Submission Results
Sequence Name: Not Available
GenBank Accession Number: ALKG01000006.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: ALKG01000006.1.PHASTER.zip
gi|00000000|ref|ALKG01000006.1| Selenomonas sp. FOBRC6 contig00111, whole genome shotgun sequence. 12596, gc%: 49.30%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 6.7Kb | incomplete | 60 | 10 | 1-6766 info_outline | PHAGE_Geobac_E2_NC_009552(2) | 53.44% | Show info_outline |
Region DNA
>1 1-6766 ATTTTCCAATATCGAGCAGCAGTCGCTTGAGTTCGTCAAATACACTTTGAATCCGTGGGT GGTTCGTTGGGAGCAGTCGCTTCAAAAGGCTCTGCTGACGGACAAGGAGCGGAAGGACTA CTTCATCCGCTTCAATGTGGACGGGCTTCTGCGCGGAGATTACAAGAGCCGTATGGAGGG CTATGCCATCGGGCGGCAGAACGGATGGCTCTCGGCGAACGACATCCGCAGTCTTGAGGA CATGAACCCCATCGAAGCGGACGAGGGTGGCGATCTCTATCTCATCAACGGGAATATGAC GAAACTGAGGGACGCAGGGCTGTTTGCCGCTAGGTAGAAGGGAGAAAGCGATGAAGCGTA AATTTTGGAACTGGGTACGGAACGAAGGAGAGAAGCGAATCTTGCTTCTGGACGGTGAAA TCTCAGATGAAACATGGTGGGGCGATGAGGTCACACCTCAGATGTTCCGCTCTGAGCTGA ACGCCACCGAGGGAGATATTGACCTCTGGATCAACTCACCGGGCGGCGACTGTTATGCAG CGGCACAGATCTACAATATGCTGATGGAATATCCCGGCGAGGTCACGGTCAAGATTGACG GGATTGCCGCTTCCGCCGCATCCGTCGTTGCGATGGCAGGATCGACCGTCGAGATTTCTC CTCTAGGTTTGTTGATGCTGCATAATCCGATGACCGTTTCTATCGGAGACACGCACGAGA TGGAGCGGACAATTACGTTCCTCTCTGAAATCAAGGAGAGCATCATCAACGCCTATGAAC TCAAGACGGGACTTTCCCGTGCGAAGATTTCACGGCTGATGGATGCCGAGACGTGGATGA ACGCAAAGAAAGCTGTGGAGCTTGGATTTGCGGATTCCGTTCTCTATGCGGACGTTCAGC GTCCTGTGACCGATACGGCAGACGGGCTGATCTTCTCCCGTGCCGCTGTCACGAACTCCC TGCTCTCGAAATTCGGGCAGGGAACACAATCAAACATTGTCGATGCAGAGCCGATTAAAC GACGGCTCTTTTCTATTTCACATTAACGGAGGGACAAGGACATGGATAAGATTATGGCAA TGCGCGAGAAGCGTGCGGAAATGTGGGAACAGGCAAAGCAGTTTCTGGATTCTCACGAAA AGGACGGGCATCTCACAGCCGAAGATGCCAAAGCATACGAGCAAATGGAGAATGAGGTGC TTGCGCTCGGCAAGGACATCGAGCGCATGGAGCGTCAGGCGATTCTCGATGCGCAGCTTG CAAAGCCCGTGACGGCGGCAATCACCAACATTCCGGGGGCTGTGCTCAACGCGGAAAAGA CGGGACGTGCAAGCGAGGCATACCATGCAGCAATGCTGAAGGCACTCCGTACGAACTTTC GGCAGGTGGAGAACGTCCTGCAGGAGGGCGTGGATGCAAACGGCGGCTATCTCGTGCCGG AGGAATACGATCAGCGTCTCATTGACGTTCTGAATGAGGAGAACGTCCTGCGTCCGCTTG CAACGACGATCACGACGAGTGGGGAGCACAAGATCAATATCGCCGCCACGAAACCTGCGG CATCGTGGATTGAGGAGGGCGCAGCACTTACCTTCGGGGACGCGACCTTCGACCAGATCG TTCTCGACGCGCACAAGCTCCACGTCGCAGTCAAGGTAACGGAAGAGCTTCTCTACGACA ACGCCTTCAACCTTGAGAACTATCTCATCGAGCAGTTCGGCAAGGCACTGGGCAACGCAG