Submission Results
Sequence Name: Streptococcus pneumoniae 2070109, whole genome shotgun sequencing
GenBank Accession Number: ALBA00000000.1 open_in_new
GenInfo (GI) Number: 395583643 open_in_new
Download Results: ALBA00000000.1.PHASTER.zip
gi|395583643|ref|ALBA00000000.1| Streptococcus pneumoniae 2070109, whole genome shotgun sequencing .1998834, gc%: 39.79%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 14.6Kb | incomplete | 60 | 15 | 18015-32617 info_outline | PHAGE_Prochl_P_SSM7_NC_015290(2) | 42.90% | Show info_outline |
Region DNA
>1 18015-32617 ATGAAAGAAAAAGAAATTTTTGACCGTATTGTGACCATTATCCAAGAGCGACAGGGAGAGGATTTTGTCG TGACAGAATCCTTGAGTCTGAAAGACGACTTGGATGCTGACTCAGTTGATTTGATGGAGTTTATCTTGAC GCTGGAGGATGAATTTAGTATCGAAATCAGCGATGAGGAAATTGACCAACTCCAAAGTGTAGGAGATGTG GTTAAAATCATTCAAGGAAAATAGCAATCGGAGTTCCAAGTCAACGGAAGTAGATGGTTTTTAGAAATGA GAAATATCGGACAAGCTGGTAAAATCTTGGCTGACAGTGGTTATCAAGGGCTCATGAAGATATATCCTCA AGCACAAACTCCACGTAAATCCAGCAAACTCAAGCCGCTAACAGTTGAAGATAAAGCCTGTAACCATGCG CTATCTAAGGAGAGAAGCAAGGTTGAGAATATCTTTGCCAAAGTAAAAACGTTTAAAATGTTTTCAACAA CCTATCGAAATCATCGTAAACGCTTCGGATTACGAATGAATTTGATTGCTGGTATTATCAATCATGAACT AGGATTCTAGTTTTGCAGGAAGTCTAATAGTAAAAAAGTGATTAGAAAACATCTTTTTTAAAAATAGAGA TGATTTTGAAACAAAAAAGCTAATTCAAGATGTTTCGATGCCAATTCAAGATTTGGATGAAAAAAATTAA TAGATACTGTTATACTAAACTTGTCAAGTTTGTAACAAGACAAATATTAAAAATAAAAAAGAGGTATTCG TTATGAATACAAAAAAGATGTCACAATTTGAAATTATGGATACTGAGATGCTTGCTTGCGTTGAAGGTGG CGGATGCAATTGGGGAGATTTTGCCAAAGCAGGTGTTGGAGGAGGAGCAGCACGAGGTCTTTAGCTAGGA ATTAAAACAAGAACATGGCAAGGTGCAGCAACTGGTGCTGCGGGAGGAGCTATACTTGGAGGTGTGGCCT ATGCAGCGACATGTTGGTGGTAATTATGGATTTTAAAAGTTTTATTATTGGTTTAGTAGTTGGTATATTT GGTCCTTATATGGATGATTTAATTAGAAAAAAATTTTTAAAGTCTTCGGAGAAGAAAACAGAAAAATCTG TTAAAAAATAATCAAAACTATAAATGATGAATCTGAATCAAAATTATTTTGCGCATGTAAAGAGGAGTCT TATAGTAACGAGTCAAAAAAGGAGTAACTATGAATCGTAATTTAGAACGGTGTTATCTATTCTGACTAGG AATAGATCATACCAGAGGCGGCTTAGAAATAGCAGGGACATTAGAAATTGAAGTAATAAATAGGATGTCA CAAATGTTGCTATCAATGATTTATTTGTTCCAAGCTTGCCTAGGGTGTCAGTAAAAAATCAATTTCCTTT CAATAGCATATTTTTAGTGGGCAGGACTCTTGTTCTGCCTATTCCGGCTCTTTGTCAACTGTAGTGGGTT GAAAAAAAGCTAAGCTCGAGAAAGGACAAATTTCGTCCTTTCTTTTTTGATATTCAGGGCGATAAAAATC CGTTTTTTGAAGTTTTCAAAGTTCCGAAAACCAAAGGCATTGCGCTTGATAAGTTTGATGAGATTATTGG TCGCTTCCAATTTGGCGTTTGAATAGGGTAGTTGAAGGGCGTTGACGATTTTCTCTTTGTCCTTTAGAAA GGTTTTAAAGACAGTCTGAAAAAGAGGATGAACCTGCTTAAGATTGTCCTCAATAAGTCCGAAAAATTTC TCTGGTTCCTTATTCTGAAAGTGAAACAGCAAGAGTTGATAGAGCTGATAGTGGTGTTTCAAGTCTTGTG AATAGCTCAAAAGCTTGTCTAAAATCTCTTTATTGGTTAAATGCATACGAAAAGTAGGACGATAAAATCG CTTATCACTCAGTTTACGACTATCCTGTTGTATGAGCTTCCAGTAGCGCTTGATAGCCTTGTATTCATGG GATTTTCGATGAAACTGATTCATGATTTGAACACGCACACGACTCATAGCACGGCTAAGATGTTGTACAA TGTGAAAGCGATCCAACACGATTTTAGCACACGGGAAAAGTTGTCTAGCTAAGTCATAGTAAGGACTAAA CATATCCATAGTAATAATTTTGACGCGACATCGGACAACTCTATCGTAGCGAAGAAAGTGATTTCGAATG ATAGCTTGTGTTCTACCCTCAAGAACAGTGATGATATTGAGATTGTTAAAATCTTGCGCAATGAAGCTCA TCTTTCCCTTTGTAAACAGTCACTCCCCGGACTGTTTCAACGTCCCAAGACATAATCTTAGGCAGATTTC TAAAATTACACTCAAAGTGGAAGTCATTGAGCTTTCGAATGACAGTTGAAGTTGAGATGGAAAGCTGATG GGCAATATCAGTCATAGAAATCTTTTCAATTAACTTTTGAGCAATCTTTTGGTTGATGATACGAGGGATT TGATGATTTTCTTGACGATAGAAGTTTCAGCGACCATATTTTTGAACAATGATAGCACTTGAAACGACGC TTTCTAAGGAGAATTCTAGTAGGCATACCAGTTGTTCAAGATAAGGAATTTTAGAAGGTTTTTGAAAGTC ATATTTCTTCAATTGGTTTCCGCACTCAGGGCAAGATGGAGCTCATAGTCCAGTTTGGCGATGATTTCTT TGTGTGTATCCTATTGATGATATCTAAATCTTGGATATTTGGGTCTTTAATGTCTAGTAATTTTGTGATA AAATGTAATTGTTCCATATGAATCTTTCTAATGAGTTGTTTTGTCGCTTTTCATTATAGATCTTATGGGA CTTTTTTCTCACAAAAATAGGCTCCATAATATCCATAGGGGATTTACCCACTACAAATATTATAGAGCCT ATTTTTTTATCCAAAAAGTGCAGTTGGGAGGGAGATAGGCTCATTTGGGAAGGAAGTCCAGTTTTTGTTT AGTGATTGGGGTAAGATAGTTGTTATCAGATGAGTTTATACTCTTCGAAAATCAAATTCAAACCACGTCA ACGTCGCCTTGCCGTATATATGTGACTGACTTCGTCAGTCCTATCTACAACCTCAAAACAGTGTTTTGAG CAGCCTGCGGCTAGTTTCCTAGTTTGCTCTTTGATTTTCATTGAGTATTAGGGAAAAGGAGATGAATATG AAATTTGGGAAACGTCACTATCGTCCGCAAGTGGATCAGATGGACTGCGGTGTAGCTTCATTAGCCATGG TTTTTGGCTACTATGGTAGTTATTATTTTTTGGCTCACTTGCGAGAATTGGCTAAGACGACCATGGATGG GACGACGGCTTTGGGCTTGGTCAAGGTGGCAGAGGAGATTGGTTTTGAGACGCGAGCCATTAAGGCGGAT ATGACGCTTTTTGACTTGCCGGATTTGACTTTTCCTTTTGTTGCCCATGTGCTTAAGGAAGGGAAATTGC