Submission Results
Sequence Name: Listeria monocytogenes EGD-e, complete genome segment 11/12.
GenBank Accession Number: AL591983.1 open_in_new
GenInfo (GI) Number: 16411809 open_in_new
Download Results: AL591983.1.PHASTER.zip
gi|00000000|ref|AL591983.1| Listeria monocytogenes EGD-e, complete genome segment 11/12. 324050, gc%: 38.66%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 21.7Kb | incomplete | 10 | 9 | 290-22086 info_outline | PHAGE_Lister_A118_NC_003216(8) | 36.91% | Show info_outline |
Region DNA
>1 290-22086 TTATCTTGTGACCTCCTCATAACCCTTTAGTTTCAGTTCTTCGATATAGTCCGTCATTTTCTCGCAACCT GTTTCAATTAAAGCTATCTTTTGTCTGAAAGCCGGGTTAGCTATCATTTTCGTTCTGTCGTCTATGAAAA TCTCGCTATTTCCAAAAATCGTTTGCTTACGAAAAATTCGCTCTGCCATTGTTGTAGCCTCCTAAATTAA AATTAGAATTAAAATCAAATTACATAAGTTTATTAACGCTAATGCAGCCGCTATTATGACTAAGATGCTG AATAATATTTGACCTTTCATAGTGTGCGCCTCGGTATAATAATTTCGCGTAGATGTCCATCTACAAGCTC TTTTGTGACTTCATACTTTTTATTAAATGTTTCAGCTCTTTTTTTGCGCTCAACTTCATCAATCTTTTTA AATCGCTCTTTTACAATGTTGTTTATTTCTGTGAAATTAATACTCTTCGACTCGTAACCTTCGTAACTAG CCGATACTAAAACTTCGCTCATTTTCCGCAACTCCTTACTAATCCAGATTTTTGATAATATAGATCGCGT TTGTTTAAAACTTGTTGTAAATCTATGTTGAAAGCTATCGCAATACTTGCATTCAGAGTTAAAGCAGATG CAACTACATCTGTTATTTCTGAAATAGCTTGTTTAGCTGCTTCTCGTTGTAACATGTCACCTTTTCTTAA ATTGAACGTCATCGTCTCTAAGCCGTTTTTTAGCGTGTTCATCGCTTCTTCAACTTCTAGTTCAAATCTG TTAGTTAAAGAAGCGTGATGGTTGTCTAAACCGTCAAAAAGCGGTGGTATCATTCCGTTGCTGAATTCAT GTGCAAACAAGTAAGTACTTCGCGGTTCGTTGTAACTATCAATTAGCTGTTCTGCTTGCTCTAGTGAAAC AGTACGTTTTCCTTTTATCTGATTACTTATTAACGCTGGCGTTACATAACTATCTATCGCTAGCTCTTTT TGCGTGCGAGTTTCTGCTAAAACTTGCATCGCGGCTGTTGCTGATGTTGATTTTTGAAACATAATATCTC AATCCTTTTTGTTTATTTTTTAGCGACTAATTAACAACTTATCGTTATATACTATTGTTAGTCGCTCCCC AGTGACTAAGTTGTCTGTATAAGCGTCGTTGTGGTAGGCGGCGCTTAAATTATGACTTGATTGTGTTCTT CTAATAACTTGTTTAATAGATATACTTGTCCTTTTCCTGTTACTTGTGGAGTATAAGTGGTTTTCATTAA GCCGTTTCTATCTGTATGAATATGTGTTTTTTGTTCAAACAATCCTAAGTTCATCGCCTTTTGCGACGGT TTGTTGTAATAAGCACCTTTACTTAGCAAATAACCGCTTCCTCTCAGCCATTCAAAAAGCCTGTTTTGTC CTATATCTAATCCTTTTTGTTTTAGAATAGTAGCTAAATCTTTTACTAAAATTGTGTTCTCACTCGTTTG CACAGCTTCCGCAAAAACTACTTTCGGCTTTTGTTCCTCAAGTTTTTTTAACACCTCTTGCTTTTCTTGT TGTTCCTCTATCCATTTTTTAGCTCTAGCGACTGGATCTTCTATCATGTATGAAAATGCGGGATATTCAG TTGCTAATTTCCTCGCTTGTTTTTCTACTTCAATGAAGTATTTTCTAATTGCTCGACCCATTTCGTTGTT TTGCACCATTGCTAATTCTTTAGCAGTATCTAAAGTCAAAAAATAATTTGTTGATGGTCGCCCATTGGTT TTACTCAAAGTTGAGTAAAAGTCTAAACCATTCTCATAACCATAATTTCCAATCATTCTATATATCCAAT CATTAAATCTTGTATTTACTAAAAGCTTTTCATGAAGCATCCGGGCATCAACAAATTTTTCGCCTTGTTC ATTTTCTAAAACTGGCAACATTTCATTTGCAATTACTTGTAAATTTGACATTTTGTTCTCCTTTCTGTTC GCCCTTTCACAGTGCTATAGTTTTTGTGAAGGGAGGTGGGTAAAATGGGAGTTAAAATTAAATTTGATTC AAAAAAATTAGAGAGACAAATTAAAGAACAAAGCCTAAAAATCGCAAAGCAAGATATTATTAAAAATGGA ACGGAAGGGAGCTGTCCCGAATGTTCGCATGTATTTACAGTTAAACCTGGAGTAAACACATGTCCCGATT GCGGGAATGAATTTACTGTAAAAATCAAGTAAATCACTTCACCTTAATTTCTAACGAGTTTATAGTGCTA GCCAAGTCTTCCACCAAAGATTTGGCTTCAATTAATCTCTTTTCTAACAAAGTGGCGTTTTCTATGGAAT CCTCTACTCCATTCAGCTCTACTTTCATTTCGATAATTTTTAGCTCTTGATCTTTTTCAAGTAAACTTAA AATATTTTTTATAACGCTGTATTTAACGAATGAGCCGCTCTCTATCGCATTACCATTTTCTAAAATTGTT TCTAGTTTAATAATTGCTTGTTTGATGTTATTCATTTTTCTTCCTCCTAAATTATGATTTTTAGTATTTT CCAGACCATATTAGTCTTTGCATTTCTTCGCTGATCGTGAATGGGTGATATTCCACTTGTACAACTGGTA ATGATCCTGCTTTTAAATCTAACTTGACCGCTGTAATTCCTTTTCTTAATTGTTTTCCATTGATTTCTAA TACTCCATAACAACAGTTTCTATCTCCTTGCATCTTAATATTTAATGATTTTAAGTTTTCTGGTGGTATG TCTTTGGTTTTAAAAACACAATCTTTCTGTTCACTTCTTTTGTTGCTCAGATATCTTCTGTTCATTTTCT AGCCTCCTATTTTCTTTTGCCTAAATCGCCGTTAGTTTTTTCCGATAATCTATTAACTAATGAATTAATT TCTGAATAAAGTTCCGGCAAAATACTTAAATCACTAAAATCTTCTCCGGTTATACTTAATTCAATGGTGA GTACTGACTCTTTTCTATTTCTCTTAGTTAGGAAAGAGTTTGTAAATGCAATTTTCCTCATTTTCTAGCC TCCTGTTTTTCATTTAAATAAAAATGACTCTTTTCGCGTACTTTATCATCAAAAAAAATAGTCCATTCGA AATCTAAAACTGATGCAATACGCATAGCATTTACAACAGAAGGATTTCTTCTCCCTTGTTCGATTGATGC GTAAGTTGTTCTTTCCACATCCGCTAATTCTGCTACATCTTGTTGAGTTAGGCCATTTTCTTCTCTTATT TTTTTCAACCAAATCCTCATAAATATCTCCTTTCTCTAATTGTGTCGTATTGCGTACTTTTATATTACTA