Submission Results
Sequence Name: Not Available
GenBank Accession Number: RIAN01000002.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: RIAN01000002.1.PHASTER.zip
gi|00000000|ref|RIAN01000002.1| Pseudomonas stutzeri strain PS_050 402024, gc%: 61.84%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 9.1Kb | incomplete | 10 | 7 | 156647-165794 info_outline | PHAGE_Cellul_phi12:1_NC_021791(1) | 59.26% | Show info_outline |
Region DNA
>1 156647-165794 ATGAACGAGCAACGTAACCTGAACACGCCTTACGAACCGGCGGCGAACCCCGAGCACGAC ACTTCCGTGGGCGGCCTGTTGCGGCAGCTGACGCGTGAAGTGCCGTCACTGTTCACCAAG GAGCTGGCTCTGGCCAAGGCCGAGCTGAGCGAATCCATCCGTGCCACCAAAGCCGGCGCC GCGAGCGTGGCCACCGGTGGTGCCGTGTTGCTGGCTGGCTTCATCGTGCTGCTGATGTCG GCAGTGTACTTCCTCGGAACGATGATGGAGCTGTGGCTCGCTGCGCTGATCGTCGGCGTG GTCGTGGTGGTGGTAGGCCTGATCATGGTCTCGGCGGGCAAGAAGAAATTCGAAGCGTCT TCGTTGAAGCCTGACCGCACCATCCATTCTCTGCAGAAGGACAAAGAAATCGTCAGGGGG CACGCATGAGTACGCACAATCAGATAGATCTGGAAGCGCAGAAAGACCCGAGCACGCTCG AACGCGAGATCGATCAGCAGCGTGCCGAGATCGGCAACATCGTCCATGCTCTGGAGAGCA AATTGTCGCCGGGGCAGATGATCGACACCGCACTGGGCTACGCCAAAGGTGGTGGCGGTG AGTTCCTGCACAATCTCAGCGATACGGTGAAGGCTAACCCCGTGCCCACCTTGCTTACCG GCATCGGATTGGTCTGGCTGATGGCCGGGCAGAATCGTCGCCCGGATTACAGTGCCCACG CTTCCAGCGGCCCGTCGATGACCGACAAGCTCGCGGCCAAGGCCTCTGGCCTGAAGCAGC AGGGCACCGGCGTTAAGGACAAGGCGGCTCAGATGAGTCATGACGCCTCCAGTAGTCTGG GCAGCGCCCGCCATCGGGTCAGCGACTCCAGCCGTCAGGCGGCGGAAAGCCTGAAGCACA CCGCCGATCGCGCTCGTGGTGGTTTCAGCCAGTTGCTCAACGAGCAGCCGCTGGCCCTTG GCGCCATGGGTATTGCCCTGGGTGCTCTGCTGGCTGCTACCGTTCCACCGACCCGTCGTG AAGACGAACTGATGGGTCAGAAGAGCGACGAGCTGACCGGCAAGCTCAAGCACAAGGCCC GTGAAGGCTACGAAATGGCCAGTGCCGAAGGTGAGCATCTGGCCAGCCAGGTAAAGCACG ACCTAGAGCGCGATCACGGCCAACCGGCCTCACGGCCGCACTGACGGAGCGCCGGCGGGT TGCCGTTCGCGAAGCGCGCGGTGGGCTTGAGTCCGATCGCATAACCTCCGATAATCCGCC GCCTGGCGCCGGTGTAGCTCAGTAGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGCAGG TTCGACTCCTGTCTCCGGCACCAATGAAATCAAGGCTCGCAGCTATGCGGGCCTTTTTCG TTTCTGGGTCGGGGTTACGCCGGGGTTACGTTTCGGTAGCCTTCCCGAGTGAGCTGGGCC GATGAGCGATGCTGGCAGATCATTGGCTTCGTATGGTTTGCTGAAACACACGCAATTGAG TTCCTCCGTCATTCCGTGGACGAAGTGGCCTTGGGGCTGCTCCTTTGCCGGCTGCGCTCT GCGCCACGCCGCCCAGGCTGGGATGGGAACGTGGCATTTGTCTGGTTTGGGTGGATACCG TTTTGGATACCGCCGCTTGGATACCACCTCAGTGCTGGTACGCAAAACGTGGTGCGCAAG GTGGTACGCACGGAAATGGACATTTCAGCGATGCGTACCGGCTCTCCGGGCTGACCATAT CGGCGGCCGTCCAATTCCTGTTTTGATGGCAAAGACGCTGAGCTTTTTCTTATGCAGCCT ACAGCCTCGGTATGAGGCATGCGTCTGCGGGCTTCGCCGGCCGTACCCAGACCTGCACGA GCTCTGGACCTGGATGATCCCGCTCGAAAACTTTACCTGTACACGTAGCCAGACTAGATG TGTCTTCTCCGTAGACATATTGTGTGAGCGGCTGACTCATTAAGCAGAGCCGTCCACTCT