AGGAGGACGCATTCCTGAATGGCGATGGGACGCACAAGCCGAAGGGACTTCTCACCTCGG CAAAAACATCTGTCACCACGGCGGCGGCAGACCTCAAGGCGGACGAACTCGTGACGCTCG TCTACAGCCTCAAGCGTCCCTACCGCAAGAATGCGGCGTTCATCGTCAATGACCAGACGC TTGCAAGCATTCGCAAACTCAAGGACGCGAACGGTGCGTATTTCTGGCAGCCGTCCTACC AGATGGGGGAGCCCGACCGTCTGCTCGGCTATCCCGTCTACTCTTCGGCATATATGCCTG CTGTCGAGGCAGGCAAGACCGTCATCGCGTTCGGCGATTACTCCTACTACAACATCGGGG ATCGCGGCACCCGTGCTCTGCAGGAACTCAAGGAACTCTTCGCGGGCAACGGTATGATCG GCTATGTCATGAAGGAGCGTGTGGACGGAAAGCTCGTTCTTGAGGAAGCCGTGCAGACGC TTAAGATGAAGGGTTGATGTATGTTTGCGGCAAAGAGGGGAGGTGGTTCTATGCTTGTGC CGCTCGCAGCAGTCAAGCAGTATCTGCGCATTGACGGCGATGAGGAGGACGATCTCCTCA TGCACTTTGCGGAAACGGCAGAACAGATTTGTACGGCACTTCTGCGCGTGAAGAAGCTGT CCAAGGTCGAAGATCAGGCAATTGTGCGCGTCGCAATCCTCTACGCCGTGTCCTATCTCT ACGAACACCGAGAGGAAGCGGATCACAGAGGGCTTGCGCTGACACTTCGCTCCTTGCTTT TTGGTGTGCGGAAGGAGGTCTTTTAGGTGAGAGTGTCCATGAGCGAACTGCGTCATCGAA TCACTATTCTGCGTCCCGTCACAGATACGGACGATGAGGGAAATATCCTCTCATCGTCGG TGCAGGAAGTCGGTAAAGCATGGGCACTCGTTCTGCCCTTTGCGGCAAAAATCTTGGACG GATATGCGGAGAAGGTGCAGGAGGTGGATTACCGCATCGTCATTCGTTACCGTGCGGATG TGCGCATGACGGATCGTATTCGTTGGGAAGACAAAACGCTCACGCCGATTGCACCGTCAT ATCCGCTCGGCGGGAAGAAACGGTGGCTTGTTCTGGAATGCAGGGAGTTGGTGGAAGATG GCTAGATACCGAGGTTTCGTCTCTGCCGAGAAGATATTGTCCGAACTCGGCGCGGAGGCG ACGACTGCGCAGGATGAGCAATCTCAATAAATGGAAGAAAGCAGGGGGTGTCTGATATGG ATCAGATTTTGACAATACGTCTGTATGCGGCGGGCATCGGCATCGTTGTTGGGGAGTTCC TCGGCAGCTTTGACGATCTGCTCTATGCCCTCGTTGTGTTTGTGGCGACGGACTACATCA CAGGTGTTCTCCGTGCGATTGTGGAGAAGAAGCTGTCCAGTGCAATCGGCTTCAAGGGAA TCTGCAAGAAAGTCTGCATCTTCACCCTTGTCGGCGTGGCGAACGTCCTTGATGTACACA TCATCGGGAGCGGCTGTGTCCTGCGTTCTGCCGTGATCTTCTTCTACATCTCGAATGAAG GAATCTCCATCATCGAGAACGCAGCACGGATGGGGCTTCCCGTTCCACAGAAACTGCAGG ACATGATGCACAGCCTCAAAGATAAATAACTGCTTTAACCTCAATGCCCGGCGGCTTACC GTCGGGTTATTTTTTTACTTTTTGGGTGACCAAAAGTGCCGTTTTTGTCTGCTGTTCCAT GAAGGGAGATGTTGAGATGAGCAAGGAAGAAGGGCTTCGGGAAATGACGTATCAGATGGT GATGCGTGCTTCATGGAAAATGCTGCAGAGCGGTTTTTTGTCAGAGGACGAGTATCTTGC GTTTGAAGCGAAAATGCGCGAGAAATATCGCCCCGTCATAGGCGTACTATTTTCAGATAT TGACTTGCTATCGTGCGGATAGTACGGGAATATGGGAGTGGAAAGGAGGGAGCACCATGA AAATACGACGGGTTCAACCAAGCCCTATATTGCAGAAAAAGCTGCGTGTGGCTGCCTACG CCCGTGTCTCTGTGGATACGCTTCACTACTCCCTTGCAGCGCAGGTCAGTTACTACAGCA GTCTCATCCAGAATAATCCTGCATGGGAATACGCAGGCGTGTATGCGGACGAGGGAATCA CAGGCACAAGCACCACGCATCGGACGGAGTTCAAGCGGCTGATCGCCGACTGCAACGCCG