CGCTTTTTGACACATGTCAATAAATTAATACTCTTTTTGACACATTTTATTTAATGCCAACAAACTACGC TTAATGTGTAGTATAATTTTATGAGAGGTGATAGCATGTTTGGAGACATATTAATGAAATTACGTAAAAA CAAAAATCTAACCCAAAGCGATATAGCCAAGATTCTTGGTGTAGCAAGAACAACCTATTCTTCATATGAA CAAAACAGAAGAATGCCTGACGCGGAAATACAAATTAAAATAGCTGACTATTTCGATGTCTCCTTAGATT ATTTGCATGGAAGAGGTAAAAATAATATTGCCGACACGATCGCAGCTCACATTGATTCAAATGCATCAGA AGAAGATATAAAAGAGATACTCGCTTATATAGAAGAAAAAAGAAAAGAACATGTAAATGAAGAAGAAATA AATATTACTGATGCGGCTTCAAAAGGTGATAAAGAGGTAAATGAATTTGTTGACGAAAATGAGGATTTTA AAGCAGTTGCAGCACGCATAATGAGCGACGCGGAAGCAGTAAAAGCTGTTAAATCATTCATTGAATTTTA CGAGCAACAAAAAAACAACTAGTTTAATAATATATTTATTCTTGAACTACTTGACTTGTAATTTATTTAC TTGTTATTACTATTGATTATTAACATTCTGTGAAAACGTGATATTTCTTATAAAAATTATGTATAATATA AGTGCAACGTTGCAATAAAAAAACAACGGGGTATAAATACATGAAAACTTTAGATGAACTGAACGTAAAA CATGATATAGTGATACTAGAACACGAATTTACTTCTTGTTCATTCACTTTAAAAAAAGAAATTTTCATAG TTATTGATAGTAGATTAAGTCGAAGCGAAAAATTGGAAGACATCGCAAGGCTTTTGAATAAAATATAACT ATGTAACCAGTTCGCGGCCGCGGGTTGGTACATATAAAAGGGAGAAAGCGGGATGAGCAAGTATAGTTAC CTACTAAAAAAATGGTGGTTTTGGATTCTTTTATTATTAATTATATTAAGTTTGTTTAATGGTATATGGG TTCTTTTATTTTTCGCTACTCTAGCGACTTTGACATTTGCTATAATAAAAGTTATTAAAAATGAAAATCG TCGAAAATATACGTTAATCATTATAGCGACAACAGTCTTGCTTCTTACTTTTTCTTTAATAAGAACAGTT CAACTTTATAATTATATTGTGGAGAACCCAGAGGAAAATGTAACAATAGATAACCAAAAAAAAGATACTA AAGAAGATGCCGAAACAGATGAAGTAGAAGAAACAGAAGAAACGGATCAAGCAGACGCTTCTGCGGCATA TACAGTCACCCAAGAAGGTATAGAGTCTTTTAATGAATCCATTAATCGATTAATTTCTGAATCAAATGGA ATACTTATAAAAGTTGTTCCATTCGAAAATGAATATGATATGTTAATTGCATATGTAACTCAAGACTTAA AATATCAAGATGAAACAATCAAACAAAAAAATGCTGATTATTTAGGGAATGAAATACAACAACGCGCTCT TGGTACTCTTTTTGGGGGAGATAGCAATCATAGGCCCATGGTTGAGCTAAGATATGAAGACGAGACAAAG ATGGCTGGAAGTAGTGCTTTTGATAAAACTAATATGAAGCTCACAGGAAAATAAAATATAAAGGGAGAAT GAATATGAAAAAAGGGATAGCTTTATTAGCGGGATTTATGTTAGCTTTTAGTATTTTTTTAACAGGATGT GGCGGAACAGATAATACAAGAAAAGAAAATCATTCTGATGGCAGTGCCGAAGTGAAAAATAAAAAAGATA ATAATACATCAGATGAATATGTAGAAGATGGTCTTTTATTGAAAGTGGGAGAATGGACTAAAGATAAAGA TTACGATACTAAAGTGACTCTTGAAAAGATTGCAACTCCAAAAATAAAAGTAGGTTTAGGCGACTTAAAT ATGTTAATTAAGGATGTAAAAATCTTTAAACGAGAGAATGTCAGTGACGCAGAAAAAGAGGAATTTAGCG GTGGAAAAGTCCCTGTCACAGATCCTTACTACACAATACAAGTTAAATATGATTTAGAAAACACTGGAAA AAATGTGCTAAATTTTAATGGAATTGATTATATCATCACAGACCAAAAACAACAAATTGATGTTATGACT GACAACATTGGTATAAATGGCGTCTTCACTGTACAACCAGATGTCATAGTTGAAGATGAATATGTTATTT GTATATTAAAAAAAGACAACGTGGATAAAATAAATAAAGTAACTATAAAAACATCACCAGTCTATAACAG TGAAACGTATGACGAAATTACTAAATCGATGACTATCAATATTGAATTTAAATAAAAGAGAGCCTCAGGG CTTTTCTTTTTACCGAAAAAAGAACGTATGTGCGAAAGGAGAACGGAAATGAAGGCAGCTATTTATATAC GCGTATCTACTCAAGAACAAATAGAGAATTACTCTATACAAGCTCAAACTGAAAAGCTAACAGCCTTGTG CCGCTCGAAGGACTGGGACGTATACGATATTTTCATTGACGGCGGATACAGCGGTTCAAACATGAATCGC CCTGCGCTAAATGAAATGCTAAGTAAATTACATGAAATTGATGCTGTAGTCGTATATCGATTAGACAGAC TATCCCGCTCACAAAGAGATACGATAACGCTTATTGAAGAATACTTCTTAAAAAACAATGTAGAATTTGT TAGTCTGTCTGAAACGCTTGATACTAGTTCACCCTTCGGTCGTGCAATGATTGGTATATTGTCCGTATTC GCTCAATTAGAGCGCGAAACTATACGAGATCGAATGGTGATGGGGAAAATTAAGCGTATTGAAGCAGGTC TTCCTTTAACGACCGCAAAAGGTAGAACGTTCGGCTATGATGTTATAGATACTAAATTGTATATTAATGA AGAAGAAGCAAAACAATTACAAATGATTTATGATATTTTTGAGGAAGAAAAAAGCATTACATCTTTACAG AAACGACTAAAAAAATTAGGGTTCAAAGTCAAATCATATAGTAGTTACAATAATTGGCTAACTAATGATT TATACTGTGGTTATGTATCTTATGCGGATAAAGTGCATACAAAAGGTGTTCATGAGCCTATTATTTCAGA GGAACAATTTTATAGAGTTCAAGAAATATTTTCGCGCATGGGTAAAAATCCAAATATGAATAGAGATTCA GCATCCTTGCTAAATAATTTGGTAGTGTGTAGTAAATGCGGATTAGGGTTTGTTCATCGGAGAAAAGATA CTGTTTCCCGCGGAAAGAAATATCATTATAGATATTATAGTTGCAAGACTTACAAACATACTCATGAACT AGAAAAATGTGGAAATAAAATTTGGAGAGCTGACAAACTCGAGGAATTAATTATTGATCGCGTGAATAAC TATAGTTTCGCTTCTAGGAATGTAGATAAAGAAGACGAATTAGATAACTTAAATGAAAAACTTAAAACAG AACACACAAAAAAGAAGCGGCTGTTTGATTTATATATCAGTGGTTCTTACGAAGTTTCAGAACTTGATGC TATGATGGCTGATATCGATGCTCAAATTAATTATTATGAAGCACAAATAGAAGCTAACGAAGAATTGAAG AAAAATAAAAAGATACAAGAAAATTTAGCTGATTTAGCAACAGTTGATTTTGACTCTTTAGAGTTCCGAG AAAAGCAACTTTATTTAAAATCACTAATTAATAAAATTTATATTGACGGTGAACAAGTTACTATTGAATG GCTCTAGTAGCTTGTTTATTTAGATTGTTTAGTTCCTCGTTTCCTCTCGTTGGACGCAAAGAGGGAACTA