Submission Results
Sequence Name: Not Available
GenBank Accession Number: AOJR01000197.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: AOJR01000197.1.PHASTER.zip
gi|00000000|ref|AOJR01000197.1| Pseudomonas syringae pv. actinidiae ICMP 19073 scaffold1, whole 105639, gc%: 58.70%
Download summary as .txt file: summary.txt file_download
Total: 2 prophage regions have been identified, of which 0 regions are intact, 2 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 7.8Kb | incomplete | 10 | 10 | 7471-15335 info_outline | PHAGE_Coryne_SamW_NC_048069(1) | 57.91% | Show info_outline |
| 2 | 6.4Kb | incomplete | 20 | 8 | 71268-77708 info_outline | PHAGE_Escher_500465_1_NC_049342(6) | 58.07% | Show info_outline |
Region DNA
>1 7471-15335 TCAGCGCTTCCCCAAAAGATCTTCGCGAAAATCCGGCGCCGGATAATGGAACGGCACAGG GCCATCGGGCTCGCCGGTCATGAATTGACGAATACGTGGGTTGTCCGAGGACATCAGTTC CTCAGGCGTGCCCTGCCCCAGCACCTGCCCGTCGCCCACGACGTAGAGATAGTCGGCAAT GCTCGCTGTCTCGCTAAGATCATGGGACACGACGATACTGGTGATACCCAGCGCATCGTT GAGCAGGCGGATCAGGCGCACCAGCACGCCCATGGCGATCGGGTCCTGCCCCACAAAGGG CTCGTCATACATGAGGATCTGTGGATCGAGAGCAATTGCACGGGCCAGCGCGACGCGGCG CTTCATGCCCCCCGACAGTTCGTCCGGCATCAGCTCGACCGCACCGCGCAGGCCCACCGC CTGCAGCTTGAGCAGCACGATGTCACGGATCATTTCTTCCGGCAGCTCGGTGTGCACGCG CAAGGGAAAGGCGACGTTTTCGAAAACGTCCAGATCGGTGAACAGCGCCCCGCTCTGGAA CAACACGCCCATCTGCTTGCGCGCGTCGAACAGATCACTGCGCGACAGCTCCGGCAGATT CTGGCCGTTGACCAGCACCTGCCCTTCGCTCGGGCGCAACTGAGCGCCCATCAGGCGCAG CAAGGTAGTCTTGCCACAGCCCGACGGCCCCATGATCCCGGTGACTTTGCCCCGCGGAAT ACGAATACCGACGTTATTGAAAATGCTGCGCGTACCGCGTTTGAAAGACACACCTTTCAA CTCGACCGCATAGGCGTCATCAGGACTCATTTAAACTCCTTGCGATACAGCCTCCGCCCT CGGACGCCGGTTGGTGCCGGCAGACTGGCTGTCCAGGCGGACCGAACAGGCCGCGAACTA TATCACCGCAACCCCCCGTCCCCAAGAAGAGAACCGAGCGGTTCAGGTATTCGCTGAATT ATTCTGTACCACAATGTTATGGCCACAGGCTTCGATACAGACTCGCAAGAACGTAGGAAA TTCGTTTAAAAACCACACAATGACGATCAGACGTGAGGGAATCGTTCATTACCGCTATAA TCGCCGCCTTTGAGCAGGCTGACCCTTTCCAAACATGAACCAATCCAGTGACCTGATCCA ATCGGCGCAACGCACCATTCGTCTCGAAATCGAAGCCATACAAGGCTTGCTCGAACGTCT TGACGGGGATTTCGTGCGCGCGTGCGAAATGATCCTCGCCAGCAAGGGTCGGGTTGTGGT GGTCGGCATGGGCAAGTCCGGGCACGTGGGCAAAAAAATCGCCGCAACACTGGCGAGCAC CGGCACCACGTCTTTTTTCGTCCACCCGGCCGAAGCCAGCCACGGCGACATGGGCATGAT TACCCGTGACGACATCATTCTGGCCCTGTCCAATTCCGGCAGCACCAACGAAATTGTCAC CCTGCTGCCGCTGATCAAGCGCCTGGGCATCAGGATGATCAGCCTGACCGGCGACCCCGA GTCGATTCTGGCCAGGGCTGCAGACATCAACCTCAATGCCCATGTCGTGCACGAAGCCTG CCCGCTCAATCTGGCACCGACGTCGTCAACCACCGCCGCATTGGTCATGGGCGATGCCCT GGCCGTGGCGCTGCTCGATGCACGGGGCTTCACTGCCGAAGACTTTGCATTTTCCCACCC GGGCGGTGCGCTCGGACGGCGCCTGCTGCTCAAGGTCGAGAACGTCATGCACTCAGGTGA CGCCCTGCCCAGCGTTCAGCGCGGCACCCTGCTGCGGGACGCGCTGCTGGAAATGACCCG CAAGGGCCTGGGCATGACTGCAATTCTTGAAGCCGATGGCACGCTTGCCGGCATATTCAC CGACGGTGATTTGCGCAGAACACTGGATCGCCCGGTCGATATCCGTCAGACCACCATTGA TGAAGTCATGACCCTCCACGGCAAGACGGCGCACGCAGACATGCTTGCCGCCCAGGCGCT GAAAATCATGGAGGACAACAAGATCAGCGCTCTGGTCGTCGTGGACCAGAACGACAAGCC GGTGGGCGCATTCAACCTGCAAGACCTTTTGCGCGCAGGTGTCATGTGATGGAAACCGAA ACAATGACTCAGGACCTCATGCAGCGCGGCAAAGCCATCAAGCTGGCCGTTTTCGATGTC GACGGTGTACTGACTGACGGCCGTCTTTATTTCATGGAAGATGGCAGCGAGATCAAGACG TTCAATACGCTCGACGGCCAAGGCATAAAAATGCTGATAGCCTCCGGCGTGACTACTGCC ATTATCAGTGGCCGCAAGACGTCGATCGTCGAGCGCCGGGCAAAGAGCCTGGGCATCGCG CATCTGTTTCAGGGCCGCGAAGATAAACTGGTCGTACTGGATCAATTGCTGGCAGAGTTG AAACTTGATTACGAACAAGTCGCCTATCTGGGCGACGATCTGCCAGACTTGCCCGTCATT CGGCGTGTCGGTCTGGGCATGGCGGTTGCCAATGCAGCAGGCTTTGTACGCGAGCATGCA CACGGAATAACCAGAGCGCGAGGCGGCGAAGGCGCTGCACGCGAGTTCTGCGAACTGATT CTGAGTGCGCAAGGCAACCTTGAAGCGGCTCACTCCGCCTATTTATAGAAGCCATTATGT TCACTAAAAAAATTCGGAAGTTCCTGCTTTTCGGGGTACTGGCGGTGCTGCTGGCGGCCG TCGGCTATTGGAACATCAGCCCGGAAAGTTTCATGGATAGACCCATTACGTCCGTTGACG ACACGGTCATCGACTACTATGCGATCAATACCCGCAGCGTGCAGTATCTGCCGGATGGCA CACTTCAGTACGACATGACTGCCGATAAGGTAGAGCATGTGAAGGCCACAGACGTGAGCC TGCTGACCACACCCAACCTGCACATGTACCGTGGCGGCGAGTTCCCATGGCACGTGAATA GCAAAAGAGGCGAAGTTTCGTCTGCAGGTGATCAGGTTGAGCTGATCGACGATGTTCGCG TCGAGCGCACCGATGAAAAACAACGCACAACCATCATTACCAGTAGCCGCATGACCGTAT TCCCGCAGAAGGAATATGCGCAGACCGACCAAGACGTTAGAATCGACGGCGCGGGCGGTG TCACTACGGCCAAGGGAATGAAAGCGTATTTGAAAGACAGCAGGATGGACCTGCTGTCCA ACGTAAGAGGACAGTATGAGGCTCGTTAAAACTCTTCCTTTATTGCTCGGCCTGAGCGCG GCACTGGGAAGCGCGAGCGCCTGGTCCCTGCCAAATGACCGTGATCAGCCGATCCACATC CAGTCTGACGATGCTCAGCTCGATGACAAGAAAGGCGTGGCGACCTACAAAGGTAACGTC ATCATCACCCAGGGCTCGATGAAAATCACCGGCAACACCGTGACGATCACTCGTAATGCC CAGGGCGAAGTCGATGTGTTCACCTCGGTCGGCAACCTGGCCTACTACGAGCAGAAACCT GCCGTGGATAAACCGATCGTGCAGGCATATGCCATCACCATCCAGTATTACGCCGGGCAG