Submission Results
Sequence Name: Not Available
GenBank Accession Number: RAYF01000043.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: RAYF01000043.1.PHASTER.zip
gi|00000000|ref|RAYF01000043.1| Bacterium D16-36 strain D16-36 Scaffold31_1, whole genome shotgun 57671, gc%: 47.94%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 9.9Kb | incomplete | 20 | 12 | 33149-43074 info_outline | PHAGE_Gordon_Schwabeltier_NC_031255(1) | 42.98% | Show info_outline |
Region DNA
>1 33149-43074 AAGCGAAAGACAATCCGCAAAGAATGTGTTTTACTATATATTTATGATGAAAAACCCTCC GATGTTTCGGGGGATTTTTTTCTTCCGTTTATTTTTCACAGATATTCCATATACGTTCCA TATAGGAATGTTATTTTAATATTGTGTTCAAAAAATAAAAAACGGAGGTATCAAAATGAA TTTTTTAAAACGGGCAATGTTATATGTTACTCGAAAAAAAGGGAAAAGCATAGTGCTTTT TTGTATATTGCTTATTATGGCAACCTTTGTCTTGTCGGGATTGTCTATCGGGAAAGCTAC AAAACAAGCACAGCAAAATCTGCGTCAAAGCCTTGGCGGTTCTTTTCATGTCTGGACGGA CTACACAGATAATAACCCCTATCTGCATAAAGAGTCGGACGAGGATGAAAGTGGAGGGAC TGGATATATCATGTATTCCACAGAGCAGTTATCCTCTGATATGGTGAAAAATATCCGTGA TATAGCAGGAGTGAAATATTGCGATGCATTTGATGAAACATTATTGGATTTTGAACAGTT GTCTTTTTTCAAGGGGACAATTCCTTTGGAGGAAGAATTAGGGAATAGCACGACTACGGT AAGTCTATGGCGTTCCGAAGAACACAATTTGTTTACAAATGGCGTTGTCAAACTAACGGA AGGCAGGCATATTACAGAAAAAGATACGGGGAAAGCAATTATTTGTAAAGATTTGGCTGA TAAAAATGGCTTAGGGATAGGCGATATGCTGAAAACGAGGTCTATGGATGGGCGCAGCAT GACGCTGGAAATCGTTGGATTGTTTACAGCAATGGAAACAGAAAAAATCGGCAAGAATAT AGAGGGCTATAATAAAATACAGAATCGGGTGTTTATAGATATAGCGTCGGCAATTCTTAT CGAGAACACCCCTGCTGTCCAGGGATTTTCAGAAGTTTCAATTACCATAAACGACCCAGA AGAAATGGATGAAATTATCGAAAAAGTGAAAAAGACGCCTGGATTTAAAGAGGATGGATT TACGATTGATACGGAAAATGAAACTTATGAAAATACGGCTTCCTCTCTGGAAAGTATGGA TAAACTGGTGATAGGTCTGCTGATTGCGGCTATCCTTGTCAGCGTTGTAATCTTATCGCT TATTCTTACTCTATGGGGAAAATCACGTGTCCGTGAAACAGGTGTGTTCCTCTCGCTTGG CATAAAAAAGACAGACATTATAGGGCAATATCTGACAGAAGTATTGCTGATTGCAATCGT TGCTTTTGGGATTTCCTTCTTTACAAGTAATATGGTTTCAAACCGTATCGCCGATGTGCT TTTACAGCAGGATATACAGAATAAAATAGAAGAACCGAACGACGTGCAGCAAGATGACAT TGTGATAGAATCGTTTGAAAGTACAGCATTAGGAGGTGTAGACAATATAGAATTGAGCGG TGCAGAAAATACAGATTATTTGGAAACGGATATTGAAGTTTCTGTAAGCATAGAAAATTT ATTACAGCTATATCTTGTTGGATTTGTAATTATCATTGTATCTGTTATGATATCGTCTAT TGCGGTCATGCGTTTGAAGCCGCGTGAAATTTTATCCCGCATGAGTTAGGAGGAGAAAAA GATGACAACGCTAATATGTGAAAACGTAACATATCAATATGAAAAAGGCTCAAAGGTCTT AGAACATATCACAACTCAATTTGAAACAGGAAAAATGTATGCGATACTTGGTGCATCTGG TTCTGGGAAAACGACCCTGTTATCATTGATAGGCGGTCTTGATATTCCACAGGAAGGAAA AATTATGTTTAATGGCAGGGATATATCGGAGATGGGACTTGAATACCATAGGCGCAATCA TGTTTCTGTCATATTCCAGAATTACAATCTTATTGATTATATGACTCCGATTGAAAACGT AAAATTGACCGCAAAACAGGACGCCCTGCCAATATTAAAGCAGCTTGGATTGACGGAGGA TGAAGCAAAACGAAATGTAATGAAACTGTCGGGAGGACAGCAGCAGCGTGTGGCAATTGC CCGTACACTGGTATCGAATGCCCCTGTTATTTTAGCGGATGAACCAACGGGAAATTTAGA CAAAGATACTGCCGCAGAAATTACGGGGATTTTGAAAAATTGCGCCCATCAGATGAATAA ATGCGTAATTATTGTTACCCACTCCAACGACCTTGTAAAACAAGCAGATACCGTTTTTAA