AACACTTAATTGGTGTTACCCATAAGCCACCCATTATCATTGACCCAGTCACTTCTACTTATGTATTTCC AACTGTAGCACCAAGTTCAACAGAATGCATTTGGATTTTCCCACAACATATTAAAGATTATCATGCAATT GGATTTAACCACACTTTAATAACATTTTCTAATATGGAAACCTTTGAGATTGATATGTCTTTAGCATCTT TTAATAATCAGATTGCCAGAACCTCCATGTTACATATGAAATTTTCTCAAAAAATGCGTATTATGGAGAG TAATTTCCCTTCAATGAATAGGTTTTTCCCACCAACCACTCTTGCTGCTGAACCTAGACGTTATTACAGC ACCATGCTTCCAAATAACGAAGAACCTAATGATCCTCAAGATCCCGAGCAATAAATTTAAAACTAAATAA AAGCCAGCTACGTAATAGTAGCTGGCTTTTCCTTAAAATCATTTTTTATTCTCAATCGCATCTGCAATTC GTTTTAACATTAATAACTCATCCTCTGAGTATGTATAAGGTAGTTCTAAATACCATTTCTCGAGTTCAGG ATTTCCAATTAAAGGAAAGGCGTTTACCGAATTCTTTTCTCGCAAACCAGCTACATCATCTAATAAGAAA TCGGTTGTTGTTCCAAGAATTTCTGCTAATTTAGCCAAAATAAAAATTGGCGGTCGGTGGTTATCATTTT CATACTTGCTTATTGTGGATGCAGTTGTCCCGATTTTCGCCGCCAGTTGTTTTTGTGTTAACCTATTTTT CTTTCGTAAATGAATTAATTTTTCTCCAAATTCCAATACGCCCACCTCACTTCACTTCCAGTATAGCAAT TTTTCGGAAAGAATTCGAGAAATTACTAAAAAGAAATCGCCTTTTAAGTTTCAAAAGACGATTTCCGTAT TTTATACAGTTGGTTTCTTACGTAGAACACCAATTAATCCTGCGCTGATTAATGTTCCAATAATAATTGC AATAATATAGAACCACGGTTGGGATACAAGGAAGATAACAAAAACTCCTCCGTGAGGTGCTAATACTTTA ATGTTTAAGAACATTACTATTGCACCTGTGATGGCACTTCCGGCAATAAAACTCGGAATCATTCGAAGTG GATCTGCGGCTGCAAATGGTATAGCTCCTTCAGTAATGAATGAAGCACCCAAAATAGAGTTAGTTAAGCC TGCATCACGTTCTTGAGCTGTAAATTTATTTCTAAAAATAAGAGTTGCTACAAATGTTGCTAGTGGTGGT ACCATACCAGCAGCCATTGTTGCTGCCATGATTGCACTACCGCCTGTTGCTACACTAGCTGCGAGTGTAC CCGTTGCAAATATATAAGCAGCTTTATTAATTGGTCCACCTAAATCCGCTGCCATCATTGCACCTAACAG TAATCCTAAAATAACTGCGTTCGTTCCGCTTAAACTATTCAAGAAGTCATTCAACCAAGTGTTCAATGCG CTCATTGGTACATTTAATAGCAACATTAAAAGTCCGACAATTAACACCGATAAAACTGGATAGAATAAAA CTACTTTGATACCGTCTAATGTTTTTGGTAACTTTTTAAGTGCTAGTTTAATTAATTCTACTGCATAACC TGCAAGGAAACCACCAACAAGTGCTCCAAGGAAGCCTGCACCACCAACAGATGCTACTCCACCTGCTACA AAACCTGCTACAAGTCCTGGTCTATCCGATATACTGTAGGCAATATATCCAGCGAATACTGGAAGCATGA AGCCGAATGCAACATCACCGATTTGTTTTAATAGTGCTGGGATTTCGTTATATGAACCAAGTTTTGCGAG TTGATCTTGAGGAACACCTAACATTTGATCGAGCATAAACGCGATGGCGATAGCGATACCTCCACCAATT ACAAACGGCAACATGTGAGAAACACCGCTCATTAAATGTTTATAAATTTGTTGACCGATAGAAAGTCCGT CTGCGCTCTCCGTAGCTTGACTACCTTCCTCTGCTTTATAAATTGGAGCATTGCCTGAAATTGCTTCTTT AATTAGCTCTTCTGGTTTATGAATTCCCGCTGCAACCGGTTTAGCAATTAAATGCTTCCCGTCAAAACGA GGCATATCTACTTGTACATCAGCTGCAATAATAACCCCATCAGCTTCTGCAATTTCTTTATCTGTTAAAC GGTTTTCAACGCCTCTAGAACCATTTGTCTCAACTTTGATTCGTACACCTAATTTATTAGCAGTTTCTTG TAATTTTTCTGCAGCCATATAAGTATGTGCAATTCCTGTTGGACATGCTGTAACTGCTACGACTGATTTA CCAGTATCATTGGTTGAGGTTGGAGCAACAACTGTTTCTTCTGAGTCTTCTTGTTCATTGTTGAATAAAT TGATTACTTCCTCTGGAGTTTTAGCATCTCTTAACGATTGAACAAATGCTGGATGAACCAATAGTCTAGA AAGCGCTGCTAAAGTTTCTAAATGAGTTGCATTAGCGCCATCTGGGGCAGCAATCATAAAGAATAAGTGT GCTGGCTGACCATCTAAAGCATCATAGTCCAATCCCTTCTCACTCTTAGCAAAAACAACAGTTGGTTCAT TTACTGCTTTTGTTTTCGCGTGAGGCATTGCAATTCCTTCACCTACACCAGTAGAACTCTGTGCTTCACG GTTCATTATAGCTTTTTTAAATAGCACCTCATCATTAATTTTCCCGTTGCTCTTTAACGAAGCAATCATT TCATCGATAGCAGCTTCTTTTGTCGTTGCCTGTAATGACATAATCATAACATCTTTGCTTAATAAATCAG TGATTCTCATTTTAGTTCCTCCCTGTTATTTTGGTTATCTTCACTTGCGGTAATAGTTCATCTATTAGTT CTTTTTGGGCTAAATCTGTTGAGAATGCAGTGGCTCCACCTGTTGCAACTCCTGCAGCAAACGCTTTAAC GGGATCTCTCGTTTTATCAAAAGTCCCAACAAAGCCTGCAATCATTGAGTCTCCAGCACCTACGGAATTT TTCAGTTCCCCTTTTAATGCATCGGCGAAGTAAACATCTTCTCCTGTAAATAGAAGTGCTCCGTCACCCG CCATGGATACGATTACATGTTGCGCGCCTAATTCTAAACATTTTTTCCCGTATGGGATAAGTTCTTCTAC GCTACCAAGTTTCACGCCAAATAGGTCTGCTAGTTCGTGGTGATTTGGTTTAATTAGAATCGGGCGATTT GGTAATGCATCTAGCAGTTCTTGACCAGTTGTATCAATCATAAATTCAGCTTTTTTTTCTTTGCAAATCT GAATTATTTTATTGTAAAAATCATTTCCAAGTGAAGGAGGCACACTACCAGATAAAATAACAATATCGTT AGCAGTTACTTTATCCATCACTTTCAAAAATTCATTAATTTCCTTCTCAGAAATAGCTGGCCCTAGACCA TTGATTTCTGTTTCTTCTCCGTGCTTTAGTTTGATATTAATACGAGTGTCATCTTTCACCGTTACAAAGC CAGTTTTCACACCTTCGTTTTGTAGCCAATCTTTGATAAAACTGCCTGTAAATCCACCTAAAAAACCTGT AGCGAGACTTGGTACATTCAATTGATTTAAAACTCTGCTGACATTAATTCCTTTGCCACCAGGCAATTTA TAATCTTGCTTCATACGATTAAGGCCGCCAAGGTTTAGTTGATCGATTTGTACAATATAATCAATTGATG GGTTTAAAGTAATTGTATAAATCATTTTTCTACCTCGATTATTTTAGTTTTTTGGATAAAGGATTCTTTT ACTGCAGAAGGAATATAGTCTGTTACAATAGTTGCTTCTTCTATTGAAAACATTTTTGAAAAATTAACTT