATAAGTGCAGATGATTATCGTAAATATACAAAAGTATTAGCAAATAAAATTGGTCA TAAAGTGGATGAAGGTTCATATCAGCCAAGTAGATGTTTTGCATTACCAGTTATTCAAAA AGGACACATATTTATTAAGCGAGTGAATGACTGTCCAATTATCGATGTTGATATGCTCGA ACAGTGGTCAAAGGAGTTTGAACAATCAAATGGTAGTCCTAATATCAAAGGGTACACACG ACGTGATAGTGCGTATTGGCGAGATATAGCTTTTGGTGTAAGTGAGGGAGAGCGCAATTC AACATTGGCTTCAATTACAGGTTATCTTTTGCGTAGGTATGTAGATCCAAACTTAGTTTA TGGGTTAGTGAGTGCGTGGGCAAGTGTATGCAAACCACCTATTAATCAAAGTGAAGTAAA CAATACTTTTAAAAGTATTTTGAAAAAAGATAGTAAAAGCAGTTAGAAATGGAGGTTTTT GTTTGGAAAATGTAACAAATGATGAAGTGTTTGAAATGATTGATAGTAGAACCGGTGTTT TAAATGCTAATGATTGGAAAAGTCAATTAAGGCGTTCTGCCACTACACAAGCATTGAAAA AAACGACTACAAATGCTGAAATCATATTGTGTAATGATGAGAGTTTAAAAGGGCTAGTAC AATATGACGCTTTTGAAAAAGTAACCAAGCTGAAACGTCTACCGTATTGGAGGTCAAAAG GGGATGCGAATTATTATTGGGCTGATATAGATACCACACATGTGATTTCACATATTGATA AATTGTATAATGTGCAGTTTAGCCGCGATCTTATTGATACTGTAATTGAAAAGGAAGCAT ATCAAAATAGATTCCACCCTATTAAATCGATGATTGAATCTAAATCATGGGATGGAATCA AAAGAATTGAAACGCTCTTCATTGATTATTTAGGTGCTGAAGATAATCACTACAATCGAG AAGTTACAAAGAAATGGATGATGGGTGCAGTTGCTAGAATCTATCAGCCAGGTATTAAAT ATGATTCCATGATTATTTTATATGGTGGTCAAGGTGTTGGGAAATCTACGGCAGTGAGTA AATTGGGAGGTCATTGGTATAACCAAAGTATTAAAACGTTTAAAGGTGATGAGGTCTATA AGAAATTGCAGGGTTCTTGGATATGTGAAATTGAAGAACTGTCGGCATTTCAAAAGTCTA CTATTGAAGATATTAAGGGGTTTATAAGTGCTATTGTAGATATTTATAGAGCTTCGTATG GTAAACGAACAGAGCGTCATCCTAGACAGTGTGTGTTTGTAGGGACAACCAATAACTATG AGTTTTTAAAAGACCAAACAGGCAATCGTCGTTTTTTCCCTATTACGACAGATAAAAATA AAGCAACTAAAAGCCCATTTGACGATCTAACACCAGATGTTGTTCAACAAATGTTTGCCG AAGCTAAAGTATATTTTGATGAGAATCCGACGGATAAAGCATTGTTATTAGATAAAGAAG CGAGTGAAATGGCTTTAAAAGTCCAAGAAGCTCATTCTGAAAAAGATGCTTTAGTTGGAG AAATAGAAGAATTTCTTGAACGTCCTATTCCGTCAGACTATTGGTATAGAACGTTAGAAG AAAAAAGAGTGTCTGCGCATGATGTTATAGACCAAGACTATATTAAATTATATGGTGATG GTAAATTGATTGAATTACCGAATACAAAACCAGGTGCTTATGTATGGCGTGACAAGGTAT GTAGCATGGAAATTTGGAAAGTGATGATGAAACGAGATGACCAACCACAACAACACCATT TAAGAAAAATTGATAAAGCGTTAAGAAATACAAATTATTGTGGCACTGTGAAAAAGCAAA CGCGATATGGTGAAGGTATTGGTAAGCAATATGGCTTTAGTGTAGATTTAGCTTCTTATT ATAAGAATCTTAAAGTTTAAACATCTTATTTTTAGGACAGTAAGACACTTATAAGACAAG TTTAAGACACCCGCAATCCCTTGTGGCAGTATATGCCACGCTATAAGTGTCTTGGTGTCT TGATGGTTTTTAGGGTAAAGTTTTACAGAAATTATTTTACACAATATACAAAATATATAA ATGTAGGTCGTAAACAGTGAGACAGTGAGACAGATTAAGTGAAGCCCTTGAGGGAGTAAG CGTAAAAAGAAATTCATAAGTGTCTTGAATTGCAATTCGAATAAGACAGTGGGACACCTA TCAAAAATTAGGAGGAAGAAAATGAATAAAAATCAATTAAAGTCAGAAATTTTAGAATAT ATAAAGGCGCATGCTGGTACATCATTTGTAGAAATAGAACGTGTATTTGAAGAAAATAAC TTTGATTATAAAGGTGACGGCGCATATACAAGTGGTCAACATCCTAATGTTGTGTTTTGG GTTGGGTGGAATCAAGAAGCGTTTGATGTTATCGCTGAACTTAAAAAAGATGGACATATT GAGATGGATATTTGTGAGCCAATTGTTTATATGGTTGATGGTAAAGGTTTGGATTTGCCT ATTGTAAGGTCGAAAAACATTAAAACAGATCATTGGCTACCTGTCACGTTTACTATTAGT AAGAAAGAAACGGAGTGTGTCTAATATGAATGACAAAGAGAAAATTTATAATCAACTTCA TCATGATGCACCAATTCAAATTATACCAGCACCCGAAAATTTATTTGTCGAATATATAGA AGCTGATGAAGTATGGTATTCACCAGTTGTATGTATGGCTTTAAGTAAAGCGCATAATAT TAATTTTTATGACAGTGATGATGTGGGGTGCATTGATAAAGCAGCCACATGTAGCATTAA AAAATTTAATCCTGAGACAGGTGAGTTTGAACAATTCAGCAAAATGGCTCAAAAGGAGGT AACACAATGAACATAGAAACTATCGTAAATCAATTTGAAACACGAGCAGGCACGTTACTA AGGTACTACACTGGATTATTAGAACATAGTAAAGTACAACCGTATTGCTTTAAGTTATAC AATGATCCGTTTGATATGGTTTATGTGATGATGAACGGGAAGTTATTCGGTCATGTATAT ATTAAAGATTGTAAAGTAAGGCAATCATTTGAATTAGCGTCACCTAAGCACACAGAGGGG CTTATAAGAAGTATAGAAGGTCATTATGTAGGTTATGAATTACATGACGGTAAACAGCTT TCTATTAGTGATGTGATGGCCAGTCAATTATTTGAAGATGAGTATTTTATGTATGGATTA CAAACATATGCAGAATCAAATAATAGTGATGTGTTTGAGTACCTAGAAAATGGATTTGAT ACCGATACACTTGAGGGCATTCAATCGAGTAATACTGATGTGATAGCGAATATTGAAATG TTGTATCAGTTAGCTACGGGAATCAATGAACCAGCACCAGAGTTAGTTGAGGGATTAAAA