GTTAAAAAAAGGCAGGTTGCTTCAAATATGAAATACGAGTGGATATATTGCCCGATTTGC AAAAAAAAGACGCATAACAAATTTAGGGAAGATACTGTTTTGAAAAACTATCCGCTTTAT TGTCCAAAATGTAAACGGGAAACGATAATTAACGCAAAAAATATGCAAGTATTTATCATC ACAGAGCCAGACACATAGATGCAGAGCCGATGAATGTGTGGAATGAATGAAACCACAGTT TATCGGCTCTGCATTTTACTTAATTAAATGCAGATACGTCCACCAAATAAAAAAAACGGC GATTTGGTGGGCGGTATTGCTATGCCCGAAAGACTTAACAAGCACTCTCCAAACCTGTTT TAAGTTTGGAGGGATTTTTATTGCCTGCAAATAGCAATTTCCAGTTATATATATCATATC GGAGATGGGTGGACAGCCTGTTAAAAAAATCCTTGTCAGTGCAAGGGGGCTTTTTATCCA AGAAGTAGAAGTCAAATCTCTACATATAAGAACTAATATATCTATAAACCGTAAAGGCAC GACAGCCCTTACGGTTTTTCTTTTGTCGTTTTTTGTCGGAATACGCCGCAGGGCTGTTTC TGGCGTGGGATGCCGTTCTCCGCCTTTCAATCTGGATTTTCAAAAAAATTCAGATTGGAG GTAACGGATTATGGCGTACAACAAAGCCAGAGAAGAAAGAAAATGGCGAATATGGAAAGA AGCCGAGGAAAAGCAGCTTAGGAGCTTGGGTGTCAGCGAGGGCGATATTGAAAAGCTCCG TGTCCATGATTGGGCGATATTCAATTCCGACAGACGGTACTATGAGAAATTGCAGGATGC GGGTACATATCTTGAGGAAGTGGCAGAGGACACAGCACAGCCCGAAGTAAAAACGGTTGA GGAATTTTTGGACAGCATTGAAAATGCAGTGCTGTATCAAGAGCTGCATCAGTTGGACAA GCTCACTCTCCAAGCGTTGCTGATGAGGATGCAGGGCTTTTCAGTCACTGAAATTTCAGT GGAATTGAGTTTAAACAAGGAAGTCATTTACAAGCGTTTGAACAGGTTTAAGAAAAAAAT TAAAAAACTTTTGGGATAGTGTCCAAAATCGCACTCTCCCATCGGCTACTGGGTGAGAGG GCAAAATCTCTTGCCCAGTTTTCTTTTATATCGGAAACGGGATGGCTCTTTGACAACCGA ATATCCATTCACCAAATACATTCTCTTTGTGGCTGTAATAAGCGTAAGCGTGTGCAGCGG TACGCCATGACCCGCCGAAAGACGGCAAGCGGAAAATATCGACTGAAAATATCGGGCAGC TCCCGATTTCGCCAAGACCCACAAAGAGGACAATGATACTCCCGTCCAGCCACAGTCCGA GCGGTAACCAATCCGCCGCAGGCAATGGGGGCGGCTCTGTCAGACCGACAGTTGGGGTGC AACTCCCGTGGCGTCAGTTCGCTGCTGACCGTTTGGTGATTTCCCTTGCGTAATCACGCA TCAGCATTTTCGGGATGTCGGGGACAAATAGAAAATGCCTTTTATCATAAAGCCAGATGC AGGGCGGTCTATTGGAACAGGGCTTGTTTGATGCTCTCCCGACCTTAAATACTCCCTTGC ATTTGGCTGTTACATAGGTAGGGTATTCCTGCCTAAATCCAGATGGAGGTTATAAAAAAT ATGGAAAGAACAATCAGGCGTGGCGACATCTACTACGCAGAGCTTAATCCCGTTGTCGGT TCGGAGCAGGGCGGCACACGACCCGTACTTATCATTTCCAATAATATAGGCAACAGGCAC AGCCCGACAGTCATCATTGCCGCTATCACGGGCAGGACACAGACAAAGGCAAAATTGCCG ACACACACCGAAGTAAAGAACTTTGAGGGACTTGACAGAGAATCTATTGTTTTGCTTGAA CAAATTCGTACAATAGATAAAAAAAGATTAAAACAGTATATGGGCATGATGCCCGCTGAA GCGATGGCAAGAGTTGACAAGGCTCTTGCCATCAGCGTTTCCATTAAAGGAGGACATCGG AATGGATAAAATTGAGATTGATAAAGAGTATGTTGCTGCCATATTAATTGAGCTTCTCTT TGAAAAAGGGCTTGTAAACAAAGAAACATATATGAATGTCTACAAGCACTACAATTTGCA CATTTCACAAGCGGCTTGATTTTTAGTACGATTATAAAAAACAAAGCAAGGAGGAATTCA TTATGCAAAATATAGCAGCTAGGCATAATCCTTATATTTTTTTAGATAAGAACAGAGAGC GGACGGTTGTATATTATGGGCGAGTTTCAACAGAGCATGAAGCTCAACTTGCAGCTCTTG AAAATCAATTACAGTGGTACGATGACCAGACGGAACGGCACAGTAACTGGAATGTCCTTC AAAAATATATCGACGAGGGAATAACAGGGACACAAGCGAAAAAACGTCCCGCATTTTTAA GGATGCTTGAAGATGCAAGGGCAGGAAAGTTTGACCTAATTGTAACTCGTGAAGTCTGCC GTTTTGCAAGAAACACGGTTGATACTCTGGTAACAACAAGGGAGTTGAAAAATCTTGGAA TTGAAGTCTATTTTGTGGAAGATAACATTTGGACAATGGATGGGGACGGAGAACTTAGAC TTACGATAATGGCAACATTAGCACAAGAGGAAAGCCGTAAAGTTTCTGAACGTGTTCGGG