CATTAAATTTAGTATGGTCAGCTACAACAAAAACGCGATCAGCACGTTCTTTTGCAGCACGTTTTACAAA TGCTTCTTCCATATCGGGTGTTGTATAGCCATGCTCCGGATGCATCGCATTAGTACCAATGAAAGCTTTA TCGAAATGGTAATTTTTAATATTATCTAAGGCAACTGCACCAATAATTGCTTTTGTATGCACTTTCATTT TGCCACCTAAAAGATAAGCATCAATATTTTGACGAACAAGCTCTTCAATATGGGTTAAACCATTTGTCAC TACTGTGATATTTCGATTTGCTAAATGAGTAATTAATTCTAATGTGGTGGATCCTGCATCTAAATAGATA CAATCATTTTCTTCCACTAGACTTGCACAATATGCAGCAATTACTTTTTTACTTTGAATGTTTTTGAATG ATTTCTCATTCATACTTGGTTCTTGGTTGTGAAGTTTTACAAGTTTCGCCCCGCCGTGTACACGTTGGAT TAATCCTTGTTCTTCTAATTCGATTAAATCGCGGCGAATGGTTGACTCTGAGGTAGCAAGACCTTCAACT AGTTCTTGTAATTTAATTACACCAAGTTTCTCAATACTCTCCATAATAAGTTGTTTACGCTCTGCATTTA ACATTATTACTCCTCCATCCAAAGTTAGTTTATCATCTTTTTCTTTCAAAATCAACCGTTTTCATTCAAA AACAATCACATGTTTTCAAATCCATTCATATTATAACATGTATATCGCCATAAACCTTCATAAATCTTCA TTTATCATTTTTCTTATACAGTTCTAATTTTTAGCAGTATACTTGGTTAGAAGATAATTTTTTTAGGAGG AGTTATTCATGCAAACAGAATTAACATTTGAACAATTAGAAAATTTTTCTCGAAAATGGCGTGAAAATCC AGATAAATTGGTATTTCAAGCTAGTATTATGAAAAATGGGATTAAAGCAGCAACTGAGAATCCTACATCA AAAGTTAGCATTCAACCTGTCTTTTCCCACGAAGTTGCTACAGATAAAGTTTCTAATCAACAACAAAGTG GAAGATGCTGGATGTTTGCAGCATTAAATACGTTTCGCCATAAATTAAACGGAACGCTTGGTTTGAAGGA TTTTGAGTTATCACAGAATTATACTAATTTTTGGGACAAACTTGAGAAAGCGAATTACTTTTTAGAGAAT ATTATTGAAACAGCAAGTGAGGATGAGGATAGCCGATTAGTTTCGTGGTTGCTTGATACACCACAACAAG ATGGTGGTCAGTGGGATATGTTAGTTTCAATTATTGAAAAATATGGAGTGGTTCCGAAGTCCGCTATGCC TGAAACATTTCAAAGTGGCAAGTCTGCTGATTTAAACCATCTTTTAAATGAAAGACTTCGTACAGATGCG GTTATTTTGAGAAAAGCTTTCACAGAAAAGAAAGATACTGCAGGTTTGAAAGAAGAAATGCTTGCTGAGA TTTATCAACTTTTGGTTATGACGCTTGGCGAGCCTCCTAAAGTATTTGATTTTGAGTATCGAAATAAAGA CAATGAATTTAAACAAGAGTTACAAATTACACCTAAAGATTTTTATGAACGCTATGTAGATATGGATTTG AAAAATTATATTCCACTTATTAATGCACCGACCAAAGATAAACCTTTTAATCAAGCTTTCACAGTGGATT ATTTAGGAAATATTGTGAATGGGACGCCTATTAAGTATTTGAATGTGGAAATGGATGTATTAAAAAAAGC CGCCACTGATCAAATCAAAGACGGGGAAACTGTTTGGTTTGGTTGTGATGTTGGTCAGCTTTCGGAAAAA ACTACTGGTATTATGGATACCGATATTTTCTTGCTTAATCAGACCTTTGGCTTTAAAACAGCAATGACAA AAGCAGAGCGTCTTGATTATAAACACAGTATGCTTACACATGCGATGGTTTTAACTGGAGTGAATGTTGC TAATGGAGAAGTAAATCGTTGGAAAGTGGAAAATAGCTGGGGAGAAAAAATTGGAAATAATGGGTATTTT GTTGCTAGTGATGCTTGGATGGATGAGTTTACATTCCAAGTAGTGGTGCATAAAAAATATCTATCTAAGG AATTGATTGAAGCTTTTAATCAAGAACCGATTGCGTTAAAACCATGGGATCCAATGGGTTCGCTAGCACT TTAAAACACAAATTCTGAAATGATTTTTATTCCGTTCATTTGAAAAAGGGCTGCTGCTACGCCGGTACCA TCTTTTATCTTCCCCGAGAAGGTACCGTCGTAAATAGCACAGCTACCACAAGAAGGGCTTTTTTCCTTCA TAATTATTTTTGTAATACCGAGATCTTGCATTTTGGCTAAAGTAAGTTTCGCTCCGTATTTATATTCTTC TGTCACATCTGTTCCTTTGCTATCAACCACTTTTGCATGACCTAGCCAGACATCTTTGCCATCGCCGCCT ATTATTTCTGCAGGGTTTCTTGGTGTGGGCAGTCCACCAGCTACTTCGGGGCAAAAAGGAATTGCTTCTC CGTTTTCCACCATTTGTTTTATTTTGGTTATTTCTTTATCTTTCCCATCATATCTACAGGCTATTCCAGC TAGACAAGCACTTACTGCAATCATTTATTTTCCCTCCTTTATTTTTTATTTTAACATAAAAAGCTGCCAC CACTTATAGGCGACAGCTCAGTATTTATTAGATGTTTTGGTATGCTACGGCGATTTGTGTACCGATTAAA GCATTGTGTTTTACAAGTTCGATGTTTGCTTCAAGGCTCTTACCATCTGTTAGTTCTTTTACTTTTCCAA GTAGGAATGGAGTAACGTCTTTTCCGTGGATATGGTTTTCTTCTGCTTCTTTAAGCGCTGTTTGGATTAC ATCGTTAATTACTTTTTCGTCCATAGCGAATTCTTCTGGGATTGGGTTAGTAATTACTGCGCCGCCTTCG ATTTGAAGGTCCCATTTCGCTTTAAGCGATTCTGCGATAACTTCCGGAGTGTCTGCACGCAATGTTAATT CTACATCACTTGAACGTGTGTAAAATGCTGGCAATACATCGGTTTGGTAACCAATAACTGGAACCCCTTT TGTTTCTAGGTATTCCATTGTTAAGTTTAGGTCTAGGATTGATTTTGCTCCGGCACAAACGACAGCAACA TTTGTTTTCGCTAATTCTTCTAAGTCAGCTGAAACGTCCATTGTTGTTTCGGCACCACGGTGAACACCAC CAATTCCGCCAGTTACGAAGATTCCAATTTCTGCGAGTTCAGCACAAATCATTGTAGCTGCTACAGTTGT TGCTCCAAGTTGTTTTGTTGCAATAAGGTAACCGATATCACGACGAGAAACTTTTGCTACATTGCTACTT TTAGCAAATAGTTCTAGTTCTTCATCAGAAAGACCGATTTTAATTTTTCCGTCGATTAAAGCGATTGTTG CTGGTACGGCACCGTTATCACGAATAATTTGTTCCACATCACGCGCCATTTCAACATTTTGCGGGTATGG CATACCGTGAGAGATAATAGTAGATTCTAGCGCAACAATTGCTTTTCCTTCTGCTTTTGCTTGTTTTACT TCTTCGGATAATGATAGATAATTTTTCATTTGAATTCCTCCAGGTCTTTTTGTAGTTGGGATGTCGATAA ATTTTGGCGAACGGTATACTCAGATTCCAGTGTTCGCGCAGCATTTACGCTTCCTGCTTTTAAAATTTCT TGCAATGTTTTTCCTTCTAACCATGCGTAGATAACCGCGGAGCAAAATGCATCTCCTGCTCCTGTCACGT CGACAATATCTTCAATCACAATCGCTGGTTCAAAAATAGTGCCTTCTGCTTTGTTTGCTGCTACTGCGCC