GCGACTGCAACAGCGGGTGCCAAAGGCAACTGCAGTACAGAACTCACCAACGCGGCAGCA AGGAGCAACTACAGATGAAAAAGCCGGCTACGGTGGCCACCCTAGAGGATTTAGGGCGCG TAAGGCTATCCAAGCACTTCTTCATGCGAGACTTCCTGTACTCGGAAATCTCGCAGATTG AAGGCATTCCCAACATCCCGGATTACCCTGACCGTGCCATTGAGGCTGGGCGTCAGCTTT GCGAATTATTGGTGGAGCCGCTCCAAGATCGTTTTGGCCGGATCTGTATTCGCTCCGCCT ATCGGGCTCCGGCAGTCAATGCGAAGGGCGCAGAAAACAAAAACCAATATAGTTGCGCCG CAAACGAGAGCAACTACGGTGGGCATATTTGGGATTACTTGGATACCGACGGCTATCTGG GTGCGACCGCTTGTGTTGTGGTGCCGGCGTTGTTGCCCTGGTATGAGGAGCGGCAGGACT GGACGCCGCTGGCTTGGTGGATTCACGACAATTTGCCATACGCCAGCCAATTCTGGTTTC CCAAACTGGCGGCGTTCAATTTACGGTGGAGCGCGAACCCGAACACGCTGCCCTCTATAA ACACCTATGTGGCAAACCCGCATACTGGAGATAAGCGGGCGCTGGTGAAGGAGGGTCGCC ACGCTTAGTTTGGAGGAGCGCAAAGCGATCATCCGGCCTTGGTTAGCCAGCTTGGGGTAA ATTCACACCGACGTGATAGATCGCTCGACGTTGCTTCAAGTTGAGCAAGTGGATCTGAAT AGATCCGTTTAGCGGGCCGCTAGGGGTTTAGCTTTACCCGATGATGGCACAAAGATATTG TGGCCATCGCAGCATCTCTTAGCGGTGCTGCTGCACGTCAAGGATGGCCTTCAAGCGCGC TGTCATTAATGCATACTCGCTTCCTCAGGCTGTTCGGCTCGGGCATGTATCGCCCTTGTC GGGGCGTCCGAATTGCTATCGTTTTTGGGACCGGCGCATGGACAAGAAGTCATTATCCGA GCGGGATATCTGCAGCAAATTCATCTCGCCTGCGATCGCCATGGCGGGCTGGGATATTCA GAAGCAGGTCCGTGAAGAAGTCAGCTTCACCAAAGGGCGCATCATTGTGCGCGGCAAGCT GCACAGCCGCGGCGAGTCACGCCGTGCTGACTACATTCTCTATCATCAGCCGAACCTTCC GATTGCCGTTATTGAGGCCAAGGACAATAAGCACTCTCTGGGCTCGGGTATGCAGCAGGC GCTGGGATATGCCGAAGCGCTGGACGTGCCGTTCGTTTTTTCCAGCAACGGCGATGGCTT CCTGTTTCACGACCGCAGCGGCACGGGTGATCAGGTCGAAACGGAGCTGAGCCTCGACCA GTTCCCAAGCCCCATCGAACTCTGGCAGCGCTATTGCCGCTGGAAGGGTCTCGAAGGTGA TGCTCGGCAAAAGGCCGAGGCGCCGTACTACGACGACGGCTCGGGGCGCATGCCGCGTTA CTACCAGACCAACGCCATCAATCGCACCGTTGAGGCCGTCGCGCGAGGGCAGGATCGCAT TCTGCTGGTCATGGCCACCGGCACCGGCAAGACCTACACCGCCTTTCAGATCATCTGGCG GCTGTGGAAGTCGAAGCAGAAGAAACGCATCCTTTTTCTGGCCGACCGCAACATCCTCGT CGACCAGACCAAGAACAACGACTTCAAGCCCTTCGGCGCGGCGATGACCAAGATCGCAAA ACGGCAGATCGACACGTCCTACGAAATCTATCTGTCGCTGTATCAGGCGGTCACCGGCGC CGAGGAAGAGCAGAACGTCTACAAGCAATTCTCCCGAGACTTCTTCGATCTGATCGTGAT TGACGAATGCCACCGCGGCAGCGCAGCGGAGGATTCGGCCTGGCGAGAGATTCTTGACTA CTTCTCCGGTGCTACCCACATCGGCCTCACCGCCACACCGAAGGAGACCAAAGAGGTTTC CAGCATCACCTACTTCGGTGAGCCGGTGTACAGCTACACCTTGAAGCAAGGTATCGAAGA CGGCTTTCTCGCACCGTACAAGGTGGTTCGGATCGATTTCGACAAAGACCTGCAAGGCTG GCGGCCACCCAAGGGCATGCTCGACAAGAATGGCGAGCTGATCGAAGACCGTATCTACAA CCTCAAGGACATGGACCGCACCCTGGTCATCGAGGCGCGCACTCAGCTGGTAGCGCAGAA GGTCTCCGAGTTTCTCAAAGCCACCGATCCGTACCAGAAGACCATCATTTTCTGCGACGA CATCAACCACGCCGAGCGTATGCGGCAGGCGCTGGTCAACCTCAATCCTGAGCGCGTGGC CGAGAATCGCAAGTACGTCATGCGTATCACCGGGGATGATCAGGAAGGCAAGGCCGAGCT