TCCACTACTATGTGGTGACTGGGCAGGATAAGGATAGCATTCATATTGCCGATCCAGATCCCGGGGTGAA GTTGACTAAACTGCCACGTGAGCGTTTTGAGGAAGAATGGACAGGAGTGACTCTTTTTATGGCACCTAGT CCAGACTATAAGCCTTATAAGGAACAAAAAAATGGTCTGCTCTCTTTTATCCCTATATTAGTGAAGCAGC GTGGCTTGATTGCCAATATCGTTTTGGCAACACTCTTGGTAACCGTGATTAACATTGTGGGTTCTTATTA TCTGCAGTCTATCATTGATACCTATGTGCCAGATCAGATGCGTTCGACACTAGGGATTATTTCTATTGGG CTAGTCATCGTCTACATCCTCCAGCAAATCTTGTCTTACGCTCAGGAGTATCTCTTGCTTGTTTTGGGGC AACGCTTGTCGATTGACGTGATTTTGTCCTATATCAAGCATGTTTTTCACCTCCCTATGTCCTTCTTTGC GACACGCAGGACAGGGGAGATCGTGTCTCGTTTTACAGATGCTAACAGTATCATCGATGCGCTGGCTTCG ACCATCCTTTCGATTTTCCTAGATGTGTCAACGGTTGTCATTATTTCCCTTGTTCTATTTTCACAAAATA CCAATCTCTTTTTCATGACTTTATTGGCGCTTCCTATCTACACAGTGATTATCTTTGCCTTTATGAAGCC GTTTGAAAAGATGAATCGGGATACCATGGAAGCCAATGCGGTTCTGTCTTCTTCTATCATTGAGGACATC AACGGTATTGAGACTATCAAGTCCTTGACCAGTGAAAGTCAGCGTTACCAAAAAATTGACAAGGAATTTG TGGATTATCTGAAGAAATCCTTTACCTATAGTCGAGCAGAGAGTCAGCAAAAGGCTCTGAAAAAGGTTGC CCATCTCTTGCTTAATGTCGGCATTCTCTGGATGGGGGCTGTTCTGGTCATGGATGGCAAGATGAGTTTG GGGCAGTTGATTACCTATAATACCTTGCTGGTTTACTTTACCAATCCTTTGGAAAATATCATCAATCTGC AAACCAAGCTTCAGACAGCGCAGGTTGCCAATAACCGTCTAAATGAAGTGTATCTAGTAGCTTCTGAGTT TGAGGAAAAGAAAACAGTTGAGGATTTGAGCTTGATGAAGGGAGAGATGACTTTCAAGCAGGTTCATTAC AAGTATGGCTATGGTCGAGACGTCTTGTCGGATATCAATTTAACCGTTCCCCAAGGGTCTAAGGTGGCTT TTGTGGGGATTTCAGGGTCAGGTAAGACGACTTTGGCCAAGATGATGGTTAATTTTTACGACCCAAGTCA AGGGGAGATTAGTCTGGGTGGTGTCAATCTCAATCAGATTGATAAAAAAGCCCTACGCCAGTACATCAAC TATCTGCCTCAACAGCCCTATGTCTTTAACGGAACGATTTTGGAGAATCTTCTTTTGGGAGCCAAGGAGG GGACGACACAGGAAGATATCTTACGGGCGGTCGAATTGGTAGAGATTCGAGAGGATATCGAGCGCATGCC ACTGAATTACCAGACAGAATTGACTTCGGATGGGGCAGGGATTTCAGGTGGTCAACGTCAGAGAATCGCT TTGGCGCGTGCTCTCTTGACAGATGCGCCGGTCTTGATTTTGGATGAGGCGACTAGCAGTTTGGATATTT TGACAGAGAAGCGGATTGTCGATAATCTCATGGCTTTGGACAAGACCTTGATTTTCATTGCTCACCGCTT GACTATTGCTGAGCGGACAGAGAAGGTGGTTGTCTTGGATCAGGGCAAGATTGTCGAAGAAGGAAAGCAT GCTGATTTGCTTGCACAGGGTGGCTTTTACGCCCATTTGGTCAATAGCTAGAAAGAGGAGAGGATGAAAC CAGAATTTTTAGAAAGTGCGGAGTTTTATAATCGTCGTTACCATAATTTTTCCAGTAGTGTGATTGTACC CATGGCCCTTCTGCTCGTGTTTTTACTTGGCTTTGCAACTGTTGCAGAAAAGGAGATGAGTTTGTCCACT AGAGCTACTGTCGAACCTAGTCGTATCCTTGCAAATATCCAGTCAACTAGCAACAATCGTATTCTTGTCA ATCATTTGGAAGAAAATAAGCTGGTTAAGAAGGGGGATCTTTTGGTTCAATACCAAGAAGGGACAGAGGG TGTCCAAGCGGAGTCCTATGCCAGTCAGTTGGACATGCTAAAGGATCAAAAAAAGCAATTGGAGTATCTG CAAAAGAGCCTGCAAGAAGGGGAGAACCACTTTCCAGAGGAGGATAAGTTTGGCTACCAAGCCACCTTTC GCGACTACATCAGTCAAGCAGGCAGTCTTAGGGCTAGTACATCGCAACAAAATGAGACCATCGCGTCCCA GAATGCAGCAGCTAGCCAAACCCAAGCCGAAATCGGCAACCTCATCAGTCAAACAGAGGCTAAAATTCGC GATTACCAGACAGCTAAGTCAGCTATGGAAACAGGTGCTTCCTTGGCCAGTCAGAATCTAGCCTACTCTC TTTACCAGTCCTACAAGTCTCAGGGCGAGGAAAATCCCCAAACTAAGGTTCAGGCAGTTGCACAGGTTGA AGCACAGATTTCTCAGTTAGAATCTAGTCTTGCTACTTACCGTGTCCAGTATGCAGGTTCAGGTACCCAG CAAGCCTATGCGTCAGGGTTAAGCAGTCAATTGGAATCCCTTAAATCCCAACATTTGGCAAAGGTTGGTC AGGAATTGACCCTTCTAGCCCAGAAAATCTTGGAGGCAGAGTCAGGTAAGAAGGTACAGGGAAATCTTTT AGACAAGGGGAAAATTACGGCGAGTGAGGATGGGGTGCTTCATCTTAATCCTGAGACCAGTGATTCTAGC ATGGTTGCAGAAGGTGCCCTACTAGCCCAACTTTATCCATCTTTGGAAAGAGAAGGGAAAGCCAAACTCA CAGCCTATCTAAGTTCAAAAGATGTAGCAAGAATCAAGGTCGGTGATTCTGTTCGCTATACTACGACTCA TGATGCCGGGAATCAACTTTTCCTAGATTCAACTATTACAAGTATTGATGCGACAGCTACTAAGACTGAG AAAGGGAATTTCTTTAAAATCGAGGCGGAGACTAATCTAACTTCGGAGCAGGCTGAAAAACTTAGGTACG GGGTGGAAGGCCGCTTGCAGATGATTACGGGCAAGAAAAGTTATCTACGTTATTATTTGGATCAATTTTT GAACAAAGAGTAATGTTCGTGTTTTTAGAGTTAAATAATTTTTAAACTGTGAGAAAGATTCTTCTTGCAG TTTTTTCTTTACAATTTTTGAAAAACATCTACTATTTATTCGGTTAAATTCTTGTGTTTTTTGGTTTTTT GTGGTAAAATGTGCTCAAGTAATACGAAAGGCGAACTTTAAAATGTCAAAACAATTGATCTATTCGGGAA AAGCTAAAGATATCTATACAACTGAGGATGAAAATCTTATTATTTCAACTTACAAGGACCAGGCGACTGC TTTCAACGGTGTCAAGAAGGAGCAGATTGCAGGTAAGGGAGTCTTGAATAATCAGATCTCATCTTTTATT TTTGAGAAATTAAATGCGGCTGGTGTGGCGACTCACTTTGTGGAGAAACTTTCAGACACGGAACAACTCA ATAAAAAGGTTAAGATTATTCCTTTGGAAGTCGTGCTCCGCAACTATACTGCTGGTTCCTTTTCAAAACG TTTTGGTGTGGATGAGGGAATCGCCTTGGAGACTCCGATTGTCGAATTTTACTACAAAAATGATGATTTG GATGATCCATTTATCAATGATGAGCATGTGAAATTCCTACAGATTGCGGGTGACCAGCAGATTGCCTACT TGAAGGAAGAAACGCGTCGTATCAATGAACTATTGAAAGTCTGGTTTGCTGAGATTGGGCTTAAATTGAT TGACTTTAAGCTAGAGTTCGGTTTTGACAAGGATGGCAAGATTATCTTGGCAGACGAATTTTCACCAGAT AACTGCCGCTTGTGGGACGCTGATGGCAACCACATGGATAAGGATGTTTTCCGTAGAGGATTGGGAGAAC