Submission Results
Sequence Name: Not Available
GenBank Accession Number: ALIV01000006.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: ALIV01000006.1.PHASTER.zip
gi|00000000|ref|ALIV01000006.1| Pectobacterium atrosepticum ICMP 1526 UO22, whole genome shotgun 239945, gc%: 51.77%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 10.6Kb | incomplete | 50 | 7 | 181003-191667 info_outline | PHAGE_Klebsi_ST16_OXA48phi5.4_NC_049450(2) | 44.47% | Show info_outline |
Region DNA
>1 181003-191667 AGTTTTTCATCAGAAACCAGAGCGAAGGTGAGCGCCTTCGCTTTTTTTGCACCAAAAACC CCCCGGTTCTCCCTTGCCAGGTTCTCAGCGTTCGTGCATAACTGCCGAAGCTGGAGATAC GATGCCTGAAATCATTATTACGAACTCGTACTCGCTACAAAACAATATTCATCACGAAAC GACACTGGATAAACTCTATGCTTTTGTTACTCGTTTTGGCTGTGATTGCAGTCGCCGTTT ACGGCTGGTTAAAACAGCCGCAATACGTTTCACCAGAGGTAAAACCTCAACCGGAAAACC CACTCTTTCGCGATGGCGCGTTTCATAACCCGGTAGCCCGCCCGACGGTAGATAGCCAGA ACCGGTTCGGGTTGCTGTACCGCTTTCTTTTCGAGAAAGACGCTGGCGCGTTACCCGATA CCCACCTGCTGTCGGAAAAGACCGATCTGCATCAGTTAAGTAAAACGGATAACGTCATCA TCTGGATGGGGCATTCCAGCTACTTTATTCAATTGGATGGGAAAACCTTCCTGCTGGATC CGGTATTTAGTGACAACGCCTCGCCGGTGCCGCGTACTAATATCGCCTTCAAAGGCAGCA ATGTGTATTCACCGGAAGACATTCCAGAAATCGACTATCTGTTGATCACTCACGATCACT GGGATCATCTGGATTACCCTACGTTGAACGCGCTACGTGGAAAAATCCGTCGTATTGTCA CGCCGACCGGTGTGGGTTCCTATTTTGTAAAATGGGGCTTCCCTCGGAAAGATATTACGG AAGGTGACTGGTTCAGCAGCTTGAAAGAGAACGGGGTGGAAATTCACGTGCTGCCGACGC AGCATTTTTCCGGTCGACTCCTCAAGCATAACCAAACGCTGTGGGGCTCATTTGCGCTGA TAACGGCGCAGCATCGCCTGTATCTCGGTGGTGACAGCGGCTATGGTGCGCACTACAAAG AGATCGCCGAGCGTTTGGGTGGATTCGATATCGCGATACTGGAATGCGGCCAATACGACA GTGACTGGCCCTACGTTCACATGACGCCGGAAGAGAGCGCACAGGCGGCGAGTGACTTGC ACGCCAAAGCGGTGTTACCGAGCCACAACAGCAAATTTAAGCTGGCGCACCACCGCTGGA ACGATCCATTGGAGCGCATTTCTCAAGCCAGCGAAAATCAGGGCTGGCGATTAATGACGC CCCGTATTGGTGAACGTGTACAGGTCGATAATCCGCAGCAGATTTTTAGTCAGTGGTGGT AATGAGTTGAACGAGAGTTAAACGCATTTATCAACATTTTTGCCGCGTGGCGAATGGATA GGGTATTCGCCATCAACTAAATGTTTTCTCACTCAGGCAGTTAATGAATGCCCGAAGTTT GGGGGACAGGTCGCGGCGGAAAGATCCCAACTGACGACGTTTGAGTCCTGAATCCGCAAT ACCTGCTCATTATCCGGTATGAACGGGAGCGATATGGTATCGACATTGGGGCCAGGATAA ATCAGAGATCTGGACGTAGTTCAGTCGAGAGCGCGCAGCAAACTCTCCAAAGACATTGCC GCGTTTGTCGCTGCCGCATCGGTGGTCCCCCGATAGAGGTTCAGATGAATGATACGACTG TCGCCGACGGCAAGTTTGAGGGGGACCAGTAAACCGTTACCCAGATCGCCCCTTATCGTA TCGACAGGCAGCCAGCCGCGCTGCGTATCAACGACAATGGCAACATACTGATCGCCTAAC TGCTTCTGCGATCCATACATCTGCACAATCCGTTTTTTGGCAGCCGCGTACTCTTTATTT AGATCATCTTCCGCCAATTTTTTCTGCTGCACCATACACTGATAAAGTGCACCATCTGAA GGCTGTTTGGAGCAAATATCGTCAGCAAAAGCCGAAGTAATTCCACCTAGTGCCAATATC GTTACTACCAATCCATCAGCCAACTTCATAAAAAATCCTGTGCCAAAATTTATTGATTCA