TTAGTAACTGAGTTTGTACAAGATGAGAATGCGACACAAGAGGATTACAAGGCTTTAGAA CGTAAATTGAATGATCTAAAAGCGTCTTACTATAGCTTGAGTAAATAATGTTATGAGGGG TCACATGTAGTGTGTGGCTCCTAATAAAATACTATGATTTTATACGAGGTATAGCAGTTT AAAATGGTAAGGTTTTCGGAAGGTGTTGGCTTTTAAAATCGGAAGGTATACAGTCTTTGA GAATTGAAAAAATGGCAAGATTTGTGCAAGGTGTGCGAACTTTGTTAACGCTAATACAAG CTAAAGTTTGTGTTTTTGGCATAGGCCTAAAAGTTAAGTTTGTTCGCTGTTTGTTCGTAT TATTTTACCGAACTTAAGTTCTATATTAGGTTAATGTGAAAAGCCTAACGTTAAGTTTAT AACATGATTTTATAAGTGTTATATATGATAAGCTAAACAATTGATAAAACGCGCTATAAA GCGAACGTAAGTTTGTTTTGGACCTGTAAAAATGGTATAATTTAGGTATGAAATAATTAA AAGAAAGAGGTGTAGAAATGCAAAGTATCGCAGAAAAAGAGACGTATCATTTACCCACCG AACACCTGCAAGTTTTCAATGTGATAAAAAATACGTCCAATAAGTATATTACTAAAACTA AAATCTTAAATCAATTGGGATATGAATATAATTCAAGCAATGAACGATGGTTACGAAGAG TAATCAATTCATTAGTATATCATTATGGCTATCCTATCGGATGCAGTTATAAACCTAGTG AACGTGGTTATTACATCTTACGACAGAACAAGAAAAGCAACAAGCGATGAGAAGTATTAA GAAATTAGCTGATGGCAGTATGAAACGCTATGAAGCTTTGAAACGAATTAAAGTGTAAAG GGGATAAAAATGAAAACTGAATCGTACTTTAAAGAATACAACCAATTTGTAATAGATCAA CAAAAGGCTATACAAGAATTGGAACAAGAGCGTAATGCATTGGAGAGTAAAATAAAGATA GATAAGTCCACATATAAACAGTTAATCATGGATGGACAAGATGATAAAGCAGATAACCTA TATCAAGCAACAGATGCTGATGAAAAGAAACTAAAAGCACTTAATAAACGCTTAGAGACA AAGAAAAGTGTGTCGAAAGAAGTTAAATATCAAAAGACAATTGAATTATTAAAACATCAA AGCGAGTTGTCATCATTATACGAATCAGAAAAGCAATCAGCTTTAGGTAAATTAAAAAAA GTAGCCGATGCATATAATGAGATCATTGATGAAATAGAAGATATTAATGATAGATATGAA GATGAGCATCAGCAATATGCGAGTATTTATAGTCAAGAACAATTATATGATGATAAAGAG GCTAGGGAAGCATTGAATGGCTACTTTAGAGAAAATATATTTACATCATATATTAATGGT AATGATTTGCCATACGAACACAATAACAAGTTGTTTTTAAAACGTTAAAAAGAAAGGGTA ATTAAATGGAAACAAAATACGAGTTAAATAATACTAAAAAGGTCGCAAATGCATTTGGTT TAAATGAAGAAGATACAAATCTATTAATAAATGCAGTTGATTTGGATATTAAAAACAATA TGCAGGAGATTTCAAGTGAGTTACAACAATCAGAACAGTCTAAGCAAAAGCAATATGGTA CAACGCTACAAAATTTAGCTAAGCAAAACAGGATTATTAAATAGCAATGATTGCCTATCC AATTCGGGTAGGCTCTGTTTATAGGGGTGAATAAATGAAACTGCTTAAAACGAAGAATTG TTTATATTATCGTAATGGCGACAATAAACTATCTGAGTATCAACTATTAACGCAATTTAA CCCAGCATTTATTAATAAAAAAATTAAGATGTGTGAATTCCAAATTGAAAGTATGTACCA TATGAGTGCGTCGACCACAACATGTGATGAAATAATGGGGGTCGTGTCTGTCTCATATCC GATTGAAAAATTAGTTATCAAAATTATTGAAACAAAAGCAGGGTTACAAAACTATAAAAA TAGATCTATAAATAATATGGCGTTGTTGAAAAAGGTACTAAATCATTATACAGAAAAAGA GCAGAAGCAAGTTGTAAAATATATGCGTTCAAATGGACGATATAAGCCCTACAACGTCAT TGAACGCTTACAGGGTGATTTGTATCAAGCAAGTATTAAACAACGTTCAGAACGTCAAAA ACAAAGAAATATAGCAATTGAAAATAGCAAGATTGCACGAGTAAATGCTTATCACCAATC TTCACATGTAAAAGTGGTGTAACAATGGATAAACAGCAAATAAAAGGCTTCGTTTGTGAT TATCATGAGCGAACTAGAATTGATGTATTAATAGATGATGATATAAATACTGATGAATTC TTTTCAATAGGTGATGAAAATTCTAATGAATGGATGACAGACGATAACATTGATGATCAT ATTGTAAAGAATCACTTAGAAATGATTGTTGACCGAGTAGCTAATGATAAAGAGTTTTAT ATTTTCGATTCTTTGATACAAGGACGTAGTTTTAAAGATATTAGCAATGTCTTAGAGTGT TCAGAACAATCTGTAAGATTATGGTATGAAACTTTATTAGATAAAATTGTGGAGGTGATA GAATGAGTGATTTAACAGCAAAACAAGCGCGTTTTGTGAATGAGTATATAAGAACACTTA ATGTAACACAAAGTGCCATAAAAGCAGGCTATAGCGCAAATAGCGCACATGTGACAGGGT GTAGGTTATTGAAGAAGCCACACATCAAGCAATATATACAAGAACAAAAAGATAAGATTA TAGATGAGAATGTATTAACCGCAAAAGAGTTACTACATGTGCTTACGAATGCGGCAGTCG GTGATGAAACAGAAACGAAAGAAGTTGTAGTCAAGCGTGGAGAATATAAAGAGAATCCAC AAAGTGGCAAAGTACAGCTAGTCTATAACGAACATGTTGAACTGATAGAGGTACCAATTA AGCCTAGTGATCGTTTAAAAGCTCGTGATATGTTGGGGAAATACTATAAGTTATTTACAG ATAAGCATGATATTAACGGCAATGTGCCTATATTCATTAACATTGGTGAATGGGACGGAG ACGATGAGGAATTAGATAAGGCAGTGAAAGATGTATCTAACGCTAATCCTAATCATACTG TGATTGTGGATGATATACCGTTAGAGGATTAATGAGGAATATTTACAGATAAATAAGATG TGAATCTTGTGGCACCAGAATTTGTTGATGATATAAAGAGATTTTAGAAATAAAGAAAAC AGCAAGTTTACTTGTCGAAATGTGATGCTTGAAGAATGATTACTTACTAATTTAGGTACA TATTATAAATCGGATTATCGATTCAATAAGGTTGTATTTAATAAATATTATATGTCAACA