TAACCGACGTTTATGAGATTGTTTGGGAAAAGTTGCAGGAATTGAAATAATCTGTTTGCAACGGAAAACC TTCGTCTCTCAACTAAAAGGACTCAGGCTGAAAAGGTCCCCCAGACCTTTTCACTCTGTAGAGAACTAGG TGAACTAACAGATGTTTACGAAATTGTCTGGGAAAAGTTGCAGGGTTTAAAATAACAACCTCAAGGCTGT TTGGGAATATTGCAAGAGCTGAAATAAAGGAATAAGAATTGATGGATAAACGTATTTTTGTTGAAAAAAA GGCTGATTTTCAGGTCAAGTCAGAGAGTTTGGTTAGAGAGCTCCAGCACAACTTGGGACTGTCAAGCTTG AAAAGTATTCGTATTGTGCAAGTATATGATGTATTTGACTTGGCTGAGGACTTGTTTGCACCTGCAGAGA AGCACATTTTCTCTGAGCAGGTAACCGACCATGTTTTAGATGAAGTATCTGTGCAGGCGGATCTTGCTAA CTATGCTTTCTTTGCCATTGAAAGTCTGCCAGGGCAGTTTGACCAGCGTGCAGCTTCGTCACAGGAAGCC TTGCTTTTGTTGGGAAGTTCGAGTGACGTGACAGTCAACACAGCCCAACTTTACTTGGTGAATAAAGATA TTGATGCGACTGAGTTGGAAGCTGTCAAAAACTACCTGCTCAATCCAGTTGATTCTCGTTTCAAGGATAT CACGACAGGGATTGCCAAGCAGGAGTTTTCAGAGTCAGACAAGATCATTCCAAAATTGACTTTCTTTGAA AGCTATACAGCAGAAGACTTTGCTCGCTACAAGGCCGAACAAGGGATGGCCATGGAAGTGGATGATTTGC TCTTTATCCAAGACTACTTTAAGTCAATCGGGCGCGTGCCAACTGAGACTGAACTCAAGGTTTTGGACAC TTACTGGTCTGACCACTGCCGTCATACGACTTTTGAGACAGAGTTGAAACACATCGACTTTTCAGCTTCT AAATTTCAAAAGCAATTGCAGTCAACCTATGACAAGTATATTGCCATGCGCGAGGAATTAGGTCGGTCTG AAAAACCACAAACCTTGATGGATATGGCGACTATTTTCGGTCGTTATGAGCGTGCTAATGGACGATTGGA TGATATGGAAGTCTCTGACGAAATCAATGCCTGCTCAGTTGAAATTGAAGTGGACGTTGATGGTGTCAAG GAACCTTGGCTTCTCATGTTTAAAAACGAAACCCACAACCATCCAACAGAAATTGAGCCATTTGGTGGAG CGGCTACCTGTATTGGTGGAGCTATTCGTGATCCGTTGTCAGGCCGTTCCTATGTTTACCAAGCCATGCG TATTTCAGGTGCTGGTGATATTACAGCACCGATTTCGGAAACTCGCGCTGGGAAATTGCCACAACAAGTC ATTTCTAAAACAGCAGCTCATGGTTATTCTTCATATGGTAACCAGATTGGGCTTGCAACAACCTACGTTC GTGAATACTTCCACCCAGGCTTTGTAGCTAAACGTATGGAACTTGGTGCCGTTGTTGGTGCGGCTCCCAA GGGCAATGTTGTCCGTGAAAAACCTGAAGCAGGTGATGTGATCATCCTTCTCGGAGGCAAAACAGGTCGT GATGGTGTCGGTGGTGCGACGGGCTCTTCTAAGGTTCAAACAGTTGAGTCTGTAGAGACTGCTGGTGCTG AGGTTCAAAAAGGAAATGCCATCGAAGAACGCAAGATTCAGCGCCTCTTCCGTAATGGCAATGTCACTCG TCTGATCAAGAAGTCCAATGACTTTGGGGCAGGCGGTGTCTGTGTGGCTATCGGTGAATTGGCAGACGGT CTTGAAATCGACCTCAACAAGGTGCCTCTTAAATACCAGGGCTTGAATGGTACAGAAATTGCCATCTCTG AATCACAAGAACGGATGGCGGTCGTGGTTCGTCCTGAAGATGTGGATGCCTTCGTTGCCGAATGTAACAA AGAAAATATTGATGCTGTTGTGGTGGCGACAGTAACTGAAAAACCAAATCTTGTCATGCACTGGAATGGT GAGACAATCGTTGACTTGGAGCGTCGTTTCCTTGACACCAATGGTGTGCGCGTGGTTGTCGATGCCAAAG TTGTGGACAAGGATGTCAAACTCCCAGAAGAGCGTCAAACATCTGCTGAAACACTGGAATCAGATACCCT TACGGTTCTATCTGACCTCAACCATGCAAGTCAAAAAGGATTACAGACTGTCTTTGACTGCTCTGTTGGA CGCTCAACGGTTAATCACCCACTTGGTGGTCGTTACCAACTCACACCAACTGAGGCATCTGTGCAGAAAT TGCCAGTTCAACACGGTGTGACTCATACTGCGTCGGTCATTGCTCAAGGTTTCAACCCATATGTAGCTGA ATGGTCTCCATACCACGGTGCTGCTTACGCGGTTATCGAAGCAACTGCTCGTTTGGTGGCTGCTGGTGCC AACTGGTCTAAGGCTCGTTTCTCTTACCAAGAATATTTCGAGCGGATGGACAAGCAAGCAGAGCGTTTTG GTCAGCCAGTAGCCGCCCTTCTAGGCTCTATTGAAGCTCAGATTCAACTTGGCTTGCCATCTATCGGTGG TAAGGACTCCATGTCTGGTACCTTTGAAGAATTGACCGTTCCGCCAACCTTGGTTGCCTTTGGGGTGACG ACGGCAGATAGCCGTAAGGTGCTCTCTCCAGAATTTAAAGCTGTTGGGGAAAATATCTACTACATCCCAG GTCAAGCCCTCTCTGCAGAGATTGATTTTGACTTGATTAAGAAAAATTTTGCTCAGTTTGAAGCAAGCCA AGCTGACCATAAAGTGACATCTGCATCAGCTGTCAAATACGGTGGTGTAGTTGAAAGTTTGGCTCTTGCT ACCTTTGGAAACTATATTGGTGCAGAGGTGACCTTGCCTGAACTTAAAACAGCTTTGACAGCTCAATTAG GCGGCTTTGTCTTCACATCTCCTGAAGAAATTGCTGGAGTAGAGAAGATTGGACAAACGAAAGCAGACTT TACACTGACTGTCAACGGTGTGAAGCTAGATGGACACAAGCTTGACAGTGCATTTCAAGGGATATTGGAA GAAGTTTACCCAACAGAATTTACCCAAGCGAAAGAACTAGAAGAAGTACCAGCTGTGGCATCAGATGTTG TGATTAAAGCCAAAGAAAAGGTTGAAAAACCTGTGGTTTACATCCCAGTCTTTCCAGGAACCAACTCAGA ATATGATTCAGCTAAGGCCTTCGAAAAAGAAGGTGCAGAGGTCAATTTGGTGCTATTCGTGACCTTGAAT GAAGAAGCTATTGTCAAGTCAGTTGAAACTATGGTTGACAATATCGACAAGACTAATATTCTCTTCTTTG CCGGTGGATTCTCGGCTGCGGATGAACCAGATGGTTCAGCTAAGTTTATCGTCAATATCCTGCTTAATGA AAAAGTGCGTGTGGCTATTGATAGCTTTATCGCCCGTGGTGGCTTGATTATCGGTATTTGTAATGGATTC CAAGCCTTAGTCAAATCGGGTCTCCTACCATACGGAAACTTTGAAGATGCTAACAGTACTAGTCCAACCC TCTTCTACAATGATGCCAACCAACACGTGGCCAAGATGGTGGAAACTCGCATTGCCAATACCAACTCACC ATGGTTGGCTGGTGTGCAAGTGGGCGATATCCACGCTATTCCTGTTTCGCACGGTGAAGGGAAGTTTGTC GTGACGGCTGAGGAATTTGCAGAGCTCCGTGACAATGGACAAATTTTCAGCCAATACGTTGACTTTAACG GTAAACCAAGTATGGATTCTAAGTACAATCCGAATGGTTCTGTCCATGCCATCGAAGGAATTACCAGCAA GAATGGTCAAATCATCGGTAAGATGGGCCACTCAGAACGTTATGAGGATGGTCTTTTCCAAAATATCCCA GGCAATAAAGACCAACACCTGTTCGCATCAGCGGTTAAACATTTCACTGGAAAATAAGACTTACAGATTT