Submission Results
Sequence Name: Not Available
GenBank Accession Number: QVFA01000007.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: QVFA01000007.1.PHASTER.zip
gi|00000000|ref|QVFA01000007.1| Faecalibacterium prausnitzii strain AM39-7BH AM39-7BH.Scaf7, whole 180307, gc%: 59.72%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 9.3Kb | incomplete | 20 | 8 | 60837-70201 info_outline | PHAGE_Caulob_CcrColossus_NC_019406(2) | 63.03% | Show info_outline |
Region DNA
>1 60837-70201 TCAGGACAGCAGCGCGCTCCACCAGTCGCCCAGGCCGGTGCCCTCACTGCTGGAAGAATC GCCGCTGCTGGAAGAGCTGCCCCCGATCAGGCCGCTCCACCAATCGCCGGAGGAGCTGCC CGGCTGTTCAGCCGGGGTCTCAGGCACCGGCTCGGGGCCTGCGCTCACGGTAATGCTGAC ACGGCTGTTCACCTTAACGGTAGAACCTGCCGCCGGGCTCTGGCCGATGATGGTACCGGC GGGCTGGTCGCTGTACTGCTCGGTGGTGCTGCCAAGCCCCAGCTTGTTCTGCACCAGCAC GGAGCGGGCATCGTCCACACTCTTGAGGCCGGTCAGGGCAGGCACCTTGGCCGTGGTGTT GACCTGCGGGCGGCTGACATAGACCACCACTGTGGAGCCTGCGGCCACCTGACTGCCCGC AGCAGGTTCGGTGCGGATGATGGAGCCTGCGGCCACGCTGGGTTCCACCGCCTGGGTGAT CAAAACAGAGACCCCCAGATCCTTGAGCTGCTGCTCACCATCTGCCTGCACATAGTTGGA GACATCCGGCACGGTGACATACTGGATGCCCAGGCTGACGGTCAGGGTCACGCTCTGGCC CTCACGGACGGTACGGCCCGCCACCGGGGACTGCCGGTAGACGTAACCGGCGGCGTAATC GTTGCTGTAGGCCTGCTCCCAGTTGATGACGATCTGGCCGGATGCCACCTGCTGGGAAGC GTTGACCTCATCCTGGGTCATGCCGCTGTAATCTGCCAGCACCACATCAGCCTTTTCCCC CATCAGGGAGCTGGAATCATTCAGGATCATCCAGCACAGGGCCGCGCAGGCCAGTGCAAA GGCCACGGTGATGCCAAACAGCACCGGCAGGAACACGGTGCGCTTTTTCTTTTTTCTGCC TTTTGCCGGGGCACTGCCGCGCTCCGGACGGGATTCTTTTCTGGGCATAGGGGGTTCCAC CACCTTTTCAGGAATTTCATCGGGGAGATAGGTGTAGTTGAACACGATGGCCGGGTTCTC TACATAGGCGTTGAGGGCTTCCAGCATCTCAGCGGCGCTCTTGTAGCGGTTTTCGGGCCG CTTTGCCATGGCGCGCTCGGTGATCTCCACCAGCCCCACCGGCACCCAGGGAGCCAGTTC CCGCAGGCTCCTGGGCTGATCCGAGATCTGCTTGATGGCCACCTCCACCACGTCATCGGC ATCGAAGGGCAGATGCCCCGAGAGCATCTCGTACATCATCACGCCCACCGAATAGAGGTC GCTGGTGAAGTCTGTCTCATCGCCCTTGGCCTGCTCCGGGCTGATATAGTGGACGCTGCC CATGGCCTTGCCGCCTGAGAGCTGGTTCTCGGCCCGGGAGATGCGGGCAATGCCAAAATC CATCATCCGCAGCTGGCCGTTGTCCAGCAGCATGATGTTCTGGGGCTTGATGTCCCGGTG CACCACGCCGTTGCGGTGGGCATGATCCAGCGCTTTCAGGATCTGAGAGATAAAGTGGAC GGTCTCCCGGCTGGTCAGCTTGCCGCCCCGCTCGTTCAGATACTCGCGCAGGGTCATGCC GTCCACATATTCCATGACGATATACTGCAGATGGTCGCTCACCGAGACATCATACACCTT GACGATGTTGGGGTGGTTGAGCAGCGAGATGGCCTTGGACTCGTTCTTGAAACGGCGCAC AAGGTCGGGGTCGTGCATGAGCTCCTGCCGCAGCACCTTGACGGCCACGACCGTGCCCTC CGGCACCGGGCCGCCCGGCCCCACAACGGCCTTGTAGACATTGGCCATGCCGCCGGTGCC GATGAGCTCCCGCACCGTGTACAGGCCGTCCAGCGTTTTGCCGATCAGGTTATCCATGGT GCACCTCCGTAGGTTCCACAGCCAGCAGCAGGGCGGTGATGTTGTCGGAGCCGCCGTTCT CGTTGGCGGCATCCACCAGCCTGTCGGGCAGATCGTAGAACGGGCCCTGCGCCAGCAGCT GCTCCATCTGCTCCACCGGTACCATGTTGGTCAGGCCGTCCGAGCAGAGCAGCAGCAGAT CCTTTGCCTGCAGCTGCACCGAAGTGACCTCCGGCTCCAGCCGGTAATCCACGCCCAGCG CCCTGGTGATGATGTTCTTCTGGGGATGATGCTCGGCCTCCTCCTCCGTGATGGTGCCGC AGTCCACCAGCTCCTGCACATAGGAGTGGTCGTGGGTGAGCTGGGTCAGTTTACCGCCCC