TTTTTAAATTAACTTGACAAATTTAAGTGAATGTATGGTAAAAAATGTTGAAATGTACTA TATTATAAATAAGGGTTGCATATAAGCAACACATCTTGGCGAATACACATAAAGATATTT ATTGTTTTTGTGTACGAATTATAGAAAGCATATACACGGTGACAGCGTAGGGACGCTGTC ATTTTTGTTTACAGAAAATGAATTAAGGAGGAAATATACTTTGATTTCTAATATTTCAAT TTTTGCAAAAGACGATAAAATGCAAGTTAGTGATAAGTTTAATCAAATAGTCGCTAAAAT GGATTATTTAAAAAACAAAAGGAATCATTTAGTTCATAGTTCCAAAATAGCAGAAGATGA AAAAAAGTTTTTAGAAACCTATATTAAAATAGAAAAATATAATGAAAGTAATATCTATTT AAAAGATGATAAAGTTAATATAAAGAGAAAGTTGAATCAAAATAATTTTGATTTTGAAAT GGTTAAAGACATTTTTGAAATCAGAGAAGAATTAGTTGATTTAGAGATAGAAGACTTAAG TATTAATAATATAGAAAGCTCATATATTTTTGAAAGCACTTTTTTTGCTGATGTATTAGA TGATGTGAATTTTGCAAAAAAACAAAATTTACAAAAAAAACGTAATTCGAAATCACTTGA AAGTGAAAATGTTTACAAAGATAAAAAGAAATTGTTGAATACAGACATAAAAACAAAATT TGATATGGTGACGTTATGATAAAAAAATAAAAGATATAATAAAATTGGAAGTTAATTATT TAAATAGGATTGATAAAGATAATACTGACAATGATGGGATAATATTAAAAGCAAATAACA ATGTAAATTTACCAAATGAAGATAATGAAGCTTATGTAGAAATTATTTTTACTATGAGAA GTGTAGAATCTAATTCATGGGAAAATGAGAAAAATAAAAAGAGAATTTTAGATGATGAAA ATGATCAAAATATAATTGGCAAATTAAGAGTTAATTATAAAATAATATGTGATTTCAGTA CAGAGAGGGAAGAAAAAATGAGAGATGCACTTTTAGAAATTATAGAACCTTATTTCAGAA AAGAAGTTGAAACTTTATTGTCAAATATGAAATTACCAAATTTTATTCTTCCTTACAGGT TTTGGGAAAATGAAGATAACTAATATAAGATTAAAAAGTGCAAATAAAAAAAGTGTTAAA AAACTTTACTTTCTTGAAGGTATAGATGCTATAGAAAAAATAGAGAATAATTACGAAAAA AAGTTTTTTTAGTCTCTATACTTGAGGGGATCAGACAATACTCAACACAAAATTATAAAA TAGAATGTGATTTTAAAAAATTTCATTATAGAATATTTCAGTATTATAGGATAATTAAGA GAAAATTAAAAGAGACAGTAAAAAATTTTGATGAAAAACAAGTACAGACGTTATCAAAAA TTTATAATAAATTATGCAATGTTAGTGATAAAAATAATTATATTGGACAAATTTTGGAGT ATACTTATATAAAATATATCAGAACTGAGGATTCTGTGTATAAAATTGGTCATGAACCAA TAGTATATCATAAACGTAAATCACTGCATGGAAAAGAATCTTATAGCAATAGATTATTAG ATTTTGTGACTATAGAGAATAGAAAGACGATAATTTTATGCGAATGCAAAGCGAACTTGC AAAGAGAGTTTCAAGGTTTAATCAAGCATTTTAATAAACCATTTAGACAGAAGTTACAGT TGATGAATCATTTAGAAGATAAGTTAAAGCAATGCCATTCTGGAAATGAAAAACCTAATA ACTTTGTAGAAATCAAAAAAGTATTAGTAACTGCATTTGCGCCGACTAATCAACAAAACT TACCTAGAAGATATCAACGAGAAATACCCATACTTACAATTAGCGATATGAAAAATATGG TGTTATAAATTTATTTGAAGAACAACTTTTAAGGGCATAAAAAAGGCATAATGTTGGTGA TAAGGGCAAGTGTATGGACTATAAAACACTTTGAAACGCTTATAAACACCTATATAACAG TGTTTTGAATGCTCATGAACTCCCTTGATAATACACTTAGT
Region Details
| Region | 1 |
| Region Length | 14.5Kb |
| Completeness(score) | intact(95) |
| Specific Keyword | tail |
| Region Position | 1-14561 |
| # tRNA | 0 |
| # Total Proteins | 20 |
| # Phage Hit Proteins | 17 |
| # Hypothetical Proteins | 3 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | yes |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Staphy_PT1028_NC_007045(14) PHAGE_Staphy_P630_NC_048635(2) PHAGE_Staphy_P1105_NC_048636(2) PHAGE_Coryne_SamW_NC_048069(1) PHAGE_Staphy_phiBU01_NC_026016(1) PHAGE_Staphy_Ipla35_NC_011612(1) PHAGE_Staphy_3A_NC_007053(1) PHAGE_Lactob_iA2_NC_028830(1) PHAGE_Staphy_phiJB_NC_028669(1) PHAGE_Staphy_phinm4_NC_028864(1) PHAGE_Brevib_Osiris_NC_028969(1) PHAGE_Staphy_SA1014ruMSSAST7_NC_048710(1) PHAGE_Staphy_vB_SpsS_QT1_NC_048192(1) PHAGE_Coryne_Adelaide_NC_048791(1) PHAGE_Staphy_phiNM3_NC_008617(1) PHAGE_Staphy_StB27_NC_019914(1) PHAGE_Staphy_2638A_NC_007051(1) PHAGE_Staphy_187_NC_007047(1) PHAGE_Staphy_phiN315_NC_004740(1) PHAGE_Bacill_Carmen17_NC_048698(1) PHAGE_Lactoc_lato_NC_004746(1) PHAGE_Staphy_85_NC_007050(1) PHAGE_Clostr_phiCD505_NC_028764(1) PHAGE_Staphy_3MRA_NC_028917(1) PHAGE_Staphy_phiSa119_NC_025460(1) PHAGE_Staphy_SA97_NC_029010(1) PHAGE_Staphy_phi2958PVL_NC_011344(1) PHAGE_Staphy_ROSA_NC_007058(1) PHAGE_Staphy_phiETA2_NC_008798(1) PHAGE_Staphy_phiMR25_NC_010808(1) PHAGE_Staphy_tp310_2_NC_009762(1) PHAGE_Clostr_phiCT453A_NC_028991(1) PHAGE_Staphy_37_NC_007055(1) PHAGE_Staphy_Ipla88_NC_011614(1) PHAGE_Staphy_StauST398_2_NC_021323(1) PHAGE_Brevib_Jimmer2_NC_041976(1) PHAGE_Staphy_Pvl108_NC_008689(1) PHAGE_Clostr_phiMMP02_NC_019421(1) |