GGAAGATTGACTTGGTGCTCGTCAAAAGCATCAGCCGATTTGCCCGTGACACCGTAGATT GCCTTCATACCGTTCGACGCTTGAAAGAGAAGGGGATTGCCGTCCGCTTCGAGAGGGAGA ACATTGATTCCACATCCGAGGACGGGGAACTGCTCTTGACGCTGCTCGCATCCTTTGCGC AGGAGGAGAGCAGAAGCATCGGCGACAACATTCGGTGGGGTGTGCGGCGACGGTTCGCAG AGGGGATCCCGAACGGGCATAAAGCACCGTACGGCTACACATGGGACGGAGAGATGTTCC GCATTATCCCTGCCGAGGGCAAGATCGTCAAGGAGATTTACCGCAGATACCTTGCCGGAG AATCTGCATACGCCATCGCCAAGACTCTCGCGGGACGCGGAATCACAGGACGGCAGGGGA GACCAATAGAGCAGACCACGGTAAAGGACATCCTCTCCAACATCTCCTACACGGGCACAA TGGCGCTGCAGAAGAACTACATCAGTGAGGGACATATCCGCAAGCGGAATAAAGGCGAAC TGCCCATGTATCTGGTGGAGGGAATATTCGAGCCGCTCATAAGCCGAGATGACTTTGATA AGGCGCAGGAGATACGAAAACTGAGGGCCGAACGGGCTGTGAATCGGAATCCTGTGCTGA TGCCATTCTCCGGAATGGTGAAATGCGGATGCTGCGGCAGCGGCTTCAGCAGAAGAACCG CTGGGAAGTACAGGCGATGGGGCTGCAACACAAGAGAGCGGAAAGGTAGGGAATCCTGTG ACAGCCGTCCAATCAAGGAAGAGGAGCTTGTGGCTGCGGTCAGAACCGTCATGGAGAAGG AAGATTTCGATGCCACAAAACTTCGGCGCAAGGTGTCCAAGATCGTCATTTACGGTGATC GAATCGACTTCCATCTTGTCAACGGACGCATAAAAAAGACTGCCCGCATCTACAACGGGC AGCGCGGCAGCAATCCCTTCACGAACAAAGTGTACTGCGCCTCCTGCGGCAGCAAGTGTG AGCGTGACACTTGGACGAAGGGAACTAAGGTGTGGGCGTGTAGTCAGCCGCGCACAAAAT GCAGTATGAGAAGATTGTCCGAATCCGAACTAAAGGAAGCGGCAGAATCCTTGCTCGGCG ATGGCTACGAGGGCAAGATCGTACAGAATGTCGAGCGGATCACCATATCCGATGATGAGG TCATATTTCAACTCAAAGAAGGAGGCGCATACCGATGGCAAAGACAGTGAGGGTGATTCC TGCAACTCCCAGAGTGTTTCGGTCAGAAGTTGCGGCAGAACCAAGACGGCGCAGGACGGC AGGGTACGCCAGAGTTTCGACCGACCATGAAGAACAGGCTTCCAGTTATGAAATGCAGAT GGCGCATTACAAGAACTACATCGAAAGCCGCGCTGACTGGGATTTCGTCGGCATGTATTC GGACGAAGGGATCAGTGGAACCAACACAAAGAAGCGTGACGGCTTCAACCAAATGATCGA GGATGCCCTTGCCGGCAAGATCGACCTCATCATTACAAAGTCGGTCAGCCGCTTTGCGAG AAACACTGTGGATTCTCTGCAGAACGTCCGCAAACTCAAGGAAAACGGTGTAGAGATCTA TTTTGAGAAAGAGAACATTTGGACGTTCGACACGCGCGGAGAACTCCTTATAACGATTAT GTCCAGCCTAGCTCAGGAGGAAAGCCGCAGCATCTCGGAGAACACCACATGGGGCAAGCG GAAGCAGTTCGCCGAGGGCAAAACCAGTGTGGGCTACAGTGCCTTTCTCGGCTATGACAA GGACTTCGAAATCAACGAAGAACAGGCGAAAATCGTAAGGCTCATCTACAAACTCTTCCT TGGCGGGCGATCCTTCTATGCCATCACTAAGGAACTGGAGACGCGTTGCATCAAATCCCC GTCGGGAAAGGACAAGTGGTACATTTCCACGGTGCGCTCCATCCTCACGAATGAGAAGTA TCGCGGTGATGCGCTGATCCAGAAAGAGTATACGGCAGACTTCCTCGATAAGACGCGACG GAAGAACACGGGCGAGATTCCACAGTACTATGTGGAAGAGCACCACGAGGCGATTATCCC GCCAGACTTATTCGACTTTGTGCAATTGGAGATAAAACGCAGAGAGCAGAACGGCAAGCA CAGTGGTGTGAGTATCTTCGCGAACAAAATCAAATGCGGCTGCTGCGGCGGTTACTACGG