TTTGCTACCATTTGTAACGATAACATTTTTCACGCCTAGGTCTAGCCATTTTTGTGCAGCTAAGCGCCAG TCCTCATCGTTTTCAATCGTCATATCTAGGTGCGTTTCAGATTCGTCTCGATTGCAAATTAGCCAAGTCA CGTGATCCAAGCGTTCTGGTAAATGAGACATTTTTGGCGAAGATACGGGAACGAGTACTAATGGTATTGA ATTGATTTCGGCAAAGCTGCCAAGATATTCTAGTGTTTCTTTCGGACAGTTTAAATCAGCAATGATTGCG CTCGCCTGACTCAGCAAGCCTTCATTTTTTGCGAGTACATCTGGAGTTAAGTGATCATATGCATCCATGT CCGCTAGTGCAACGAGTAAATCTCCATTGTTTTCGAGTACTGCTGTATAAGAACCAGTTGCGATGCTCGG AAATGCTGTGACATAATCTAAGTTCATATATGTATTACTAGCATTTTTGACAGCTTCCCAGTCGGAGTCT GTTCCACAAGCAGTGAGTAATATAACTTCTTTTCCAAGGCGTCCGAGGTTTTCGCCTACGTTTCTAGCAA CTCCGCCAGCACTTTGTGTTGAGCGCACTGGGTTTGATGTGGCTAGTTGGGCCTTGTCTTTAATATAAAA CTTCCGATCGACGTTCGCTCCACCTATACAAACAATTTGTTTTGCTTCATTTAAAATATAGGCTTTTCCT AAAATGCGACCCTTCTTAATAAGGCCGGAAATAAGGTTTGCGACTGTCGGTCTTGATAAATCAAGTATAT CAGCAAGTTCTTGTTGAGAAATGTAAGGATTTTTACGGATGGAATTGAAAATTATCTCTTCCTTTTCGTT CATTTTCGCTTTATTATTCTCCACGATATAATGCACCTCCATTCCAAACTTTTGTTTTATTTTCAAACAC ATGTTTATTATATATGTAAATGCTTTCTTTTGCAAATTAAAAAACGAAAATCCGCTTCTTTTTAGGAAGA AAATTTTCGTTTAGGTTTATTTATTTTGGAGGATAGCTAGTTCTGCTTCGGTTAATGGGCGGTATTCACC AAGTGCAAGTGACTCATCTAATTGTAAATTGCCCATCGAAATTCGTTTTAAATAGCTGACAGATTTTCCC CGAGCGGCAAACATTCTTTTTACTTGGTGGAATTTGCCTTCTTGGATAGTTACTTTTATTTCGTTTGGTG TAATAATTTCTAAGCGAGCCGGTTTGCAAGTGTAGCCATCATCGAGTTCAATTCCCGCTGCGAAAGCTTC TACATCCTCGGCCGTAACATCGCCATCAATTTTAGCATAGTATGTTTTATCTATATGCTTTTTAGGTGAG AGTAAATTGTGCGCGAGGGTGCCATCGTTCGTTATAATCAGCAAACCTTCTGTATCTTTGTCTAACCTGC CAACTGGGAACGGATCCGTAAGCGTGTCTTCTTGAGCGAGCAAATCGATGACGGTTTCTGACACATTATC CTCGGTTGCGCTCACAACATTTTGTGGTTTGTGGAGCATGAAATAGACGAATTCTTGGTAAACGACTGGG GTTCCGTGGACGGTTATTTGATCTTTGTCGGGATTTACTTGGGTTTTACTATCTTTCTGGATTGTGCCAT TGACGACAACTGCCCCTGATTTAAGCAGTGGTTTCACTTCTTTTCGACTCCCGAAACCTGTATGGGACAA TAATTTATCTAAGCGCATGGTTTAGCTCCTTTTTTCTTTTATTGTAACAAAAAAACGAAGCTTCCTCAAA GGCGCTCCGTTTTCTTTCTATTATTTAGTTTCGACGGCTTGTTTATTTTGAGGTATTGTTAAACCGAGAT TACCTCTTAGTGTTGTCGCTGGGTATTCGTTTCGGTACAAGCCGCGACTTTGTAAAAGTGGAATAACTTG TTCGACGAAAGTTTCAAATGTTCCGGGAATGTCGGATGCGATAATAAAGCCATCTGCGGCCTCATTTTGG AACCAAACTTCGATTAAATCGGCTACTTGTTCTTTTGTTCCGATGAAAGGCGTTTTTGGTGTTGCTGCTT CGGTCGCGACTTGGCGAAGGGTCAAATGACGCTCTTTAGCTTCTTTTTTGATTCGATCCGTTGTGCTTTG AAAAGCATTTTTGCCAATATCTCCAAGGTCTGGGAATGGAGCATCTAAATCAAATTGACTTAAATCATAG TCGTCGAAGTAACGTGCTAGGTAAGTTACCGCATTTTCGATTGGAATTAGGCTAGCAAATTCAGTATATT TGGCTTCTGCTTCTTCCAACGTATCCGCTACAATTGGGCTAATTCCTGGGAAAATTCGGACTTCATCTGC ATTTCTACCAGCTTTTTCAGCGCGGGATTTTACATCTCGATAGAATTCAACAGCTTCTTCCAACGAATCT GAATGAGTAAAAATGGCTTCTGCATTTTGAGCAGCGAAATCCCGTCCTGTACTAGATGCGCCGGCTTGGA AAACGACTGGCTCGCCTTGTTTGGAGCGCCCGATATTTAACGGCCCCTCGACTTGAAAATACTCGCCTTG ATGATTTAAGTGATGTAATTTTTCGGGGTTAAAGAATTCACCGGTTTCTTTATTATAAGTGAACGCATCC TCTTCCCAAGAATTCCAGAGTCCGCGAACCACTTTTAAATGTTCTGCCGCAATAGTGTAACGATCGCTGT GGGTTGGGAGATTTTTCTTGCTATGATTTCGCGCGGCACCTTCTTGCGGAGAAGTGACTAGATTCCAACC CGCTCGGCCGCTACTAATGTGATCAAGGGAAGATAGCTGTCTTGCAAGTGTAAATGGTTCTGTAAAAGAG GTCGAGAAAGTTCCGACAAGTCCGATGTTTTCCGTAGACTCAGCTAATGCCGATAAAATCGTAATTGGTT CAAAACGATTAAGAAAATGCGGAATCGATTTTTCGGAAATAAAAAGGCCGTCTGCAATAAATACAAAACT AAATAACCCTTGTTCGGCAATTTTGGCGCGCGTCTTATAAAAATCTAAATCCGTACTTGCTGCGGGGTTG ATGTCCGGATGTCGCCAACCGTCTGTTGTTCCGCCAACACCGTGAATAATTGCACCAAACTGAATTGTTT CTTTTCTAGTCATTTTACTTCCCCCTTTTCAAACAATGCTTTTTCCAAATGTTCCAATCCGATTTCTGTA ACAGCTTGGTAGGTCCCATTTTCAATGTTGCCAATTTCTACGACTGGTACGTGGCAGATGCCGTATTTGG CTTGGAGAACTTCTCGCAAATAATCATGGTCGGTGACGTCGATATCTTGAAAAACAATTTTTTGCTCGAT TAAAAAATCTTTGACATCTTTACAATAATGACACCCTTCTTTACTCCAAACGACGACATTAGCCATGGAC AACTTCCTCCTTTATCGATTCACTTAATAGTTGATAGGAATAACGTTTAATTTCAGCAGATTTGACTGGA GTTAAAACAACAAAATCTTGGATATTATATTCTTTTGAAAGGCGTTTAATCTCTACTCCGACTTCTTGTT TGGTTCCTGTTATCGCACCAATTCGTTGGGTAATAAACCGGTATGTTTGGTCGATATCTTTTACGTAGGC TTCGGCTTGTTCGCGCGATCCGACATTAACTCTACGTCCGTCTGCAAGCTCGACTTTGATTGACTCTCGC TCTGGAATATGTCGGTCTGCTGCGATTTTAGTCTCAGCTACTACAACAATTGGTGCTAGTTGAAAACTAG CTTTTGTGTTTATTTGGTACTGTTCAAATAGCTCGCGTGCTTCTTTTAAAACAGCTTCTTCTCCGTTAAT