GGGGCAGCTGACGGCAGCAAAATCACTTGCTGCCGTCATTCATTCCGGCCTGTTATTACT GATAAGGGATCAGTTTTAACTGCTCAATACGCTGCTTATCGATATCGCTAATACAGTTAT TGGTCAGTGTGTCATGAGCTGTGGTCCCCTCTTCAGCGAGGAAAGCCTGCATTTTGCACT GACTATCACGGTATTTTAGCCAGCCACGCTGCGAATCCACCAGGTTCTGCTGATACTCTT TTTGCAGCTTATCATCCGCTTTGTAAGTCGTTGTGATACGACCCTTGGCTTCGCTCCAAG CTTTATTTAATGCCTGTTCAGTGGCCTCTTTGCCCTGTTTGGCACAACTGTCAACTTCTG CACTTGCACTAGGATTTGCACAATCAGCGGCCCAAAGCGAAGTGCTGACACTCATGCCAG CAAGCATTGCGGCAGCGATTAAAATTTTCTTCATAACACGCCCTTTAACGGTTTTTCTTC AAGTAACCAACCCGGTTACGTCCTTTTTCATAACTCATCATAGTAGTACTGTGTTCGATA TAATAAATGAGTGTATCCACATCATTTGTCATGCCAGCTTTCATCGGTACTTCACCTTTG GTGAATCCCTGGTAGACAAAGTCGACCAGAAGATCGCTAATCGCCGATTTTAAACTATCC CATTGAGTACGCTCAGCATATTTCCCAGTCCACTGGTCATAGTTGTTACGGGCTCTCTGA ATATAATCTGGATAGATCAGCTTAAAAAGCCGTATCTGCTGCTGATGACTGATGGTGCCA GCACTGTTGCGATTATGGATAACAAACTGGTTAGCCTGTTCACCTCTTTTGCCTGCAAAC GCGCTGTACGAAGACGGCCACATCACGGAGGCGGCCTGCATGGCGCACGCCCGGAGAAAA ATCCACGACGTTCACGTTCGTACCCCGACCGACATTACCACCGAAGCGCTGAAGCGCATC GGTGAGCGGTACGCCATCGAGGCGGAAATACGTGGCAGCCCGGCAGATGAACGACTGGCG ATCCGGAAAGAGAAAACTATCCAGCTGATGCAGTCACTGTACGACTGGATACAGGTGCAG ATGACGCTCGGATACAGCGAAGGCGTTCTCGTACCTGCTGAAGCAGTGGGATGCACTCAA CCTGTACTGCGGCAACGGCTGGGCCGAAATAGATAACAACATCTCGGAGAACGCCCTGCG GGGCGTTGCCCAGGGCCGTAAAAACTGGCTGTTTGCCAGTTCAGACAGCGGCGGTGAGCG GGCCGCGGTGCTTTACTCCCTTATTGGCACCTGCCAGCTTAACGGCAATAGCGATCTTGC CTTTCACCTTCGGGTGTAACTTGGTAAGCCAGATATCAAGCGCTTCCGGCGTATGTTTAA TCACTTGGAATATGCGCTCACTGTTTTTAAAGTGAACGCAGACATCGTGCTTTTTATCCG CCCAGCCCAGACCAACATGAATAGCCAGACGGCTAATGCCGCTTTAAAAAGAATTGGCTA CGGTGGTAAGTTAGTTGCGCATGGTCTAAGGATCGTTGCCAGTACTGCATTAAATGAGGC TGAATTCAATAGCGATGCTATTGAAGTTTCTTTAGCACATGCCGATAAAAATGAAGTAAG AAGAGCTTACAACCGCTCCATCTATCCCGATATCAGAACAGTGATGATGGACTGGTGGGG AAATTTTGTGACTAAGAACTCTATATAAGGAGATCAAATGCTGCGTGACATGGTCGATGT TACGGATGATAAAAATCTAACACAAGGCACAATTTTCAATTGTGCCTATTGCGCTTCGTA CCCCAACAATGAAACGTTAGGTTTAGTTATAACCGCAAGATGTGACATAGTTAATAAAGA TAAGGTTGATTTTTATAATTTCATACCGGCAATTCCATTTGAAATTTGAAATTTGAAATT TGAAATTTGAAATTTGAAATTTGAAATTTGAAATTTGGAAAGAGAAAGGGCTGTTACCTC TTATAAAAAAACAAGTTTTTAAAAATTTAGAACAGCAATATTCAGTGTTGCTAACTACAG CAAGTTTTTCATCAGCTAATATTGAAACCTATGGCTTTGATAGGATTTATGATATTATCG TTGAAAAAAATTGCTTAACCAGAAACAGATAACCCGCCTAAATAGTGTAAAAGAAAAAAT AAATTGCCTAGAGCAAAACTCTTCTTATTCACAGTTATTAAGTTATTTTCATGATGAAGC AAGAAAAATAATTTGTGACATTATTGAAAATAAAAACCCCGACTATTTTTTCATTGATGA CGTTCTTGGCTATAATTCAGTATTAGTGAACTTAAGAGAAATTTATGAATTTAATCTTCT TACAGCAAAAAAAATCCCTAATGGAATAGAGCTTGATAATGGCGAATTACATCCTGGTCT AAATTTAAATATCTCCAATAAATTTTGTAGTATTGTAGGTCAATTGAAATCACCGTTTAT