CGGGGCAGAAAATCAGCCGTGAAAATGGTGTTTTATATGGAAATGGAAATATCATTGGTT ATGACCGTGTAGGAAGCACTTATGTAATAAATGAGGAACAGGCAGAAACAGTAAGAATGA TTTTTGATTTGTATTTACAAGGCGCTGGGCAGACCAAAATTGCAAAAGAACTCTGTCGTC TTGGGAGAAAGGATGGGCATGGGCAGGTGAGCTGGTCTGCATCAAAAATCGGACGCATCC TGCATAACGCCACATATAAAGGATATAATTGTTATCTGAAATCGTTCAGCAATAATTATC TGGAACAGAAGCGGATAAAGAATCTTGATGAAGAAACATATATGTATGTCAAGGGGGATT TTGAGCCGATTGTTTCAGAGGAAGTTTGGAATAAGTGCAGCGAAATACGCAAGGCACGGA CAACAAAAATGATAGTAAACAAAGGTGAGAGAACATATGGAAAGAAATCTACACAAGATG TATGGCTTAGAAAGTTACGTTGCAGTTGTGGTTCAACATTCCGAAAAAACAAGTGGAGAA CTAATAAGAGGGGAGATGAAGTTTTCGGGTATCAGTGCTATAATCAAGTCAATAATGGCA GCAAGGCTTTCCGAGAGAAGAATGGTCTTGATACAGAGGGCTATTGTGACATCCGTATGG TCGGTGATTGGAAATTGGAAATTATGGCTAAGAAGATTTTCGAGGGCATCTGGTCAGAGC AAGAACGTAAGAATGCAATCTTAGAGGTTTATAGGCTCTTGAATGAACATTATCAATCAG ATACCAAGAACAATCAAGCCGCAGCTTCGGCGTTAGAGGGAAAAATAGCAAGGCTAAAAA ATAAGATTGATAATCTTATCAGCATGAGGGCTGATGGGGAAATTACAAAAGAAGAATTTA AGTCGCTGAAAGATACGACCGAAGCGGAGCTTAATAAATATATGGAAGAAAAGTCACGGC TGAGTGAGCTATCTGATAGTGAGAGTGGCATGGAATTTGATATTGAGAAAATAAGAGCCG TACTTGAAGAAGCGTTAGACTTTTCCAAACCCAAACTTGATGACAGTGTTATTGAAAAAT TTGTTTCGCAAATTATTCCCGTAGATAATTGCAGGTATCGTTGGGATTTGAATTTCCTGC CGAATGAAACGCAATCACTTGTTTGCAAAGTTGAGGGCAGAAAAAACCATGCCAATGCAA CTATTGAGGAGGGGAACGAAGATGAGGACGAAAGTCCTCGTACATATGTCCTAAGCATGG ATTACAGCAACATAAGTGTGACAGCAAAAAACGCCTATCAAAGTTACGTTCTGCACAGGC GGCGATAAACAATGTAGGAAAGTAGATTACAAATATATGTACTTTACGGAGTATCTGATA ACCAGAGCTGATGTGAATGATTTCATGGCACATCGTCCGGAGTACACAAAGGCGAACCGC TTTGAGGATTTCGTTTGTAAAATCTATCTTTAACGATTAGGGGAAAATTCATTTGAGAGT TTTCCCCTTTTTTCGTGGTTTTTTCAAAGGATTCTATCCCAAACAAAGGATAGAGTCCTT TTTATATACACAAACAAAATAATCAAAGGAGGTTCACACATGAACAACACAGCGTTAAGA GCAGGGGCGCAGAGCGCCAACAACACACACATGGTTTTTGCAAACGAGGAACATGAGAAG TTTTATTATGAGAAACTGGAACAGGCGAGGTATCAGGACTGCTACCACAGGGCGTTGATT TACATTCTCGGCATATCTGAGGACACAAGGAATCATTTCAGCCAGATTTACGATATCAAG TCCGGGTACATCAAAACAGAGTGTCTGCATCAGGGCTGGCAGACAAGCGGCAGTGTCCGG GTGGTAAGGCTTGCCTTTAACCTTTACACGGACGGAACGCCAAGCATTGATGATTATAAG CGCAAGGACGAGCAGATAGGCGAGTGCAGGGGGTATTCCGTAAGCGATATTTTCTGCTGT GGCTACGCAATGTACTTCTGGCAGGGCATCAAGCTCCGTTACCCGGAATACTGCCAGAAA CAGCGGTCTGTTGAGGAAATCCTTGCAGAAATGGAGAAGAAACGTGCTGAAAATTCGACT GATGGGAACGAAGAATGATATTAAGTGGTTCGAGAAGATTCTGAAAAGACAGCCCAAAGT GGCTGTGACGGAAGTTTCGGAGCTGTACCGGAACAAGGGTACAAACAGGTATTACCGGGC TTATGTGGAAGTGCAGAAAGCCAACATCAAAGAAAAATCTGACTAATACGGAGGAATAAA ACCATGTGTAAAGTTATAGCAATCGCAAACCAGAAAGGTGGAGTGGGCAAGACCACCACA ACGAGCAATTTAGGAATCGGGCTGGCAAAACAGGGAAAAAGAGTTTTACTTATTGATGCG GACGCACAGGGGAGCCTGACCGCAAGCCTTGGCTTTACGGAGCCTGACAAGCTGGAAGTC ACCCTTGCAAGCGTAATGGAAAAGGTCATCAACGATGAAGAAATGGAACCGGGCTACGGT ATCTTAAAGCACGAAGAAGGGATTGACCTGATGCCGGGGAACATTGAGCTGTCCGGCCTG GAGGTTTCCCTTGTAAACGTGATGAGCAGGGAGATCATGATGCGCTCTTATATGGATATG GTAAAGGAGCAATACGATTATATCCTGATTGATTGTATGCCCTCACTTGGCATGATCACC