| First Most Common Phage # | 13 |
| First Most Common Phage % | 70% |
| GC % | 30.52% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|AB983198.1| Staphylococcus aureus DNA, S. aureus pathogenicity island, SaPI1, 14577, gc%: 30.51%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 22 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 1..17 | attL | 0.0 | Showinfo_outline |
| 2 | complement(161..1381) | PHAGE_Staphy_PT1028_NC_007045: ORF002; -; phage(gi66395166) | 5.75e-126 | Showinfo_outline |
| 3 | complement(1469..2197) | PHAGE_Staphy_SA1014ruMSSAST7_NC_048710: hypothetical protein; -; phage(gi100059) | 1.50e-28 | Showinfo_outline |
| 4 | complement(2221..2991) | PHAGE_Staphy_phiNM3_NC_008617: enterotoxin type A precursor; -; phage(gi118725111) | 4.09e-33 | Showinfo_outline |
| 5 | complement(3124..3858) | PHAGE_Staphy_PT1028_NC_007045: ORF006; -; phage(gi66395170) | 1.60e-168 | Showinfo_outline |
| 6 | 3999..4220 | PHAGE_Staphy_PT1028_NC_007045: ORF020; -; phage(gi66395184) | 1.64e-47 | Showinfo_outline |
| 7 | 4221..4493 | PHAGE_Staphy_PT1028_NC_007045: ORF019; -; phage(gi66395183) | 9.49e-62 | Showinfo_outline |
| 8 | 4505..4651 | hypothetical protein; - | 0.0 | Showinfo_outline |
| 9 | 4644..4853 | PHAGE_Staphy_PT1028_NC_007045: ORF021; -; phage(gi66395185) | 2.41e-40 | Showinfo_outline |
| 10 | 4856..5149 | PHAGE_Staphy_PT1028_NC_007045: ORF016; -; phage(gi66395180) | 2.55e-15 | Showinfo_outline |
| 11 | 5237..6106 | PHAGE_Staphy_PT1028_NC_007045: ORF003; -; phage(gi66395167) | 3.36e-179 | Showinfo_outline |
| 12 | 6123..7580 | PHAGE_Staphy_vB_SpsS_QT1_NC_048192: minor tail protein; -; phage(gi100055) | 1.90e-90 | Showinfo_outline |
| 13 | 7882..8244 | PHAGE_Staphy_PT1028_NC_007045: ORF013; -; phage(gi66395177) | 1.46e-13 | Showinfo_outline |
| 14 | 8246..8530 | PHAGE_Staphy_StB27_NC_019914: hypothetical protein; -; phage(gi431809698) | 7.38e-13 | Showinfo_outline |
| 15 | 8527..9168 | PHAGE_Staphy_PT1028_NC_007045: ORF008; -; phage(gi66395172) | 3.49e-150 | Showinfo_outline |
| 16 | 9618..9890 | PHAGE_Staphy_PT1028_NC_007045: ORF015; -; phage(gi66395179) | 2.87e-53 | Showinfo_outline |
| 17 | 9970..10548 | hypothetical protein; - | 0.0 | Showinfo_outline |
| 18 | 10566..10784 | hypothetical protein; - | 0.0 | Showinfo_outline |
| 19 | 10835..11362 | PHAGE_Staphy_PT1028_NC_007045: ORF010; -; phage(gi66395174) | 1.22e-120 | Showinfo_outline |
| 20 | 11365..11706 | PHAGE_Staphy_PT1028_NC_007045: ORF014; -; phage(gi66395178) | 5.06e-74 | Showinfo_outline |
| 21 | 11703..12272 | PHAGE_Staphy_PT1028_NC_007045: ORF009; -; phage(gi66395173) | 7.29e-134 | Showinfo_outline |
| 22 | 14561..14577 | attR | 0.0 | Showinfo_outline |
Sequence
>1..17
TTATTCCTGCTAAATAA
Sequence
>complement(161..1381)
StaphylococcusaureusMWFEKFKNKNKETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Sequence
>complement(1469..2197)
StaphylococcusaureusMKKLISILLINIIILGVSNNASAQGDIGIDNLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNESYDLISESKDFNKFSNFKGKKLDVFGISYNGQCNTKYIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKLVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKETI
Sequence
>complement(2221..2991)