TCTAATAGATAGTATCAGTAATGTAAAAGTCATGTAAATCTAGCTCTTGATGATTACAAATGAAAATTAG GTATAAAAAATGACATACGAAGTAAAATCTCTTAATGAAGAATGTGGTGTTTTCGGTATTTGGGGACATC CAGATGCTGCTAAGTTGACCTATTTTGGACTCCACAGTCTTCAACACCGTGGTCAGGAGGGGGCAGGAAT CCTCTCCAACGATCAAGGACAACTGAAGCGCCATCGTGACATGGGGCTTTTATCAGAAGTTTTCAGAAAT CCAGCTAATTTGGATAAATTGACAGGAGCTGGTGCGATTGGGCATGTGCGTTATGCGACTGCTGGCGAAG CTTCTGTAGATAACATCCAGCCCTTCCTCTTCCGTTTTCACGATATGCAGTTTGGCTTGGCTCATAATGG GAATCTGACCAATGCAGCCTCTCTCAAGAAAGAACTGGAACAAAGAGGAGCAATTTTCAGCGCTACTTCG GACTCTGAAATCTTGGCTCACCTCATTCGTCGTAGTCATAATCCTAGCCTGATGGGCAAAATCAAGGAAG CGCTCAGCCTTGTCAAAGGTGGTTTTGCCTATATCTTGCTGTTTGAGGACAAGTTGATTGCGGCTCTTGA CCCAAATGGATTCCGACCGCTTTCGATTGGTAAAATGGCTAATGGAGCAGTTGTTGTATCTTCTGAAACC TGTGCTTTTGAGGTCATTGGTGCCGAGTGGATTCGTGATTTGAAGCCAGGTGAGATTGTGATCATTGATG ACGAGGGCATTCAGTATGACAGCTATACAGATGATACCCAGTTGGCGGTTTGTTCTATGGAGTATATCTA CTTTGCTCGCCCTGATTCTAATATCCACGGTGTCAATGTCCATACGGCACGTAAGAGAATGGGAGCACAA TTGGCGCGAGAATTTAAGCATGAGGCAGATATTGTAGTTGGTGTGCCCAATTCTTCCCTAAGCGCGGCTA TGGGATTTGCGGAAGAATCAGGCTTACCAAATGAAATGGGTCTGATCAAAAACCAATACACCCAGCGAAC TTTTATCCAACCGACTCAAGAATTGCGGGAGCAAGGAGTGCGGATGAAACTGTCTGCTGTTTCGGGTGTT GTCAAAGGCAAACGTGTGGTCATGGTGGATGATTCCATTGTACGTGGAACAACCTCTCGTCGTATCGTTC AGCTCTTGAAAGAAGCGGGTGCGACTGAGGTTCACGTTGCCATTGGAAGTCCTGCACTAGCGTATCCATG TTTCTACGGGATTGATATCCAGACCCGTCAGGAGCTGATTGCAGCCAATCATACGGTCGAAGAAACTCGC CAAATCATTGGTGCGGACAGTCTGACTTATCTTTCAATTGATGGCTTGATTGAGTCGATTGGTATCGAAA CAGATGCGCCGAACGGTGGTCTCTGTGTCGCTTACTTTGACGGTGACTACCCAACGCCTCTCTATGACTA CGAAGAAGACTATCGTAGAAGTTTGGAAGAAAAGACCAGTTTTTACAAGTAGGCGACAGATTCTCCATTA AAGAAAAGGAAAAAACAAATGACAAATAAAAATGCATATGCCCAGTCGGGTGTGGATGTTGAAGCGGGTT ATGAAGTTGTTGAACGGATTAAAAAGCACGTGGCTCGTACGGAGCGTGCAGGTGTCATGGGAGCTCTTGG TGGCTTTGGTGGTATGTTTGACCTTTCCAAGACTGGGGTTAAAGAACCCGTCTTGATTTCAGGGACTGAC GGTGTCGGAACCAAGCTCATGTTGGCTATCAAGTACGACAAGCACGATACCATCGGGCAGGACTGTGTGG CCATGTGTGTCAACGACATCATTGCTGCAGGTGCGGAACCCCTCTATTTTCTCGACTACGTAGCGACAGG GAAGAATGAGCCAGCTAAGCTAGAACAAGTGGTTGCTGGTGTGGCAGAAGGTTGTGTGCAGGCTGGTGCT GCCCTCATCGGTGGGGAAACGGCTGAAATGCCGGGCATGTACGGCGAAGACGACTATGACTTGGCTGGTT TTGCGGTCGGTGTGGCTGAAAAATCTCAAATCATTGACGGTTCAAAGGTGGTAGAGGGAGATGTTCTTCT CGGACTTGCTTCAAGTGGGATTCACTCAAATGGTTACTCTTTGGTTCGTCGTGTCTTTGCGGATTACACA GGTGAGGAAGTCCTACCAGAATTGGAAGGCAAGAAACTTAAAGAAGTTCTACTTGAGCCGACTCGTATCT ATGTCAAGGCTGTCTTGTCGCTCATCAAAGAAGAGTTGGTCAACGGCATTGCCCACATCACAGGTGGTGG CTTTATCGAAAATGTCCCTCGTATGTTTGCAGATGACCTAGCTGCTGAAATTGATGAAAGCAAAGTTCCA GTGCTTCCAATTTTCAAAGCCCTTGAAAAATATGGTCAGATTAAACACGAAGAAATGTTTGAAATCTTCA ATATGGGTGTGGGACTTATGTTGGCGGTCAGCCCTGAAAATGTAGAGCGTGTAAAAGAATTGTTGGATGA AGCAGTCTATGAAATTGGTCGCATCGTCAAGAAAGAAAACGAAAGTGTCATTATCAAATGAAAAAAATAG CGGTTTTTGCCTCTGGTAATGGCTCAAATTTTCAGGTGATTGCCGAAGAATTTCCAGTGGAGTTTGTCTT TTCAGACCATCGTGATGCCTATGTGCTTGAGCGTGCAAAGCAGATCGGCGTTCTGTCCTATGCTTTTGAA CTCAAGGAGTTTGAGAGCAAGACAGACTACGAAGCAGCCCTTGTCGAACTCTTGGAAGAACACCAGATTG ACTTGGTTTGCCTAGCAGGCTACATGAAAATCGTTGGACCAACCTTATTGTCGGCTTATGAAGGTCGGAT TGTCAACATTCATCCAGCCTACTTGCCAGAATTTCCAGGAGCTCATGGGATTGAGGATGCTTGGAATGCT GGCGTGGGTCAGTCTGGTGTGACCATTCACTGGGTGGATTCGGGTGTGGATACAGGCCAGGTCATCAAAC AGGTTCGTGTGCCACGACTAGCTGATGATACCATTGACAGATTTGAAGCTCGCATCCATGAAGCAGAGTA CAGGTTGTATCCGGAAGTAGTGAAGGCTCTATTTACAGATTGA
Region Details
| Region | 1 |
| Region Length | 14.6Kb |
| Completeness(score) | incomplete(60) |
| Specific Keyword | transposase,capsid |
| Region Position | 18015-32617 |
| # tRNA | 0 |
| # Total Proteins | 15 |
| # Phage Hit Proteins | 10 |
| # Hypothetical Proteins | 1 |
| Phage + Hypothetical Protein % | 73.3% |
| # Bacterial Proteins | 4 |
| Attachment Site | no |
| # Phage Species | 9 |
| Most Common Phage Name(hit genes count) | PHAGE_Prochl_P_SSM7_NC_015290(2) PHAGE_Synech_S_SKS1_NC_020851(2) PHAGE_Prochl_P_SSM2_NC_006883(2) PHAGE_Parame_bursaria_Chlorella_virus_FR483_NC_008603(2) PHAGE_Synech_S_CAM8_NC_021530(2) PHAGE_Parame_bursaria_Chlorella_virus_AR158_NC_009899(2) PHAGE_Prochl_Syn33_NC_015285(2) PHAGE_Cronob_vB_CsaM_GAP32_NC_019401(1) PHAGE_Prochl_MED4_213_NC_020845(1) PHAGE_Parame_bursaria_Chlorella_virus_1_NC_000852(1) PHAGE_Serrat_phiMAM1_NC_020083(1) PHAGE_Synech_S_ShM2_NC_015281(1) PHAGE_Pseudo_vB_PaeS_PMG1_NC_016765(1) PHAGE_Amsact_moorei_entomopoxvirus__L__NC_002520(1) PHAGE_Parame_bursaria_Chlorella_virus_NY2A_NC_009898(1) PHAGE_Prochl_P_HM1_NC_015280(1) PHAGE_Synech_S_MbCM6_NC_019444(1) PHAGE_Prochl_Syn1_NC_015288(1) PHAGE_Plankt_PaV_LD_NC_016564(1) PHAGE_Pseudo_D3_NC_002484(1) PHAGE_Microb_Min1_NC_009603(1) PHAGE_Vibrio_12B3_NC_021067(1) PHAGE_Bacill_SPBc2_NC_001884(1) PHAGE_Megavi_lba_NC_020232(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 13.33% |