ATAAATGCCTTTGCCTGTGCGGACAGCATACTGATACCCGTGCAGGCCGCATATCTGCCC GTGAAAGGTCTGGAACAGCTTATCAAGACCATAGGCAAGGTAAAGCGGCAGATCAATCCC AGGCTGGAGATTGAGGGCATCCTGCTGACAATGGTAGACAACCGTACCAATTATGCGAGG GATATTACAGCGCTGCTTATTGAAACGTATGGGAGCAGGGTACGGATATTTGAGAACAGC ATACCGATGTCGGTAAGGGCGGCGGAAACTTCTGCGGAAGGCGTCAGCATCTACCAGCAT GACCCGAAAGGCAGGGTTGCGGGTGCATACCAGTCTTTGACGGAGGAGGTGCTTGGCAGT GGGCAGTAAGGCAGGGAGTGCGTCAAAAGTCAAACTGAACACTTTTGATGATTTATTTGG CGGCGCAGAAAATACGGCGGGGGAGCAGATCATCCATGCGAAGCTGGCCGATTTACATAC ATTCAGAGGACACCCTTTCCGTGTCCTTGATGATGAAAAGATGGAGGAAACCACGGAGAG CATCGGTAAATATGGTGTTCTTGTACCTGGAATTGTAAGGCCACGGGCAGGGGGTGGCTA TGAGATGATAGCCGGACACCGGAGGAAACGGGGTTCTGAAAGGGCAGGGCTTGATACAAT GCCAGTCATTGTCAGGGATTATACGGACGATGAAGCCACGATCATCATGGTGGATTCCAA TATCCAGCGTGAGGACATTCTGCCGAGCGAGAAAGCCAGGGCTTATGCCATGAAGTATGA GGCAATGAAACATCAGGGAAGCAGGGGCGGCAGTACCCTTGACGAAGTGGGGGAAGCTGC CGGGGAGAGCGGAAAGACGGTGCAGAGGTATGTATGGCTTGCAAGGCTCTCTGACGATCT GCTTGACATGGTGGATAAGAAAAAGATAGGGATAGCGCAGGGCGTGGATATTTCTTTCCT GACAGAAGAAGCCCAGCAATGGGTGTCTGTTATCTTAGGGGAAACAGGGGCGGCAATGAA CGCTTCCCAATCGGCAAAGCTGAAGGAGTATGGGAAAAGCGGAGAGCTTACGCCTGCGAT GGTAAGGCTGATACTGGCGGAGGAAAAGCCGAAAGAAAGAAAAGTAACGATTAAGGGCGA TAAGATCAACAGGTATTTTCCAGAGGAATACTCCAATGATGACATAGAGGGCATCATTAT CCAGCTTTTGGAGGAATGGCAGAGTAAGCAGTAAAGGAGGCGGCAAAATGGGCGAGCCAT TGAAGTTTGATTATTACTATGGCATTGAAGCAGAGCAGTTTTCTTTTTACCGTGTTCCCC GCCTGCTGATTAAAGACGAGCGTTTCAAGGGGCTTAGCAGCGATGCTAAGCTCCTGTATG GGCTGATGCTTGACAGGATGTCAATGTCCATGAAAAATGGGTGGCTGGACGATGAAAACA GGGCATATATCATATACACAATAGAGAATATCAGGGAAGATTTAGGATGCAGCAAAGAGA AGGCTGTAAAAGTCCTTGCGGAACTGGATGCAAGCAAAGGGATAGGGCTTATTGAAAAGA TACGCCGGGGGCTTGGTAAACCGGATATTATTTATGTGAAGAATTTTATTATACAAGATG AGGGCAGGAAAGAGCCTTCTAATGCTGATGTTTCCGCAGAAGTCGGAAAAACCGACTTCA AGAGGTCGGAAAAGCCGACTTCAAGAAGTCAGGAAAACCGACTTCAAGAGGTCGGAAAAA CCGATTTCAGCAGGTCGGAAAAACTGACTTCAAGAGGTCGGGAAAACCAACTTCAAGAAG TCGGGGAATCAGACCCTAATTATACTGACTATAATCAGATTGAAAAGAACTATACTGATA TGAGTTATACCAATCCTATCAATCAATCCACGGGAAAAGCTGATGCGATTGATGCGATAG ATGAAACAAGCGCATATATGGCTCTGATCCGTGACAATCTGGATTATGAACACCACATGA AATACGGGCAGCATGGTGATAGGGAGATGTATGAGGAAATCTATGAAACCGTCTGCGATG TGGTCTGCGTAAAGCGAAAGACAATCCGCATCAATGGGGAAGAATACCCTTATGAGCTTG TAAAATCCCGCTTTTTGAAGCTGAACAGCAGCCATGTGGAGTATGTTATGGGCTGTATGA GGGAAACTGTCACAAAGATTACCAACATCAGGGCATATCTGATTACGGCGCTTTACAATG CCCCTTCAACCATGAGCCATTATTACCAGCAGGAGGTACAGCATGATATGTATGGCGGAG GGTGGGCAGAAAAAGGAATTACTTAA
Region Details
| Region | 1 |
| Region Length | 9.9Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | recombinase |
| Region Position | 33149-43074 |
| # tRNA | 0 |
| # Total Proteins | 12 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 4 |
| Phage + Hypothetical Protein % | 83.3% |
| # Bacterial Proteins | 2 |