TGCGAAGGTATGGCACTCCACGGACAAGTACCGCAGGGTGATCTACCGCTGCAACAAGAA ATATGCCCACAAGGGCAAGCCGTGCAGTACGAGGCACTTGACGGAGGAGGAAATCAAACA GATTTTCGTGAAAGCACTGAACTCCTTGATGGAAGTCAAAGAGAACGTGATTGCAGAACT TCGCGCTCTGATTGATAGCGTTTGCCAAACAGGGGAGCTTGTCGAGGAACACGGTAGAGT AGAGCAAGAACTCACTCTTTTGACAGAACGGCTTGAAAAACTGATTCGCGAGAATGCACG CGTGGCACAGGATCAGACGACGTATCTGAAACAGGAGAATGAGATTCGCGCTCTCTATCT GGAAAAGCAGGGAGCTTTGGAGAAGCTAGACAAGCAAATTGCCGAGAGGGAGAGTAAGAG AAATATCCTAGAGGGCATGATTCAAGTGGTATGTGGTATCAACGGGGAGCAGGTTGCATT CGATGAGGAGCTATGGGGCGGGCTGCTTGATCACATCGTGGTCAAAGAGGATGGCGCGGT AGTTGTTGTTTTCAAGGGTGGGATTGAGACTGCAATTGAGGGATGA
Region Details
| Region | 1 |
| Region Length | 6.7Kb |
| Completeness(score) | incomplete(60) |
| Specific Keyword | portal,capsid,head,integrase,recombinase |
| Region Position | 1-6766 |
| # tRNA | 0 |
| # Total Proteins | 10 |
| # Phage Hit Proteins | 7 |
| # Hypothetical Proteins | 2 |
| Phage + Hypothetical Protein % | 90% |
| # Bacterial Proteins | 1 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Geobac_E2_NC_009552(2) PHAGE_Entero_phiP27_NC_003356(2) PHAGE_Bacill_WBeta_NC_007734(1) PHAGE_Lactoc_lato_NC_004746(1) PHAGE_Salmon_ST64B_NC_004313(1) PHAGE_Clostr_phiCT453B_NC_029004(1) PHAGE_Bacill_PBC1_NC_017976(1) PHAGE_Clostr_phiCTC2B_NC_030951(1) PHAGE_Entero_mEp235_NC_019708(1) PHAGE_Shigel_SfIV_NC_022749(1) PHAGE_Lactob_phiadh_NC_000896(1) PHAGE_Burkho_phi6442_NC_009235(1) PHAGE_Klebsi_phiKO2_NC_005857(1) PHAGE_Entero_HK022_NC_002166(1) PHAGE_Entero_SfI_NC_027339(1) PHAGE_Bacill_IEBH_NC_011167(1) PHAGE_Bacill_phBC6A51_NC_004820(1) PHAGE_Lactob_phiPYB5_NC_027982(1) PHAGE_Yersin_PY54_NC_005069(1) PHAGE_Shigel_SfII_NC_021857(1) PHAGE_Clostr_phiCT19406B_NC_030947(1) PHAGE_Bacill_250_NC_029024(1) PHAGE_Entero_HK140_NC_019710(1) PHAGE_Bacter_Lily_NC_028841(1) PHAGE_Burkho_phiE125_NC_003309(1) PHAGE_Entero_mEpX2_NC_019705(1) PHAGE_Lactoc_bIL286_NC_002667(1) PHAGE_Clostr_vB_CpeS_CP51_NC_021325(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 20% |
| GC % | 53.44% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|ALKG01000006.1| Selenomonas sp. FOBRC6 contig00111, whole genome shotgun sequence. 12596, gc%: 49.30%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 10 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 1..337 | PHAGE_Entero_phiP27_NC_003356: putative portal protein; HMPREF1148_2114; phage(gi18249902) | 9.72e-23 | Showinfo_outline |