AGAATTATTAATGCAACGTTTCACAAATAACTTTGTTAGAGTAGGTGTAGCTAATCACCG CTCGGCATTATTAACCAATATCATGAGCGTATAAATATGAGTTTCATAGCCATTGAAAGT AATGCAGCACGAAAAATCGTTTCTGAAAGAATGCTTCAGTCAGCAGATTATGATAAAGGT CAGATACTTGCTGATTTATTGAAAGACAGAAAAATACTTGATTTCAGCCTCGAAGTTAAA GCTGTCTCTATCAATACTGGTATATATATATTAAGCAAAAACCCAAATAAAAAGAATATG TTAATATTCGACACAACGACCTTTGATGGTTTTAAAAAAAACAGTAATGAAATTATCACG ATAATTCAGAAATCTTGCAGGCTGGCGATAAAATTGTGGGATAAGATTGGGCATAGTCCA TGTGAGAAAATAATTAGTGGTTCTTCTTTAATTGCTTTATTACCTCTTTCATTTACTACT GGAAAATCCTATAAAGTCATACTTGATAAATCTCCTGATAAGGAGCGACAAGAAAAAAGG AACGAAAGTAGTTTTTTAATATTTCATGACGGGTATGACACTACCGATGCGGTGCCAAAA TTAGCTAATTTCCGCAAAGCTAAAGAAGGGATACATGATATTGATACGCTTTCTCTGTTT AAAATACCCGACATAGAAGAGGAGAATGTCACTACATATCTGAACATAAATGAAACTGAT AATACCAATACTCAATCAAACCCACATATGGGGTTAGATTATTGGGAAAAAAATCTTACT GAAAGTCAAAAAAGATTTGTTTATAGCGAAAGCTATGGGCCGGATATTCTTAAAGGGGCA GCAGGAACAGGAAAAACTTTAAGTTTAATATTGAGATGTGTAGTTCAGCTTCAAAATTCA AAAAAAACAGACAATCTGCTACGAGCTATTTTTATAACCCACAGCATAGCAACTAAGACT AATATAGAAAACCTTATAGCATCTAATGGTGGCTCTGAATTTATTGACTCAGAACATCAG CAGTCTGTTGAAGTGACAACTTTACAGGAATGGTGTATCAAAAATTTAGGTAACAGAATA GAAGCAACAGAGTATCTTGATAGCGATGCTTTTGAATCTAAGCAGTTACAGCTCTTATAT ATAAACGAAGCTCTTGAAGATTTTTTGATAAATGATTACGCAGGATCTGTCAACTTTATT TCCCCCGCACTTAAAGATTTTTTCGGAAACAATGATCCATGGGGGATTTCTATTTTGCTT CAAGAGGAGATCTCTACATACATTAAAGGGCGTGCTGGTGATGATCTTAAAACTTACGCC GCTCTTCCTCGTAGTAAAAATGTCATACCATTAGAAAATGAGGATGACTTTAAAACTATC TTCTCAATTTATAATAAATATCAAGATAAACTTATCACTTTAGGTTTGTTTGATAGTGAT GATATAACCCTATCCGCTCTTAAAGAAACCTCGACTCCAATTTGGAAGCGCAGAAGAATA AATGGCGGTTTTGATATCATGTATATCGATGAAACTCATCTTTTTAATATTAATGAGTTG AGTTTATTCCACAACCTTCTTAAACCAAATTCAAACCATATTGTATTCACAATGGATCGA AGCCAAGCTTCTGGGGACACGACTATAACTAAAGAAGATGTTGCAAAAGAGCTTGATGCA ACTCTAGCACATGAGCATGGTTTAAATGCTGTTTTCCGCTCATCGGAGCATATTATAAAC TTAGCAAGCTGTGTGTTAGCTTCAGGTGCTACCTTATTCCAAGAGTTAGAAAATCCTTTA GCTGAGTCAATGACAGGCCACACGTCCCTTATTGAGGAAAAATGCGACATTCCTTATATT ATAAGCAAACAAAGATCATCAGAAGTTTATAGATCCACATTTGCTTTGGCTGATTATATA TCGCAAAATTCTGGCATTAAACGAAGTGACATTTTAATAGTTCCGTGCACCGATAGCACA TTGAAAGATCTTAAAAATCATGCAAATAAACATGATATAAACCATATTTCTATAGAAAGG CGCGGGGATAATCTTGCTGTATTTAAAGCTTCGGAAAAAAACTTATATGTAATCGGAGGT ATGGAATACATCGGAGGGTTAGAGTTTTCCGCAGTGATAATTGTAGGCGCTGACTCAGAC AAATTCCCTGAGCAATCAACTTATAATGGAGAATCACTCCATTTCATCAATTACTCTTCT TTCAATAAATTATATGTTGCGATTACAAGAGCTAAATATCAAGTAGCTTTCGTAACTGAA AAAACACAAAAAATTAGCCCCTTGCTTGAAACAGCCTTTAGAGAAGGGCTCGTCATACAG AATGATGAACTTTCAAACATCATATAATATCAACGCTGTGCGTGAGAAATGTTTACTCTT AGCGCGCAATGCTATCTCCGCCACGCCTGCCCGCTTCATGGGTGGGGTTTTATGCAGGTG