GGACAACTTCATCGACCCTGAGTCGCGCTACCCGGTCATCGCCACCACCAGCAAGCTGAT GACCACCGGTGTTGATGCCCAGACCTGCAAGCTGGTAGTGCTCGACCAGCACATCAAATC CATGACCGAGTTCAAGCAGATCATCGGCCGCGGCACCCGTATCAACGAGGATTTCGGCAA GTACTGGTTCACCATCATGGACTTCAAGAAAGCCACCGAGCTGTTTGCCGATCCGGCCTT CGATGGTGATCCCGTTGTGATTTACGCCCCGTCAGGCGATGAGCCTCCGGTCCCGCCGGA CGATCTGCTGGAAGGCGACGGTATCAGCGCAGGCAGCGAGGCCGAGGCCGGTGAGCTGGA GTTCACCGGCGAGGAGGGCGGCAAAAAGCGCATCAAATACGTCATCGACAGCATTCCGAT CTATGTCATCGCCGAGCGCGTGCAGTACTACGGCCCGGACGGCCGGCTCATTACTGAGTC GTTGAACGACTACACCCGCACCTGCGTGAAAAAGCAGTTCGCTTCGCTGGACGAATTTCT CCGTCGCTGGAGTGATGCCGAGCAGAAGAAGGCGATCATTGACGAGTTGGCTGCTCAGGG CGTGATGTGGGAAGCCCTGGCCGAAGAAGTGGAAAAGAAGCAGGGCAAGGAGCTCGATCC GTTCGACTTGATCTGCCACGTCGCCTTCGACCAGCCCGCCCTGTCTCGTCGCGAGCGTGC TGACCAGGTAAAGAAGCGCAACTACTTCGCCAAATACTCCGGCGCGGCCCGCCAGGTATT GGAGGCGCTGCTGGATAAATATGCCGATACGGGTATTGAGCACATTGAAGACATCAAGAT CTTGCAGCTTGAACCCTTCAGCCAGTTAGGTGCACCTGTGGAACTTGTGAGGGCGTTTGG CGGGAAGCCTGGCTATCAGCAAGCCATTCACGATCTAGAGGCTGAGTTGTATGGCTCTTG ATGCCTTCGGCTAGCCGCGCTGCGCGCTAAGCGACAGCCACTCAAAACGTAACCGACTTG CAGCCTGCTTTGGAAATACAAATGGCATCAGCGTCTAAGGGTTCCACGCTACGTGGAATT ACCCCTCCGGGCACGGACGAATACATCCGTGCGCTACGCACCATCGAGCCAGAAATAACA GCGCTACAGCGTGACATGCTCATCGCGCACGCTCGCTTTCCTGGGCACGCATGCACAATG ACGCAGCTGGCTGCCCTAGTAGGGAAAGCCAGCTTCCAAGTAGCGAATATCCAATATGGA AGATTGGGAGGCAGACTTATTACAGCGCTTGGTATCCCTAGCCCGAAGTGGAAGGTTTAT GCCATTGCTGGCTTTGATGATGATCCCGAAACAGGGGAAAGTAGAGCCTACATGTACCCA GAGGTTAACGCTGCACTGCAGCAAATGGGATGGATATCGGGCGAAGCGTCCACCGAAGCA CCGCAGTCAAGCGAGCTGCAGTCGGTAGCAAAGCAAGCAGTGCCGACCTCAGATGTCGGC ATGCTTAGCATTAACGAAGTCATTACGACTTTGAAGCAGCGAGGGTTCACGAAACCTGCC CAATCGGGTCTCAAAGTGATCCGCCTGGATCATCCAGGCTTGGCGTCCCCTGTGTACGTC AAGCAAAGCAGCAGTATCCACGCTCGCCTGCAAGCGCCTCTCGTGCTTCATCCCCAGTAC GAGGCTGACGTACGAAACCTGCTATCGCTGCCCGGTATCGAAAGGGGGAATACGCGCTAC TACCACAACAGCAATCTGCGCGGCTTTCCTAAGCGGCGCAACGGAGGGGCAAGCGACATT GCCTATGGTGTGGATGTAGGGTTCCACAGCAGCGCGGCCTTGCTGGTGCTGGTGGACCAG TTACTAGGCGAGCCGCGGACGCTGGTTTCGAATACGGAGCACTTCGCTGAGTTAGCTCAG GTTCTACCAGAAGACATCGCGCTGACAGACACCGAACGCGACGCCTTGATCAAGGCGCGT GTCGGTCAGAGCGGCTACCGCGATGAACTGCTTGGGTATTGGGGCGGCTGTGCCGTCACC GACTGCTGCGTGCCGATGCTGTTGCGCGCCTCACACATTAAACCCTGGCGCGTCGCCAGT GGGGCAGAGCGGCTCGATCCGTTCAACGGCCTCCTGCTGACACCGAACCTTGACCTGGCC TTCGACCAGGGCCTGATTAGTTTCGACGACTCCGGGCAGATTCTCCTTGGCGAGGATCTG GACCCAGACAGCGCGCGAGCGCTCAATATCACCCCCGACCTTCGCCTGCGCCAGATCAAC CCGCGTCATCGCGGCTACCTGGCCTGGCATCGTGACAATCTGTTTAGGAAGTAAGCATGT CCATCAGCTCCACCATCAAATCCATCCAGGACATCATGCGCAAAGACGTGGGTGTCGACG GCGACGCCCAGCGCATCGGCCAGCTGGTCTGGCTGCTGTTCCTCAAGATCTTCGATGACC