GGCAGAGGTAGGCGCGGGAATCGCCCGCGTGGCAGAGGGTGGCTTCCCCGCCCCGCACCA GTGCGCAGACCGCCGTGGTTCCCATACCGGCCAGCGATTCCTCGTGGGCGGCTTTGTTGA ACACATAGCGGTTGGCGCTGATGAGGGCCTTTTTCAAAAAAGCTCCCTCCTGCCCTGCTC CGCACTGGGCGTACTGCTCCTGAAACACCTGTTCGATGACATTGCAGGCCCCCTGTGAGG CCTCGCGGCCGCCTTTGGCACCGCCCATACCATCACACACCAGCGCCCAGACAGCACCGC CAGGCAGCTCCCCGGCACGGTAATCATCCTGATTTTCCTGCCGGACGCGGCCCACATCCG TTTTTCCTGCTAGTTTCATAGGCTTCTCCTCTTGCGATTTACGCCTTACCATTCATTTCG TCCCGGCGCAGCTGGCCGCAGGCGGCGCTGATCTCGCTGCCAAGACGGCGGCGTACCGTG GCGTTGACCCCCAGGCTCTCCAGCTTTTTCTGGAAGCGCTGGACATTGGCGGCATCGGTA GCCGAGTAGGGGCTTCCGTCCACCGGGTTGATGGGAATGAGGTTCACATGAGCACCCATG CCCCGGATGAGATCGGCCAGCTGTCTGGCACAGGCATCGGAATCATTGACACCGCGCACC ATCGAATACTCAAAGCTGACCCGGCGGCCCGTGGTCTCCTGATAGCGGCGGACGGCGGGC ATCAGCACCTCCACGGGGTAGGCATCATTGACCGGCATCATGCCGCTGCGGATCTCGTTG TTGGGGGCGTGCAGGGAGACCGAAAGGGTCAGCTGCAGCTTTTTCTCGGCCAGCTGGTCG ATCTTGGGCACCAGACCGCAGGTAGAAAGGCTGATGTTGCGCATTCCGATGTTCACGCCC TCCGGGGAGGAGATGTTCTCAAGGAAGCGCATGACCTCGTCAAAATTATCCAGCGGCTCC CCGATGCCCATGAGGACGATGTGGGAGATGCGCTCCCCGATGTCCTTCTGGGCGGTATAG ATCTCAGAGCAGATCTCACCGGCTTCCAGGTTGCGCACCCGGCCTGCCTGGGTGGAGGCG CAGAAGCGGCAGCCCATCCGGCAGCCCACCTGCGTGGAGACGCAGACCGTGTTGCCGTAG TGGTAGCGCATGACAACGGTCTCGATGCAGTTGCCATCGGCCATCCGCAGCAGATATTTC ACGGTGCCGTCCTTGGCTTCCTGCCGGCGCTCGATCTTGGGGGCAGCAATGTAAAACTGC TCTTCCAGCTTTGCCAGCAGGGTCTTGGGCTGGTCGGTCATGGCAGAAAACTCGGTGACC AGCTTCTGGTGCACCCAGTGGAAGATCTGCTTTGCCCGGAAGCCCGGCTGACCCATAGCT TTCAGTGCAGCGGTCAGCTCGGCCAGCGTCAGGGAAGAGATACAGCGTTTTTGTTCCATG GTATTCTCCTATGAATCAATACGAACCGGACGGCGGGTTCATTGCGTTTTCTGCATGGCG CAGAGGAAAAAGCCGTCCATCCCGGTGCGGGTGGGCACCGAGAGCACCCCGTGCTCCCCC ACTGTCATTCCGTCAGGGAACGCCACAGCGGGCCGGACCACCCGGAACTCCGGGTGGCGG ACAAGGAACGCCGCCACCTGCTCCTCGTTCTCAGCAGGGTCGATGGTACAGGTGGAGTAG ACCAGCCGCCCGCCCGCTTTCAGCAGAGCGGCTGCTGTGTCCAGAATGGACGACTGGGTG GCCAATAATTCATCGTGGCGTGCTTTTTCCAGCGTCTTATAGCGGATATCCGGCTTTTTT GCCAGAATACCCAGGCCGCTGCAGGGGGCATCCACCAGAATGCGGTCTGCGGCGGGCAGC TTTGGGTTGGGGCGGGTGGCATCATTGCAGAGGGCGGTGACATGGGCAAAGCCCATCCGT TCCACAGCGCTCCGGATGAGCCCGACCCGGTGCTCTGCCACATCGCAGCTGTACAGTGCG CCCTGCCCCTGCATTTCCTCGGCCAGCAGCAGCGTTTTGCCGCCGGGTGCCGCGCAGAGG TCGATCACGGTATCGCCGGGCTTTGCCTCCACACAGAGGGCTGCCAGCTGGCTGGCCTGC CCCTCCACATGGAAACAGCCCTCCTTGAAGAGCGGGTGCTCCGCCGGGCTGCCCTCGAAC TTTGCCAGCACACTGCCGGGCACAAGGCCGGGCTGCGCACTCTTCACGCCGCTTTCCAGC AGCTTTTCGCAGAGGGCCGCGGCATCCATTTTCAGGCAGTTGGCCCGCAGGCTGGTGCAG CCGCCGTCGGCGGTGTGGGTCAGGATGCCCAGCGCTTCCTCAGGGTAATGGGTGCGCAGG AACTCTGCCACATCCTGCCCCGCAGAGCCCAGCACCATGAGGCGCTGGGTCTCGTTCCGG AAGCGGGCAGTTTCCAGATCATAATTGCAGGCCTTGCGCAGGACGGCATTGACCAGCCCG GACGCACTCGCCTTTTTGAAGGTGCGGGTCAGCTTGACGGCCTCGTTCACCGCCGCCGAC ACCGGCACCTGCATATAGCGGGCCTGCGCCAGCGCGGCCCGCAGGATCTCGCGCACCTGC GGGTCCAGCCTGGCAAGGCCCTTGGGCAGGAACTGTTCCAGAATGAAATCCAGCGTGCCC TGATGTTCCAGCACGGTGTAGAAGATGGCACCGGCAAAGGCCTTATCCCGGCCCTCCAGT