AAAATAAGCAAATACAAAGGAAATCCCTAGTTTGGCAGCTTGTTTCGCGCTCGATGCACTTCCTCCAAGC AAAAATATCTCTGGTTTGTTTTCTGGAAGTGGTTTTGCTGCAATAGTTGTATCTGAATGACGGGTGACAA AATCGACTAGTTCTTCCAATTTAGCATCAAATGTACGAGTAGGTTTAACGAAGTCTTTTTGAAGGGCATC GGTTGCTGGCTGAAATCCACCTGGCGCTTTTCCGACGCCAAGTGAAATCCGACCTGGCGCTAAGTTTTCA AGCACATGAAATTGTTCAGCAACTTTATATGGACTATAGTGTTGTAGCATTATTCCGCCAGACGCAAGCT TGATTGTGCTCGTTTTTGCAGCAATATACCCTAAAAGAACCTCCGGAGCTGCGCCAGCTATTTCGTCTGA ATTATGATGCTCGGCAACCCAGAAACGATGATAGCCGAGTTGTTCTGCGAGTTGCGCAAGTTCTACTGTA TTTCGCAAGGCTTCACTTGGTTGCTCGCCCGGATTAATAATACTTTGGTCCAAAATACTAAATCGAATCG TCATATGACACGCTCCTTTTTCACTTCTTTGATTTCATATAAATAATCCGCTGAAACTCGGTGTAAAAAG CGTTTTGTTCTTTCTTCTTTTGTATGATTAAACACTTCATCAGGAGTACCTTGTTCGACAATTAGTCCAC CATCCATAAAGACGACTTGATCTGCGACTCGTTTGGCGAACTCCATTTCATGCGTAACGACAATCATCGT CGCACCCGCACGCGCAATCTCCAGCATCACTTCCAATACTTCCCCTACAAGTTCGGGATCAAGTGCGGCG GTTGGTTCATCAAATAAAATGACGTCTGGATTAATTGCGAGTGCTCGTGCGATTCCAACGCGCTGTTTTT GTCCGCCGGAAAGTTGGGAAGGGTAGGCACTGAGTTTGTCCGCCAAACCGACTTTTGTGAGCTCCCGTTC CGCAATTTCGTGTGCAATTTTTTTCGGTATTTTCCTTGCTACCGTAAGACCCTCCATCACATTTTGGATA ACCGTTTTGTGAGAAAAGAGATTATATTGTTGAAAAACCATTGCTGTATTTTTCCGCAGTTGCAAAACTT CTTTTTTGGATGGTTTCTTGCAGTTAATTATTTGGTCATGCATTGAAATTTCGCCATTTTCAGGTCTTTC CAGTAAGTTTAGGCAACGTAAAAAGGTTGTTTTCCCTGAGCCACTTGGACCAAGTATTGTTACTACTTCA CCCTTTTTCACCGTTAAATCAATTCCTTTTAAAACTTTGTTTTCGCCAAAGCTTTTTTGAATATTTTTAA TTGTAATCATACTGTCCCTCCTCGATATTTAGCGATATTCTTTTCCAAAATGTAATTAATTGCTTCAATC AAAATAGTTAAAAACCAATAAATGAGTGCGGCACCGATAAATGCTTCGAGAAATGCGTAATTGTCTGATG CTACAATCGTTGCCATTCCAGTGATTTCTGGGACTGCGACGATGGCGGCAATGGATGTGGTATGTAGAAA TCCGATACACAAATTCGTGAAATTCGGTAAGGCAATCATGAAGGCCTGTGGTAACAATACTTTCCGAATC GCTTGACCATGCGTGTATCCCACCGAGTAAGCTGCTTCCATTTGTCCGATATCAACCGCAATAATACCGG AGCGCAAAATCTCGGTTAAGTATGCCCCCGCCGTGAAAGACAGTGCGATAATGACAAAAACAACGACCGG TATTTTATTTGCAGAAATGCCTAAGCCGAATGACTTGCTCAAAAAATCCACCAATAGGGGAATGCCTAAG TAAATCAGCATAATATGCAAAATTGCTGGGGTGCTTCGAAAAAAAGAAACGTAAAATTTAGCAATCGGTT CTAAAAAGCGAACGTGGTACATCCGAATAAGCGTCAGACCAATTGCGATAATGAAACCGAATAATATCGG AAAGAAGGTCATTGCAAGTGTTAACGGAATCGTTTTTAACATTGCCATTACAGCAGTTCCAATAAAAGGC ACATCTAGCGGCATCATTATCTCTCCTTTATAACTCGATATCGAAAATACTCGTGAATCTGGTGTTTTCT TTTTTAACTCGTTTTTCAATCCATTTGAAGGAATATTCCAGTAAGACGGCCGTCAAATAGTAAATGATTG ATAAAGAAATATAGACCTCTAAAGCGTGATTACTTAGTGTTATGAGCGTCTGACCTCTTCCTGACATATC CATTACACCAATCGAAAAAGCGAGCGATGTATCTTTCAAATAACCAATGACTAAATTGCCAAAATTCGGT AGAGCTTGATAGAGTGCTTGTGGCAAAATGATTCGTAAAAACGTTTGGCGACTACTCAGACCAATACTAT AAGCCGCCTCTGCTTGTCCGGCATCCACGCTATTCACCCCTGCGCGAATCACTTCCGCAATTGTCGCCGC ACTGCTTAATGCATAAGTCGCAATCGCAGCATACAGCGGATCCATTTGTGATAAGTCAATGCCAAATACG CTTGAAAGTGCCGGAATTCCGTAAAAAACAATGAATAATTGAACCATAATCGGCGTCCCACGAAAAAACG AAATATACACTCTGGCAAATTGATCTAAAATTGGAACCTTATAAATTCGTGGTAAAGACAGCAGTACTCC TAATATAAAACCAAAAATAAGCGAGAGTGCTAAAATATACAACGTTATGGGTAAATAACCAGCTAACGTC GGAATAAAATCTGCAATCATTTTTACATCGAACGCTTTATCCATTTTGATAGCACTCCCTCTCTTTTAAT ATTGTTCTTTTGAATAATCTGCGCCAAGCCATTTTTCACTTAATTTTTTAAGTGTTCCATCATCAATAAT AGATTGAAGCGCCTCATCTACCTTTTTGCTTAGTTTCGTTTCATCTTTTCCAAGCATGAAGTATACTTTC GCATTAGATAGAACATCGCCAACTACTTTTTCTTTGATAGCGCTTGTTTTATTTTGGAAATCTACCGCGA ATGGTGTAGAAATCGTTGCATCAGCGCGGCCAGTTTTCAGTTGGTTCGCTGTATCATTTGACCCTTGACC TTCATAAGCAATTTCAAAATTATTGCCTTGTTCTTCATTGATTTTTTTCAACACGAGTGCCCCATTCGAT GTTGCGCTTGTGATAACGCGTTTTCCA
Region Details
| Region | 1 |
| Region Length | 21.7Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 290-22086 |
| # tRNA | 0 |
| # Total Proteins | 9 |
| # Phage Hit Proteins | 8 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 88.8% |
| # Bacterial Proteins | 1 |
| Attachment Site | yes |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Lister_A118_NC_003216(8) PHAGE_Lister_vB_LmoS_293_NC_028929(8) PHAGE_Lister_LP_030_3_NC_024384(7) PHAGE_Lister_vB_LmoS_188_NC_028871(5) PHAGE_Lister_A500_NC_009810(4) PHAGE_Lister_A006_NC_009815(3) PHAGE_Lister_B054_NC_009813(2) PHAGE_Strept_K13_NC_024357(1) PHAGE_Clostr_phiCT453B_NC_029004(1) PHAGE_Clostr_phiCTC2B_NC_030951(1) PHAGE_Brevib_Abouo_NC_029029(1) PHAGE_Brevib_Osiris_NC_028969(1) PHAGE_Brevib_Davies_NC_022980(1) PHAGE_Bacill_phBC6A51_NC_004820(1) PHAGE_Clostr_phiCT19406B_NC_030947(1) PHAGE_Bacill_G_NC_023719(1) PHAGE_Entero_EFC_1_NC_025453(1) PHAGE_Strept_phiARI0468_1_NC_031929(1) PHAGE_Clostr_phiCD211_NC_029048(1) |