CATGAGCACCCCCGAGCCGCGCCGGCTCTGGGGTGTTGAGGTGTGAAAAATACGGGGTTT TACATGCAAAACCATGCACCGTAATGCATGGTTTAATTGAATTAAATCGCGGTATTTTAT GGCTGATTTTAAGTGGGTTTTTGCTGACTCAGTTCTGCCTGCCGGTGCGCGTAAACACGG TTCTGTACCGGGGTATATTTCTGCTGATTATCTACCCGTGAAGCCGTATCAGGCCTGAAT CCGATGGCCGTTAAAATGTCGTTATTTTCAGCCGAATAATTGATTTCATTACTTGTCGCC AGATAGCCCCGCAGTGCTTCACCGATGTAATGTGTCGCCCGCCGTATCGCCAGCTCTCTC ACTGCCGCAGTACCCATTAATTCCGGTGCCAGCGTATTGACCAGTGCCGCCCCGTTCTGC TCGCCAGAGTCTTTCTCATACTGACCTTGACTACTGGATACATGGTATCGGCTCATGGAT ATGCCCTGTGTTATTAGAGGAATGGAAAAACAGAGGGATTATAACGCTGGATAAGTAGAG CAAACAATATTTGTAAAATCAGATAGTTACTAAAGTATAGGTTAAAATGTAGTTTTTATA TTATGGTGGGAAATAATCGTTAGTAATCAGTGTTAACGCACCAATGCATCATCGTTTACG AAACATCAGCACTGCTGCGAGTGCTGCTTACCCATCCATCAAGCTTATCAGCCCAATCCT GCATCATCACTTTGCGTTCATCAAGATAAGTCGCGTGGTTATACGTGCGACGAATATTGT TGGTATCAGCGTGCGCAAGCTGAGCCTCGATAGCATCAGGTCGATAGCCCATCTCGTTTA AACGGGTACTTCCTGTGGTTCGGGTTGCATGTGGGCTATAAGTGCCACTCCAGCCGAGGC TTTTAAGTAGCTGACGCAGAGAGTGCGATGTCATTGGACCCAGCGGATTATCTCTGCCCG GGAAAAGGTGCTGCCGATGCCCGATTAATCCCTGTAGTGTTCTGAGCATTTTGACAGCTT GGAAGGGTAGGGGAATAACGTGTTCTCTTCGGGCTTTCATTCGCGTAGCCGGAATGGTCC ACAGGGCGTTATCAAGATCGAATTCTGTCCATTCTGCTTCGGTGGCTTCTGCAGGACGCG CCAATGTCCACCACATAAGCCACATGCAATAGTTAACCTGGTACGAGCCACGACTATTGT CAAAACAGCTTAATAACTTTCCGATTTGCTGAGGATTTAGTGCCTGTTTGTGCTGTGTCT TATTGGCCGGAAGGGCCTTACGCACAGGCCATACGGGATCGCTATCAGCTCTAAGCGTCG CGACTGCCAACTCAAAAACTGATGAAATGGTGCGACGGGCTTCAGCGGCAACTGTTGGCG CTCCTCGTTTAGCGGTTTCCTGAAGAATTTTAAGTATATGGTGTGGAGTGATCTCTCTGA CTGGGAGCTTACCGATTGCGGGAAAAACCACACGTTCAAGCATATCCAGTCGCCGCGTTT TGGTGATTTCGGCCCAGTCTTTCATCTGTAACCACTCTTTGGCGATAAGCTCAAAGGTGT TGGAGGCGTAGTTGACCTTGCGGATTTTATCTAGTTGCCTAGCCTGTGCCGGGTTGACTC CCTCTGCAACTTGCTTACGCGCTTGATTGCATTTCTCCCGCGCCTCGGCAAGTTTTACCG CTGAGTACTCACCCAACGCGAACATGAAGATGGAAATTGATTGTACTCATCCTTGTACGC ATTTTTGACTGCGCTGTCACGAGATGAGTTGAGACACTATGAAAAGGAAAATCCACGCAA CTGCGTGGATTTTATGGGGTTTTTAGTCTTCATGCGATGCTTTGAGATACCATGAGACAA CAGAAATCATTTAGACGTTAAACAGGAAGTTCATCACGTCGCCATCTTTTACGATGTAAT CTTTGCCTTCCGAACGCATTTTTCCGGCTTCTTTCGCGCCTTGTTCACCTTTGTAAGTGA TGAAGTCTTCATAGGCGATAGTTTGTGCGCGGATGAAGCCTTTTTCAAAGTCGGTGTGAA TTTTACCTGCGGCCTGTGGGGCGGTGGCGCCGACAGGGATTGTCCATGCGCGAACTTCTT TCACGCCAGCGGTAAAGTAGGTTTGCAGGTTCAGCAGTTCATAGCCTGCGCGGATAACGC GGTTCAGACCCGGTTCTTCCAAACCTAACTCGGTCATGAATTCTTCACGATCGGCATCAT CCATTTCTGCAATGTCTGATTCAACGGCGGCACAGACGGCTACGACGACAGAACCTTCAG CAACAGCGATTTCACGCACTTTATCGAGGTAAGGGTTATTCTCGAAACCGTCTTCGTTGA CGTTGGCGATATACATCGTTGGCTTCAGCGTCAGGAAGCTCAGGTAGCGGATGGCTGCTT