TTCTGGCGGCGGAGTTCGGCATCCAGCACAAGGTTTGAGAAGCCGTCCTGCTCCTGCCGG ACCAGTGCAGCCACTGCCGCCGCCCGCGGATTGGCCGCCATCAGAGGGTATCCCCCGCTT TGAGGCGCAGACCGGCCGCAAAGGAGGTGCCATCCATCGGCTTTTTGCCCTCAGGCACCA CATGGAGCAGCTGGACAGCACCATCGGCACAGGCCACCGTCAGGGGCTTTGTGGAAAGCA CCGTGCCGGGAGCCTCACCGTTGGAGGCGGCCACGCGGCACTCGGTCACCTTGACCTTTT TGCCGCCTGCGGTCACGAACCAGGCCATGGGCCAGGGGTTCATGCCGCGCACCCAGTTGT GGATGTGCGCGGCAGTATCGGTCAGCCTGAACTCTGCCAGCTCCTTGTCCAGCATGGGGG CCAGGGTGGCGTTCTCATGCTGCTGGGGCTGGGGCCTGAGGGTGCCAGCCTCCAGGGCGG GCACTGCCTCACAGAGGACGCGGGCACCTACGGCGGTGACCCGGTCGAACAGCTCGCCGC TGGTCTCCTCCGGGCCGATGGCGATCTTCTCGCAGACCAGCACATCGCCGGTGTCCAGCC CCTCGTCCATCTGCATGATGGAAACGCCGGTCTCGGTGTCGCCGTTCAGAACAGCCCACT GCACGGGGGCGCTGCCGCGGTACTTGGGCAGCAGGGACACATGCAGGTTGATGCAGCCAT ACTTCGGAGCTTCCAGCACGGATTTGGGCAGGATGCAGCCGTAGGCCACCACCACGATGA GGTCAGGGGCCAGCGCCCGGATGTTGGCATCCTCGCTGCCATCCCGCAGGGTGCGGGGCT GGAACACAGGGGTCCCATGCTCCAGAGCAACTTCCTTGACCGGGGGCGCGGTGAGCACCT GCTTGCGGCCCACCGGCTTATCCCGCCGGGTGTACACGCCGCAGATCTCGTGACCGGCAG CATACAGGGCCTTCAGGCACTCCGCGGCGATATCCGGGGTTCCCATGAACAGAATGCGCA TCAGTTGTTTCCTTTCGCTTCACGGGCAGCCTTTTTACCCTCCTCGGTGTCCTCGTAGAA ATACTCGCTGGACTCCATGATGGTAATGCCGTCCAGATGGTCATTCTCGTGCTGGATGCA GCGGGCCAGCAGGTTCTCGGCCTCCAGCTCGAACCAGTTGCCGTTGCGGTCCTGCGCGCG CACCTTGACGGCAGCGGGACGGGTCACGGCACCGTTGTGGCCGGGGAAGGACAGGCAGCC CTCGTAGGCGGTCTCCTCCTCCTCAGAAACAGCCAGGATCTCGGGGTTGACGAAGTCGAT GAACTTGTACTCATAATCCTCGGGGATCTCCTCGGGGGCATCGGTGGTGTCCCACACCAC GAACAGGCGGCGCAGCATGCCCACCTGAGGACCTGCCAGACCCACGCCGTCGGCGGCGAT CATCGTCTCCCGCATGTCATCCAGCAGGGTGGCAAGGCGGTCGTCAAAGTTGGTCACGGG GCGGCAGACCTTGTTCAGGATGGGGTCGCCCTCTTTTACGATATTGCGGATAGCCATAGT GGTACCTCCAAAATTTGTTGTGTTGTATCAGATATCCCCGTCCGAGTGCAGATCGACCAC AACGGTGGCCTTGCCGGGCAGTTTTTCCTGCTCGTAGAGGGTCAGCGTTTCCCGGATGAG GTTCCGGAAACGGCGGTCGTTGCGGCACTTGACGGTGAGTTTATAGCGGTAGGAATCGTT GATCTTTTCAATGCTGCCGGGGGTGGGGCCCAGCACCCGCAGGGGCAGGTCGGGCTGTTT GGCCGCCTGTCGGCCCAGCAGGGCCGCAAAGCGGGCAGAAGCCCGGGCCACCTCGCTCTC CTTTGGCCCGGCAAAACCCACAACGCAGAGCCCGCAGAAGGGCGGATAAAGCCCCAGTTT CCGGTAGGCGATCTCCTGCTCGAAGAATGCGTCGTAGTCCTGCGCGGCGGCAAGGTTGAG CACCGGGTTGTCCGGGTCGGTGGTCTGGATGATGGCAAAGCCGGGGTCTTTTGCCCGGCC GCTCCGGCCCACCACCTGCGTGACGAGGCTGAACACGGTCTCATAAGCCCGGAAGCCCTG GGCGAACAGGAGCGAATCGATGCCCAGCACACCCACCAGCGTCACATCCTCGAAATCCAG CCCCTTGGCCACCATCTGGGTGCCCACCATGATGTCATATTCATGCCGGGCAAACTTTGC CAGCAGCTTTTCATGGGCATCCTTGGCGGCGGTGGTATCCTGATCCATCCGCAGGATGCG GGCCTCCGGAAAGAGCTTTGCCAATTCCTCCTCGGCCTTCTGGGTGCCAAAGCCCCGGTA CTGCAGTTTTCCGCCGCAGGCGGGGCATCTGGCAGGGGGCTGGTCCAGCTGGCTGCCGCA GTAATGGCAGAGCAGCTTGTGGGCCGATTTGTGGTAGACCATGGGCACGCTGCACTTCTG GCATTTGAGCACCTCGCGGCAGTCCTCGCACTGAGCCACGGTCTGGTAACCCCGACGGTT GAGCAGCAGGATGGTCTGCTTGCCTGCCTCAAGGTTGTGCCGGATGGCATCCTCCATGGC AAGGCTGATCTCCCGGGGGTTGCCGGAGGCAAGCTCGGCCCGCATATCCACGATCTGGAC TTTGGGCAGCGGGTTGCCGCCATAGCGTTTGGTCAGGCGCACCAGCTGGGTGCGGCCATG