| Attachment Site | yes |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Gordon_Schwabeltier_NC_031255(1) PHAGE_Bacill_WBeta_NC_007734(1) PHAGE_Bacill_Fah_NC_007814(1) PHAGE_Bacill_Gamma_NC_007458(1) PHAGE_Clostr_phiCTC2B_NC_030951(1) PHAGE_Gordon_Bowser_NC_030930(1) PHAGE_Strept_9874_NC_031023(1) PHAGE_Vibrio_VP58.5_NC_027981(1) PHAGE_Gordon_Nyceirae_NC_031004(1) PHAGE_Plankt_PaV_LD_NC_016564(1) PHAGE_Natria_PhiCh1_NC_004084(1) PHAGE_Strept_9872_NC_031094(1) PHAGE_Rhizob_RHEph10_NC_034248(1) PHAGE_Entero_EF62phi_NC_017732(1) PHAGE_Clostr_phiCT19406B_NC_030947(1) PHAGE_Brevib_Sundance_NC_028749(1) PHAGE_Bacill_SPbeta_NC_001884(1) PHAGE_Mycoba_Adler_NC_023591(1) PHAGE_Bacill_G_NC_023719(1) PHAGE_Strept_7201_NC_002185(1) PHAGE_Salmon_SSU5_NC_018843(1) PHAGE_Clostr_c_st_NC_007581(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 8.33% |
| GC % | 42.98% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|RAYF01000043.1| Bacterium D16-36 strain D16-36 Scaffold31_1, whole genome shotgun 57671, gc%: 47.94%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 14 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 33149..33167 | attL | 0.0 | Showinfo_outline |
| 2 | 34770..35399 | PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; D7V72_13285; phage(gi371496158) | 4.75e-32 | Showinfo_outline |
| 3 | 35396..35566 | conjugal transfer protein; D7V72_13290 | 0.0 | Showinfo_outline |
| 4 | 35793..36032 | hypothetical protein; D7V72_13295 | 0.0 | Showinfo_outline |
| 5 | 36039..36467 | sigma-70 family RNA polymerase sigma factor; D7V72_13300 | 0.0 | Showinfo_outline |
| 6 | 36666..36858 | hypothetical protein; D7V72_13305 | 0.0 | Showinfo_outline |
| 7 | 37049..37417 | PHAGE_Clostr_c_st_NC_007581: PemK family transcriptional regulator; D7V72_13310; phage(gi80159713) | 1.77e-12 | Showinfo_outline |
| 8 | 37591..39396 | PHAGE_Bacill_WBeta_NC_007734: putative site-specific recombinase; D7V72_13315; phage(gi85701406) | 6.13e-31 | Showinfo_outline |
| 9 | 39668..40186 | hypothetical protein; D7V72_13320 | 0.0 | Showinfo_outline |
| 10 | 40152..40334 | hypothetical protein; D7V72_13325 | 0.0 | Showinfo_outline |
| 11 | 40352..41137 | PHAGE_Natria_PhiCh1_NC_004084: putative plasmid partitioning protein Soj; D7V72_13330; phage(gi22091150) | 6.19e-30 | Showinfo_outline |
| 12 | 41127..42002 | PHAGE_Gordon_Schwabeltier_NC_031255: recombination endonuclease subunit; D7V72_13335; phage(gi100054) | 6.68e-09 | Showinfo_outline |
| 13 | 42016..43074 | PHAGE_Strept_7201_NC_002185: ORF4; D7V72_13340; phage(gi9634630) | 3.77e-18 | Showinfo_outline |
| 14 | 42820..42838 | attR | 0.0 | Showinfo_outline |
Sequence
>33149..33167
AAGCGAAAGACAATCCGCA
Sequence
>34770..35399
bacteriumD1636MTTLICENVTYQYEKGSKVLEHITTQFETGKMYAILGASGSGKTTLLSLIGGLDIPQEGKIMFNGRDISEMGLEYHRRNHVSVIFQNYNLIDYMTPIENVKLTAKQDALPILKQLGLTEDEAKRNVMKLSGGQQQRVAIARTLVSNAPVILADEPTGNLDKDTAAEITGILKNCAHQMNKCVIIVTHSNDLVKQADTVFKLKKGRLLQI