StaphylococcusaureusMPIWRCNIKKGAIKMNKIFRILTVSLFFFTFLIKNNLAYADVGVINLRNFYANYEPEKLQGVSSGNFSTSHQLEYIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIPINLWVNGKQNTISTDKVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSKFNSGFNKGKITFHLNNEPSFTYDLFYTGTGQAESFLKIYNDNKTIDAENFHLDVEISYEKTE
Sequence
>complement(3124..3858)
StaphylococcusaureusMTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNLLIGFKTHIEYKMGSESPFYEINNSYLDEILIMFINSSNSTISDRDPNELITQFNEYYDVTIKKKQNENSKIESDIFSNKIKLVKGTTKKEVIEKPYFDLNWLLTQNEYEVFFDRSFLLDNNFLNKKHFTEKDMYYYNVLNDNDLKTIKDLIVVFLLNKYNYIKNKDDFFNIFTNSEDDKTKRDALYKILYETD
Sequence
>3999..4220
StaphylococcusaureusMLILNNNLSLLMGKHRVTASKLSTVTGISRTSIHGLYHERTENPDTKTVMKLCEYFNITPNEFFGIIEKEGVK
Sequence
>4221..4493
StaphylococcusaureusMPRTKLQDFPLKENTVTEPKQVVVNPLFAKPNALAGIFGISYSSVNRILKEWEKDHKGIDDLYYSLSSSMIVISIPRFEEYMKARHKKWM
Sequence
>4505..4651
StaphylococcusaureusMKMYLTYICLVSLLTILLLAISNMYVAFSVYAWLITLGCNLTGGLENE
Sequence
>4644..4853
StaphylococcusaureusMNNEQKEVIEHVVYQLELSVMNNLESYEHTEYVNGIEVVSEISREKHLELIMKWCAQELKNNFQLEKGE
Sequence
>4856..5149
StaphylococcusaureusMNWEIKDLMCDIEVIKQKINDVATKHAWFVEDRFVKNELETKREHINFSASYLEHRIQNEHTVELLQVYLKEFGELIQKFHEIEKASLQADQSESNA
Sequence
>5237..6106
StaphylococcusaureusMNEIKLEYDTHVSVVHYESLDSRSFKSFSKPKWSKLINKLSVPIEANYKYARGVAVYGDIKNGANDHGEIIKKHRNDVNVVYRDVIVLDYDEINDLKQLHEAISSALSNVAWFWHTSFSHTTEQARIRLYIPLNERISADDYRKYTKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIIDVDMLEQWSKEFEQSNGSPNIKGYTRRDSAYWRDIAFGVSEGERNSTLASITGYLLRRYVDPNLVYGLVSAWASVCKPPINQSEVNNTFKSILKKDSKSS
Sequence
>6123..7580
StaphylococcusaureusMENVTNDEVFEMIDSRTGVLNANDWKSQLRRSATTQALKKTTTNAEIILCNDESLKGLVQYDAFEKVTKLKRLPYWRSKGDANYYWADIDTTHVISHIDKLYNVQFSRDLIDTVIEKEAYQNRFHPIKSMIESKSWDGIKRIETLFIDYLGAEDNHYNREVTKKWMMGAVARIYQPGIKYDSMIILYGGQGVGKSTAVSKLGGHWYNQSIKTFKGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQCVFVGTTNNYEFLKDQTGNRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAKVYFDENPTDKALLLDKEASEMALKVQEAHSEKDALVGEIEEFLERPIPSDYWYRTLEEKRVSAHDVIDQDYIKLYGDGKLIELPNTKPGAYVWRDKVCSMEIWKVMMKRDDQPQQHHLRKIDKALRNTNYCGTVKKQTRYGEGIGKQYGFSVDLASYYKNLKV
Sequence
>7882..8244
StaphylococcusaureusMNKNQLKSEILEYIKAHAGTSFVEIERVFEENNFDYKGDGAYTSGQHPNVVFWVGWNQEAFDVIAELKKDGHIEMDICEPIVYMVDGKGLDLPIVRSKNIKTDHWLPVTFTISKKETECV
Sequence
>8246..8530
StaphylococcusaureusMNDKEKIYNQLHHDAPIQIIPAPENLFVEYIEADEVWYSPVVCMALSKAHNINFYDSDDVGCIDKAATCSIKKFNPETGEFEQFSKMAQKEVTQ
Sequence
>8527..9168
StaphylococcusaureusMNIETIVNQFETRAGTLLRYYTGLLEHSKVQPYCFKLYNDPFDMVYVMMNGKLFGHVYIKDCKVRQSFELASPKHTEGLIRSIEGHYVGYELHDGKQLSISDVMASQLFEDEYFMYGLQTYAESNNSDVFEYLENGFDTDTLEGIQSSNTDVIANIEMLYQLATGINEPAPELVEGLKLVTEFVQDENATQEDYKALERKLNDLKASYYSLSK
Sequence
>9618..9890
StaphylococcusaureusMQSIAEKETYHLPTEHLQVFNVIKNTSNKYITKTKILNQLGYEYNSSNERWLRRVINSLVYHYGYPIGCSYKPSERGYYILRQNKKSNKR
Sequence
>9970..10548
StaphylococcusaureusMKTESYFKEYNQFVIDQQKAIQELEQERNALESKIKIDKSTYKQLIMDGQDDKADNLYQATDADEKKLKALNKRLETKKSVSKEVKYQKTIELLKHQSELSSLYESEKQSALGKLKKVADAYNEIIDEIEDINDRYEDEHQQYASIYSQEQLYDDKEAREALNGYFRENIFTSYINGNDLPYEHNNKLFLKR
Sequence
>10566..10784
StaphylococcusaureusMETKYELNNTKKVANAFGLNEEDTNLLINAVDLDIKNNMQEISSELQQSEQSKQKQYGTTLQNLAKQNRIIK
Sequence
>10835..11362
StaphylococcusaureusMKLLKTKNCLYYRNGDNKLSEYQLLTQFNPAFINKKIKMCEFQIESMYHMSASTTTCDEIMGVVSVSYPIEKLVIKIIETKAGLQNYKNRSINNMALLKKVLNHYTEKEQKQVVKYMRSNGRYKPYNVIERLQGDLYQASIKQRSERQKQRNIAIENSKIARVNAYHQSSHVKVV
Sequence
>11365..11706
StaphylococcusaureusMDKQQIKGFVCDYHERTRIDVLIDDDINTDEFFSIGDENSNEWMTDDNIDDHIVKNHLEMIVDRVANDKEFYIFDSLIQGRSFKDISNVLECSEQSVRLWYETLLDKIVEVIE