TATCATCATCGCTTAAATCCAGCGAGCGCAGCATGCCAGCGTTTTCCAACTGCGGTAAGC ATTTCTCCAGTGCAGCCAGCTCAGCTTTAGCATCTTTATCGCCGCCTTTAGCTCTCTTCT GCACTCGATGAATGGCACGTTCGCAGGTATCGAGATCAGACAGTGCTAATTCAGTATTGA TGACTTCGATGTCATCAGCCGGATCAACTTTATTATTGACGTGGATGATGTTGTCGTTCT CGAAGCAGCGTACAACGTGGCCAATGGCTTCCGTTTCACGGATGTTGGTCAGAAACTGAT TACCCAAACCTTCACCTTTGGACGCGCCTTTTACCAGACCAGCGATATCAACAAATTCCA TGGTGGTAGGGAGGATGCGCTGCGGCTTAACGATTTCAGCCAGCTTGTCCAGACGTGGAT CGGGCATCGGCACTACGCCGGTGTTCGGCTCGATGGTACAAAACGGGAAGTTGGCTGCTT CGATGCCGGCTTTGGTCAGCGCATTGAACAGAGTGGATTTACCGACGTTAGGCAGCCCAA CGATACCGCATTTGAATCCCATGTTTATATCACCTTAAATAACTTATTAATCAGGCAATT ACTTTATCTTGCCTGTCAGAATGGAAACATTTCGGCCGATTATACACGGAATGGTGATTT ATCTCGATCTACCATCCGCATTCTGACCAGATTATGCCGCTTTGAAAGCATGTAAGCGAT TCATCGCTTTTATCATGTCTTCTTTCATAAGAATTTCTGTGCAGCGCACGGCTTCGTCAA TGGCCTCGTCGATCAGAGTCTGCTCGCTCATCGGTGGCTTACCCAACACAAAACCGGTCA CTTTACTTTTATCACCCGGATGACCGATACCAATGCGCAAACGATGGAAGTTAGGGTTAT TACCCAATTTACTGATGATGTCTTTAAGCCCGTTATGACCGCCGTGTCCGCCACCCAGTT TAAGTTTGGCAATCCCCGGTAATAAATCCAGTTCATCGTGTGCAACCAGAATTTCATCGG GCTGGATGCGGTAGAAGGTGGCCATTGCCGCGACGGCTTTTCCGCTTAGGTTCATGAACG TGGTGGGAACCAGCAGACGTACATCTTGCCCAGCCAGGTTCAGACGGGAGGTGTAACCGA AAAATTTGCTTTCTTCTTTTAGCGACTGGCGATAAGACTCAGCCAGACGATCGACAAACC AGGCACCCGCATTATGACGAGTGGCGGCATATTCCGCGCCAGGATTAGCCAGGCCGACAA TTAATTTAATGCTGCTCACGGTATATTCCAGATTACGTGCTTAGACTTACGCAGGGTAGC GTGATTATGAGAACGCTAGTTTACACACCGCATGGTGGATAGCCA
Region Details
| Region | 1 |
| Region Length | 10.6Kb |
| Completeness(score) | incomplete(50) |
| Specific Keyword | tail,transposase,integrase |
| Region Position | 181003-191667 |
| # tRNA | 0 |
| # Total Proteins | 7 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 85.7% |
| # Bacterial Proteins | 1 |
| Attachment Site | yes |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Klebsi_ST16_OXA48phi5.4_NC_049450(2) PHAGE_Pseudo_F116_NC_006552(1) PHAGE_Stx2_c_Stx2a_F451_NC_049924(1) PHAGE_Stenot_S1_NC_011589(1) PHAGE_Stx2_c_1717_NC_011357(1) PHAGE_Escher_SH2026Stx1_NC_049919(1) PHAGE_Entero_P4_NC_001609(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 28.57% |
| GC % | 44.47% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|ALIV01000006.1| Pectobacterium atrosepticum ICMP 1526 UO22, whole genome shotgun 239945, gc%: 51.77%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 11 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 181003..181015 | attL | 0.0 | Showinfo_outline |
| 2 | 183862..184158 | PHAGE_Stx2_c_Stx2a_F451_NC_049924: tail assembly protein; KCQ_04441; phage(gi100053) | 6.93e-20 | Showinfo_outline |