| 2 | 351..1046 | PHAGE_Geobac_E2_NC_009552: putative Clp peptidase; HMPREF1148_2115; phage(gi148747731) | 4.00e-55 | Showinfo_outline |
| 3 | 1062..2237 | PHAGE_Entero_phiP27_NC_003356: putative major capsid protein; HMPREF1148_2116; phage(gi18249904) | 3.12e-40 | Showinfo_outline |
| 4 | 2271..2546 | putative Phage gp6-like head-tail connector protein; HMPREF1148_2117 | 0.0 | Showinfo_outline |
| 5 | 2547..2885 | PHAGE_Entero_mEp235_NC_019708: hypothetical protein; HMPREF1148_2118; phage(gi428781819) | 6.57e-09 | Showinfo_outline |
| 6 | 2997..3389 | PHAGE_Bacill_IEBH_NC_011167: holin; HMPREF1148_2119; phage(gi197261577) | 5.37e-30 | Showinfo_outline |
| 7 | 3497..3682 | hypothetical protein; HMPREF1148_2120 | 0.0 | Showinfo_outline |
| 8 | complement(3636..3806) | hypothetical protein; HMPREF1148_2122 | 0.0 | Showinfo_outline |
| 9 | 3768..5210 | PHAGE_Lactob_phiPYB5_NC_027982: putative integrase; HMPREF1148_2121; phage(gi937456185) | 6.41e-29 | Showinfo_outline |
| 10 | 5333..6766 | PHAGE_Bacill_phBC6A51_NC_004820: Site-specific recombinase; HMPREF1148_2123; phage(gi31415812) | 5.03e-21 | Showinfo_outline |
Sequence
>1..337
SelenomonasspFOBRC6FSNIEQQSLEFVKYTLNPWVVRWEQSLQKALLTDKERKDYFIRFNVDGLLRGDYKSRMEGYAIGRQNGWLSANDIRSLEDMNPIEADEGGDLYLINGNMTKLRDAGLFAAR
Sequence
>351..1046
SelenomonasspFOBRC6MKRKFWNWVRNEGEKRILLLDGEISDETWWGDEVTPQMFRSELNATEGDIDLWINSPGGDCYAAAQIYNMLMEYPGEVTVKIDGIAASAASVVAMAGSTVEISPLGLLMLHNPMTVSIGDTHEMERTITFLSEIKESIINAYELKTGLSRAKISRLMDAETWMNAKKAVELGFADSVLYADVQRPVTDTADGLIFSRAAVTNSLLSKFGQGTQSNIVDAEPIKRRLFSISH
Sequence
>1062..2237
SelenomonasspFOBRC6MDKIMAMREKRAEMWEQAKQFLDSHEKDGHLTAEDAKAYEQMENEVLALGKDIERMERQAILDAQLAKPVTAAITNIPGAVLNAEKTGRASEAYHAAMLKALRTNFRQVENVLQEGVDANGGYLVPEEYDQRLIDVLNEENVLRPLATTITTSGEHKINIAATKPAASWIEEGAALTFGDATFDQIVLDAHKLHVAVKVTEELLYDNAFNLENYLIEQFGKALGNAEEDAFLNGDGTHKPKGLLTSAKTSVTTAAADLKADELVTLVYSLKRPYRKNAAFIVNDQTLASIRKLKDANGAYFWQPSYQMGEPDRLLGYPVYSSAYMPAVEAGKTVIAFGDYSYYNIGDRGTRALQELKELFAGNGMIGYVMKERVDGKLVLEEAVQTLKMKG
Sequence
>2271..2546
SelenomonasspFOBRC6MLVPLAAVKQYLRIDGDEEDDLLMHFAETAEQICTALLRVKKLSKVEDQAIVRVAILYAVSYLYEHREEADHRGLALTLRSLLFGVRKEVF
Sequence
>2547..2885