CTGGGCGGCATAATAGCTCTCGGTGCTGGGGGTGGCGCTGGCCAGCAGGAGCAGGGCCCC GTTCTCCGCCGCGCGCTGCCGGGCCACCTCGTGGGCCGAGTAGCGGGGCGCGGATTCGGA GCGGTAGGTGTGCTCCTGCTCCTCATCAATGATGACAAGGCCGATGTTTTCCAGCGGGGA GAAGATCGCGCTGCGGGTGCCCACCACGATATCCGCGCCGCCGTCCTGGATCATCTGCCA TTGAAGCAGGCGCTCAGTGTGGTTGAGAGCGGAATGCTGCACGGCCACCCGCTTGCCAAA TTGGCTTTTCAGCCGCAGGATCATCTGAGGGGTCAGGCTGATCTCAGGCACCAGCACCAG CGCCCGGCGGCCCATCTGCAGACAGTGCTCGATGAGCTTCAGGAACACCAGCGTTTTTCC GCTGCCGGTCACGCCGTAGAGCAAGGCCGAGTGCGGGGCTGCATCCTCCAGCCCGGGCAG CAGCGCGTCATAGGCGGCCTGCTGCTCCTCCGTGAGAAGGATGGGCTCGTTCTTCAGCGG GATGGAAGAATACAGGTCGATGGATTTGTTCACCTTGCTGCATTCCAGCACGCCCTTGGC GCAGAGGTTGTCCAGCACTGCCCGGCTGATGCCCTTTTCCTCCAATGCAGACAGGGTGCG CTCTCCCCCGGCCAGCAGGGCCACTGCGGCCAGCTGCTTGGCGGTCGGCCTGGGCTTTGG GGGCAGCGTGCCCACCAGACGATAAGCATTTTCGGTGTGACGGATGAGCTGCTTTTGAAG CACCGGGGTCACGCCGTCCTCCGCCACGGTGGGCTTGTACTGCGCGCCGTAGGGAATGAC CGCCTTGACGGCCTCGTAGTAGGTGCAGAAGGTGCGCTCCTTCAGAAAGTGCACCAGCCG CAGCAGCTCCGGGGTGAGGCAGGCAGAGGCCGGGGCAACATCGAACAGGAACTTGAGCTT TGCGCTCTCCGGTTCGGCATCGCAGGCCAGCACCACACCCATCCGGGCACGGCTCCCCCG CCCGAAGGGCACCAGCACCATGCTGCCCAGCCGGACGGTATCCTGCTGGTCGGGCATGAC GGCATAGGTATAGAGTTTGTCGAAATGAAAGGTCGCGTTGCTCACTGCAACGCCTACCGT TTTTGGCATTCAGGCAGCTCCTTCAAAGCGTTTTAGCGGGTCAGGTCCGCACGCTGGCAG ATGACATCATAGAGCCTTGCAGCGCAGGCATCCACCTCGTCGTTGACCAGCTTGAGGGTG AATTTGTCCTGCTGGGCCAGCTCATTGCGGGCGATCTCCAGGCGCTCCCGGATGCTCTCC TCGCTCTCGGTGCCGCGGCCGCGCAGGCGGCGCTCCAGCTCCTGGGTGGAGGGGGGCAGC AGGAAGATGGTGGTGGCACCGGGATACATGCGGCGGATATTGGCCGCGCCATGCACATCG ATGACCATGACCACCAGCTTGCCCGCGTTCAGCCGCTTGTTGACCTCATCCTTCAGGGTG CCGTAGTAGTTGCCGTTGAAAAAATTGTGCTCCACGACCTCATCCTGATCGATGAGCTGC TGGAACTGCTCCTTGGTGCGGTAGTAGTAGTCTACCCCTTCCTGCTCCCCGGGGCGGGGG GAACGGGTGGTGGCAGAAACCGTTTTTTCGATCTCGGGGTGGGCCTTGCGCAAAGCGCTC ACCACACTGTCCTTTCCGGTACCGGCGGCACCGGAAACGACAAACAGATATTTTTCATTT TCCAT
Region Details
| Region | 1 |
| Region Length | 9.3Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | head |
| Region Position | 60837-70201 |
| # tRNA | 0 |
| # Total Proteins | 8 |
| # Phage Hit Proteins | 7 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 87.5% |
| # Bacterial Proteins | 1 |
| Attachment Site | no |
| # Phage Species | 7 |
| Most Common Phage Name(hit genes count) | PHAGE_Caulob_CcrColossus_NC_019406(2) PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007(1) PHAGE_Synech_S_SSM7_NC_015287(1) PHAGE_Prochl_P_SSM7_NC_015290(1) PHAGE_Entero_933W_NC_000924(1) PHAGE_Lactoc_949_NC_015263(1) PHAGE_Stx2_vB_EcoP_24B_NC_027984(1) PHAGE_Entero_Min27_NC_010237(1) PHAGE_Stx2_c_86_NC_008464(1) PHAGE_Synech_S_SKS1_NC_020851(1) PHAGE_Lactoc_phiL47_NC_023574(1) PHAGE_Liberi_SC2_NC_019550(1) PHAGE_Synech_ACG_2014f_NC_026927(1) PHAGE_Prochl_P_SSM2_NC_006883(1) PHAGE_Plankt_PaV_LD_NC_016564(1) PHAGE_Pseudo_201phi2_1_NC_010821(1) PHAGE_Burkho_phiE255_NC_009237(1) PHAGE_Synech_S_CAM7_NC_031927(1) PHAGE_Cronob_phiES15_NC_018454(1) PHAGE_Synech_S_WAM1_NC_031944(1) PHAGE_Lactoc_WRP3_NC_027341(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 25% |