| First Most Common Phage # | 4 |
| First Most Common Phage % | 88.88% |
| GC % | 36.91% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|AL591983.1| Listeria monocytogenes EGD-e, complete genome segment 11/12. 324050, gc%: 38.66%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 15 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(290..478) | PHAGE_Lister_A118_NC_003216: gp45; -; phage(gi16798832) | 1.71e-30 | Showinfo_outline |
| 2 | complement(586..801) | PHAGE_Lister_A118_NC_003216: gp44; -; phage(gi16798831) | 4.33e-41 | Showinfo_outline |
| 3 | complement(798..1331) | PHAGE_Lister_A006_NC_009815: gp37; -; phage(gi157325453) | 5.06e-109 | Showinfo_outline |
| 4 | complement(1454..2230) | PHAGE_Lister_A118_NC_003216: putative anti-repressor promoter; -; phage(gi16798829) | 5.71e-150 | Showinfo_outline |
| 5 | 1721..1733 | attL | 0.0 | Showinfo_outline |
| 6 | complement(2212..2487) | -; - | 0.0 | Showinfo_outline |
| 7 | complement(2493..2774) | PHAGE_Lister_A118_NC_003216: gp41; -; phage(gi16798827) | 3.75e-41 | Showinfo_outline |
| 8 | complement(2800..3084) | PHAGE_Lister_vB_LmoS_293_NC_028929: hypothetical protein; -; phage(gi971756915) | 4.46e-55 | Showinfo_outline |
| 9 | complement(3287..3529) | PHAGE_Lister_B054_NC_009813: gp42; -; phage(gi157325326) | 5.82e-16 | Showinfo_outline |
| 10 | PHAGE_Lister_A118_NC_003216: putative repressor protein; -; phage(gi16798819) | 1.33e-13 | Showinfo_outline | |
| 11 | PHAGE_Lister_A118_NC_003216: gp33; -; phage(gi16798816) | 3.74e-112 | Showinfo_outline | |
| 12 | PHAGE_Lister_A118_NC_003216: gp32; -; phage(gi16798815) | 1.86e-05 | Showinfo_outline | |
| 13 | PHAGE_Lister_A118_NC_003216: putative integrase; -; phage(gi16798814) | 0.0 | Showinfo_outline | |
| 14 | complement(7888..8235) | PHAGE_Clostr_phiCTC2B_NC_030951: hypothetical protein; -; phage(gi100002) | 1.50e-09 | Showinfo_outline |
| 15 | 22086..22098 | attR | 0.0 | Showinfo_outline |
Sequence
>complement(290..478)
[ListeriamonocytogenesEGD-e]
Sequence
>complement(586..801)
[ListeriamonocytogenesEGD-e]
Sequence
>complement(798..1331)
[ListeriamonocytogenesEGD-e]
Sequence
>complement(1454..2230)
[ListeriamonocytogenesEGD-e]
Sequence
>1721..1733
AGCTAAATCTTTT
Sequence
>complement(2212..2487)
[ListeriamonocytogenesEGD-e]
Sequence
>complement(2493..2774)
[ListeriamonocytogenesEGD-e]
Sequence
>complement(2800..3084)
[ListeriamonocytogenesEGD-e]
Sequence
>complement(3287..3529)
[ListeriamonocytogenesEGD-e]
Sequence
>PHAGE_Lister_A118_NC_003216: putative repressor protein; -; phage(gi16798819)
Sequence
>PHAGE_Lister_A118_NC_003216: gp33; -; phage(gi16798816)
Sequence
>PHAGE_Lister_A118_NC_003216: gp32; -; phage(gi16798815)
Sequence
>PHAGE_Lister_A118_NC_003216: putative integrase; -; phage(gi16798814)
Sequence
>complement(7888..8235)
[ListeriamonocytogenesEGD-e]
Sequence
>22086..22098
AGCTAAATCTTTT
Listeria monocytogenes EGD-e, complete genome segment 11/12
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 324050 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: PHAGE_Lister_A118_NC_003216 gp45 (Region 1)
Locus: PHAGE_Lister_A118_NC_003216 gp45ORF Start: 290
ORF Stop: 478
Strand: Backward
Protein Sequence: MAERIFRKQTIFGNSEIFIDDRTKMIANPAFRQKIALIETGCEKMTDYIEELKLKGYEEVTR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Lister_A118_NC_003216 gp45, -, phage(gi16798832), PHAGE_Lister_A118_NC_003216
Homolog/Ortholog E-Value: 1.71e-30
Locus 2: PHAGE_Lister_A118_NC_003216 gp44 (Region 1)
Locus: PHAGE_Lister_A118_NC_003216 gp44ORF Start: 586
ORF Stop: 801
Strand: Backward