| GC % | 42.90% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|395583643|ref|ALBA00000000.1| Streptococcus pneumoniae 2070109, whole genome shotgun sequencing [asmbl_id: NC_000000].1998834, gc%: 39.79%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 15 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 18015..18248 | PHAGE_Vibrio_12B3_NC_021067: acyl carrier protein; AMCSP04_000024; phage(gi481019045) | 8e-08 | Showinfo_outline |
| 2 | 18321..18584 | PROPHAGE_Strept_2603V/R: IS1381 transposase protein B; AMCSP04_000025; phage(gi22537127) | 2e-37 | Showinfo_outline |
| 3 | 18787..18918 | bacteriocin-type signal sequence domain protein; AMCSP04_000026 | 0.0 | Showinfo_outline |
| 4 | 19020..19145 | pncF; AMCSP04_000027 | 0.0 | Showinfo_outline |
| 5 | complement(19494..20021) | PROPHAGE_Staphy_N315: transposase; AMCSP04_000028; phage(gi15927655) | 2e-16 | Showinfo_outline |
| 6 | complement(20230..20409) | transposase; AMCSP04_000029 | 0.0 | Showinfo_outline |
| 7 | complement(20491..20616) | hypothetical protein; AMCSP04_000030 | 0.0 | Showinfo_outline |
| 8 | complement(20630..20761) | transposase; AMCSP04_000031 | 0.0 | Showinfo_outline |
| 9 | 21162..23315 | PHAGE_Bacill_SPBc2_NC_001884: ABC transporter; AMCSP04_000032; phage(gi9630145) | 9e-81 | Showinfo_outline |
| 10 | 23328..24677 | PHAGE_Pseudo_vB_PaeS_PMG1_NC_016765: major capsid protein; AMCSP04_000033; phage(gi374531651) | 5e-05 | Showinfo_outline |
| 11 | 24847..25554 | PHAGE_Synech_S_CAM8_NC_021530: phosphoribosylaminoimidazole-succinocarboxamide synthase; AMCSP04_000034; phage(gi514050949) | 1e-43 | Showinfo_outline |
| 12 | 25756..29481 | PHAGE_Microb_Min1_NC_009603: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; AMCSP04_000035; phage(gi149882852) | 4e-41 | Showinfo_outline |
| 13 | 29574..31016 | PHAGE_Parame_bursaria_Chlorella_virus_FR483_NC_008603: hypothetical protein FR483_N035R; AMCSP04_000036; phage(gi155370133) | 1e-20 | Showinfo_outline |
| 14 | 31053..32075 | PHAGE_Synech_S_CAM8_NC_021530: phosphoribosylaminoimidazole synthetase; AMCSP04_000037; phage(gi514050953) | 9e-66 | Showinfo_outline |
| 15 | 32072..32617 | PHAGE_Synech_S_SKS1_NC_020851: cyanobacterial phosphoribosylglycinamide formyltransferase; AMCSP04_000038; phage(gi472340960) | 2e-25 | Showinfo_outline |
Sequence
>18015..18248
MKEKEIFDRIVTIIQERQGEDFVVTESLSLKDDLDADSVDLMEFILTLEDEFSIEISDEEIDQLQSVGDVVKIIQGK
Sequence
>18321..18584
MADSGYQGLMKIYPQAQTPRKSSKLKPLTVEDKACNHALSKERSKVENIFAKVKTFKMFSTTYRNHRKRFGLRMNLIAGIINHELGF
Sequence
>18787..18918
MNTKKMSQFEIMDTEMLACVEGGGCNWGDFAKAGVGGGAARGL
Sequence
>19020..19145
MDFKSFIIGLVVGIFGPYMDDLIRKKFLKSSEKKTEKSVKK
Sequence
>complement(19494..20021)
MSRVRVQIMNQFHRKSHEYKAIKRYWKLIQQDSRKLSDKRFYRPTFRMHLTNKEILDKLLSYSQDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPLFQTVFKTFLKDKEKIVNALQLPYSNAKLEATNNLIKLIKRNAFGFRNFENFKKRIFIALNIKKERTKFVLSRA
Sequence
>complement(20230..20409)
MTDIAHQLSISTSTVIRKLNDFHFECNFRNLPKIMSWDVETVRGVTVYKGKDELHCARF
Sequence
>complement(20491..20616)
MKKYDFQKPSKIPYLEQLVCLLEFSLESVVSSAIIVQKYGR
Sequence
>complement(20630..20761)
MEQLHFITKLLDIKDPNIQDLDIINRIHTKKSSPNWTMSSILP
Sequence
>21162..23315
MKFGKRHYRPQVDQMDCGVASLAMVFGYYGSYYFLAHLRELAKTTMDGTTALGLVKVAEEIGFETRAIKADMTLFDLPDLTFPFVAHVLKEGKLLHYYVVTGQDKDSIHIADPDPGVKLTKLPRERFEEEWTGVTLFMAPSPDYKPYKEQKNGLLSFIPILVKQRGLIANIVLATLLVTVINIVGSYYLQSIIDTYVPDQMRSTLGIISIGLVIVYILQQILSYAQEYLLLVLGQRLSIDVILSYIKHVFHLPMSFFATRRTGEIVSRFTDANSIIDALASTILSIFLDVSTVVIISLVLFSQNTNLFFMTLLALPIYTVIIFAFMKPFEKMNRDTMEANAVLSSSIIEDINGIETIKSLTSESQRYQKIDKEFVDYLKKSFTYSRAESQQKALKKVAHLLLNVGILWMGAVLVMDGKMSLGQLITYNTLLVYFTNPLENIINLQTKLQTAQVANNRLNEVYLVASEFEEKKTVEDLSLMKGEMTFKQVHYKYGYGRDVLSDINLTVPQGSKVAFVGISGSGKTTLAKMMVNFYDPSQGEISLGGVNLNQIDKKALRQYINYLPQQPYVFNGTILENLLLGAKEGTTQEDILRAVELVEIREDIERMPLNYQTELTSDGAGISGGQRQRIALARALLTDAPVLILDEATSSLDILTEKRIVDNLMALDKTLIFIAHRLTIAERTEKVVVLDQGKIVEEGKHADLLAQGGFYAHLVNS