| GC % | 63.03% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|QVFA01000007.1| Faecalibacterium prausnitzii strain AM39-7BH AM39-7BH.Scaf7, whole 180307, gc%: 59.72%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 8 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(60837..62693) | PHAGE_Entero_Min27_NC_010237: serine/threonine kinase; DW882_06840; phage(gi170783632) | 1.35e-22 | Showinfo_outline |
| 2 | complement(62686..63435) | PHAGE_Cronob_phiES15_NC_018454: putative serine/threonine phosphatase; DW882_06845; phage(gi401817585) | 6.63e-11 | Showinfo_outline |
| 3 | complement(63455..64495) | PHAGE_Pseudo_201phi2_1_NC_010821: Fe-S-cluster redox domain-containing protein; DW882_06850; phage(gi189490583) | 1.09e-13 | Showinfo_outline |
| 4 | complement(64535..65857) | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; DW882_06855 | 0.0 | Showinfo_outline |
| 5 | complement(65857..66777) | PHAGE_Prochl_P_SSM7_NC_015290: PRGA-formyltransferase; DW882_06860; phage(gi326784531) | 5.58e-15 | Showinfo_outline |
| 6 | complement(66777..67313) | PHAGE_Synech_S_CAM7_NC_031927: prohead core protein; DW882_06865; phage(gi100216) | 3.82e-18 | Showinfo_outline |
| 7 | complement(67344..69605) | PHAGE_Synech_S_WAM1_NC_031944: cytosine-specific methyltransferase; DW882_06870; phage(gi100124) | 2.70e-05 | Showinfo_outline |
| 8 | complement(69629..70201) | PHAGE_Liberi_SC2_NC_019550: guanylate kinase; DW882_06875; phage(gi423262548) | 8.22e-21 | Showinfo_outline |
Sequence
>complement(60837..62693)
FaecalibacteriumprausnitziiMDNLIGKTLDGLYTVRELIGTGGMANVYKAVVGPGGPVPEGTVVAVKVLRQELMHDPDLVRRFKNESKAISLLNHPNIVKVYDVSVSDHLQYIVMEYVDGMTLREYLNERGGKLTSRETVHFISQILKALDHAHRNGVVHRDIKPQNIMLLDNGQLRMMDFGIARISRAENQLSGGKAMGSVHYISPEQAKGDETDFTSDLYSVGVMMYEMLSGHLPFDADDVVEVAIKQISDQPRSLRELAPWVPVGLVEITERAMAKRPENRYKSAAEMLEALNAYVENPAIVFNYTYLPDEIPEKVVEPPMPRKESRPERGSAPAKGRKKKKRTVFLPVLFGITVAFALACAALCWMILNDSSSLMGEKADVVLADYSGMTQDEVNASQQVASGQIVINWEQAYSNDYAAGYVYRQSPVAGRTVREGQSVTLTVSLGIQYVTVPDVSNYVQADGEQQLKDLGVSVLITQAVEPSVAAGSIIRTEPAAGSQVAAGSTVVVYVSRPQVNTTAKVPALTGLKSVDDARSVLVQNKLGLGSTTEQYSDQPAGTIIGQSPAAGSTVKVNSRVSITVSAGPEPVPETPAEQPGSSSGDWWSGLIGGSSSSSGDSSSSEGTGLGDWWSALLS
Sequence
>complement(62686..63435)
FaecalibacteriumprausnitziiMKLAGKTDVGRVRQENQDDYRAGELPGGAVWALVCDGMGGAKGGREASQGACNVIEQVFQEQYAQCGAGQEGAFLKKALISANRYVFNKAAHEESLAGMGTTAVCALVRGGEATLCHAGDSRAYLCRGGKLTQLTHDHSYVQELVDCGTITEEEAEHHPQKNIITRALGVDYRLEPEVTSVQLQAKDLLLLCSDGLTNMVPVEQMEQLLAQGPFYDLPDRLVDAANENGGSDNITALLLAVEPTEVHHG
Sequence
>complement(63455..64495)