GCGAGCTGGAATGGGAGCTGATGGACGACAACTACCGCTCGCCCATCCCCGAAAGCTGCC GCTGGCGCACCTGGGCTGCCGACCCGGAAGGCATGACCGGTGATGCGCTGAAGGACTTCA TCGACAACAACCTGTTCCCGCAGCTGCAGAACCTGCACGAGTACAGCAATACGCCCGCCG CCTTCGTTGTGCGAAGCGTATTCGAAGACGCCTACAACTACATGAAGTCAGGCCAGCTGC TGCGCCAGGTGATCAACAAGATCCAGCAGGGTGTGGACTTCAACAAAGCGCAGGAGCGCC ACGAGTTCGGCAACCTCTACGAACAGCTGCTGCGTGACCTGCAGAATGCCGGCAACGCCG GTGAGTTCTACACCCCGCGCCCGGTCACCGAGTTCATGGTGCGCATGGTCGATCCCAAGC TCGACGAGAAGGTCATGGACCCGGCTTGCGGTACGGGCGGCTTTCTCACTTGTACCATCG AGCACAAGCGCAGCCGCTATGTGAAAACCGCCGATGACGAGCGCACGCTGCAAGCGAGCA TCTACGGTGTGGAGAAGAAGCCGCTGCCGCACCTGCTGGCCACCACCAACATGATCCTCC ACGGTATTGAAGTGCCGAACCAGATCCGCCACGACAACACCCTGGCCCGTCCGCTGATCA GCTGGGGGCCGAAGGAGCGGGTCGACTGTATCGTCGCCAACCCGCCGTTCGGTGGCATGG AAGAGGACGGTATCGAAACCAACTTCCCGGCCGCCTTCCGTACCCGCGAAACGGCTGACC TGTTTCTGGTGCTGATCATGCACCTGCTGAAAGAGGGCGGCCGCGCTGCCGTGGTGCTTC CTGACGGCTTCCTGTTCGGTGAAGGCATCAAAAGCCGCATCAAGGAAAAGCTGCTCACCG AGTGCAACCTGCACACCATCGTTCGCCTGCCCAACGGTGTGTTCAACCCCTACACCGGCA TCAAGACCAACTTGCTGTTCTTCACCAAAGGCACACCGACCAAAGAGGTGTGGTTCTACG AGCACCAGTACCCAGCCGGCGTGAAGAACTACTCCAAGACGCGCCCCATGCGTATCGAAG AGTTCGCCGTGGAAGAGGCGTGGTGGGGCAGTGAGACGGATGGTTTTGCCGCACGCGTGG AAAACGAGTTCGCCTGGAAGGTCAGCCTGGATGAACTGAAAGCTCGCAACTGGAACCTCG ACTGCAAGAACCCCCATGTCGGCGAGCAGATCAGCCACGACCCGGACCAGCTGCTGCGTG ACTACGCCCAGCTGCAAGGCGAAATCAGCGAGCTGCGCGACCAGCTCAAGGCCGTGCTGG CCGAGGCGCTGGAGCGGCCATGAGCGACGTCGCCATCTACGAAAGTGCCAGCGGCCAGAT CGCCGTCACCGTCGAGCACGACAGCGTATGGCTACGCCAGGAGCAGCTGGCCGAGCTGTT CGGCCGTGACCGCACCGTGATCGGCCGGCATATCCGCAACGTCTTCGCCGAGGGCGAGCT GGAGCGTGAAAGCAATGTGCAAAATCTGCACATTGCTGGCTCTGACAAGCCGGTGACCTT TTACAACCTCGACGTGATCATCTCTCTCGGCTACCGGGTGAAGTCCCGTGAAGGCACGCG CTTTCGCCAATGGGCCAATGAGGTACTCAAGCAACACCTGACCCGCGGCTACAGTCTCAA CCGCGAACGCTTCGAGGCCAACGCTCGCGAGCTGGAGGCGGCATTGGAACTGGTGCGCAA GGCCGCTCGCACGCCCGAACTGGGCGAAGCCGGCGGGCGTGGGCTAGTGGAAATCGTCAG CCGCTACACCCAGACCTTCCTCTGGCTGCAGCGCTACGACGAAGGCCTGCTCACCGAGCC AACGGGCAGCCCCGGCGGTGAGTTGCCCGATGCTAACCAGGCGCGCCGGCAGCTGGCCGA GCTCAAAGTCCAGCTGATGGCCCGTGGCGAAGCCAGCGACCTGTTCGCTCGTGAACGCGG CGACGGCCTGGCGGCGCTGCTCGGCAACCTCGAACAAAGCGTCTTCGGCGAACCGGCCTA CCCGAGCCTTGAGAGCAAAGCGGCCCACCTGCTGTACTTCGTGGTCAAGAACCATCCCTT TGCCGATGGCAATAAACGCAGTGGCGCCTACCTCTTCGTCGACTTCCTGCACCGCAACGA CCGCCTGCTTGATGCCGAGGGCAACGCCGTGATCAACGACACCGGCCTGGCGGCGTTGAC CCTGCTGGTCGCCGAATCCGCCCCCGCACAGAAAGACACCCTGATTCGCCTGATCATGAA CATGCTTGCTCCGGAAAACCGCCCATGA
Region Details
| Region | 1 |
| Region Length | 9.1Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 156647-165794 |