SelenomonasspFOBRC6MRVSMSELRHRITILRPVTDTDDEGNILSSSVQEVGKAWALVLPFAAKILDGYAEKVQEVDYRIVIRYRADVRMTDRIRWEDKTLTPIAPSYPLGGKKRWLVLECRELVEDG
Sequence
>2997..3389
SelenomonasspFOBRC6MDQILTIRLYAAGIGIVVGEFLGSFDDLLYALVVFVATDYITGVLRAIVEKKLSSAIGFKGICKKVCIFTLVGVANVLDVHIIGSGCVLRSAVIFFYISNEGISIIENAARMGLPVPQKLQDMMHSLKDK
Sequence
>3497..3682
SelenomonasspFOBRC6MSKEEGLREMTYQMVMRASWKMLQSGFLSEDEYLAFEAKMREKYRPVIGVLFSDIDLLSCG
Sequence
>complement(3636..3806)
SelenomonasspFOBRC6MKRIHRDTGVGSHTQLFLQYRAWLNPSYFHGAPSFPLPYSRTIRTIASQYLKIVRL
Sequence
>3768..5210
SelenomonasspFOBRC6MAAYARVSVDTLHYSLAAQVSYYSSLIQNNPAWEYAGVYADEGITGTSTTHRTEFKRLIADCNAGKIDLVLVKSISRFARDTVDCLHTVRRLKEKGIAVRFERENIDSTSEDGELLLTLLASFAQEESRSIGDNIRWGVRRRFAEGIPNGHKAPYGYTWDGEMFRIIPAEGKIVKEIYRRYLAGESAYAIAKTLAGRGITGRQGRPIEQTTVKDILSNISYTGTMALQKNYISEGHIRKRNKGELPMYLVEGIFEPLISRDDFDKAQEIRKLRAERAVNRNPVLMPFSGMVKCGCCGSGFSRRTAGKYRRWGCNTRERKGRESCDSRPIKEEELVAAVRTVMEKEDFDATKLRRKVSKIVIYGDRIDFHLVNGRIKKTARIYNGQRGSNPFTNKVYCASCGSKCERDTWTKGTKVWACSQPRTKCSMRRLSESELKEAAESLLGDGYEGKIVQNVERITISDDEVIFQLKEGGAYRWQRQ
Sequence
>5333..6766
SelenomonasspFOBRC6MQMAHYKNYIESRADWDFVGMYSDEGISGTNTKKRDGFNQMIEDALAGKIDLIITKSVSRFARNTVDSLQNVRKLKENGVEIYFEKENIWTFDTRGELLITIMSSLAQEESRSISENTTWGKRKQFAEGKTSVGYSAFLGYDKDFEINEEQAKIVRLIYKLFLGGRSFYAITKELETRCIKSPSGKDKWYISTVRSILTNEKYRGDALIQKEYTADFLDKTRRKNTGEIPQYYVEEHHEAIIPPDLFDFVQLEIKRREQNGKHSGVSIFANKIKCGCCGGYYGAKVWHSTDKYRRVIYRCNKKYAHKGKPCSTRHLTEEEIKQIFVKALNSLMEVKENVIAELRALIDSVCQTGELVEEHGRVEQELTLLTERLEKLIRENARVAQDQTTYLKQENEIRALYLEKQGALEKLDKQIAERESKRNILEGMIQVVCGINGEQVAFDEELWGGLLDHIVVKEDGAVVVVFKGGIETAIEG
Selenomonas sp. FOBRC6 contig00111, whole genome shotgun sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 12596 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: HMPREF1148_2114 (Region 1)
Locus: HMPREF1148_2114ORF Start: 1
ORF Stop: 337
Strand: Forward
Protein Sequence: FSNIEQQSLEFVKYTLNPWVVRWEQSLQKALLTDKERKDYFIRFNVDGLLRGDYKSRMEGYAIGRQNGWLSANDIRSLEDMNPIEADEGGDLYLINGNMTKLRDAGLFAAR
Homolog/Ortholog Species: Portal protein
Homolog/Ortholog Protein: HMPREF1148_2114, putative portal protein, phage(gi18249902), PHAGE_Entero_phiP27_NC_003356
Homolog/Ortholog E-Value: 9.72e-23
Locus 2: HMPREF1148_2115 (Region 1)
Locus: HMPREF1148_2115ORF Start: 351
ORF Stop: 1046
Strand: Forward