FaecalibacteriumprausnitziiMEQKRCISSLTLAELTAALKAMGQPGFRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKLEEQFYIAAPKIERRQEAKDGTVKYLLRMADGNCIETVVMRYHYGNTVCVSTQVGCRMGCRFCASTQAGRVRNLEAGEICSEIYTAQKDIGERISHIVLMGIGEPLDNFDEVMRFLENISSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSVSLHAPNNEIRSGMMPVNDAYPVEVLMPAVRRYQETTGRRVSFEYSMVRGVNDSDACARQLADLIRGMGAHVNLIPINPVDGSPYSATDAANVQRFQKKLESLGVNATVRRRLGSEISAACGQLRRDEMNGKA
Sequence
>complement(64535..65857)
FaecalibacteriumprausnitziiMAANPRAAAVAALVRQEQDGFSNLVLDAELRRQKLEGRDKAFAGAIFYTVLEHQGTLDFILEQFLPKGLARLDPQVREILRAALAQARYMQVPVSAAVNEAVKLTRTFKKASASGLVNAVLRKACNYDLETARFRNETQRLMVLGSAGQDVAEFLRTHYPEEALGILTHTADGGCTSLRANCLKMDAAALCEKLLESGVKSAQPGLVPGSVLAKFEGSPAEHPLFKEGCFHVEGQASQLAALCVEAKPGDTVIDLCAAPGGKTLLLAEEMQGQGALYSCDVAEHRVGLIRSAVERMGFAHVTALCNDATRPNPKLPAADRILVDAPCSGLGILAKKPDIRYKTLEKARHDELLATQSSILDTAAALLKAGGRLVYSTCTIDPAENEEQVAAFLVRHPEFRVVRPAVAFPDGMTVGEHGVLSVPTRTGMDGFFLCAMQKTQ
Sequence
>complement(65857..66777)
FaecalibacteriumprausnitziiMRILFMGTPDIAAECLKALYAAGHEICGVYTRRDKPVGRKQVLTAPPVKEVALEHGTPVFQPRTLRDGSEDANIRALAPDLIVVVAYGCILPKSVLEAPKYGCINLHVSLLPKYRGSAPVQWAVLNGDTETGVSIMQMDEGLDTGDVLVCEKIAIGPEETSGELFDRVTAVGARVLCEAVPALEAGTLRPQPQQHENATLAPMLDKELAEFRLTDTAAHIHNWVRGMNPWPMAWFVTAGGKKVKVTECRVAASNGEAPGTVLSTKPLTVACADGAVQLLHVVPEGKKPMDGTSFAAGLRLKAGDTL
Sequence
>complement(66777..67313)
FaecalibacteriumprausnitziiMAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRLFVVWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPAAVKVRAQDRNGNWFELEAENLLARCIQHENDHLDGITIMESSEYFYEDTEEGKKAAREAKGNN
Sequence
>complement(67344..69605)
FaecalibacteriumprausnitziiMPKTVGVAVSNATFHFDKLYTYAVMPDQQDTVRLGSMVLVPFGRGSRARMGVVLACDAEPESAKLKFLFDVAPASACLTPELLRLVHFLKERTFCTYYEAVKAVIPYGAQYKPTVAEDGVTPVLQKQLIRHTENAYRLVGTLPPKPRPTAKQLAAVALLAGGERTLSALEEKGISRAVLDNLCAKGVLECSKVNKSIDLYSSIPLKNEPILLTEEQQAAYDALLPGLEDAAPHSALLYGVTGSGKTLVFLKLIEHCLQMGRRALVLVPEISLTPQMILRLKSQFGKRVAVQHSALNHTERLLQWQMIQDGGADIVVGTRSAIFSPLENIGLVIIDEEQEHTYRSESAPRYSAHEVARQRAAENGALLLLASATPSTESYYAAQHGRTQLVRLTKRYGGNPLPKVQIVDMRAELASGNPREISLAMEDAIRHNLEAGKQTILLLNRRGYQTVAQCEDCREVLKCQKCSVPMVYHKSAHKLLCHYCGSQLDQPPARCPACGGKLQYRGFGTQKAEEELAKLFPEARILRMDQDTTAAKDAHEKLLAKFARHEYDIMVGTQMVAKGLDFEDVTLVGVLGIDSLLFAQGFRAYETVFSLVTQVVGRSGRAKDPGFAIIQTTDPDNPVLNLAAAQDYDAFFEQEIAYRKLGLYPPFCGLCVVGFAGPKESEVARASARFAALLGRQAAKQPDLPLRVLGPTPGSIEKINDSYRYKLTVKCRNDRRFRNLIRETLTLYEQEKLPGKATVVVDLHSDGDI
Sequence
>complement(69629..70201)
FaecalibacteriumprausnitziiMENEKYLFVVSGAAGTGKDSVVSALRKAHPEIEKTVSATTRSPRPGEQEGVDYYYRTKEQFQQLIDQDEVVEHNFFNGNYYGTLKDEVNKRLNAGKLVVMVIDVHGAANIRRMYPGATTIFLLPPSTQELERRLRGRGTESEESIRERLEIARNELAQQDKFTLKLVNDEVDACAARLYDVICQRADLTR
Faecalibacterium prausnitzii strain AM39-7BH AM39-7BH
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 180307 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: DW882_06840 (Region 1)