GACCGTATTGTCCTGATCGACAAGGCCAAGGTCATCAATGACGGCAACACGTCAGAAGGC GAGAAAATCGTCTACGACACCGTCAGGCAGGTCGTCAGCGCCGGCCGGGCCAATGGCGGT GCCAAGGTGACCACACCACGTCCGCGTATCGACATGGTCATCCAGCCGAAAAAGAAAACC GATCAACCGCAGAAGGCCCCGTAAATGGCAACGCTCAAAGCCCAGCATCTGGCTAAAAGC TACAAAAGCCGGCAGGTCGTGCGCGATGTGAGTATCTCCATCGACAGCGGCCAGATCGTC GGCTTGCTGGGCCCCAACGGCGCCGGCAAGACCACATGTTTCTACATGATCGTGGGTCTG GTCCAGGCTGATCAGGGTCGTGTGCTGATTGACGATCTGGACATCAGCCACCAACCCATG CATGGCCGCGCACGCGCCGGTATTGGCTATCTGCCGCAGGAAGCCTCGATCTTCCGCAAG TTGTCGGTGTCCGACAACATCATGGCGATTCTCGAGACCCGCAAGGAACTCGACGCCGGG GCTCGCCGCAAGGAGCTGGAAAGCCTCCTGCAGGAGTTTCACATCACCCACATTCGCGAC AACCTGGGCATGAGCCTGTCGGGTGGTGAGCGTCGCCGTGTGGAGATCGCCCGTGCGCTG GCCACGTCGCCGAAGTTCATTCTGCTGGACGAACCGTTCGCAGGCGTTGACCCGATTTCG GTCGGCGACATCAAGCAGATCATTCACCACCTCAAAGCCAAGGGCATCGGCGTACTCATC ACAGACCACAACGTCCGTGAAACGCTGGACATCTGCGAAACCGCCTACATCGTCAACGAT GGACAGCTGATCGCAGAAGGCGACTCGGAAACCATTCTGGCGAATGAGCTGGTGAAAGAG GTCTACCTCGGCCACGAGTTCCGCCTTTAATCGACTGCCCTTTGCGCTTCGCGGCCGATT GATGCCCATGCAGTGTGTTGACAATATTTTATTTGTCATATCACTCTAGGCAAAGGCACA GGTTTCAGGCATATAATTTGCTTAAGTTGGCGCCCCGGCGCCTGTAGTAGATGGCGCGTG CGCGCCGGCGAATAAGGTGTTTAGCCCCTGCCATGAAACCATCGCTAGTCTTGAGAATGG GCCAGCAGCTGACGATGACACCGCAGCTGCAACAGGCAATCCGCTTACTTCAGCTTTCCA CTCTGGACCTCCAGCAGGAGATTCAGGAGGCGCTGGAGTCAAACCCTATGCTGGAACGGC AGGAAGAAGGCGACGACTTCGACAACTCCGACCCGCTTGCCGACAACATCGAACAAAAGC CCAACCCCGACGTTCAGGAACCGACCTACCAGGAATCCGCGCCTACCGTGGACAACCTCG AGGACGGCGAATGGAGCGAGCGCATTCCCAATGAACTGCCGGTCGATACTGCCTGGGAAG ATGTCTACCAGACCAGCGCCAGCAGCCTGCCCAGCAACGATGATGACGAGTGGGACTTCA CCACCCGTACTTCGGCCGGCGAAAGCCTGCAAAGCCATCTGCTGTGGCAGCTGAACGTTG CACCGATGTCCGACAAGGATCGTCTGGTCGCCGTTACGCTGATCGACTGCATCAACAATC AGGGCTACCTGGACGAGACGCTTGAGGAGATTCTCGAGTCTTTCGATCCGGAACTGGACA TCGAACTCGACGAAATCGAAGCTGTACTGCACCGCATCCAGCAGTTCGAACCTGCAGGCA TCGGCGCGCGCAATCTCAGTGAATGCCTGCTGCTGCAATTGCGCCAGTTGCCGGCGAAGA CGCCTTGGCTGACGGAAGCGCAGCGACTGGTCACCGACTATATCGACCTGCTGGGCAGCC GTGATTACGGCCAGTTGATGCGCCGCATGAAGCTCAAGGAAGACGAGCTGCGCCAGGTCA TCGAGCTGGTCCAGAGCCTCAACCCGCGTCCGGGTTCGCAAATCGAATCCACAGAAGCCG AATACGTCATTCCTGATGTGATCGTGCGCAAGGACAACGAGCGCTGGCTGGTCGAGCTCA ATCAGGAGTCGGTGCCGCGTCTGCGCGTCAACCCGCAATACGCAGGCTTCGTGCGTCGCG CTGATACCAGCGCCGACAACACCTTCATGCGCAACCAGTTGCAGGAAGCCCGCTGGTTCA TCAAGAGCCTGCAGAGCCGCAACGAAACGCTGATGAAGGTCGCCACGCAGATCGTGGAGC ATCAGCGCGGTTTCCTTGAGTACGGCGACGAGGCCATGAAGCCGCTCGTTCTGCACGATA TCGCCGAAGCGGTCGGCATGCACGAGTCGACGATCTCGCGAGTAACCACGCAGAAATTCA TGCACACCCCACGCGGTATTTACGAGCTGAAATACTTCTTCTCGAGCCACGTGAGCACCT CCGAGGGCGGCGAATGCTCGTCCACGGCAATTCGCGCAATCATCAAAAAACTGGTGGCTG CGGAAAATCAGAAAAAGCCGTTGAGTGATAGCAAGATCGCTGGTTTACTGGAGGCAAAAG GCATTCAAGTAGCCCGTCGCACAGTCGCCAAGTACCGCGAGTCACTCGGGATAGCGCCTT CCAGTGAGCGTAAGCGATTGATGTGATGCAGGCCGAGCCAAAGCGTCCCAGCGGCAGGCA CCACGCCTGCCTCTTATGCACTGGCAAAGGAGAAAACTGTATGCAAGTCAACATCAGTGG ACACCAACTGGAAGTGACCAAACCCCTTCGCGAGTACGTTGAGCTCAAGCTCAAAAAACT CGAGGGGCACTTTGACAAGATTACAAACGTGCAGGTCACGATGGCGGTCGAAAAGCTCAA ACAGAAGATCGAAGCCACGCTGCATATCCACGGTGGGGAGGTAGTTGCCAATGCTGAACA CGACGACATGTATGCAGCCATCGACCTGCTCACTGACAAGCTCGACAGACAATTGCTCAA GCATAAGGAAAAGCAGCAAAGCATCCTCAAAGGTGCGGCCGCTCGCTAACGCCCATTTAA ATGATCCTAATTGAAAATATCCTGACCCCCGGCCGTTCGCTCGTGAACGTGCCGGGAGGC AGCAAAAAGCGTGTACTCGAAGAAATCGCCAACCTGATCGGTCGTGAAGTACCGGGCATG GATTCGGACACGGTATTTGCAAGCCTCGTTGCCCGCGAAAAACTGGGATCGACCGGTTTC GGCAACGGCATTGCCATCCCTCACTGCCGCCTCGCCGGCTGTGACGAACCCGTCAGCGCG GTCATTCACCTCGCCACCCCCATAGACTTCGACGCCATCGATGGCGCTCCGGTAGACCTG CTTTTCGTGTTGCTGGTCCCGCAAGCCGCCACCGATGCACACCTGGAGCTGCTGCGCCAG ATCGCCAGCATGCTTGACCGCGCCGATGTGCGTGAACGCCTACGCAGTGCCAAAAGCGGT GAAGCGCTTTATCAAGTGGTGCTGGACGTGCAGAACGGCCACTGACCATGCGCATGATCA TCGTCAGCGGCCGTTCCGGCTCAGGCAAGAGTACGGCGCTCGACGTACTGGAAGACAACG GCTTCTATTGCGTTGACAACCTGCCAGCCGGCCTGCTGCCAGAACTGGCCGAGCGCGCCT TGATCAATACCGAACTGGCTGAACCGCTGCTGGCGGTCTCCATCGACGCGCGCAATCTGC CCAGCCACCTCACACGCTTCCCGCAGATGCTGGATGAAGTGCGCTCACGCAATATCCAGT GTGACGTGCTTTACCTGGATGCCGACGAAGCCACACTGCTCAAACGCTTCTCGGAGACCC GTCGTCGCCACCCGCTGAGCACAGCGGACCGTTCGCTGGCTGAGGCGATACGGGACGAGA CCACCCTGCTCGGCCCGATCATCGACCTGGCCGACCTGAAGATCAACACCACTCACCTGA ACCTGTACCAGCTGCGTGACGCACTGAAACTGCGCCTGCTGAACAAGCCCGAGCCGGGTA CTGCGTTCCTGATCGAGTCATTCGGCTTCAAGCGTGGCATGCCTGTCGATGCAGACTTGG TGTTTGACGTGCGTTGCCTGCCCAACCCCTACTGGAAGCCTGAACTGCGCGACCATTCGG GCCTGGAGCAACCGGTTATCGACTACCTGTCCGCGCAGGCCGATGTAGAAGAGATGTTCC AGGATATCTTCTCCTACCTCAATAAATGGCTGCCGCGCTTTGCAGCCAGCAACCGCTCCT ACGTTACCATTGCCATCGGTTGCACCGGCGGGCATCACCGCTCCGTCTACCTGACAGAAC GGCTTGGCCAGGTCTTGCAACAATCACTCAAGAACGTTCAGGTCCGCCACCGCGACCTTA GCTGA