| # tRNA | 1 |
| # Total Proteins | 7 |
| # Phage Hit Proteins | 5 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 71.4% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Cellul_phi12:1_NC_021791(1) PHAGE_Gordon_Bantam_NC_031074(1) PHAGE_Mycoba_Panchino_NC_031281(1) PHAGE_Acinet_Bphi_B1251_NC_019541(1) PHAGE_Pseudo_PaBG_NC_022096(1) PHAGE_Entero_EFC_1_NC_025453(1) PHAGE_Paenib_Vegas_NC_028767(1) PHAGE_Bacill_BCJA1c_NC_006557(1) PHAGE_Paenib_Tripp_NC_028930(1) PHAGE_Mycoba_Gadjet_NC_023686(1) PHAGE_Clostr_c_st_NC_007581(1) PHAGE_Clostr_phiCD211_NC_029048(1) PHAGE_Salmon_7_11_NC_015938(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 14.28% |
| GC % | 59.26% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|RIAN01000002.1| Pseudomonas stutzeri strain PS_050 402024, gc%: 61.84%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 8 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 156647..157075 | phage holin family protein; EGV02_02995 | 0.0 | Showinfo_outline |
| 2 | 157072..157830 | DUF3618 domain-containing protein; EGV02_03000 | 0.0 | Showinfo_outline |
| 3 | 157914..157989 | tRNA | 0.0 | Showinfo_outline |
| 4 | 158701..159346 | PHAGE_Pseudo_PaBG_NC_022096: putative peptidase M15; EGV02_03010; phage(gi530787979) | 6.05e-05 | Showinfo_outline |
| 5 | 159624..161987 | PHAGE_Bacill_BCJA1c_NC_006557: DEAD box family helicase; EGV02_03015; phage(gi56694884) | 4.92e-25 | Showinfo_outline |
| 6 | 162398..163360 | PHAGE_Salmon_7_11_NC_015938: hypothetical protein; EGV02_03020; phage(gi345461254) | 3.53e-06 | Showinfo_outline |
| 7 | 163363..164829 | PHAGE_Acinet_Bphi_B1251_NC_019541: putative restriction-modification protein; EGV02_03025; phage(gi423261981) | 8.15e-28 | Showinfo_outline |
| 8 | 164826..165794 | PHAGE_Gordon_Bantam_NC_031074: hypothetical protein; EGV02_03030; phage(gi100132) | 3.10e-06 | Showinfo_outline |
Sequence
>156647..157075
PseudomonasstutzeriMNEQRNLNTPYEPAANPEHDTSVGGLLRQLTREVPSLFTKELALAKAELSESIRATKAGAASVATGGAVLLAGFIVLLMSAVYFLGTMMELWLAALIVGVVVVVVGLIMVSAGKKKFEASSLKPDRTIHSLQKDKEIVRGHA
Sequence
>157072..157830
PseudomonasstutzeriMSTHNQIDLEAQKDPSTLEREIDQQRAEIGNIVHALESKLSPGQMIDTALGYAKGGGGEFLHNLSDTVKANPVPTLLTGIGLVWLMAGQNRRPDYSAHASSGPSMTDKLAAKASGLKQQGTGVKDKAAQMSHDASSSLGSARHRVSDSSRQAAESLKHTADRARGGFSQLLNEQPLALGAMGIALGALLAATVPPTRREDELMGQKSDELTGKLKHKAREGYEMASAEGEHLASQVKHDLERDHGQPASRPH
Sequence
>157914..157989
GCCGGTGTAGCTCAGTAGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGCAGGTTCGACTCCTGTCTCCGGCACCA