Locus: DW882_06840ORF Start: 60837
ORF Stop: 62693
Strand: Backward
Protein Sequence: MDNLIGKTLDGLYTVRELIGTGGMANVYKAVVGPGGPVPEGTVVAVKVLRQELMHDPDLVRRFKNESKAISLLNHPNIVKVYDVSVSDHLQYIVMEYVDGMTLREYLNERGGKLTSRETVHFISQILKALDHAHRNGVVHRDIKPQNIMLLDNGQLRMMDFGIARISRAENQLSGGKAMGSVHYISPEQAKGDETDFTSDLYSVGVMMYEMLSGHLPFDADDVVEVAIKQISDQPRSLRELAPWVPVGLVEITERAMAKRPENRYKSAAEMLEALNAYVENPAIVFNYTYLPDEIPEKVVEPPMPRKESRPERGSAPAKGRKKKKRTVFLPVLFGITVAFALACAALCWMILNDSSSLMGEKADVVLADYSGMTQDEVNASQQVASGQIVINWEQAYSNDYAAGYVYRQSPVAGRTVREGQSVTLTVSLGIQYVTVPDVSNYVQADGEQQLKDLGVSVLITQAVEPSVAAGSIIRTEPAAGSQVAAGSTVVVYVSRPQVNTTAKVPALTGLKSVDDARSVLVQNKLGLGSTTEQYSDQPAGTIIGQSPAAGSTVKVNSRVSITVSAGPEPVPETPAEQPGSSSGDWWSGLIGGSSSSSGDSSSSEGTGLGDWWSALLS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DW882_06840, serine/threonine kinase, phage(gi170783632), PHAGE_Entero_Min27_NC_010237
Homolog/Ortholog E-Value: 1.35e-22
Locus 2: DW882_06845 (Region 1)
Locus: DW882_06845ORF Start: 62686
ORF Stop: 63435
Strand: Backward
Protein Sequence: MKLAGKTDVGRVRQENQDDYRAGELPGGAVWALVCDGMGGAKGGREASQGACNVIEQVFQEQYAQCGAGQEGAFLKKALISANRYVFNKAAHEESLAGMGTTAVCALVRGGEATLCHAGDSRAYLCRGGKLTQLTHDHSYVQELVDCGTITEEEAEHHPQKNIITRALGVDYRLEPEVTSVQLQAKDLLLLCSDGLTNMVPVEQMEQLLAQGPFYDLPDRLVDAANENGGSDNITALLLAVEPTEVHHG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DW882_06845, putative serine/threonine phosphatase, phage(gi401817585), PHAGE_Cronob_phiES15_NC_018454
Homolog/Ortholog E-Value: 6.63e-11
Locus 3: DW882_06850 (Region 1)
Locus: DW882_06850ORF Start: 63455
ORF Stop: 64495
Strand: Backward
Protein Sequence: MEQKRCISSLTLAELTAALKAMGQPGFRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKLEEQFYIAAPKIERRQEAKDGTVKYLLRMADGNCIETVVMRYHYGNTVCVSTQVGCRMGCRFCASTQAGRVRNLEAGEICSEIYTAQKDIGERISHIVLMGIGEPLDNFDEVMRFLENISSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSVSLHAPNNEIRSGMMPVNDAYPVEVLMPAVRRYQETTGRRVSFEYSMVRGVNDSDACARQLADLIRGMGAHVNLIPINPVDGSPYSATDAANVQRFQKKLESLGVNATVRRRLGSEISAACGQLRRDEMNGKA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DW882_06850, Fe-S-cluster redox domain-containing protein, phage(gi189490583), PHAGE_Pseudo_201phi2_1_NC_010821
Homolog/Ortholog E-Value: 1.09e-13
Locus 4: DW882_06855 (Region 1)
Locus: DW882_06855ORF Start: 64535
ORF Stop: 65857
Strand: Backward
Protein Sequence: MAANPRAAAVAALVRQEQDGFSNLVLDAELRRQKLEGRDKAFAGAIFYTVLEHQGTLDFILEQFLPKGLARLDPQVREILRAALAQARYMQVPVSAAVNEAVKLTRTFKKASASGLVNAVLRKACNYDLETARFRNETQRLMVLGSAGQDVAEFLRTHYPEEALGILTHTADGGCTSLRANCLKMDAAALCEKLLESGVKSAQPGLVPGSVLAKFEGSPAEHPLFKEGCFHVEGQASQLAALCVEAKPGDTVIDLCAAPGGKTLLLAEEMQGQGALYSCDVAEHRVGLIRSAVERMGFAHVTALCNDATRPNPKLPAADRILVDAPCSGLGILAKKPDIRYKTLEKARHDELLATQSSILDTAAALLKAGGRLVYSTCTIDPAENEEQVAAFLVRHPEFRVVRPAVAFPDGMTVGEHGVLSVPTRTGMDGFFLCAMQKTQ
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: DW882_06855, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