Region Details
| Region | 1 |
| Region Length | 7.8Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 7471-15335 |
| # tRNA | 0 |
| # Total Proteins | 10 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 1 |
| Phage + Hypothetical Protein % | 70% |
| # Bacterial Proteins | 3 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Coryne_SamW_NC_048069(1) PHAGE_Serrat_BF_NC_041917(1) PHAGE_Escher_Murica_NC_041871(1) PHAGE_Coryne_Adelaide_NC_048791(1) PHAGE_Bacill_G_NC_023719(1) PHAGE_Strept_YDN12_NC_028974(1) PHAGE_Bacill_SPbeta_NC_001884(1) PHAGE_Synech_Bellamy_NC_047838(1) PHAGE_Pectob_PM2_NC_028940(1) PHAGE_Edward_PEi20_NC_028683(1) PHAGE_Escher_V18_NC_041937(1) PHAGE_Plankt_PaV_LD_NC_016564(1) PHAGE_Escher_APCEc02_NC_041869(1) PHAGE_Escher_slur16_NC_028248(1) PHAGE_Coryne_StAB_NC_048780(1) PHAGE_Yersin_vB_YenM_TG1_NC_028820(1) PHAGE_Serrat_CHI14_NC_041996(1) PHAGE_Coryne_Lederberg_NC_048790(1) PHAGE_Yersin_phiR1_RT_NC_019909(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 10% |
| GC % | 57.91% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Region DNA
>2 71268-77708 TCAAGCCTGCTCGTTGATTGACGGCGTTGCAGGCGATGGTGCCTTGCTGACCACGACCAT GGCCGGGCGCAGCAGACGACCATTAAGCTGATAACCCTTCTGGAATACCTTGAGCACAGT ATTAGGCTCGACATCGGCACTTTCCTGCATGGCCATTGCCTGGTGCTGGTCGGCACTGAA CGGTTGACCATGCGGATCAATGGCTTCCAGCTGATAACGCTTGAGGGTGTCCTGGAACAT CTTCAAGGTCAGCTCGATGCCTTCACGCATCGGGCGAATGCTTTCATCGTCCGGGTTGGA CAGATCAAGGCCTCGCTCCAGACTGTCGATGATCGGCAACAGATCACCGGCAAATTTTTC CAGCGCAAACTTGTGCGCCTTTTCAACATCCTGTTCGGCACGGCGGCGGACATTCTGCAA ATCCGCAGCCACCCGAAGGGATTGGTCCTGCGCAGCAGCCAGTTGCTCTTCGAGCACCTG CACACGGGTTGTCAGTTCTTCACCCGCGCCTGCCTCGGCAGCCTGATCCTGAGCCTGCGC ATCCAGATTCTGTTCGTCAGCCATAAATATTCTCCTCTAAAAACGTCCGCGATCCCGACT CGCGCTTCTGCCACCTATATGGGATCGGAATTTACCGCTTCAAGGGTCTGATGTGATCGA GATACGTATTCCCTGACAAAAAAACCGGATATGGGGCCAGAAAAAAATGGCGCCATGAAG CAACCGGTACTAAAAAACACTGAAAGCAGACCAAATCGAGCTAAGCAGGGGCATTGTCAG TCACGAACAAAATACTGTATAAATATCCAGACAAACAGCCCGGGAGCCGCTCAATGCTGG TGCACCTTTCCGTACACAACTACGCCATCGTCGAACACCTTGATCTGGAACTGGATCGAG GCATGAGCGTTATTACTGGCGAAACCGGTGCCGGCAAGTCGATCATGCTCGACGCCCTGG GCCTGACCCTGGGCGACCGGGCCGACAGCGGCGTGGTCAGGCCGGGTGCCGACAAGGCAG ACATCCTTGCCACGTTCGATCTGGGCGACATTCCCGAGGCCGAGGCCTGGCTCAAAGAGC GCGACCTCGACAACGACGGCCCCTGCATCCTGCGCCGGGTGATTACCGCCGAAGGTCGCT CGCGCTCTTACATCAATGGCTCGCCCTGCCCTCAGGGAGACTTGAAGGCGCTGGGCGAAC TGCTCATCGATATCCACAGCCAGCACGAGCATCAGTCGCTGCTCAAGACCGACACCCACC GACGCCTGCTGGATGAATACGCGGGCGCGACCGACCTCGCCCGCCAGGTTCATCTTGCTG CGCAGCGCTGGCGGCAGACGCGACAGGAGCTGGAGCGCCTCTCCAACTCCGGCGACGAGC AACGCGCACGCCATCAACTGCTCAGCTACCAGCTTGAAGAACTGGAAAGCCTGAGCCTGG GCGAAAACGAGCTGGAGCAGCTCGAGCAGGAACACAAGGACCTGACCAACGCTGAAAGCC TGCTGAGCATTTGCCGACAGGTAGTCGAGCAATGCAGTGAAAGCGATTCCGGCAATGTAC TCACCGCCCTGACCGCCAGCCTGCATCGCCTTGGCAGCGTCGACCATTCACCTACGGCCC TGAGCGAGGCCACAGGCTTGCTGTCCAGCGCGCAGATCCAGGTAGAAGAAGCCGTGGGCG AGCTGAATCGCTTCCTGGATCACTTCGATGCCGATCCAGCCCGCTTGCAACAGCTTGAAG AGCGACTCGATGCTATCTATACGCTGGCGCGCAAGCACCGTATCCAGCCGGGCGAAGTGG CCACACTGCAACAAAAGCTGCTGGATGAAATAGAAACACTGAACGCCAACGACGAGTCCA TCGAGCGCCTGGAACATGAGGTGCAGGCGTTTGCCCGCCATTATCAGGAGAAAGCGCGCG AATTGAGCGACCGGCGTCATATGTCAGCGACCACTCTGGCCAATGCCGTCGAGCAGGAAA TTCATCGCCTGGGCATGCCGGGCGGACGCTTCCAGATCGACCTCAAACCCAACGTCAATG CCGAGCCGCTGCCTCACGGCCTTGAGCAGGTGGAGCTGCTGGTCAGCGCCAACCCCGGCC AACCACTGAAAGCGCTGGCCAAGGTTGCTTCGGGCGGCGAACTGTCACGGATCAGCCTTG CCATCCAGGTGATCACCGCACAAACCTCACGGGTGCCAACACTGGTGTTCGACGAAGTGG ATGTGGGCATCGGCGGCCCGACTGCCGAGATCGTGGGTCAGCTGCTGCGTCGCCTGGGCG AGCGTGGGCAAGTCATGACCGTCACGCATTTGCCGCAGGTTGCCGCGCAGGGCCACCAGC ATCTGTTCGTGCACAAGGTCAGGGATAACGACGCGACGCGCACGGCGGTCTCCAAACTGA CGAAAAACGAGCGTATAGAAGAAGTGGCCCGAATGCTGGGCGGCATCGACCTCACCAAGG AATCTTTGGCACACGCCAAGAAGATGGTCGTGACGGCTAAAACCTGAGCCACTGAAACGC AATCACTTAAACGCAATCACTTAAACGCAATCATAGAAAGCACAAAGGCGACCCTGGGTC GCCTTTGTGTCATCTGGTTTCACGCCTTTTTGTTGCGTACGTAAAGCACCAGATTGTGGT CCACCAGGTCAAAGCCGTGTCTTTCGACGATGGCTTTTTGAAGCTTCTCGATTTCTTCAT CGAAGAATTCGATCACCTCGCCTGATTCCACATTGACCATGTGGTCGTGATGGCCGCCAT CAGCCAGCTCAAACACAGCATGACCACCGTCGAAATTGTGGCGAACCACCAATCCCGCAG CTTCAAACTGGGTCAGGACACGGTAAACCGTGGCCAGGCCGACGTCCTCGCTAGCCTCCA TCAGCGCCTTGTAAACATCCTCGGCACTCATGTGGCGCTGCTCGGCAGAATCGAGCATTT GGAGTATTTTAACCCTCGGTAGGGTTACCTTTAGTCCTGCTTTTCGTAGTTCGCTATTTT CAACCATGGTCAGCTTTCTCGCAGACGCTGCTTCGCAGCTTCTCTTAATGCAGGTATGAT