Sequence
>35396..35566
bacteriumD1636MKYEWIYCPICKKKTHNKFREDTVLKNYPLYCPKCKRETIINAKNMQVFIITEPDT
Sequence
>35793..36032
bacteriumD1636MGGQPVKKILVSARGLFIQEVEVKSLHIRTNISINRKGTTALTVFLLSFFVGIRRRAVSGVGCRSPPFNLDFQKNSDWR
Sequence
>36039..36467
bacteriumD1636MAYNKAREERKWRIWKEAEEKQLRSLGVSEGDIEKLRVHDWAIFNSDRRYYEKLQDAGTYLEEVAEDTAQPEVKTVEEFLDSIENAVLYQELHQLDKLTLQALLMRMQGFSVTEISVELSLNKEVIYKRLNRFKKKIKKLLG
Sequence
>36666..36858
bacteriumD1636IDKYRAAPDFAKTHKEDNDTPVQPQSERPIRRRQWGRLCQTDSWGATPVASVRCPFGDFPCG
Sequence
>37049..37417
bacteriumD1636MERTIRRGDIYYAELNPVVGSEQGGTRPVLIISNNIGNRHSPTVIIAAITGRTQTKAKLPTHTEVKNFEGLDRESIVLLEQIRTIDKKRLKQYMGMMPAEAMARVDKALAISVSIKGGHRNG
Sequence
>37591..39396
bacteriumD1636MQNIAARHNPYIFLDKNRERTVVYYGRVSTEHEAQLAALENQLQWYDDQTERHSNWNVLQKYIDEGITGTQAKKRPAFLRMLEDARAGKFDLIVTREVCRFARNTVDTLVTTRELKNLGIEVYFVEDNIWTMDGDGELRLTIMATLAQEESRKVSERVRAGQKISRENGVLYGNGNIIGYDRVGSTYVINEEQAETVRMIFDLYLQGAGQTKIAKELCRLGRKDGHGQVSWSASKIGRILHNATYKGYNCYLKSFSNNYLEQKRIKNLDEETYMYVKGDFEPIVSEEVWNKCSEIRKARTTKMIVNKGERTYGKKSTQDVWLRKLRCSCGSTFRKNKWRTNKRGDEVFGYQCYNQVNNGSKAFREKNGLDTEGYCDIRMVGDWKLEIMAKKIFEGIWSEQERKNAILEVYRLLNEHYQSDTKNNQAAASALEGKIARLKNKIDNLISMRADGEITKEEFKSLKDTTEAELNKYMEEKSRLSELSDSESGMEFDIEKIRAVLEEALDFSKPKLDDSVIEKFVSQIIPVDNCRYRWDLNFLPNETQSLVCKVEGRKNHANATIEEGNEDEDESPRTYVLSMDYSNISVTAKNAYQSYVLHRRR
Sequence
>39668..40186
bacteriumD1636MNNTALRAGAQSANNTHMVFANEEHEKFYYEKLEQARYQDCYHRALIYILGISEDTRNHFSQIYDIKSGYIKTECLHQGWQTSGSVRVVRLAFNLYTDGTPSIDDYKRKDEQIGECRGYSVSDIFCCGYAMYFWQGIKLRYPEYCQKQRSVEEILAEMEKKRAENSTDGNEE
Sequence
>40152..40334
bacteriumD1636MLKIRLMGTKNDIKWFEKILKRQPKVAVTEVSELYRNKGTNRYYRAYVEVQKANIKEKSD
Sequence
>40352..41137
bacteriumD1636MCKVIAIANQKGGVGKTTTTSNLGIGLAKQGKRVLLIDADAQGSLTASLGFTEPDKLEVTLASVMEKVINDEEMEPGYGILKHEEGIDLMPGNIELSGLEVSLVNVMSREIMMRSYMDMVKEQYDYILIDCMPSLGMITINAFACADSILIPVQAAYLPVKGLEQLIKTIGKVKRQINPRLEIEGILLTMVDNRTNYARDITALLIETYGSRVRIFENSIPMSVRAAETSAEGVSIYQHDPKGRVAGAYQSLTEEVLGSGQ
Sequence
>41127..42002
bacteriumD1636MGSKAGSASKVKLNTFDDLFGGAENTAGEQIIHAKLADLHTFRGHPFRVLDDEKMEETTESIGKYGVLVPGIVRPRAGGGYEMIAGHRRKRGSERAGLDTMPVIVRDYTDDEATIIMVDSNIQREDILPSEKARAYAMKYEAMKHQGSRGGSTLDEVGEAAGESGKTVQRYVWLARLSDDLLDMVDKKKIGIAQGVDISFLTEEAQQWVSVILGETGAAMNASQSAKLKEYGKSGELTPAMVRLILAEEKPKERKVTIKGDKINRYFPEEYSNDDIEGIIIQLLEEWQSKQ
Sequence
>42016..43074
bacteriumD1636MGEPLKFDYYYGIEAEQFSFYRVPRLLIKDERFKGLSSDAKLLYGLMLDRMSMSMKNGWLDDENRAYIIYTIENIREDLGCSKEKAVKVLAELDASKGIGLIEKIRRGLGKPDIIYVKNFIIQDEGRKEPSNADVSAEVGKTDFKRSEKPTSRSQENRLQEVGKTDFSRSEKLTSRGRENQLQEVGESDPNYTDYNQIEKNYTDMSYTNPINQSTGKADAIDAIDETSAYMALIRDNLDYEHHMKYGQHGDREMYEEIYETVCDVVCVKRKTIRINGEEYPYELVKSRFLKLNSSHVEYVMGCMRETVTKITNIRAYLITALYNAPSTMSHYYQQEVQHDMYGGGWAEKGIT
Sequence
>42820..42838
AAGCGAAAGACAATCCGCA