Sequence
>11703..12272
StaphylococcusaureusMSDLTAKQARFVNEYIRTLNVTQSAIKAGYSANSAHVTGCRLLKKPHIKQYIQEQKDKIIDENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPQSGKVQLVYNEHVELIEVPIKPSDRLKARDMLGKYYKLFTDKHDINGNVPIFINIGEWDGDDEELDKAVKDVSNANPNHTVIVDDIPLED
Sequence
>14561..14577
TTATTCCTGCTAAATAA
Staphylococcus aureus DNA, S. aureus pathogenicity island, SaPI1
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 14577 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: attL (Region 1)
Locus: attLORF Start: 1
ORF Stop: 17
Strand: Forward
Protein Sequence: TTATTCCTGCTAAATAA
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 2: PHAGE_Staphy_PT1028_NC_007045 ORF002 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF002ORF Start: 161
ORF Stop: 1381
Strand: Backward
Protein Sequence: MWFEKFKNKNKETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF002, -, phage(gi66395166), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 5.75e-126
Locus 3: PHAGE_Staphy_SA1014ruMSSAST7_NC_048710 hypothetical protein (Region 1)
Locus: PHAGE_Staphy_SA1014ruMSSAST7_NC_048710 hypothetical proteinORF Start: 1469
ORF Stop: 2197
Strand: Backward
Protein Sequence: MKKLISILLINIIILGVSNNASAQGDIGIDNLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNESYDLISESKDFNKFSNFKGKKLDVFGISYNGQCNTKYIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKLVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKETI
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PHAGE_Staphy_SA1014ruMSSAST7_NC_048710 hypothetical protein, -, phage(gi100059), PHAGE_Staphy_SA1014ruMSSAST7_NC_048710
Homolog/Ortholog E-Value: 1.50e-28
Locus 4: PHAGE_Staphy_phiNM3_NC_008617 enterotoxin type A precursor (Region 1)
Locus: PHAGE_Staphy_phiNM3_NC_008617 enterotoxin type A precursorORF Start: 2221
ORF Stop: 2991
Strand: Backward
Protein Sequence: MPIWRCNIKKGAIKMNKIFRILTVSLFFFTFLIKNNLAYADVGVINLRNFYANYEPEKLQGVSSGNFSTSHQLEYIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIPINLWVNGKQNTISTDKVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSKFNSGFNKGKITFHLNNEPSFTYDLFYTGTGQAESFLKIYNDNKTIDAENFHLDVEISYEKTE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_phiNM3_NC_008617 enterotoxin type A precursor, -, phage(gi118725111), PHAGE_Staphy_phiNM3_NC_008617
Homolog/Ortholog E-Value: 4.09e-33
Locus 5: PHAGE_Staphy_PT1028_NC_007045 ORF006 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF006ORF Start: 3124
ORF Stop: 3858
Strand: Backward
Protein Sequence: MTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNLLIGFKTHIEYKMGSESPFYEINNSYLDEILIMFINSSNSTISDRDPNELITQFNEYYDVTIKKKQNENSKIESDIFSNKIKLVKGTTKKEVIEKPYFDLNWLLTQNEYEVFFDRSFLLDNNFLNKKHFTEKDMYYYNVLNDNDLKTIKDLIVVFLLNKYNYIKNKDDFFNIFTNSEDDKTKRDALYKILYETD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF006, -, phage(gi66395170), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 1.60e-168
Locus 6: PHAGE_Staphy_PT1028_NC_007045 ORF020 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF020ORF Start: 3999
ORF Stop: 4220
Strand: Forward
Protein Sequence: MLILNNNLSLLMGKHRVTASKLSTVTGISRTSIHGLYHERTENPDTKTVMKLCEYFNITPNEFFGIIEKEGVK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF020, -, phage(gi66395184), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 1.64e-47
Locus 7: PHAGE_Staphy_PT1028_NC_007045 ORF019 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF019ORF Start: 4221
ORF Stop: 4493
Strand: Forward
Protein Sequence: MPRTKLQDFPLKENTVTEPKQVVVNPLFAKPNALAGIFGISYSSVNRILKEWEKDHKGIDDLYYSLSSSMIVISIPRFEEYMKARHKKWM