CGGGGTTTACGTTGTCCCAGCCAAGATAGTGGAAGTCGCCCACCGATGCAAAACACCAAG CTCTTGCTAACCAGTTTCACCTTCGTGGGACTGCTCGCACTCGCCGGTTGTTCATTCCCC GGGGTTTACAAAATCGACATCCAGCAGGGTAATGTCGTCACGCAGGACATGATAGACCAG TTACGCCCCGGAATGACCCGGCGGCAAGTACGGTTTATCATGGGCAACCCCCTGTTGACC GACACCTTCCACGCCGATCGGTGGGATTACCTGTACAGCCTGCAGCCAGGTGGCGGTGAA CGCCAGCAGGAGCGTGTCAGCCTGATATTCAACGGCAATGACCAGCTCGTGAGCCTGTCC GGCGACTTCATGCCAGGCGTCAGCCGCGATGAAGCCATTCTCGGCAAAGGCAGCGATACC ACTGCGCCGGTAGAGAATCAGCCGCAGCAGCCGCCTGAACAACCAGCCAACCCAGGCTCG CTGCTGGACACCATCCAGAAGGACGTCGACAGCGTCGAGACCGTACCGGTCCCGACTCAA GAGCCACTGGACACTAACACCCGTTAGTCGTCAGCCGCTCAGCAAAAAGCCCGGCACGCC GGGCTTTTTTGTGTGTTTCATTCAGCCGGCGTTCAGCCCGGCAGCGTTCTTTTTTCACGC GCTTTGGCAGCGCGCAGACGCCTGATTTCCATCGGGTCAGCCAGCAAGGGGCGATAAATC TCGATTCGCTCACCCGCCTCCAGCACTCGCGCAGCAGGGTCAGCGACCACCTTGCCGAAA ATACCCACAGGGCACTGCGCCAGATCCAGCTCGGGAAACTCCCGATCCATGCCACACAGC GCCAGCGCCTGACGCACCGACGAGCCTGCCGGCACATCGACCGTCATCAACACCTGACGC TGAACCGTGGCATACACCACTTCGATCTGAATCGACGCCTCAGCCATGCAGCTCTTTCGC TCGCTGGCAGAATGCGTCCACCAGCGTGTTGGCCGCTTGATTGAACAACGGCCCCAGCGT GGCGCGCACAATCGTTCCGGCGTAATCGAAAGACAAATCCAGGCTGATCTTGCAGGCCTT TTCACCCAGCGGCTTGAACGTCCAGACGCCATGAAACTGCTCGAACGGCCCCTCGACCAG ATCCATCACGATCGATTCGCCAGGGATCAGCGTATTGCGCGTCATGAACTTCTGACTCAG ACCGCCCTTGGCGATTTCCAGGCTAGCGCGCATTTGCGACTCGCTGGCGTCAAGCACGGT AGCGGAAGAGCACCACGGCAGAAACTCGGGATAACGAGCCACGTCATTGACCAGGTCATA AAGGAAACCGGCCGGGTACGGCAGTAAAGCAGAGCGTTGTATGTGCGTAGTCATGTGAGC GTCATTTCCAGAGCTGAGCGGCAAACACCACAAGAATGCCGAGCGGCGCCACGTAGCGCA TCAAAAAGAACGTCAGGTTGAAGAGCAGCGGACTGCGAATCGACAATTCGTCGCGCACCG CCTCACGGCTCATCACCCAACCAGCGAATACTACAAAACACAACCCACCCAGCGGCAACA TGACCCGCGAGGTGAAGAAATCAATGACTCCGAAGAAGTCCAGGCCATTCGATGCGCCCC ATTGATAGAGGTGGAATACGCCTCCATCGTTCACGAAGAACTTGGCTTTTTGCCAGATGT TGAACGAGAACACCGTTCCCAGACCGACAAACCAGCAGGTAAATGCCAGCCAGAACGTCA CCCAGGCACGGCGAATACGGGTGCGTTCGACCAGGTACGCAACCATCGGCTCAAGCAGCG AAATGGCCGAACTCCAGGCCGCAACCGCGACCAGCACAAAGAACACCACACCCATCAACT GCCCGAACGCAACGTTACCAAACGCAAACGGCAGCGCGACAAACATCAGGCCCGGCCCCT CGCTCGGGCTCAGCCCTGCGGCAAAGACAATCGGGAATAGCGCCAAGCCGGCCAGCAGCG AAACAAAGGTGTCGAGCAGCGCGATGCCGACGACCGTCGTGCTGATGGAGGCGCCTTTGG TCATGTACGCGCCGTAGACCATGATCGAGCCAACGCCGACGCTCAGCGAGAAGAACGCAT GCCCCATCGCAGGGAGCAAGCCATCCAGCACCTTGTCAGGGTTGAAGTCGAACATGAAAT GCACGCCTTCCATGAAGTGCCCGGTGGTCAGGCTATAGCCCAACAGCGCCAGCATCAGCA GGAACAGCATGGGCATCATGATCCGCAAGCTGCGCTCCAGCCCTGCCTCGACGCCCTTAC CGATGACCACAGCCGACAGGAGCATAAAGACCGTGTGCCACAGGATCAGCCGCCAAGGGT CGGCAATCATCGCGCCGAAATACGCACCGACCTGATCCGCCGTCACGCCCTGAAAATCGC CACGTCCCATGTCGATGATGTAATCCAGCGACCAGCCGCCCACCACGCTATAGAAGGAGA GAATCAGCAGCGCGGTGATCATCCCGGCAAAAGCGCCCCACGACCAACGCGCCGAATGCC CCGCCTCGACCGCCAGCGTTTTGAGCGCATTCGCAGGACTGAGCCGCGAACGACGACCAA TCAGCGTCTCGGCGATCATCACCGGAATGCCGATCAGCGCGATGCACGCCAGAAATACCA GCACAAATGCGCCGCCGCCATAGGCACCGACCATGTACGGGAATTTCCAGATACTGCCCA GCCCCACGGCGGAGCCGGTGGCAGCCAGGATGAACACCCAGCGACTTGCCCTGCTACCGT GGACCGAAACCTTGTCCGTCGACATTATTGAAACGCCCAGCCAAAAAAGATCGCGCATTG TCCGGGATTCAACCTTTGTGCTCAAGCACACGCTTTCCCGTAGCCGACATTGATGCAACT CCCTATAATGCGCCCCCTATGGCTAAGCTCAAGAAACACCCTACAGGGACCATCGCGCAG AACAAAAAGGCGCGCCACGATTACTTCATCGAACACAAGTTCGAGGCCGGTCTGGTCCTG TCTGGCTGGGAAGTAAAAAGCCTGCGTGCCACCAAGGTACAGCTGGTTGACAGTTACGTG CTGCTCAAGGACGGCGAGGCCTGGTTGATGGGTTGCCACATCACGCCTCTCAAAACTGCC AGCACGCACGTCATCGCTGACCCGACACGCACCCGTAAACTGCTCCTGAACCAGCGCGAG CTCGAAAAGCTCACCAGCTCGGTTCAGCAAAAAGGCTACGCCTGCGTCGCCCTTTCCATT TACTGGAAGCAGCACTTGATCAAGTGCGAAATTGCTTTGGGTAAGGGTAAAAAGGAATAC GACAAGCGCCACACCGAACGCGAACGCGATTCGGACCGTGAGCTGCAGCGTGCCGTGCGC ACCAAGGGCAAGGACGACTAG
Region Details
| Region | 2 |
| Region Length | 6.4Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | tail |
| Region Position | 71268-77708 |
| # tRNA | 0 |
| # Total Proteins | 8 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 75% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 1 |
| Most Common Phage Name(hit genes count) | PHAGE_Escher_500465_1_NC_049342(6) PHAGE_Klebsi_ST15_OXA48phi14.1_NC_049454(1) PHAGE_Klebsi_ST437_OXA245phi4.1_NC_049448(1) PHAGE_Staphy_StauST398_5_NC_023500(1) |
| First Most Common Phage # | 6 |
| First Most Common Phage % | 75% |
| GC % | 58.07% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|AOJR01000197.1| Pseudomonas syringae pv. actinidiae ICMP 19073 scaffold1, whole 105639, gc%: 58.70%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 10 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(7471..8280) | PHAGE_Bacill_G_NC_023719: gp245; A262_09786; phage(gi593777701) | 2.07e-29 | Showinfo_outline |