Protein Sequence: MKRKFWNWVRNEGEKRILLLDGEISDETWWGDEVTPQMFRSELNATEGDIDLWINSPGGDCYAAAQIYNMLMEYPGEVTVKIDGIAASAASVVAMAGSTVEISPLGLLMLHNPMTVSIGDTHEMERTITFLSEIKESIINAYELKTGLSRAKISRLMDAETWMNAKKAVELGFADSVLYADVQRPVTDTADGLIFSRAAVTNSLLSKFGQGTQSNIVDAEPIKRRLFSISH
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: HMPREF1148_2115, putative Clp peptidase, phage(gi148747731), PHAGE_Geobac_E2_NC_009552
Homolog/Ortholog E-Value: 4.00e-55
Locus 3: HMPREF1148_2116 (Region 1)
Locus: HMPREF1148_2116ORF Start: 1062
ORF Stop: 2237
Strand: Forward
Protein Sequence: MDKIMAMREKRAEMWEQAKQFLDSHEKDGHLTAEDAKAYEQMENEVLALGKDIERMERQAILDAQLAKPVTAAITNIPGAVLNAEKTGRASEAYHAAMLKALRTNFRQVENVLQEGVDANGGYLVPEEYDQRLIDVLNEENVLRPLATTITTSGEHKINIAATKPAASWIEEGAALTFGDATFDQIVLDAHKLHVAVKVTEELLYDNAFNLENYLIEQFGKALGNAEEDAFLNGDGTHKPKGLLTSAKTSVTTAAADLKADELVTLVYSLKRPYRKNAAFIVNDQTLASIRKLKDANGAYFWQPSYQMGEPDRLLGYPVYSSAYMPAVEAGKTVIAFGDYSYYNIGDRGTRALQELKELFAGNGMIGYVMKERVDGKLVLEEAVQTLKMKG
Homolog/Ortholog Species: Head protein
Homolog/Ortholog Protein: HMPREF1148_2116, putative major capsid protein, phage(gi18249904), PHAGE_Entero_phiP27_NC_003356
Homolog/Ortholog E-Value: 3.12e-40
Locus 4: HMPREF1148_2117 (Region 1)
Locus: HMPREF1148_2117ORF Start: 2271
ORF Stop: 2546
Strand: Forward
Protein Sequence: MLVPLAAVKQYLRIDGDEEDDLLMHFAETAEQICTALLRVKKLSKVEDQAIVRVAILYAVSYLYEHREEADHRGLALTLRSLLFGVRKEVF
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: HMPREF1148_2117, putative Phage gp6-like head-tail connector protein
Homolog/Ortholog E-Value: N/A
Locus 5: HMPREF1148_2118 (Region 1)
Locus: HMPREF1148_2118ORF Start: 2547
ORF Stop: 2885
Strand: Forward
Protein Sequence: MRVSMSELRHRITILRPVTDTDDEGNILSSSVQEVGKAWALVLPFAAKILDGYAEKVQEVDYRIVIRYRADVRMTDRIRWEDKTLTPIAPSYPLGGKKRWLVLECRELVEDG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: HMPREF1148_2118, hypothetical protein, phage(gi428781819), PHAGE_Entero_mEp235_NC_019708
Homolog/Ortholog E-Value: 6.57e-09
Locus 6: HMPREF1148_2119 (Region 1)
Locus: HMPREF1148_2119ORF Start: 2997
ORF Stop: 3389
Strand: Forward
Protein Sequence: MDQILTIRLYAAGIGIVVGEFLGSFDDLLYALVVFVATDYITGVLRAIVEKKLSSAIGFKGICKKVCIFTLVGVANVLDVHIIGSGCVLRSAVIFFYISNEGISIIENAARMGLPVPQKLQDMMHSLKDK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: HMPREF1148_2119, holin, phage(gi197261577), PHAGE_Bacill_IEBH_NC_011167