Sequence
>23328..24677
MKPEFLESAEFYNRRYHNFSSSVIVPMALLLVFLLGFATVAEKEMSLSTRATVEPSRILANIQSTSNNRILVNHLEENKLVKKGDLLVQYQEGTEGVQAESYASQLDMLKDQKKQLEYLQKSLQEGENHFPEEDKFGYQATFRDYISQAGSLRASTSQQNETIASQNAAASQTQAEIGNLISQTEAKIRDYQTAKSAMETGASLASQNLAYSLYQSYKSQGEENPQTKVQAVAQVEAQISQLESSLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELTLLAQKILEAESGKKVQGNLLDKGKITASEDGVLHLNPETSDSSMVAEGALLAQLYPSLEREGKAKLTAYLSSKDVARIKVGDSVRYTTTHDAGNQLFLDSTITSIDATATKTEKGNFFKIEAETNLTSEQAEKLRYGVEGRLQMITGKKSYLRYYLDQFLNKE
Sequence
>24847..25554
MSKQLIYSGKAKDIYTTEDENLIISTYKDQATAFNGVKKEQIAGKGVLNNQISSFIFEKLNAAGVATHFVEKLSDTEQLNKKVKIIPLEVVLRNYTAGSFSKRFGVDEGIALETPIVEFYYKNDDLDDPFINDEHVKFLQIAGDQQIAYLKEETRRINELLKVWFAEIGLKLIDFKLEFGFDKDGKIILADEFSPDNCRLWDADGNHMDKDVFRRGLGELTDVYEIVWEKLQELK
Sequence
>25756..29481
MDKRIFVEKKADFQVKSESLVRELQHNLGLSSLKSIRIVQVYDVFDLAEDLFAPAEKHIFSEQVTDHVLDEVSVQADLANYAFFAIESLPGQFDQRAASSQEALLLLGSSSDVTVNTAQLYLVNKDIDATELEAVKNYLLNPVDSRFKDITTGIAKQEFSESDKIIPKLTFFESYTAEDFARYKAEQGMAMEVDDLLFIQDYFKSIGRVPTETELKVLDTYWSDHCRHTTFETELKHIDFSASKFQKQLQSTYDKYIAMREELGRSEKPQTLMDMATIFGRYERANGRLDDMEVSDEINACSVEIEVDVDGVKEPWLLMFKNETHNHPTEIEPFGGAATCIGGAIRDPLSGRSYVYQAMRISGAGDITAPISETRAGKLPQQVISKTAAHGYSSYGNQIGLATTYVREYFHPGFVAKRMELGAVVGAAPKGNVVREKPEAGDVIILLGGKTGRDGVGGATGSSKVQTVESVETAGAEVQKGNAIEERKIQRLFRNGNVTRLIKKSNDFGAGGVCVAIGELADGLEIDLNKVPLKYQGLNGTEIAISESQERMAVVVRPEDVDAFVAECNKENIDAVVVATVTEKPNLVMHWNGETIVDLERRFLDTNGVRVVVDAKVVDKDVKLPEERQTSAETLESDTLTVLSDLNHASQKGLQTVFDCSVGRSTVNHPLGGRYQLTPTEASVQKLPVQHGVTHTASVIAQGFNPYVAEWSPYHGAAYAVIEATARLVAAGANWSKARFSYQEYFERMDKQAERFGQPVAALLGSIEAQIQLGLPSIGGKDSMSGTFEELTVPPTLVAFGVTTADSRKVLSPEFKAVGENIYYIPGQALSAEIDFDLIKKNFAQFEASQADHKVTSASAVKYGGVVESLALATFGNYIGAEVTLPELKTALTAQLGGFVFTSPEEIAGVEKIGQTKADFTLTVNGVKLDGHKLDSAFQGILEEVYPTEFTQAKELEEVPAVASDVVIKAKEKVEKPVVYIPVFPGTNSEYDSAKAFEKEGAEVNLVLFVTLNEEAIVKSVETMVDNIDKTNILFFAGGFSAADEPDGSAKFIVNILLNEKVRVAIDSFIARGGLIIGICNGFQALVKSGLLPYGNFEDANSTSPTLFYNDANQHVAKMVETRIANTNSPWLAGVQVGDIHAIPVSHGEGKFVVTAEEFAELRDNGQIFSQYVDFNGKPSMDSKYNPNGSVHAIEGITSKNGQIIGKMGHSERYEDGLFQNIPGNKDQHLFASAVKHFTGK
Sequence
>29574..31016
MTYEVKSLNEECGVFGIWGHPDAAKLTYFGLHSLQHRGQEGAGILSNDQGQLKRHRDMGLLSEVFRNPANLDKLTGAGAIGHVRYATAGEASVDNIQPFLFRFHDMQFGLAHNGNLTNAASLKKELEQRGAIFSATSDSEILAHLIRRSHNPSLMGKIKEALSLVKGGFAYILLFEDKLIAALDPNGFRPLSIGKMANGAVVVSSETCAFEVIGAEWIRDLKPGEIVIIDDEGIQYDSYTDDTQLAVCSMEYIYFARPDSNIHGVNVHTARKRMGAQLAREFKHEADIVVGVPNSSLSAAMGFAEESGLPNEMGLIKNQYTQRTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGATEVHVAIGSPALAYPCFYGIDIQTRQELIAANHTVEETRQIIGADSLTYLSIDGLIESIGIETDAPNGGLCVAYFDGDYPTPLYDYEEDYRRSLEEKTSFYK
Sequence
>31053..32075
MTNKNAYAQSGVDVEAGYEVVERIKKHVARTERAGVMGALGGFGGMFDLSKTGVKEPVLISGTDGVGTKLMLAIKYDKHDTIGQDCVAMCVNDIIAAGAEPLYFLDYVATGKNEPAKLEQVVAGVAEGCVQAGAALIGGETAEMPGMYGEDDYDLAGFAVGVAEKSQIIDGSKVVEGDVLLGLASSGIHSNGYSLVRRVFADYTGEEVLPELEGKKLKEVLLEPTRIYVKAVLSLIKEELVNGIAHITGGGFIENVPRMFADDLAAEIDESKVPVLPIFKALEKYGQIKHEEMFEIFNMGVGLMLAVSPENVERVKELLDEAVYEIGRIVKKENESVIIK
Sequence
>32072..32617
MKKIAVFASGNGSNFQVIAEEFPVEFVFSDHRDAYVLERAKQIGVLSYAFELKEFESKTDYEAALVELLEEHQIDLVCLAGYMKIVGPTLLSAYEGRIVNIHPAYLPEFPGAHGIEDAWNAGVGQSGVTIHWVDSGVDTGQVIKQVRVPRLADDTIDRFEARIHEAEYRLYPEVVKALFTD
Streptococcus pneumoniae 2070109, whole genome shotgun sequencing
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 1998834 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: AMCSP04_000024 (Region 1)
Locus: AMCSP04_000024ORF Start: 18015
ORF Stop: 18248
Strand: Forward
Protein Sequence: MKEKEIFDRIVTIIQERQGEDFVVTESLSLKDDLDADSVDLMEFILTLEDEFSIEISDEEIDQLQSVGDVVKIIQGK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AMCSP04_000024, acyl carrier protein, phage(gi481019045), PHAGE_Vibrio_12B3_NC_021067
Homolog/Ortholog E-Value: 8e-08
Locus 2: AMCSP04_000025 (Region 1)
Locus: AMCSP04_000025ORF Start: 18321
ORF Stop: 18584
Strand: Forward