| 2 | 8585..9559 | PHAGE_Serrat_CHI14_NC_041996: putative transcriptional regulator; A262_09791; phage(gi100045) | 4.34e-22 | Showinfo_outline |
| 3 | 9574..10098 | PHAGE_Synech_Bellamy_NC_047838: hypothetical protein; A262_09796; phage(gi100204) | 9.73e-13 | Showinfo_outline |
| 4 | 10107..10679 | hypothetical protein; A262_09801 | 0.0 | Showinfo_outline |
| 5 | 10666..11214 | ostA family protein; A262_09806 | 0.0 | Showinfo_outline |
| 6 | 11215..11940 | PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; A262_09811; phage(gi371496158) | 2.60e-20 | Showinfo_outline |
| 7 | 12123..13616 | RNA polymerase factor sigma-54; A262_09816 | 0.0 | Showinfo_outline |
| 8 | 13691..13999 | PHAGE_Escher_V18_NC_041937: hypothetical protein; A262_09821; phage(gi100136) | 1.55e-08 | Showinfo_outline |
| 9 | 14011..14475 | PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; A262_09826 | 0.0 | Showinfo_outline |
| 10 | 14478..15335 | PHAGE_Coryne_Adelaide_NC_048791: hypothetical protein; A262_09831; phage(gi100059) | 1.99e-05 | Showinfo_outline |
Sequence
>complement(7471..8280)
PseudomonassyringaepvactinidiaeICMP19073MSPDDAYAVELKGVSFKRGTRSIFNNVGIRIPRGKVTGIMGPSGCGKTTLLRLMGAQLRPSEGQVLVNGQNLPELSRSDLFDARKQMGVLFQSGALFTDLDVFENVAFPLRVHTELPEEMIRDIVLLKLQAVGLRGAVELMPDELSGGMKRRVALARAIALDPQILMYDEPFVGQDPIAMGVLVRLIRLLNDALGITSIVVSHDLSETASIADYLYVVGDGQVLGQGTPEELMSSDNPRIRQFMTGEPDGPVPFHYPAPDFREDLLGKR
Sequence
>8585..9559
PseudomonassyringaepvactinidiaeICMP19073MNQSSDLIQSAQRTIRLEIEAIQGLLERLDGDFVRACEMILASKGRVVVVGMGKSGHVGKKIAATLASTGTTSFFVHPAEASHGDMGMITRDDIILALSNSGSTNEIVTLLPLIKRLGIRMISLTGDPESILARAADINLNAHVVHEACPLNLAPTSSTTAALVMGDALAVALLDARGFTAEDFAFSHPGGALGRRLLLKVENVMHSGDALPSVQRGTLLRDALLEMTRKGLGMTAILEADGTLAGIFTDGDLRRTLDRPVDIRQTTIDEVMTLHGKTAHADMLAAQALKIMEDNKISALVVVDQNDKPVGAFNLQDLLRAGVM
Sequence
>9574..10098
PseudomonassyringaepvactinidiaeICMP19073MTQDLMQRGKAIKLAVFDVDGVLTDGRLYFMEDGSEIKTFNTLDGQGIKMLIASGVTTAIISGRKTSIVERRAKSLGIAHLFQGREDKLVVLDQLLAELKLDYEQVAYLGDDLPDLPVIRRVGLGMAVANAAGFVREHAHGITRARGGEGAAREFCELILSAQGNLEAAHSAYL
Sequence
>10107..10679
PseudomonassyringaepvactinidiaeICMP19073MFTKKIRKFLLFGVLAVLLAAVGYWNISPESFMDRPITSVDDTVIDYYAINTRSVQYLPDGTLQYDMTADKVEHVKATDVSLLTTPNLHMYRGGEFPWHVNSKRGEVSSAGDQVELIDDVRVERTDEKQRTTIITSSRMTVFPQKEYAQTDQDVRIDGAGGVTTAKGMKAYLKDSRMDLLSNVRGQYEAR
Sequence
>10666..11214
PseudomonassyringaepvactinidiaeICMP19073MRLVKTLPLLLGLSAALGSASAWSLPNDRDQPIHIQSDDAQLDDKKGVATYKGNVIITQGSMKITGNTVTITRNAQGEVDVFTSVGNLAYYEQKPAVDKPIVQAYAITIQYYAGQDRIVLIDKAKVINDGNTSEGEKIVYDTVRQVVSAGRANGGAKVTTPRPRIDMVIQPKKKTDQPQKAP
Sequence
>11215..11940
PseudomonassyringaepvactinidiaeICMP19073MATLKAQHLAKSYKSRQVVRDVSISIDSGQIVGLLGPNGAGKTTCFYMIVGLVQADQGRVLIDDLDISHQPMHGRARAGIGYLPQEASIFRKLSVSDNIMAILETRKELDAGARRKELESLLQEFHITHIRDNLGMSLSGGERRRVEIARALATSPKFILLDEPFAGVDPISVGDIKQIIHHLKAKGIGVLITDHNVRETLDICETAYIVNDGQLIAEGDSETILANELVKEVYLGHEFRL
Sequence
>12123..13616
PseudomonassyringaepvactinidiaeICMP19073MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNSDPLADNIEQKPNPDVQEPTYQESAPTVDNLEDGEWSERIPNELPVDTAWEDVYQTSASSLPSNDDDEWDFTTRTSAGESLQSHLLWQLNVAPMSDKDRLVAVTLIDCINNQGYLDETLEEILESFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLTEAQRLVTDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVIPDVIVRKDNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAKGIQVARRTVAKYRESLGIAPSSERKRLM
Sequence
>13691..13999
PseudomonassyringaepvactinidiaeICMP19073MQVNISGHQLEVTKPLREYVELKLKKLEGHFDKITNVQVTMAVEKLKQKIEATLHIHGGEVVANAEHDDMYAAIDLLTDKLDRQLLKHKEKQQSILKGAAAR
Sequence
>14011..14475
PseudomonassyringaepvactinidiaeICMP19073MILIENILTPGRSLVNVPGGSKKRVLEEIANLIGREVPGMDSDTVFASLVAREKLGSTGFGNGIAIPHCRLAGCDEPVSAVIHLATPIDFDAIDGAPVDLLFVLLVPQAATDAHLELLRQIASMLDRADVRERLRSAKSGEALYQVVLDVQNGH
Sequence
>14478..15335
PseudomonassyringaepvactinidiaeICMP19073MRMIIVSGRSGSGKSTALDVLEDNGFYCVDNLPAGLLPELAERALINTELAEPLLAVSIDARNLPSHLTRFPQMLDEVRSRNIQCDVLYLDADEATLLKRFSETRRRHPLSTADRSLAEAIRDETTLLGPIIDLADLKINTTHLNLYQLRDALKLRLLNKPEPGTAFLIESFGFKRGMPVDADLVFDVRCLPNPYWKPELRDHSGLEQPVIDYLSAQADVEEMFQDIFSYLNKWLPRFAASNRSYVTIAIGCTGGHHRSVYLTERLGQVLQQSLKNVQVRHRDLS
Region 2, total 8 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(71268..71831) | PHAGE_Escher_500465_1_NC_049342: tail assembly protein; A262_10076; phage(gi100053) | 4.10e-23 | Showinfo_outline |