Sequence
>158701..159346
PseudomonasstutzeriMKKPATVATLEDLGRVRLSKHFFMRDFLYSEISQIEGIPNIPDYPDRAIEAGRQLCELLVEPLQDRFGRICIRSAYRAPAVNAKGAENKNQYSCAANESNYGGHIWDYLDTDGYLGATACVVVPALLPWYEERQDWTPLAWWIHDNLPYASQFWFPKLAAFNLRWSANPNTLPSINTYVANPHTGDKRALVKEGRHAFGGAQSDHPALVSQLGVA
Sequence
>159624..161987
PseudomonasstutzeriMDKKSLSERDICSKFISPAIAMAGWDIQKQVREEVSFTKGRIIVRGKLHSRGESRRADYILYHQPNLPIAVIEAKDNKHSLGSGMQQALGYAEALDVPFVFSSNGDGFLFHDRSGTGDQVETELSLDQFPSPIELWQRYCRWKGLEGDARQKAEAPYYDDGSGRMPRYYQTNAINRTVEAVARGQDRILLVMATGTGKTYTAFQIIWRLWKSKQKKRILFLADRNILVDQTKNNDFKPFGAAMTKIAKRQIDTSYEIYLSLYQAVTGAEEEQNVYKQFSRDFFDLIVIDECHRGSAAEDSAWREILDYFSGATHIGLTATPKETKEVSSITYFGEPVYSYTLKQGIEDGFLAPYKVVRIDFDKDLQGWRPPKGMLDKNGELIEDRIYNLKDMDRTLVIEARTQLVAQKVSEFLKATDPYQKTIIFCDDINHAERMRQALVNLNPERVAENRKYVMRITGDDQEGKAELDNFIDPESRYPVIATTSKLMTTGVDAQTCKLVVLDQHIKSMTEFKQIIGRGTRINEDFGKYWFTIMDFKKATELFADPAFDGDPVVIYAPSGDEPPVPPDDLLEGDGISAGSEAEAGELEFTGEEGGKKRIKYVIDSIPIYVIAERVQYYGPDGRLITESLNDYTRTCVKKQFASLDEFLRRWSDAEQKKAIIDELAAQGVMWEALAEEVEKKQGKELDPFDLICHVAFDQPALSRRERADQVKKRNYFAKYSGAARQVLEALLDKYADTGIEHIEDIKILQLEPFSQLGAPVELVRAFGGKPGYQQAIHDLEAELYGS
Sequence
>162398..163360
PseudomonasstutzeriMYPEVNAALQQMGWISGEASTEAPQSSELQSVAKQAVPTSDVGMLSINEVITTLKQRGFTKPAQSGLKVIRLDHPGLASPVYVKQSSSIHARLQAPLVLHPQYEADVRNLLSLPGIERGNTRYYHNSNLRGFPKRRNGGASDIAYGVDVGFHSSAALLVLVDQLLGEPRTLVSNTEHFAELAQVLPEDIALTDTERDALIKARVGQSGYRDELLGYWGGCAVTDCCVPMLLRASHIKPWRVASGAERLDPFNGLLLTPNLDLAFDQGLISFDDSGQILLGEDLDPDSARALNITPDLRLRQINPRHRGYLAWHRDNLFRK
Sequence
>163363..164829
PseudomonasstutzeriMSISSTIKSIQDIMRKDVGVDGDAQRIGQLVWLLFLKIFDDRELEWELMDDNYRSPIPESCRWRTWAADPEGMTGDALKDFIDNNLFPQLQNLHEYSNTPAAFVVRSVFEDAYNYMKSGQLLRQVINKIQQGVDFNKAQERHEFGNLYEQLLRDLQNAGNAGEFYTPRPVTEFMVRMVDPKLDEKVMDPACGTGGFLTCTIEHKRSRYVKTADDERTLQASIYGVEKKPLPHLLATTNMILHGIEVPNQIRHDNTLARPLISWGPKERVDCIVANPPFGGMEEDGIETNFPAAFRTRETADLFLVLIMHLLKEGGRAAVVLPDGFLFGEGIKSRIKEKLLTECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGTPTKEVWFYEHQYPAGVKNYSKTRPMRIEEFAVEEAWWGSETDGFAARVENEFAWKVSLDELKARNWNLDCKNPHVGEQISHDPDQLLRDYAQLQGEISELRDQLKAVLAEALERP
Sequence
>164826..165794
PseudomonasstutzeriMSDVAIYESASGQIAVTVEHDSVWLRQEQLAELFGRDRTVIGRHIRNVFAEGELERESNVQNLHIAGSDKPVTFYNLDVIISLGYRVKSREGTRFRQWANEVLKQHLTRGYSLNRERFEANARELEAALELVRKAARTPELGEAGGRGLVEIVSRYTQTFLWLQRYDEGLLTEPTGSPGGELPDANQARRQLAELKVQLMARGEASDLFARERGDGLAALLGNLEQSVFGEPAYPSLESKAAHLLYFVVKNHPFADGNKRSGAYLFVDFLHRNDRLLDAEGNAVINDTGLAALTLLVAESAPAQKDTLIRLIMNMLAPENRP
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