Homolog/Ortholog E-Value: N/A
Locus 5: DW882_06860 (Region 1)
Locus: DW882_06860ORF Start: 65857
ORF Stop: 66777
Strand: Backward
Protein Sequence: MRILFMGTPDIAAECLKALYAAGHEICGVYTRRDKPVGRKQVLTAPPVKEVALEHGTPVFQPRTLRDGSEDANIRALAPDLIVVVAYGCILPKSVLEAPKYGCINLHVSLLPKYRGSAPVQWAVLNGDTETGVSIMQMDEGLDTGDVLVCEKIAIGPEETSGELFDRVTAVGARVLCEAVPALEAGTLRPQPQQHENATLAPMLDKELAEFRLTDTAAHIHNWVRGMNPWPMAWFVTAGGKKVKVTECRVAASNGEAPGTVLSTKPLTVACADGAVQLLHVVPEGKKPMDGTSFAAGLRLKAGDTL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DW882_06860, PRGA-formyltransferase, phage(gi326784531), PHAGE_Prochl_P_SSM7_NC_015290
Homolog/Ortholog E-Value: 5.58e-15
Locus 6: DW882_06865 (Region 1)
Locus: DW882_06865ORF Start: 66777
ORF Stop: 67313
Strand: Backward
Protein Sequence: MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRLFVVWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPAAVKVRAQDRNGNWFELEAENLLARCIQHENDHLDGITIMESSEYFYEDTEEGKKAAREAKGNN
Homolog/Ortholog Species: Head protein
Homolog/Ortholog Protein: DW882_06865, prohead core protein, phage(gi100216), PHAGE_Synech_S_CAM7_NC_031927
Homolog/Ortholog E-Value: 3.82e-18
Locus 7: DW882_06870 (Region 1)
Locus: DW882_06870ORF Start: 67344
ORF Stop: 69605
Strand: Backward
Protein Sequence: MPKTVGVAVSNATFHFDKLYTYAVMPDQQDTVRLGSMVLVPFGRGSRARMGVVLACDAEPESAKLKFLFDVAPASACLTPELLRLVHFLKERTFCTYYEAVKAVIPYGAQYKPTVAEDGVTPVLQKQLIRHTENAYRLVGTLPPKPRPTAKQLAAVALLAGGERTLSALEEKGISRAVLDNLCAKGVLECSKVNKSIDLYSSIPLKNEPILLTEEQQAAYDALLPGLEDAAPHSALLYGVTGSGKTLVFLKLIEHCLQMGRRALVLVPEISLTPQMILRLKSQFGKRVAVQHSALNHTERLLQWQMIQDGGADIVVGTRSAIFSPLENIGLVIIDEEQEHTYRSESAPRYSAHEVARQRAAENGALLLLASATPSTESYYAAQHGRTQLVRLTKRYGGNPLPKVQIVDMRAELASGNPREISLAMEDAIRHNLEAGKQTILLLNRRGYQTVAQCEDCREVLKCQKCSVPMVYHKSAHKLLCHYCGSQLDQPPARCPACGGKLQYRGFGTQKAEEELAKLFPEARILRMDQDTTAAKDAHEKLLAKFARHEYDIMVGTQMVAKGLDFEDVTLVGVLGIDSLLFAQGFRAYETVFSLVTQVVGRSGRAKDPGFAIIQTTDPDNPVLNLAAAQDYDAFFEQEIAYRKLGLYPPFCGLCVVGFAGPKESEVARASARFAALLGRQAAKQPDLPLRVLGPTPGSIEKINDSYRYKLTVKCRNDRRFRNLIRETLTLYEQEKLPGKATVVVDLHSDGDI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DW882_06870, cytosine-specific methyltransferase, phage(gi100124), PHAGE_Synech_S_WAM1_NC_031944
Homolog/Ortholog E-Value: 2.70e-05
Locus 8: DW882_06875 (Region 1)
Locus: DW882_06875ORF Start: 69629
ORF Stop: 70201
Strand: Backward
Protein Sequence: MENEKYLFVVSGAAGTGKDSVVSALRKAHPEIEKTVSATTRSPRPGEQEGVDYYYRTKEQFQQLIDQDEVVEHNFFNGNYYGTLKDEVNKRLNAGKLVVMVIDVHGAANIRRMYPGATTIFLLPPSTQELERRLRGRGTESEESIRERLEIARNELAQQDKFTLKLVNDEVDACAARLYDVICQRADLTR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DW882_06875, guanylate kinase, phage(gi423262548), PHAGE_Liberi_SC2_NC_019550
Homolog/Ortholog E-Value: 8.22e-21
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download