| 3 | complement(184223..184366) | transposase; KCQ_04446 | 0.0 | Showinfo_outline |
| 4 | 184367..184690 | PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; KCQ_04451; phage(gi16130540) | 8.37e-30 | Showinfo_outline |
| 5 | 184700..184891 | PHAGE_Klebsi_ST16_OXA48phi5.4_NC_049450: hypothetical protein; KCQ_04456; phage(gi100016) | 3.27e-33 | Showinfo_outline |
| 6 | 185025..185037 | attR | 0.0 | Showinfo_outline |
| 7 | 185539..187809 | PHAGE_Klebsi_ST16_OXA48phi5.4_NC_049450: hypothetical protein; KCQ_04461; phage(gi100015) | 0.0 | Showinfo_outline |
| 8 | 188006..188018 | attL | 0.0 | Showinfo_outline |
| 9 | complement(188031..188378) | PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; KCQ_04466; phage(gi9627520) | 3.44e-23 | Showinfo_outline |
| 10 | complement(188558..189607) | PROPHAGE_Escher_CFT073: putative prophage integrase; KCQ_04471; phage(gi26250313) | 8.67e-70 | Showinfo_outline |
| 11 | 191667..191679 | attR | 0.0 | Showinfo_outline |
Sequence
>181003..181015
AGTTTTTCATCAG
Sequence
>183862..184158
PectobacteriumatrosepticumICMP1526MAHARRKIHDVHVRTPTDITTEALKRIGERYAIEAEIRGSPADERLAIRKEKTIQLMQSLYDWIQVQMTLGYSEGVLVPAEAVGCTQPVLRQRLGRNR
Sequence
>complement(184223..184366)
PectobacteriumatrosepticumICMP1526MIKHTPEALDIWLTKLHPKVKGKIAIAVKLAGANKGVKHRGPLTAAV
Sequence
>184367..184690
PectobacteriumatrosepticumICMP1526MEYALTVFKVNADIVLFIRPAQTNMNSQTANAALKRIGYGGKLVAHGLRIVASTALNEAEFNSDAIEVSLAHADKNEVRRAYNRSIYPDIRTVMMDWWGNFVTKNSI
Sequence
>184700..184891
PectobacteriumatrosepticumICMP1526MLRDMVDVTDDKNLTQGTIFNCAYCASYPNNETLGLVITARCDIVNKDKVDFYNFIPAIPFEI
Sequence
>185025..185037
AGTTTTTCATCAG
Sequence
>185539..187809
PectobacteriumatrosepticumICMP1526MSFIAIESNAARKIVSERMLQSADYDKGQILADLLKDRKILDFSLEVKAVSINTGIYILSKNPNKKNMLIFDTTTFDGFKKNSNEIITIIQKSCRLAIKLWDKIGHSPCEKIISGSSLIALLPLSFTTGKSYKVILDKSPDKERQEKRNESSFLIFHDGYDTTDAVPKLANFRKAKEGIHDIDTLSLFKIPDIEEENVTTYLNINETDNTNTQSNPHMGLDYWEKNLTESQKRFVYSESYGPDILKGAAGTGKTLSLILRCVVQLQNSKKTDNLLRAIFITHSIATKTNIENLIASNGGSEFIDSEHQQSVEVTTLQEWCIKNLGNRIEATEYLDSDAFESKQLQLLYINEALEDFLINDYAGSVNFISPALKDFFGNNDPWGISILLQEEISTYIKGRAGDDLKTYAALPRSKNVIPLENEDDFKTIFSIYNKYQDKLITLGLFDSDDITLSALKETSTPIWKRRRINGGFDIMYIDETHLFNINELSLFHNLLKPNSNHIVFTMDRSQASGDTTITKEDVAKELDATLAHEHGLNAVFRSSEHIINLASCVLASGATLFQELENPLAESMTGHTSLIEEKCDIPYIISKQRSSEVYRSTFALADYISQNSGIKRSDILIVPCTDSTLKDLKNHANKHDINHISIERRGDNLAVFKASEKNLYVIGGMEYIGGLEFSAVIIVGADSDKFPEQSTYNGESLHFINYSSFNKLYVAITRAKYQVAFVTEKTQKISPLLETAFREGLVIQNDELSNII
Sequence
>188006..188018
AAATCGCGGTATT
Sequence