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 57671 bps
Phages: 1
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Click on a sequence to see details.
Locus 1: attL (Region 1)
Locus: attLORF Start: 33149
ORF Stop: 33167
Strand: Forward
Protein Sequence: AAGCGAAAGACAATCCGCA
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 2: D7V72_13285 (Region 1)
Locus: D7V72_13285ORF Start: 34770
ORF Stop: 35399
Strand: Forward
Protein Sequence: MTTLICENVTYQYEKGSKVLEHITTQFETGKMYAILGASGSGKTTLLSLIGGLDIPQEGKIMFNGRDISEMGLEYHRRNHVSVIFQNYNLIDYMTPIENVKLTAKQDALPILKQLGLTEDEAKRNVMKLSGGQQQRVAIARTLVSNAPVILADEPTGNLDKDTAAEITGILKNCAHQMNKCVIIVTHSNDLVKQADTVFKLKKGRLLQI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: D7V72_13285, ABC transporter, phage(gi371496158), PHAGE_Plankt_PaV_LD_NC_016564
Homolog/Ortholog E-Value: 4.75e-32
Locus 3: D7V72_13290 (Region 1)
Locus: D7V72_13290ORF Start: 35396
ORF Stop: 35566
Strand: Forward
Protein Sequence: MKYEWIYCPICKKKTHNKFREDTVLKNYPLYCPKCKRETIINAKNMQVFIITEPDT
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: D7V72_13290, conjugal transfer protein
Homolog/Ortholog E-Value: N/A
Locus 4: D7V72_13295 (Region 1)
Locus: D7V72_13295ORF Start: 35793
ORF Stop: 36032
Strand: Forward
Protein Sequence: MGGQPVKKILVSARGLFIQEVEVKSLHIRTNISINRKGTTALTVFLLSFFVGIRRRAVSGVGCRSPPFNLDFQKNSDWR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: D7V72_13295, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: D7V72_13300 (Region 1)
Locus: D7V72_13300ORF Start: 36039
ORF Stop: 36467
Strand: Forward
Protein Sequence: MAYNKAREERKWRIWKEAEEKQLRSLGVSEGDIEKLRVHDWAIFNSDRRYYEKLQDAGTYLEEVAEDTAQPEVKTVEEFLDSIENAVLYQELHQLDKLTLQALLMRMQGFSVTEISVELSLNKEVIYKRLNRFKKKIKKLLG
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: D7V72_13300, sigma-70 family RNA polymerase sigma factor
Homolog/Ortholog E-Value: N/A
Locus 6: D7V72_13305 (Region 1)
Locus: D7V72_13305ORF Start: 36666
ORF Stop: 36858
Strand: Forward
Protein Sequence: IDKYRAAPDFAKTHKEDNDTPVQPQSERPIRRRQWGRLCQTDSWGATPVASVRCPFGDFPCG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: D7V72_13305, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 7: D7V72_13310 (Region 1)
Locus: D7V72_13310ORF Start: 37049
ORF Stop: 37417
Strand: Forward
Protein Sequence: MERTIRRGDIYYAELNPVVGSEQGGTRPVLIISNNIGNRHSPTVIIAAITGRTQTKAKLPTHTEVKNFEGLDRESIVLLEQIRTIDKKRLKQYMGMMPAEAMARVDKALAISVSIKGGHRNG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: D7V72_13310, PemK family transcriptional regulator, phage(gi80159713), PHAGE_Clostr_c_st_NC_007581
Homolog/Ortholog E-Value: 1.77e-12
Locus 8: D7V72_13315 (Region 1)
Locus: D7V72_13315ORF Start: 37591
ORF Stop: 39396
Strand: Forward