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Length: 402024 bps
Phages: 1
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Locus 1: EGV02_02995 (Region 1)
Locus: EGV02_02995ORF Start: 156647
ORF Stop: 157075
Strand: Forward
Protein Sequence: MNEQRNLNTPYEPAANPEHDTSVGGLLRQLTREVPSLFTKELALAKAELSESIRATKAGAASVATGGAVLLAGFIVLLMSAVYFLGTMMELWLAALIVGVVVVVVGLIMVSAGKKKFEASSLKPDRTIHSLQKDKEIVRGHA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EGV02_02995, phage holin family protein, phage holin family protein
Homolog/Ortholog E-Value: N/A
Locus 2: EGV02_03000 (Region 1)
Locus: EGV02_03000ORF Start: 157072
ORF Stop: 157830
Strand: Forward
Protein Sequence: MSTHNQIDLEAQKDPSTLEREIDQQRAEIGNIVHALESKLSPGQMIDTALGYAKGGGGEFLHNLSDTVKANPVPTLLTGIGLVWLMAGQNRRPDYSAHASSGPSMTDKLAAKASGLKQQGTGVKDKAAQMSHDASSSLGSARHRVSDSSRQAAESLKHTADRARGGFSQLLNEQPLALGAMGIALGALLAATVPPTRREDELMGQKSDELTGKLKHKAREGYEMASAEGEHLASQVKHDLERDHGQPASRPH
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: EGV02_03000, DUF3618 domain-containing protein
Homolog/Ortholog E-Value: N/A
Locus 3: tRNA (Region 1)
Locus: tRNAORF Start: 157914
ORF Stop: 157989
Strand: Backward
Protein Sequence: AGVAQVEQRIRNAKVAGSTPVSGTA
Homolog/Ortholog Species: Trna
Homolog/Ortholog Protein: tRNA
Homolog/Ortholog E-Value: N/A
Locus 4: EGV02_03010 (Region 1)
Locus: EGV02_03010ORF Start: 158701
ORF Stop: 159346
Strand: Forward
Protein Sequence: MKKPATVATLEDLGRVRLSKHFFMRDFLYSEISQIEGIPNIPDYPDRAIEAGRQLCELLVEPLQDRFGRICIRSAYRAPAVNAKGAENKNQYSCAANESNYGGHIWDYLDTDGYLGATACVVVPALLPWYEERQDWTPLAWWIHDNLPYASQFWFPKLAAFNLRWSANPNTLPSINTYVANPHTGDKRALVKEGRHAFGGAQSDHPALVSQLGVA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EGV02_03010, putative peptidase M15, phage(gi530787979), PHAGE_Pseudo_PaBG_NC_022096
Homolog/Ortholog E-Value: 6.05e-05
Locus 5: EGV02_03015 (Region 1)
Locus: EGV02_03015ORF Start: 159624
ORF Stop: 161987
Strand: Forward
Protein Sequence: MDKKSLSERDICSKFISPAIAMAGWDIQKQVREEVSFTKGRIIVRGKLHSRGESRRADYILYHQPNLPIAVIEAKDNKHSLGSGMQQALGYAEALDVPFVFSSNGDGFLFHDRSGTGDQVETELSLDQFPSPIELWQRYCRWKGLEGDARQKAEAPYYDDGSGRMPRYYQTNAINRTVEAVARGQDRILLVMATGTGKTYTAFQIIWRLWKSKQKKRILFLADRNILVDQTKNNDFKPFGAAMTKIAKRQIDTSYEIYLSLYQAVTGAEEEQNVYKQFSRDFFDLIVIDECHRGSAAEDSAWREILDYFSGATHIGLTATPKETKEVSSITYFGEPVYSYTLKQGIEDGFLAPYKVVRIDFDKDLQGWRPPKGMLDKNGELIEDRIYNLKDMDRTLVIEARTQLVAQKVSEFLKATDPYQKTIIFCDDINHAERMRQALVNLNPERVAENRKYVMRITGDDQEGKAELDNFIDPESRYPVIATTSKLMTTGVDAQTCKLVVLDQHIKSMTEFKQIIGRGTRINEDFGKYWFTIMDFKKATELFADPAFDGDPVVIYAPSGDEPPVPPDDLLEGDGISAGSEAEAGELEFTGEEGGKKRIKYVIDSIPIYVIAERVQYYGPDGRLITESLNDYTRTCVKKQFASLDEFLRRWSDAEQKKAIIDELAAQGVMWEALAEEVEKKQGKELDPFDLICHVAFDQPALSRRERADQVKKRNYFAKYSGAARQVLEALLDKYADTGIEHIEDIKILQLEPFSQLGAPVELVRAFGGKPGYQQAIHDLEAELYGS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EGV02_03015, DEAD box family helicase, phage(gi56694884), PHAGE_Bacill_BCJA1c_NC_006557