| 2 | 72101..73774 | PHAGE_Escher_500465_1_NC_049342: putative single-stranded DNA binding protein; A262_10081; phage(gi100050) | 6.41e-149 | Showinfo_outline |
| 3 | complement(73867..74274) | ferric uptake regulation protein; A262_10086 | 0.0 | Showinfo_outline |
| 4 | 74373..74894 | PHAGE_Escher_500465_1_NC_049342: recombination protein; A262_10091; phage(gi100049) | 5.63e-15 | Showinfo_outline |
| 5 | complement(74960..75274) | PHAGE_Escher_500465_1_NC_049342: exonuclease; A262_10096; phage(gi100048) | 7.69e-14 | Showinfo_outline |
| 6 | complement(75267..75701) | PHAGE_Escher_500465_1_NC_049342: primase; A262_10101; phage(gi100047) | 1.60e-41 | Showinfo_outline |
| 7 | complement(75709..77112) | sodium-dependent transporter; A262_10106 | 0.0 | Showinfo_outline |
| 8 | 77226..77708 | PHAGE_Escher_500465_1_NC_049342: HNH endonuclease; A262_10111; phage(gi100046) | 7.18e-58 | Showinfo_outline |
Sequence
>complement(71268..71831)
PseudomonassyringaepvactinidiaeICMP19073MADEQNLDAQAQDQAAEAGAGEELTTRVQVLEEQLAAAQDQSLRVAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPIIDSLERGLDLSNPDDESIRPMREGIELTLKMFQDTLKRYQLEAIDPHGQPFSADQHQAMAMQESADVEPNTVLKVFQKGYQLNGRLLRPAMVVVSKAPSPATPSINEQA
Sequence
>72101..73774
PseudomonassyringaepvactinidiaeICMP19073MLVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDRADSGVVRPGADKADILATFDLGDIPEAEAWLKERDLDNDGPCILRRVITAEGRSRSYINGSPCPQGDLKALGELLIDIHSQHEHQSLLKTDTHRRLLDEYAGATDLARQVHLAAQRWRQTRQELERLSNSGDEQRARHQLLSYQLEELESLSLGENELEQLEQEHKDLTNAESLLSICRQVVEQCSESDSGNVLTALTASLHRLGSVDHSPTALSEATGLLSSAQIQVEEAVGELNRFLDHFDADPARLQQLEERLDAIYTLARKHRIQPGEVATLQQKLLDEIETLNANDESIERLEHEVQAFARHYQEKARELSDRRHMSATTLANAVEQEIHRLGMPGGRFQIDLKPNVNAEPLPHGLEQVELLVSANPGQPLKALAKVASGGELSRISLAIQVITAQTSRVPTLVFDEVDVGIGGPTAEIVGQLLRRLGERGQVMTVTHLPQVAAQGHQHLFVHKVRDNDATRTAVSKLTKNERIEEVARMLGGIDLTKESLAHAKKMVVTAKT
Sequence
>complement(73867..74274)
PseudomonassyringaepvactinidiaeICMP19073MVENSELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEASEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFELADGGHHDHMVNVESGEVIEFFDEEIEKLQKAIVERHGFDLVDHNLVLYVRNKKA
Sequence
>74373..74894
PseudomonassyringaepvactinidiaeICMP19073MQNTKLLLTSFTFVGLLALAGCSFPGVYKIDIQQGNVVTQDMIDQLRPGMTRRQVRFIMGNPLLTDTFHADRWDYLYSLQPGGGERQQERVSLIFNGNDQLVSLSGDFMPGVSRDEAILGKGSDTTAPVENQPQQPPEQPANPGSLLDTIQKDVDSVETVPVPTQEPLDTNTR
Sequence
>complement(74960..75274)
PseudomonassyringaepvactinidiaeICMP19073MAEASIQIEVVYATVQRQVLMTVDVPAGSSVRQALALCGMDREFPELDLAQCPVGIFGKVVADPAARVLEAGERIEIYRPLLADPMEIRRLRAAKAREKRTLPG
Sequence
>complement(75267..75701)
PseudomonassyringaepvactinidiaeICMP19073MTTHIQRSALLPYPAGFLYDLVNDVARYPEFLPWCSSATVLDASESQMRASLEIAKGGLSQKFMTRNTLIPGESIVMDLVEGPFEQFHGVWTFKPLGEKACKISLDLSFDYAGTIVRATLGPLFNQAANTLVDAFCQRAKELHG
Sequence
>complement(75709..77112)
PseudomonassyringaepvactinidiaeICMP19073MSTDKVSVHGSRASRWVFILAATGSAVGLGSIWKFPYMVGAYGGGAFVLVFLACIALIGIPVMIAETLIGRRSRLSPANALKTLAVEAGHSARWSWGAFAGMITALLILSFYSVVGGWSLDYIIDMGRGDFQGVTADQVGAYFGAMIADPWRLILWHTVFMLLSAVVIGKGVEAGLERSLRIMMPMLFLLMLALLGYSLTTGHFMEGVHFMFDFNPDKVLDGLLPAMGHAFFSLSVGVGSIMVYGAYMTKGASISTTVVGIALLDTFVSLLAGLALFPIVFAAGLSPSEGPGLMFVALPFAFGNVAFGQLMGVVFFVLVAVAAWSSAISLLEPMVAYLVERTRIRRAWVTFWLAFTCWFVGLGTVFSFNIWQKAKFFVNDGGVFHLYQWGASNGLDFFGVIDFFTSRVMLPLGGLCFVVFAGWVMSREAVRDELSIRSPLLFNLTFFLMRYVAPLGILVVFAAQLWK
Sequence
>77226..77708
PseudomonassyringaepvactinidiaeICMP19073MAKLKKHPTGTIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRATKVQLVDSYVLLKDGEAWLMGCHITPLKTASTHVIADPTRTRKLLLNQRELEKLTSSVQQKGYACVALSIYWKQHLIKCEIALGKGKKEYDKRHTERERDSDRELQRAVRTKGKDD
Pseudomonas syringae pv
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 105639 bps
Phages: 2
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: A262_09786 (Region 1)
Locus: A262_09786ORF Start: 7471
ORF Stop: 8280
Strand: Backward
Protein Sequence: MSPDDAYAVELKGVSFKRGTRSIFNNVGIRIPRGKVTGIMGPSGCGKTTLLRLMGAQLRPSEGQVLVNGQNLPELSRSDLFDARKQMGVLFQSGALFTDLDVFENVAFPLRVHTELPEEMIRDIVLLKLQAVGLRGAVELMPDELSGGMKRRVALARAIALDPQILMYDEPFVGQDPIAMGVLVRLIRLLNDALGITSIVVSHDLSETASIADYLYVVGDGQVLGQGTPEELMSSDNPRIRQFMTGEPDGPVPFHYPAPDFREDLLGKR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A262_09786, gp245, phage(gi593777701), PHAGE_Bacill_G_NC_023719
Homolog/Ortholog E-Value: 2.07e-29
Locus 2: A262_09791 (Region 1)
Locus: A262_09791ORF Start: 8585
ORF Stop: 9559
Strand: Forward