Protein Sequence: MADSGYQGLMKIYPQAQTPRKSSKLKPLTVEDKACNHALSKERSKVENIFAKVKTFKMFSTTYRNHRKRFGLRMNLIAGIINHELGF
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: AMCSP04_000025, IS1381 transposase protein B, phage(gi22537127), PROPHAGE_Strept_2603V/R
Homolog/Ortholog E-Value: 2e-37
Locus 3: AMCSP04_000026 (Region 1)
Locus: AMCSP04_000026ORF Start: 18787
ORF Stop: 18918
Strand: Forward
Protein Sequence: MNTKKMSQFEIMDTEMLACVEGGGCNWGDFAKAGVGGGAARGL
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AMCSP04_000026, bacteriocin-type signal sequence domain protein
Homolog/Ortholog E-Value: N/A
Locus 4: AMCSP04_000027 (Region 1)
Locus: AMCSP04_000027ORF Start: 19020
ORF Stop: 19145
Strand: Forward
Protein Sequence: MDFKSFIIGLVVGIFGPYMDDLIRKKFLKSSEKKTEKSVKK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AMCSP04_000027, pncF
Homolog/Ortholog E-Value: N/A
Locus 5: AMCSP04_000028 (Region 1)
Locus: AMCSP04_000028ORF Start: 19494
ORF Stop: 20021
Strand: Backward
Protein Sequence: MSRVRVQIMNQFHRKSHEYKAIKRYWKLIQQDSRKLSDKRFYRPTFRMHLTNKEILDKLLSYSQDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPLFQTVFKTFLKDKEKIVNALQLPYSNAKLEATNNLIKLIKRNAFGFRNFENFKKRIFIALNIKKERTKFVLSRA
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: AMCSP04_000028, transposase, phage(gi15927655), PROPHAGE_Staphy_N315
Homolog/Ortholog E-Value: 2e-16
Locus 6: AMCSP04_000029 (Region 1)
Locus: AMCSP04_000029ORF Start: 20230
ORF Stop: 20409
Strand: Backward
Protein Sequence: MTDIAHQLSISTSTVIRKLNDFHFECNFRNLPKIMSWDVETVRGVTVYKGKDELHCARF
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AMCSP04_000029, transposase
Homolog/Ortholog E-Value: N/A
Locus 7: AMCSP04_000030 (Region 1)
Locus: AMCSP04_000030ORF Start: 20491
ORF Stop: 20616
Strand: Backward
Protein Sequence: MKKYDFQKPSKIPYLEQLVCLLEFSLESVVSSAIIVQKYGR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AMCSP04_000030, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 8: AMCSP04_000031 (Region 1)
Locus: AMCSP04_000031ORF Start: 20630
ORF Stop: 20761
Strand: Backward
Protein Sequence: MEQLHFITKLLDIKDPNIQDLDIINRIHTKKSSPNWTMSSILP
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: AMCSP04_000031, transposase
Homolog/Ortholog E-Value: N/A
Locus 9: AMCSP04_000032 (Region 1)
Locus: AMCSP04_000032ORF Start: 21162
ORF Stop: 23315
Strand: Forward
Protein Sequence: MKFGKRHYRPQVDQMDCGVASLAMVFGYYGSYYFLAHLRELAKTTMDGTTALGLVKVAEEIGFETRAIKADMTLFDLPDLTFPFVAHVLKEGKLLHYYVVTGQDKDSIHIADPDPGVKLTKLPRERFEEEWTGVTLFMAPSPDYKPYKEQKNGLLSFIPILVKQRGLIANIVLATLLVTVINIVGSYYLQSIIDTYVPDQMRSTLGIISIGLVIVYILQQILSYAQEYLLLVLGQRLSIDVILSYIKHVFHLPMSFFATRRTGEIVSRFTDANSIIDALASTILSIFLDVSTVVIISLVLFSQNTNLFFMTLLALPIYTVIIFAFMKPFEKMNRDTMEANAVLSSSIIEDINGIETIKSLTSESQRYQKIDKEFVDYLKKSFTYSRAESQQKALKKVAHLLLNVGILWMGAVLVMDGKMSLGQLITYNTLLVYFTNPLENIINLQTKLQTAQVANNRLNEVYLVASEFEEKKTVEDLSLMKGEMTFKQVHYKYGYGRDVLSDINLTVPQGSKVAFVGISGSGKTTLAKMMVNFYDPSQGEISLGGVNLNQIDKKALRQYINYLPQQPYVFNGTILENLLLGAKEGTTQEDILRAVELVEIREDIERMPLNYQTELTSDGAGISGGQRQRIALARALLTDAPVLILDEATSSLDILTEKRIVDNLMALDKTLIFIAHRLTIAERTEKVVVLDQGKIVEEGKHADLLAQGGFYAHLVNS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AMCSP04_000032, ABC transporter, phage(gi9630145), PHAGE_Bacill_SPBc2_NC_001884
Homolog/Ortholog E-Value: 9e-81
Locus 10: AMCSP04_000033 (Region 1)
Locus: AMCSP04_000033ORF Start: 23328
ORF Stop: 24677
Strand: Forward
Protein Sequence: MKPEFLESAEFYNRRYHNFSSSVIVPMALLLVFLLGFATVAEKEMSLSTRATVEPSRILANIQSTSNNRILVNHLEENKLVKKGDLLVQYQEGTEGVQAESYASQLDMLKDQKKQLEYLQKSLQEGENHFPEEDKFGYQATFRDYISQAGSLRASTSQQNETIASQNAAASQTQAEIGNLISQTEAKIRDYQTAKSAMETGASLASQNLAYSLYQSYKSQGEENPQTKVQAVAQVEAQISQLESSLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELTLLAQKILEAESGKKVQGNLLDKGKITASEDGVLHLNPETSDSSMVAEGALLAQLYPSLEREGKAKLTAYLSSKDVARIKVGDSVRYTTTHDAGNQLFLDSTITSIDATATKTEKGNFFKIEAETNLTSEQAEKLRYGVEGRLQMITGKKSYLRYYLDQFLNKE
Homolog/Ortholog Species: Head protein
Homolog/Ortholog Protein: AMCSP04_000033, major capsid protein, phage(gi374531651), PHAGE_Pseudo_vB_PaeS_PMG1_NC_016765
Homolog/Ortholog E-Value: 5e-05
Locus 11: AMCSP04_000034 (Region 1)
Locus: AMCSP04_000034ORF Start: 24847
ORF Stop: 25554
Strand: Forward