Protein Sequence: MQNIAARHNPYIFLDKNRERTVVYYGRVSTEHEAQLAALENQLQWYDDQTERHSNWNVLQKYIDEGITGTQAKKRPAFLRMLEDARAGKFDLIVTREVCRFARNTVDTLVTTRELKNLGIEVYFVEDNIWTMDGDGELRLTIMATLAQEESRKVSERVRAGQKISRENGVLYGNGNIIGYDRVGSTYVINEEQAETVRMIFDLYLQGAGQTKIAKELCRLGRKDGHGQVSWSASKIGRILHNATYKGYNCYLKSFSNNYLEQKRIKNLDEETYMYVKGDFEPIVSEEVWNKCSEIRKARTTKMIVNKGERTYGKKSTQDVWLRKLRCSCGSTFRKNKWRTNKRGDEVFGYQCYNQVNNGSKAFREKNGLDTEGYCDIRMVGDWKLEIMAKKIFEGIWSEQERKNAILEVYRLLNEHYQSDTKNNQAAASALEGKIARLKNKIDNLISMRADGEITKEEFKSLKDTTEAELNKYMEEKSRLSELSDSESGMEFDIEKIRAVLEEALDFSKPKLDDSVIEKFVSQIIPVDNCRYRWDLNFLPNETQSLVCKVEGRKNHANATIEEGNEDEDESPRTYVLSMDYSNISVTAKNAYQSYVLHRRR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: D7V72_13315, putative site-specific recombinase, phage(gi85701406), PHAGE_Bacill_WBeta_NC_007734
Homolog/Ortholog E-Value: 6.13e-31
Locus 9: D7V72_13320 (Region 1)
Locus: D7V72_13320ORF Start: 39668
ORF Stop: 40186
Strand: Forward
Protein Sequence: MNNTALRAGAQSANNTHMVFANEEHEKFYYEKLEQARYQDCYHRALIYILGISEDTRNHFSQIYDIKSGYIKTECLHQGWQTSGSVRVVRLAFNLYTDGTPSIDDYKRKDEQIGECRGYSVSDIFCCGYAMYFWQGIKLRYPEYCQKQRSVEEILAEMEKKRAENSTDGNEE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: D7V72_13320, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 10: D7V72_13325 (Region 1)
Locus: D7V72_13325ORF Start: 40152
ORF Stop: 40334
Strand: Forward
Protein Sequence: MLKIRLMGTKNDIKWFEKILKRQPKVAVTEVSELYRNKGTNRYYRAYVEVQKANIKEKSD
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: D7V72_13325, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 11: D7V72_13330 (Region 1)
Locus: D7V72_13330ORF Start: 40352
ORF Stop: 41137
Strand: Forward
Protein Sequence: MCKVIAIANQKGGVGKTTTTSNLGIGLAKQGKRVLLIDADAQGSLTASLGFTEPDKLEVTLASVMEKVINDEEMEPGYGILKHEEGIDLMPGNIELSGLEVSLVNVMSREIMMRSYMDMVKEQYDYILIDCMPSLGMITINAFACADSILIPVQAAYLPVKGLEQLIKTIGKVKRQINPRLEIEGILLTMVDNRTNYARDITALLIETYGSRVRIFENSIPMSVRAAETSAEGVSIYQHDPKGRVAGAYQSLTEEVLGSGQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: D7V72_13330, putative plasmid partitioning protein Soj, phage(gi22091150), PHAGE_Natria_PhiCh1_NC_004084
Homolog/Ortholog E-Value: 6.19e-30
Locus 12: D7V72_13335 (Region 1)
Locus: D7V72_13335ORF Start: 41127
ORF Stop: 42002
Strand: Forward
Protein Sequence: MGSKAGSASKVKLNTFDDLFGGAENTAGEQIIHAKLADLHTFRGHPFRVLDDEKMEETTESIGKYGVLVPGIVRPRAGGGYEMIAGHRRKRGSERAGLDTMPVIVRDYTDDEATIIMVDSNIQREDILPSEKARAYAMKYEAMKHQGSRGGSTLDEVGEAAGESGKTVQRYVWLARLSDDLLDMVDKKKIGIAQGVDISFLTEEAQQWVSVILGETGAAMNASQSAKLKEYGKSGELTPAMVRLILAEEKPKERKVTIKGDKINRYFPEEYSNDDIEGIIIQLLEEWQSKQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: D7V72_13335, recombination endonuclease subunit, phage(gi100054), PHAGE_Gordon_Schwabeltier_NC_031255
Homolog/Ortholog E-Value: 6.68e-09
Locus 13: attR (Region 1)
Locus: attRORF Start: 42820
ORF Stop: 42838
Strand: Forward
Protein Sequence: AAGCGAAAGACAATCCGCA
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download