Protein Sequence: MSEVLVSASYEGYESKSINFTEINNIVKERFKKIDEVERKKRAETFNKKYEVTKELVDGHLREIIIPRRTL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Lister_A118_NC_003216 gp44, -, phage(gi16798831), PHAGE_Lister_A118_NC_003216
Homolog/Ortholog E-Value: 4.33e-41
Locus 3: PHAGE_Lister_A006_NC_009815 gp37 (Region 1)
Locus: PHAGE_Lister_A006_NC_009815 gp37ORF Start: 798
ORF Stop: 1331
Strand: Backward
Protein Sequence: MFQKSTSATAAMQVLAETRTQKELAIDSYVTPALISNQIKGKRTVSLEQAEQLIDSYNEPRSTYLFAHEFSNGMIPPLFDGLDNHHASLTNRFELEVEEAMNTLKNGLETMTFNLRKGDMLQREAAKQAISEITDVVASALTLNASIAIAFNIDLQQVLNKRDLYYQKSGLVRSCGK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Lister_A006_NC_009815 gp37, -, phage(gi157325453), PHAGE_Lister_A006_NC_009815
Homolog/Ortholog E-Value: 5.06e-109
Locus 4: PHAGE_Lister_A118_NC_003216 putative anti-repressor promoter (Region 1)
Locus: PHAGE_Lister_A118_NC_003216 putative anti-repressor promoterORF Start: 1454
ORF Stop: 2230
Strand: Backward
Protein Sequence: MSNLQVIANEMLPVLENEQGEKFVDARMLHEKLLVNTRFNDWIYRMIGNYGYENGLDFYSTLSKTNGRPSTNYFLTLDTAKELAMVQNNEMGRAIRKYFIEVEKQARKLATEYPAFSYMIEDPVARAKKWIEEQQEKQEVLKKLEEQKPKVVFAEAVQTSENTILVKDLATILKQKGLDIGQNRLFEWLRGSGYLLSKGAYYNKPSQKAMNLGLFEQKTHIHTDRNGLMKTTYTPQVTGKGQVYLLNKLLEEHNQVII
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Lister_A118_NC_003216 putative anti-repressor promoter, -, phage(gi16798829), PHAGE_Lister_A118_NC_003216
Homolog/Ortholog E-Value: 5.71e-150
Locus 5: attL (Region 1)
Locus: attLORF Start: 1721
ORF Stop: 1733
Strand: Forward
Protein Sequence: AGCTAAATCTTTT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 6: 2212 (Region 1)
Locus: 2212ORF Start: 2212
ORF Stop: 2487
Strand: Backward
Protein Sequence: MIFTVNSFPQSGHVFTPGLTVNTCEHSGQLPSVPFLIISCFAIFRLCSLICLSNFFESNLILTPILPTSLHKNYSTVKGRTERRTKCQIYK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: 2212, -, -
Homolog/Ortholog E-Value: N/A
Locus 7: PHAGE_Lister_A118_NC_003216 gp41 (Region 1)
Locus: PHAGE_Lister_A118_NC_003216 gp41ORF Start: 2493
ORF Stop: 2774
Strand: Backward
Protein Sequence: MNNIKQAIIKLETILENGNAIESGSFVKYSVIKNILSLLEKDQELKIIEMKVELNGVEDSIENATLLEKRLIEAKSLVEDLASTINSLEIKVK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Lister_A118_NC_003216 gp41, -, phage(gi16798827), PHAGE_Lister_A118_NC_003216
Homolog/Ortholog E-Value: 3.75e-41
Locus 8: PHAGE_Lister_vB_LmoS_293_NC_028929 hypothetical protein (Region 1)
Locus: PHAGE_Lister_vB_LmoS_293_NC_028929 hypothetical proteinORF Start: 2800
ORF Stop: 3084
Strand: Backward
Protein Sequence: MNRRYLSNKRSEQKDCVFKTKDIPPENLKSLNIKMQGDRNCCYGVLEINGKQLRKGITAVKLDLKAGSLPVVQVEYHPFTISEEMQRLIWSGKY
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PHAGE_Lister_vB_LmoS_293_NC_028929 hypothetical protein, -, phage(gi971756915), PHAGE_Lister_vB_LmoS_293_NC_028929
Homolog/Ortholog E-Value: 4.46e-55
Locus 9: PHAGE_Lister_B054_NC_009813 gp42 (Region 1)
Locus: PHAGE_Lister_B054_NC_009813 gp42ORF Start: 3287
ORF Stop: 3529
Strand: Backward
Protein Sequence: MRIWLKKIREENGLTQQDVAELADVERTTYASIEQGRRNPSVVNAMRIASVLDFEWTIFFDDKVREKSHFYLNEKQEARK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Lister_B054_NC_009813 gp42, -, phage(gi157325326), PHAGE_Lister_B054_NC_009813
Homolog/Ortholog E-Value: 5.82e-16
Locus 10: PHAGE_Clostr_phiCTC2B_NC_030951 hypothetical protein (Region 1)
Locus: PHAGE_Clostr_phiCTC2B_NC_030951 hypothetical proteinORF Start: 7888
ORF Stop: 8235
Strand: Backward
Protein Sequence: MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFLLDDVAGLREKNSVNAFPLIGNPELEKWYLELPYTYSEDELLMLKRIADAIENKK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PHAGE_Clostr_phiCTC2B_NC_030951 hypothetical protein, -, phage(gi100002), PHAGE_Clostr_phiCTC2B_NC_030951
Homolog/Ortholog E-Value: 1.50e-09
Locus 11: attR (Region 1)
Locus: attRORF Start: 22086
ORF Stop: 22098
Strand: Forward
Protein Sequence: AGCTAAATCTTTT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
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