Homolog/Ortholog E-Value: 5.37e-30
Locus 7: HMPREF1148_2120 (Region 1)
Locus: HMPREF1148_2120ORF Start: 3497
ORF Stop: 3682
Strand: Forward
Protein Sequence: MSKEEGLREMTYQMVMRASWKMLQSGFLSEDEYLAFEAKMREKYRPVIGVLFSDIDLLSCG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: HMPREF1148_2120, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 8: HMPREF1148_2122 (Region 1)
Locus: HMPREF1148_2122ORF Start: 3636
ORF Stop: 3806
Strand: Backward
Protein Sequence: MKRIHRDTGVGSHTQLFLQYRAWLNPSYFHGAPSFPLPYSRTIRTIASQYLKIVRL
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: HMPREF1148_2122, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 9: HMPREF1148_2121 (Region 1)
Locus: HMPREF1148_2121ORF Start: 3768
ORF Stop: 5210
Strand: Forward
Protein Sequence: MAAYARVSVDTLHYSLAAQVSYYSSLIQNNPAWEYAGVYADEGITGTSTTHRTEFKRLIADCNAGKIDLVLVKSISRFARDTVDCLHTVRRLKEKGIAVRFERENIDSTSEDGELLLTLLASFAQEESRSIGDNIRWGVRRRFAEGIPNGHKAPYGYTWDGEMFRIIPAEGKIVKEIYRRYLAGESAYAIAKTLAGRGITGRQGRPIEQTTVKDILSNISYTGTMALQKNYISEGHIRKRNKGELPMYLVEGIFEPLISRDDFDKAQEIRKLRAERAVNRNPVLMPFSGMVKCGCCGSGFSRRTAGKYRRWGCNTRERKGRESCDSRPIKEEELVAAVRTVMEKEDFDATKLRRKVSKIVIYGDRIDFHLVNGRIKKTARIYNGQRGSNPFTNKVYCASCGSKCERDTWTKGTKVWACSQPRTKCSMRRLSESELKEAAESLLGDGYEGKIVQNVERITISDDEVIFQLKEGGAYRWQRQ
Homolog/Ortholog Species: Integrase
Homolog/Ortholog Protein: HMPREF1148_2121, putative integrase, phage(gi937456185), PHAGE_Lactob_phiPYB5_NC_027982
Homolog/Ortholog E-Value: 6.41e-29
Locus 10: HMPREF1148_2123 (Region 1)
Locus: HMPREF1148_2123ORF Start: 5333
ORF Stop: 6766
Strand: Forward
Protein Sequence: MQMAHYKNYIESRADWDFVGMYSDEGISGTNTKKRDGFNQMIEDALAGKIDLIITKSVSRFARNTVDSLQNVRKLKENGVEIYFEKENIWTFDTRGELLITIMSSLAQEESRSISENTTWGKRKQFAEGKTSVGYSAFLGYDKDFEINEEQAKIVRLIYKLFLGGRSFYAITKELETRCIKSPSGKDKWYISTVRSILTNEKYRGDALIQKEYTADFLDKTRRKNTGEIPQYYVEEHHEAIIPPDLFDFVQLEIKRREQNGKHSGVSIFANKIKCGCCGGYYGAKVWHSTDKYRRVIYRCNKKYAHKGKPCSTRHLTEEEIKQIFVKALNSLMEVKENVIAELRALIDSVCQTGELVEEHGRVEQELTLLTERLEKLIRENARVAQDQTTYLKQENEIRALYLEKQGALEKLDKQIAERESKRNILEGMIQVVCGINGEQVAFDEELWGGLLDHIVVKEDGAVVVVFKGGIETAIEG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: HMPREF1148_2123, Site-specific recombinase, phage(gi31415812), PHAGE_Bacill_phBC6A51_NC_004820
Homolog/Ortholog E-Value: 5.03e-21
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download