Protein Sequence: MNQSSDLIQSAQRTIRLEIEAIQGLLERLDGDFVRACEMILASKGRVVVVGMGKSGHVGKKIAATLASTGTTSFFVHPAEASHGDMGMITRDDIILALSNSGSTNEIVTLLPLIKRLGIRMISLTGDPESILARAADINLNAHVVHEACPLNLAPTSSTTAALVMGDALAVALLDARGFTAEDFAFSHPGGALGRRLLLKVENVMHSGDALPSVQRGTLLRDALLEMTRKGLGMTAILEADGTLAGIFTDGDLRRTLDRPVDIRQTTIDEVMTLHGKTAHADMLAAQALKIMEDNKISALVVVDQNDKPVGAFNLQDLLRAGVM
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A262_09791, putative transcriptional regulator, phage(gi100045), PHAGE_Serrat_CHI14_NC_041996
Homolog/Ortholog E-Value: 4.34e-22
Locus 3: A262_09796 (Region 1)
Locus: A262_09796ORF Start: 9574
ORF Stop: 10098
Strand: Forward
Protein Sequence: MTQDLMQRGKAIKLAVFDVDGVLTDGRLYFMEDGSEIKTFNTLDGQGIKMLIASGVTTAIISGRKTSIVERRAKSLGIAHLFQGREDKLVVLDQLLAELKLDYEQVAYLGDDLPDLPVIRRVGLGMAVANAAGFVREHAHGITRARGGEGAAREFCELILSAQGNLEAAHSAYL
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: A262_09796, hypothetical protein, phage(gi100204), PHAGE_Synech_Bellamy_NC_047838
Homolog/Ortholog E-Value: 9.73e-13
Locus 4: A262_09801 (Region 1)
Locus: A262_09801ORF Start: 10107
ORF Stop: 10679
Strand: Forward
Protein Sequence: MFTKKIRKFLLFGVLAVLLAAVGYWNISPESFMDRPITSVDDTVIDYYAINTRSVQYLPDGTLQYDMTADKVEHVKATDVSLLTTPNLHMYRGGEFPWHVNSKRGEVSSAGDQVELIDDVRVERTDEKQRTTIITSSRMTVFPQKEYAQTDQDVRIDGAGGVTTAKGMKAYLKDSRMDLLSNVRGQYEAR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: A262_09801, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: A262_09806 (Region 1)
Locus: A262_09806ORF Start: 10666
ORF Stop: 11214
Strand: Forward
Protein Sequence: MRLVKTLPLLLGLSAALGSASAWSLPNDRDQPIHIQSDDAQLDDKKGVATYKGNVIITQGSMKITGNTVTITRNAQGEVDVFTSVGNLAYYEQKPAVDKPIVQAYAITIQYYAGQDRIVLIDKAKVINDGNTSEGEKIVYDTVRQVVSAGRANGGAKVTTPRPRIDMVIQPKKKTDQPQKAP
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: A262_09806, ostA family protein
Homolog/Ortholog E-Value: N/A
Locus 6: A262_09811 (Region 1)
Locus: A262_09811ORF Start: 11215
ORF Stop: 11940
Strand: Forward
Protein Sequence: MATLKAQHLAKSYKSRQVVRDVSISIDSGQIVGLLGPNGAGKTTCFYMIVGLVQADQGRVLIDDLDISHQPMHGRARAGIGYLPQEASIFRKLSVSDNIMAILETRKELDAGARRKELESLLQEFHITHIRDNLGMSLSGGERRRVEIARALATSPKFILLDEPFAGVDPISVGDIKQIIHHLKAKGIGVLITDHNVRETLDICETAYIVNDGQLIAEGDSETILANELVKEVYLGHEFRL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A262_09811, ABC transporter, phage(gi371496158), PHAGE_Plankt_PaV_LD_NC_016564
Homolog/Ortholog E-Value: 2.60e-20
Locus 7: A262_09816 (Region 1)
Locus: A262_09816ORF Start: 12123
ORF Stop: 13616
Strand: Forward
Protein Sequence: MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNSDPLADNIEQKPNPDVQEPTYQESAPTVDNLEDGEWSERIPNELPVDTAWEDVYQTSASSLPSNDDDEWDFTTRTSAGESLQSHLLWQLNVAPMSDKDRLVAVTLIDCINNQGYLDETLEEILESFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLTEAQRLVTDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVIPDVIVRKDNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAKGIQVARRTVAKYRESLGIAPSSERKRLM
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: A262_09816, RNA polymerase factor sigma-54
Homolog/Ortholog E-Value: N/A
Locus 8: A262_09821 (Region 1)
Locus: A262_09821ORF Start: 13691
ORF Stop: 13999
Strand: Forward
Protein Sequence: MQVNISGHQLEVTKPLREYVELKLKKLEGHFDKITNVQVTMAVEKLKQKIEATLHIHGGEVVANAEHDDMYAAIDLLTDKLDRQLLKHKEKQQSILKGAAAR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: A262_09821, hypothetical protein, phage(gi100136), PHAGE_Escher_V18_NC_041937
Homolog/Ortholog E-Value: 1.55e-08
Locus 9: A262_09826 (Region 1)
Locus: A262_09826ORF Start: 14011
ORF Stop: 14475
Strand: Forward
Protein Sequence: MILIENILTPGRSLVNVPGGSKKRVLEEIANLIGREVPGMDSDTVFASLVAREKLGSTGFGNGIAIPHCRLAGCDEPVSAVIHLATPIDFDAIDGAPVDLLFVLLVPQAATDAHLELLRQIASMLDRADVRERLRSAKSGEALYQVVLDVQNGH
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: A262_09826, PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN
Homolog/Ortholog E-Value: N/A
Locus 10: A262_09831 (Region 1)
Locus: A262_09831ORF Start: 14478
ORF Stop: 15335
Strand: Forward
Protein Sequence: MRMIIVSGRSGSGKSTALDVLEDNGFYCVDNLPAGLLPELAERALINTELAEPLLAVSIDARNLPSHLTRFPQMLDEVRSRNIQCDVLYLDADEATLLKRFSETRRRHPLSTADRSLAEAIRDETTLLGPIIDLADLKINTTHLNLYQLRDALKLRLLNKPEPGTAFLIESFGFKRGMPVDADLVFDVRCLPNPYWKPELRDHSGLEQPVIDYLSAQADVEEMFQDIFSYLNKWLPRFAASNRSYVTIAIGCTGGHHRSVYLTERLGQVLQQSLKNVQVRHRDLS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: A262_09831, hypothetical protein, phage(gi100059), PHAGE_Coryne_Adelaide_NC_048791
Homolog/Ortholog E-Value: 1.99e-05
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Click on a sequence to see details.