Protein Sequence: MSKQLIYSGKAKDIYTTEDENLIISTYKDQATAFNGVKKEQIAGKGVLNNQISSFIFEKLNAAGVATHFVEKLSDTEQLNKKVKIIPLEVVLRNYTAGSFSKRFGVDEGIALETPIVEFYYKNDDLDDPFINDEHVKFLQIAGDQQIAYLKEETRRINELLKVWFAEIGLKLIDFKLEFGFDKDGKIILADEFSPDNCRLWDADGNHMDKDVFRRGLGELTDVYEIVWEKLQELK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AMCSP04_000034, phosphoribosylaminoimidazole-succinocarboxamide synthase, phage(gi514050949), PHAGE_Synech_S_CAM8_NC_021530
Homolog/Ortholog E-Value: 1e-43
Locus 12: AMCSP04_000035 (Region 1)
Locus: AMCSP04_000035ORF Start: 25756
ORF Stop: 29481
Strand: Forward
Protein Sequence: MDKRIFVEKKADFQVKSESLVRELQHNLGLSSLKSIRIVQVYDVFDLAEDLFAPAEKHIFSEQVTDHVLDEVSVQADLANYAFFAIESLPGQFDQRAASSQEALLLLGSSSDVTVNTAQLYLVNKDIDATELEAVKNYLLNPVDSRFKDITTGIAKQEFSESDKIIPKLTFFESYTAEDFARYKAEQGMAMEVDDLLFIQDYFKSIGRVPTETELKVLDTYWSDHCRHTTFETELKHIDFSASKFQKQLQSTYDKYIAMREELGRSEKPQTLMDMATIFGRYERANGRLDDMEVSDEINACSVEIEVDVDGVKEPWLLMFKNETHNHPTEIEPFGGAATCIGGAIRDPLSGRSYVYQAMRISGAGDITAPISETRAGKLPQQVISKTAAHGYSSYGNQIGLATTYVREYFHPGFVAKRMELGAVVGAAPKGNVVREKPEAGDVIILLGGKTGRDGVGGATGSSKVQTVESVETAGAEVQKGNAIEERKIQRLFRNGNVTRLIKKSNDFGAGGVCVAIGELADGLEIDLNKVPLKYQGLNGTEIAISESQERMAVVVRPEDVDAFVAECNKENIDAVVVATVTEKPNLVMHWNGETIVDLERRFLDTNGVRVVVDAKVVDKDVKLPEERQTSAETLESDTLTVLSDLNHASQKGLQTVFDCSVGRSTVNHPLGGRYQLTPTEASVQKLPVQHGVTHTASVIAQGFNPYVAEWSPYHGAAYAVIEATARLVAAGANWSKARFSYQEYFERMDKQAERFGQPVAALLGSIEAQIQLGLPSIGGKDSMSGTFEELTVPPTLVAFGVTTADSRKVLSPEFKAVGENIYYIPGQALSAEIDFDLIKKNFAQFEASQADHKVTSASAVKYGGVVESLALATFGNYIGAEVTLPELKTALTAQLGGFVFTSPEEIAGVEKIGQTKADFTLTVNGVKLDGHKLDSAFQGILEEVYPTEFTQAKELEEVPAVASDVVIKAKEKVEKPVVYIPVFPGTNSEYDSAKAFEKEGAEVNLVLFVTLNEEAIVKSVETMVDNIDKTNILFFAGGFSAADEPDGSAKFIVNILLNEKVRVAIDSFIARGGLIIGICNGFQALVKSGLLPYGNFEDANSTSPTLFYNDANQHVAKMVETRIANTNSPWLAGVQVGDIHAIPVSHGEGKFVVTAEEFAELRDNGQIFSQYVDFNGKPSMDSKYNPNGSVHAIEGITSKNGQIIGKMGHSERYEDGLFQNIPGNKDQHLFASAVKHFTGK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AMCSP04_000035, putative phosphoribosyl formylglycinamidine (FGAM) synthase II, phage(gi149882852), PHAGE_Microb_Min1_NC_009603
Homolog/Ortholog E-Value: 4e-41
Locus 13: AMCSP04_000036 (Region 1)
Locus: AMCSP04_000036ORF Start: 29574
ORF Stop: 31016
Strand: Forward
Protein Sequence: MTYEVKSLNEECGVFGIWGHPDAAKLTYFGLHSLQHRGQEGAGILSNDQGQLKRHRDMGLLSEVFRNPANLDKLTGAGAIGHVRYATAGEASVDNIQPFLFRFHDMQFGLAHNGNLTNAASLKKELEQRGAIFSATSDSEILAHLIRRSHNPSLMGKIKEALSLVKGGFAYILLFEDKLIAALDPNGFRPLSIGKMANGAVVVSSETCAFEVIGAEWIRDLKPGEIVIIDDEGIQYDSYTDDTQLAVCSMEYIYFARPDSNIHGVNVHTARKRMGAQLAREFKHEADIVVGVPNSSLSAAMGFAEESGLPNEMGLIKNQYTQRTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGATEVHVAIGSPALAYPCFYGIDIQTRQELIAANHTVEETRQIIGADSLTYLSIDGLIESIGIETDAPNGGLCVAYFDGDYPTPLYDYEEDYRRSLEEKTSFYK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: AMCSP04_000036, hypothetical protein FR483_N035R, phage(gi155370133), PHAGE_Parame_bursaria_Chlorella_virus_FR483_NC_008603
Homolog/Ortholog E-Value: 1e-20
Locus 14: AMCSP04_000037 (Region 1)
Locus: AMCSP04_000037ORF Start: 31053
ORF Stop: 32075
Strand: Forward
Protein Sequence: MTNKNAYAQSGVDVEAGYEVVERIKKHVARTERAGVMGALGGFGGMFDLSKTGVKEPVLISGTDGVGTKLMLAIKYDKHDTIGQDCVAMCVNDIIAAGAEPLYFLDYVATGKNEPAKLEQVVAGVAEGCVQAGAALIGGETAEMPGMYGEDDYDLAGFAVGVAEKSQIIDGSKVVEGDVLLGLASSGIHSNGYSLVRRVFADYTGEEVLPELEGKKLKEVLLEPTRIYVKAVLSLIKEELVNGIAHITGGGFIENVPRMFADDLAAEIDESKVPVLPIFKALEKYGQIKHEEMFEIFNMGVGLMLAVSPENVERVKELLDEAVYEIGRIVKKENESVIIK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AMCSP04_000037, phosphoribosylaminoimidazole synthetase, phage(gi514050953), PHAGE_Synech_S_CAM8_NC_021530
Homolog/Ortholog E-Value: 9e-66
Locus 15: AMCSP04_000038 (Region 1)
Locus: AMCSP04_000038ORF Start: 32072
ORF Stop: 32617
Strand: Forward
Protein Sequence: MKKIAVFASGNGSNFQVIAEEFPVEFVFSDHRDAYVLERAKQIGVLSYAFELKEFESKTDYEAALVELLEEHQIDLVCLAGYMKIVGPTLLSAYEGRIVNIHPAYLPEFPGAHGIEDAWNAGVGQSGVTIHWVDSGVDTGQVIKQVRVPRLADDTIDRFEARIHEAEYRLYPEVVKALFTD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: AMCSP04_000038, cyanobacterial phosphoribosylglycinamide formyltransferase, phage(gi472340960), PHAGE_Synech_S_SKS1_NC_020851
Homolog/Ortholog E-Value: 2e-25
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download