Homolog/Ortholog E-Value: 4.92e-25
Locus 6: EGV02_03020 (Region 1)
Locus: EGV02_03020ORF Start: 162398
ORF Stop: 163360
Strand: Forward
Protein Sequence: MYPEVNAALQQMGWISGEASTEAPQSSELQSVAKQAVPTSDVGMLSINEVITTLKQRGFTKPAQSGLKVIRLDHPGLASPVYVKQSSSIHARLQAPLVLHPQYEADVRNLLSLPGIERGNTRYYHNSNLRGFPKRRNGGASDIAYGVDVGFHSSAALLVLVDQLLGEPRTLVSNTEHFAELAQVLPEDIALTDTERDALIKARVGQSGYRDELLGYWGGCAVTDCCVPMLLRASHIKPWRVASGAERLDPFNGLLLTPNLDLAFDQGLISFDDSGQILLGEDLDPDSARALNITPDLRLRQINPRHRGYLAWHRDNLFRK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EGV02_03020, hypothetical protein, phage(gi345461254), PHAGE_Salmon_7_11_NC_015938
Homolog/Ortholog E-Value: 3.53e-06
Locus 7: EGV02_03025 (Region 1)
Locus: EGV02_03025ORF Start: 163363
ORF Stop: 164829
Strand: Forward
Protein Sequence: MSISSTIKSIQDIMRKDVGVDGDAQRIGQLVWLLFLKIFDDRELEWELMDDNYRSPIPESCRWRTWAADPEGMTGDALKDFIDNNLFPQLQNLHEYSNTPAAFVVRSVFEDAYNYMKSGQLLRQVINKIQQGVDFNKAQERHEFGNLYEQLLRDLQNAGNAGEFYTPRPVTEFMVRMVDPKLDEKVMDPACGTGGFLTCTIEHKRSRYVKTADDERTLQASIYGVEKKPLPHLLATTNMILHGIEVPNQIRHDNTLARPLISWGPKERVDCIVANPPFGGMEEDGIETNFPAAFRTRETADLFLVLIMHLLKEGGRAAVVLPDGFLFGEGIKSRIKEKLLTECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGTPTKEVWFYEHQYPAGVKNYSKTRPMRIEEFAVEEAWWGSETDGFAARVENEFAWKVSLDELKARNWNLDCKNPHVGEQISHDPDQLLRDYAQLQGEISELRDQLKAVLAEALERP
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EGV02_03025, putative restriction-modification protein, phage(gi423261981), PHAGE_Acinet_Bphi_B1251_NC_019541
Homolog/Ortholog E-Value: 8.15e-28
Locus 8: EGV02_03030 (Region 1)
Locus: EGV02_03030ORF Start: 164826
ORF Stop: 165794
Strand: Forward
Protein Sequence: MSDVAIYESASGQIAVTVEHDSVWLRQEQLAELFGRDRTVIGRHIRNVFAEGELERESNVQNLHIAGSDKPVTFYNLDVIISLGYRVKSREGTRFRQWANEVLKQHLTRGYSLNRERFEANARELEAALELVRKAARTPELGEAGGRGLVEIVSRYTQTFLWLQRYDEGLLTEPTGSPGGELPDANQARRQLAELKVQLMARGEASDLFARERGDGLAALLGNLEQSVFGEPAYPSLESKAAHLLYFVVKNHPFADGNKRSGAYLFVDFLHRNDRLLDAEGNAVINDTGLAALTLLVAESAPAQKDTLIRLIMNMLAPENRP
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EGV02_03030, hypothetical protein, phage(gi100132), PHAGE_Gordon_Bantam_NC_031074
Homolog/Ortholog E-Value: 3.10e-06
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download