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF019, -, phage(gi66395183), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 9.49e-62
Locus 8: (Region 1)
Locus: ORF Start: 4505
ORF Stop: 4651
Strand: Forward
Protein Sequence: MKMYLTYICLVSLLTILLLAISNMYVAFSVYAWLITLGCNLTGGLENE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: , hypothetical protein, -
Homolog/Ortholog E-Value: N/A
Locus 9: PHAGE_Staphy_PT1028_NC_007045 ORF021 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF021ORF Start: 4644
ORF Stop: 4853
Strand: Forward
Protein Sequence: MNNEQKEVIEHVVYQLELSVMNNLESYEHTEYVNGIEVVSEISREKHLELIMKWCAQELKNNFQLEKGE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF021, -, phage(gi66395185), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 2.41e-40
Locus 10: PHAGE_Staphy_PT1028_NC_007045 ORF016 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF016ORF Start: 4856
ORF Stop: 5149
Strand: Forward
Protein Sequence: MNWEIKDLMCDIEVIKQKINDVATKHAWFVEDRFVKNELETKREHINFSASYLEHRIQNEHTVELLQVYLKEFGELIQKFHEIEKASLQADQSESNA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF016, -, phage(gi66395180), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 2.55e-15
Locus 11: PHAGE_Staphy_PT1028_NC_007045 ORF003 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF003ORF Start: 5237
ORF Stop: 6106
Strand: Forward
Protein Sequence: MNEIKLEYDTHVSVVHYESLDSRSFKSFSKPKWSKLINKLSVPIEANYKYARGVAVYGDIKNGANDHGEIIKKHRNDVNVVYRDVIVLDYDEINDLKQLHEAISSALSNVAWFWHTSFSHTTEQARIRLYIPLNERISADDYRKYTKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIIDVDMLEQWSKEFEQSNGSPNIKGYTRRDSAYWRDIAFGVSEGERNSTLASITGYLLRRYVDPNLVYGLVSAWASVCKPPINQSEVNNTFKSILKKDSKSS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF003, -, phage(gi66395167), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 3.36e-179
Locus 12: PHAGE_Staphy_vB_SpsS_QT1_NC_048192 minor tail protein (Region 1)
Locus: PHAGE_Staphy_vB_SpsS_QT1_NC_048192 minor tail proteinORF Start: 6123
ORF Stop: 7580
Strand: Forward
Protein Sequence: MENVTNDEVFEMIDSRTGVLNANDWKSQLRRSATTQALKKTTTNAEIILCNDESLKGLVQYDAFEKVTKLKRLPYWRSKGDANYYWADIDTTHVISHIDKLYNVQFSRDLIDTVIEKEAYQNRFHPIKSMIESKSWDGIKRIETLFIDYLGAEDNHYNREVTKKWMMGAVARIYQPGIKYDSMIILYGGQGVGKSTAVSKLGGHWYNQSIKTFKGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQCVFVGTTNNYEFLKDQTGNRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAKVYFDENPTDKALLLDKEASEMALKVQEAHSEKDALVGEIEEFLERPIPSDYWYRTLEEKRVSAHDVIDQDYIKLYGDGKLIELPNTKPGAYVWRDKVCSMEIWKVMMKRDDQPQQHHLRKIDKALRNTNYCGTVKKQTRYGEGIGKQYGFSVDLASYYKNLKV
Homolog/Ortholog Species: Tail protein
Homolog/Ortholog Protein: PHAGE_Staphy_vB_SpsS_QT1_NC_048192 minor tail protein, -, phage(gi100055), PHAGE_Staphy_vB_SpsS_QT1_NC_048192
Homolog/Ortholog E-Value: 1.90e-90
Locus 13: PHAGE_Staphy_PT1028_NC_007045 ORF013 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF013ORF Start: 7882
ORF Stop: 8244
Strand: Forward
Protein Sequence: MNKNQLKSEILEYIKAHAGTSFVEIERVFEENNFDYKGDGAYTSGQHPNVVFWVGWNQEAFDVIAELKKDGHIEMDICEPIVYMVDGKGLDLPIVRSKNIKTDHWLPVTFTISKKETECV
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF013, -, phage(gi66395177), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 1.46e-13
Locus 14: PHAGE_Staphy_StB27_NC_019914 hypothetical protein (Region 1)
Locus: PHAGE_Staphy_StB27_NC_019914 hypothetical proteinORF Start: 8246
ORF Stop: 8530
Strand: Forward
Protein Sequence: MNDKEKIYNQLHHDAPIQIIPAPENLFVEYIEADEVWYSPVVCMALSKAHNINFYDSDDVGCIDKAATCSIKKFNPETGEFEQFSKMAQKEVTQ