>complement(188031..188378)
PectobacteriumatrosepticumICMP1526MSRYHVSSSQGQYEKDSGEQNGAALVNTLAPELMGTAAVRELAIRRATHYIGEALRGYLATSNEINYSAENNDILTAIGFRPDTASRVDNQQKYTPVQNRVYAHRQAELSQQKPT
Sequence
>complement(188558..189607)
PectobacteriumatrosepticumICMP1526MFALGEYSAVKLAEAREKCNQARKQVAEGVNPAQARQLDKIRKVNYASNTFELIAKEWLQMKDWAEITKTRRLDMLERVVFPAIGKLPVREITPHHILKILQETAKRGAPTVAAEARRTISSVFELAVATLRADSDPVWPVRKALPANKTQHKQALNPQQIGKLLSCFDNSRGSYQVNYCMWLMWWTLARPAEATEAEWTEFDLDNALWTIPATRMKARREHVIPLPFQAVKMLRTLQGLIGHRQHLFPGRDNPLGPMTSHSLRQLLKSLGWSGTYSPHATRTTGSTRLNEMGYRPDAIEAQLAHADTNNIRRTYNHATYLDERKVMMQDWADKLDGWVSSTRSSADVS
Sequence
>191667..191679
AAATCGCGGTATT
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 239945 bps
Phages: 1
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Locus 1: attL (Region 1)
Locus: attLORF Start: 181003
ORF Stop: 181015
Strand: Forward
Protein Sequence: AGTTTTTCATCAG
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 2: KCQ_04441 (Region 1)
Locus: KCQ_04441ORF Start: 183862
ORF Stop: 184158
Strand: Forward
Protein Sequence: MAHARRKIHDVHVRTPTDITTEALKRIGERYAIEAEIRGSPADERLAIRKEKTIQLMQSLYDWIQVQMTLGYSEGVLVPAEAVGCTQPVLRQRLGRNR
Homolog/Ortholog Species: Tail protein
Homolog/Ortholog Protein: KCQ_04441, tail assembly protein, phage(gi100053), PHAGE_Stx2_c_Stx2a_F451_NC_049924
Homolog/Ortholog E-Value: 6.93e-20
Locus 3: KCQ_04446 (Region 1)
Locus: KCQ_04446ORF Start: 184223
ORF Stop: 184366
Strand: Backward
Protein Sequence: MIKHTPEALDIWLTKLHPKVKGKIAIAVKLAGANKGVKHRGPLTAAV
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: KCQ_04446, transposase
Homolog/Ortholog E-Value: N/A
Locus 4: KCQ_04451 (Region 1)
Locus: KCQ_04451ORF Start: 184367
ORF Stop: 184690
Strand: Forward
Protein Sequence: MEYALTVFKVNADIVLFIRPAQTNMNSQTANAALKRIGYGGKLVAHGLRIVASTALNEAEFNSDAIEVSLAHADKNEVRRAYNRSIYPDIRTVMMDWWGNFVTKNSI
Homolog/Ortholog Species: Integrase
Homolog/Ortholog Protein: KCQ_04451, CP4-57 prophage, integrase, phage(gi16130540), PROPHAGE_Escher_MG1655
Homolog/Ortholog E-Value: 8.37e-30
Locus 5: KCQ_04456 (Region 1)
Locus: KCQ_04456ORF Start: 184700
ORF Stop: 184891
Strand: Forward
Protein Sequence: MLRDMVDVTDDKNLTQGTIFNCAYCASYPNNETLGLVITARCDIVNKDKVDFYNFIPAIPFEI
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: KCQ_04456, hypothetical protein, phage(gi100016), PHAGE_Klebsi_ST16_OXA48phi5.4_NC_049450
Homolog/Ortholog E-Value: 3.27e-33
Locus 6: attR (Region 1)
Locus: attRORF Start: 185025
ORF Stop: 185037
Strand: Forward
Protein Sequence: AGTTTTTCATCAG