Locus 1: A262_10076 (Region 2)
Locus: A262_10076ORF Start: 71268
ORF Stop: 71831
Strand: Backward
Protein Sequence: MADEQNLDAQAQDQAAEAGAGEELTTRVQVLEEQLAAAQDQSLRVAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPIIDSLERGLDLSNPDDESIRPMREGIELTLKMFQDTLKRYQLEAIDPHGQPFSADQHQAMAMQESADVEPNTVLKVFQKGYQLNGRLLRPAMVVVSKAPSPATPSINEQA
Homolog/Ortholog Species: Tail protein
Homolog/Ortholog Protein: A262_10076, tail assembly protein, phage(gi100053), PHAGE_Escher_500465_1_NC_049342
Homolog/Ortholog E-Value: 4.10e-23
Locus 2: A262_10081 (Region 2)
Locus: A262_10081ORF Start: 72101
ORF Stop: 73774
Strand: Forward
Protein Sequence: MLVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDRADSGVVRPGADKADILATFDLGDIPEAEAWLKERDLDNDGPCILRRVITAEGRSRSYINGSPCPQGDLKALGELLIDIHSQHEHQSLLKTDTHRRLLDEYAGATDLARQVHLAAQRWRQTRQELERLSNSGDEQRARHQLLSYQLEELESLSLGENELEQLEQEHKDLTNAESLLSICRQVVEQCSESDSGNVLTALTASLHRLGSVDHSPTALSEATGLLSSAQIQVEEAVGELNRFLDHFDADPARLQQLEERLDAIYTLARKHRIQPGEVATLQQKLLDEIETLNANDESIERLEHEVQAFARHYQEKARELSDRRHMSATTLANAVEQEIHRLGMPGGRFQIDLKPNVNAEPLPHGLEQVELLVSANPGQPLKALAKVASGGELSRISLAIQVITAQTSRVPTLVFDEVDVGIGGPTAEIVGQLLRRLGERGQVMTVTHLPQVAAQGHQHLFVHKVRDNDATRTAVSKLTKNERIEEVARMLGGIDLTKESLAHAKKMVVTAKT
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A262_10081, putative single-stranded DNA binding protein, phage(gi100050), PHAGE_Escher_500465_1_NC_049342
Homolog/Ortholog E-Value: 6.41e-149
Locus 3: A262_10086 (Region 2)
Locus: A262_10086ORF Start: 73867
ORF Stop: 74274
Strand: Backward
Protein Sequence: MVENSELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEASEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFELADGGHHDHMVNVESGEVIEFFDEEIEKLQKAIVERHGFDLVDHNLVLYVRNKKA
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: A262_10086, ferric uptake regulation protein
Homolog/Ortholog E-Value: N/A
Locus 4: A262_10091 (Region 2)
Locus: A262_10091ORF Start: 74373
ORF Stop: 74894
Strand: Forward
Protein Sequence: MQNTKLLLTSFTFVGLLALAGCSFPGVYKIDIQQGNVVTQDMIDQLRPGMTRRQVRFIMGNPLLTDTFHADRWDYLYSLQPGGGERQQERVSLIFNGNDQLVSLSGDFMPGVSRDEAILGKGSDTTAPVENQPQQPPEQPANPGSLLDTIQKDVDSVETVPVPTQEPLDTNTR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A262_10091, recombination protein, phage(gi100049), PHAGE_Escher_500465_1_NC_049342
Homolog/Ortholog E-Value: 5.63e-15
Locus 5: A262_10096 (Region 2)
Locus: A262_10096ORF Start: 74960
ORF Stop: 75274
Strand: Backward
Protein Sequence: MAEASIQIEVVYATVQRQVLMTVDVPAGSSVRQALALCGMDREFPELDLAQCPVGIFGKVVADPAARVLEAGERIEIYRPLLADPMEIRRLRAAKAREKRTLPG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A262_10096, exonuclease, phage(gi100048), PHAGE_Escher_500465_1_NC_049342
Homolog/Ortholog E-Value: 7.69e-14
Locus 6: A262_10101 (Region 2)
Locus: A262_10101ORF Start: 75267
ORF Stop: 75701
Strand: Backward
Protein Sequence: MTTHIQRSALLPYPAGFLYDLVNDVARYPEFLPWCSSATVLDASESQMRASLEIAKGGLSQKFMTRNTLIPGESIVMDLVEGPFEQFHGVWTFKPLGEKACKISLDLSFDYAGTIVRATLGPLFNQAANTLVDAFCQRAKELHG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A262_10101, primase, phage(gi100047), PHAGE_Escher_500465_1_NC_049342
Homolog/Ortholog E-Value: 1.60e-41
Locus 7: A262_10106 (Region 2)
Locus: A262_10106ORF Start: 75709
ORF Stop: 77112
Strand: Backward
Protein Sequence: MSTDKVSVHGSRASRWVFILAATGSAVGLGSIWKFPYMVGAYGGGAFVLVFLACIALIGIPVMIAETLIGRRSRLSPANALKTLAVEAGHSARWSWGAFAGMITALLILSFYSVVGGWSLDYIIDMGRGDFQGVTADQVGAYFGAMIADPWRLILWHTVFMLLSAVVIGKGVEAGLERSLRIMMPMLFLLMLALLGYSLTTGHFMEGVHFMFDFNPDKVLDGLLPAMGHAFFSLSVGVGSIMVYGAYMTKGASISTTVVGIALLDTFVSLLAGLALFPIVFAAGLSPSEGPGLMFVALPFAFGNVAFGQLMGVVFFVLVAVAAWSSAISLLEPMVAYLVERTRIRRAWVTFWLAFTCWFVGLGTVFSFNIWQKAKFFVNDGGVFHLYQWGASNGLDFFGVIDFFTSRVMLPLGGLCFVVFAGWVMSREAVRDELSIRSPLLFNLTFFLMRYVAPLGILVVFAAQLWK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: A262_10106, sodium-dependent transporter
Homolog/Ortholog E-Value: N/A
Locus 8: A262_10111 (Region 2)
Locus: A262_10111ORF Start: 77226
ORF Stop: 77708
Strand: Forward
Protein Sequence: MAKLKKHPTGTIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRATKVQLVDSYVLLKDGEAWLMGCHITPLKTASTHVIADPTRTRKLLLNQRELEKLTSSVQQKGYACVALSIYWKQHLIKCEIALGKGKKEYDKRHTERERDSDRELQRAVRTKGKDD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: A262_10111, HNH endonuclease, phage(gi100046), PHAGE_Escher_500465_1_NC_049342
Homolog/Ortholog E-Value: 7.18e-58
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download