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PHAGE_Staphy_StB27_NC_019914 hypothetical protein, -, phage(gi431809698), PHAGE_Staphy_StB27_NC_019914
Homolog/Ortholog E-Value: 7.38e-13
Locus 15: PHAGE_Staphy_PT1028_NC_007045 ORF008 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF008ORF Start: 8527
ORF Stop: 9168
Strand: Forward
Protein Sequence: MNIETIVNQFETRAGTLLRYYTGLLEHSKVQPYCFKLYNDPFDMVYVMMNGKLFGHVYIKDCKVRQSFELASPKHTEGLIRSIEGHYVGYELHDGKQLSISDVMASQLFEDEYFMYGLQTYAESNNSDVFEYLENGFDTDTLEGIQSSNTDVIANIEMLYQLATGINEPAPELVEGLKLVTEFVQDENATQEDYKALERKLNDLKASYYSLSK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF008, -, phage(gi66395172), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 3.49e-150
Locus 16: PHAGE_Staphy_PT1028_NC_007045 ORF015 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF015ORF Start: 9618
ORF Stop: 9890
Strand: Forward
Protein Sequence: MQSIAEKETYHLPTEHLQVFNVIKNTSNKYITKTKILNQLGYEYNSSNERWLRRVINSLVYHYGYPIGCSYKPSERGYYILRQNKKSNKR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF015, -, phage(gi66395179), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 2.87e-53
Locus 17: (Region 1)
Locus: ORF Start: 9970
ORF Stop: 10548
Strand: Forward
Protein Sequence: MKTESYFKEYNQFVIDQQKAIQELEQERNALESKIKIDKSTYKQLIMDGQDDKADNLYQATDADEKKLKALNKRLETKKSVSKEVKYQKTIELLKHQSELSSLYESEKQSALGKLKKVADAYNEIIDEIEDINDRYEDEHQQYASIYSQEQLYDDKEAREALNGYFRENIFTSYINGNDLPYEHNNKLFLKR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: , hypothetical protein, -
Homolog/Ortholog E-Value: N/A
Locus 18: (Region 1)
Locus: ORF Start: 10566
ORF Stop: 10784
Strand: Forward
Protein Sequence: METKYELNNTKKVANAFGLNEEDTNLLINAVDLDIKNNMQEISSELQQSEQSKQKQYGTTLQNLAKQNRIIK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: , hypothetical protein, -
Homolog/Ortholog E-Value: N/A
Locus 19: PHAGE_Staphy_PT1028_NC_007045 ORF010 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF010ORF Start: 10835
ORF Stop: 11362
Strand: Forward
Protein Sequence: MKLLKTKNCLYYRNGDNKLSEYQLLTQFNPAFINKKIKMCEFQIESMYHMSASTTTCDEIMGVVSVSYPIEKLVIKIIETKAGLQNYKNRSINNMALLKKVLNHYTEKEQKQVVKYMRSNGRYKPYNVIERLQGDLYQASIKQRSERQKQRNIAIENSKIARVNAYHQSSHVKVV
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF010, -, phage(gi66395174), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 1.22e-120
Locus 20: PHAGE_Staphy_PT1028_NC_007045 ORF014 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF014ORF Start: 11365
ORF Stop: 11706
Strand: Forward
Protein Sequence: MDKQQIKGFVCDYHERTRIDVLIDDDINTDEFFSIGDENSNEWMTDDNIDDHIVKNHLEMIVDRVANDKEFYIFDSLIQGRSFKDISNVLECSEQSVRLWYETLLDKIVEVIE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF014, -, phage(gi66395178), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 5.06e-74
Locus 21: PHAGE_Staphy_PT1028_NC_007045 ORF009 (Region 1)
Locus: PHAGE_Staphy_PT1028_NC_007045 ORF009ORF Start: 11703
ORF Stop: 12272
Strand: Forward
Protein Sequence: MSDLTAKQARFVNEYIRTLNVTQSAIKAGYSANSAHVTGCRLLKKPHIKQYIQEQKDKIIDENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPQSGKVQLVYNEHVELIEVPIKPSDRLKARDMLGKYYKLFTDKHDINGNVPIFINIGEWDGDDEELDKAVKDVSNANPNHTVIVDDIPLED
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Staphy_PT1028_NC_007045 ORF009, -, phage(gi66395173), PHAGE_Staphy_PT1028_NC_007045
Homolog/Ortholog E-Value: 7.29e-134
Locus 22: attR (Region 1)
Locus: attRORF Start: 14561
ORF Stop: 14577
Strand: Forward
Protein Sequence: TTATTCCTGCTAAATAA
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download