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Locus 7: KCQ_04461 (Region 1)
Locus: KCQ_04461ORF Start: 185539
ORF Stop: 187809
Strand: Forward
Protein Sequence: MSFIAIESNAARKIVSERMLQSADYDKGQILADLLKDRKILDFSLEVKAVSINTGIYILSKNPNKKNMLIFDTTTFDGFKKNSNEIITIIQKSCRLAIKLWDKIGHSPCEKIISGSSLIALLPLSFTTGKSYKVILDKSPDKERQEKRNESSFLIFHDGYDTTDAVPKLANFRKAKEGIHDIDTLSLFKIPDIEEENVTTYLNINETDNTNTQSNPHMGLDYWEKNLTESQKRFVYSESYGPDILKGAAGTGKTLSLILRCVVQLQNSKKTDNLLRAIFITHSIATKTNIENLIASNGGSEFIDSEHQQSVEVTTLQEWCIKNLGNRIEATEYLDSDAFESKQLQLLYINEALEDFLINDYAGSVNFISPALKDFFGNNDPWGISILLQEEISTYIKGRAGDDLKTYAALPRSKNVIPLENEDDFKTIFSIYNKYQDKLITLGLFDSDDITLSALKETSTPIWKRRRINGGFDIMYIDETHLFNINELSLFHNLLKPNSNHIVFTMDRSQASGDTTITKEDVAKELDATLAHEHGLNAVFRSSEHIINLASCVLASGATLFQELENPLAESMTGHTSLIEEKCDIPYIISKQRSSEVYRSTFALADYISQNSGIKRSDILIVPCTDSTLKDLKNHANKHDINHISIERRGDNLAVFKASEKNLYVIGGMEYIGGLEFSAVIIVGADSDKFPEQSTYNGESLHFINYSSFNKLYVAITRAKYQVAFVTEKTQKISPLLETAFREGLVIQNDELSNII
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: KCQ_04461, hypothetical protein, phage(gi100015), PHAGE_Klebsi_ST16_OXA48phi5.4_NC_049450
Homolog/Ortholog E-Value: 0.0
Locus 8: attL (Region 1)
Locus: attLORF Start: 188006
ORF Stop: 188018
Strand: Forward
Protein Sequence: AAATCGCGGTATT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 9: KCQ_04466 (Region 1)
Locus: KCQ_04466ORF Start: 188031
ORF Stop: 188378
Strand: Backward
Protein Sequence: MSRYHVSSSQGQYEKDSGEQNGAALVNTLAPELMGTAAVRELAIRRATHYIGEALRGYLATSNEINYSAENNDILTAIGFRPDTASRVDNQQKYTPVQNRVYAHRQAELSQQKPT
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: KCQ_04466, amber mutation-suppressing protein, phage(gi9627520), PHAGE_Entero_P4_NC_001609
Homolog/Ortholog E-Value: 3.44e-23
Locus 10: KCQ_04471 (Region 1)
Locus: KCQ_04471ORF Start: 188558
ORF Stop: 189607
Strand: Backward
Protein Sequence: MFALGEYSAVKLAEAREKCNQARKQVAEGVNPAQARQLDKIRKVNYASNTFELIAKEWLQMKDWAEITKTRRLDMLERVVFPAIGKLPVREITPHHILKILQETAKRGAPTVAAEARRTISSVFELAVATLRADSDPVWPVRKALPANKTQHKQALNPQQIGKLLSCFDNSRGSYQVNYCMWLMWWTLARPAEATEAEWTEFDLDNALWTIPATRMKARREHVIPLPFQAVKMLRTLQGLIGHRQHLFPGRDNPLGPMTSHSLRQLLKSLGWSGTYSPHATRTTGSTRLNEMGYRPDAIEAQLAHADTNNIRRTYNHATYLDERKVMMQDWADKLDGWVSSTRSSADVS
Homolog/Ortholog Species: Integrase
Homolog/Ortholog Protein: KCQ_04471, putative prophage integrase, phage(gi26250313), PROPHAGE_Escher_CFT073
Homolog/Ortholog E-Value: 8.67e-70
Locus 11: attR (Region 1)
Locus: attRORF Start: 191667
ORF Stop: 191679
Strand: Forward
Protein Sequence: AAATCGCGGTATT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download