Submission Results
Sequence Name: Not Available
GenBank Accession Number: RJKS01000002.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: RJKS01000002.1.PHASTER.zip
gi|00000000|ref|RJKS01000002.1| Curtobacterium sp. ZW137 Ga0304874_12, whole genome shotgun 926185, gc%: 70.93%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.6Kb | incomplete | 20 | 7 | 535439-544081 info_outline | PHAGE_Lactob_PLE2_NC_031036(1) | 65.72% | Show info_outline |
Region DNA
>1 535439-544081 TTAGCTGACGCCAATGACAAGAGTGCTGCGGGCGGCTTCGATGACGTCGTTGGTGATGAC GTCGAGTTCGTTGATGCGGAGCACGCGTTGGATCTGCGGGAGGAGTCGTTCAAGGAGGCG GAAGTTACCGCGGGTGATCCGTTCGATGGCGGCGACGGCTTGGGCGTCGGTGAAGTCGTC AGGGTCGAGGGTGTGGCCGAGCTTTCGCCACTGGCGTTCGAGGACGAACAGCAGCTCGTC GTGGCCGAGTGGGCGGTACTGGTGTGCGAAGCCGAGACGGCTGTAGAGCTGCGGGTAGTG CGCGAATTGCTTCTCGATGCCGGGCATCCCGATCAAGATCAGCGCTGTGCCTGTGCGGTC GTACTGATCGCGGAGCCACTCGATCGCGGTGGCGGTAAGCCGTTCCGCTTCGTCGACGAT GACGAGCTCGAGCTGGGACGGTGGTTGACCGTGGCGGTAGCTGACGGTGTGACCGATGAG TCGGAGGTGTTCCTCGACGAGGATGTTCGTGTGGCGTAGGTCGTAGTCGAGCTGGTCGCG AAGGGACCGCAGGGAAGCAGCGACCTGCGGCGTGTAGAAGACGGTGCGCGCTCGGTGGGC AGCGGCGTAGACCTTGAGGTCGCTTTCGGATCGAGGACCCCATTGCTTGATGAAGGGTCC GATGAGGTCCCAGTGTGCGTAGCGGCGGGCCGAGAGCGTCTTGCCGACGCCGGCGGCGCC GAAACAGATTCCGATGGTCTGTTGCTTGCGAACGGCGTCGGCGAACTCCGTGAATCGACG GTGTTCCTTGGTGACGACGAACTGGTTGGGCATCACTGGTCCTCCTCGTAGGTACGGAGC CTCCGTCGGCGCTGCTGAGATACGGGCTCGGACGGTGGCTCCTGCGCTGGCGGATGTTCG ACGACAGCGATGCGTTCTTGGATCTGTCCGCGGAGCGCTCGGCGGTGCGCGTTTCTCGCG GCCTGGATCTGTTTGAGGGAGACGGTTTCGCTCTGGTGTTCCGGGTTGACTGCGGTGCAG AGGTAGATGTTGCGGTGGAACACGCGGATCTCGGTGATGTCTCGTGGGTCGTAGCGGATC GTCACTGTCGCCCCGACGAACGGTGCCAGTGTTGGTGACGTGGAGCGAAGGCCCTGGAAG CGGATGCCGTCGCGTTGCACGATCCGGGACGCCGGCACGGTCAGGAGAAATCCGTCGAGC TGTTCGAGGGAGTCGGGCATGCGGGCCAGCCAGCCGCCAGCGATCCATGCGTCCACCGGG GACTGTTTCGTTTCCCGGTGAATGCGAGTGTTGTAGCGGCCGATGAACGCCACGACAGCC GCATCGAGGCCAGCGAGGTCGAGGACTGGTGACGGAGCGGGCGTCTTCGTCGTCAGGTGG CCGGGCAGGCCGGTGAGCAGTTCCGTGTTGACGGTGCCAAAGAACCGCTCAATCTTTCCG CGGCCTTGCGGTCGACCGACTGCGGAGTGCACGATCCGAAGGTGCAGTGATCCGGCGGTT GCACTGAGTCGGTGGCTGGTGAAGTCGGACCCGTGGTCGACGTAGAGCACGTTGGGGATG CCGCAGATGGGCCAATCGGGTTGGACCTTGTGCCAGATCGCCTGCCGGAGAGCGAGCGCG GTGTTCGCCGCCGATGGCGCACCGAGGAACACCAGATACCCGCACACCGCTCGGGAGTAG TCGTCGAGGATGACGGTCAGCCAAGGACGAGCCGGCCTCCCGTCCGGGCCGACAATCAGG ATGTCGAGCATCGTGTGATCGGCCTGCCAGACCGCGTTCGGCTGGTCCGCTCGACGCCGG AGGAGCAGCTCGTGTTTATCCCGGTACGATGCAGGCCCGTCGAGCGCCAGGGTCACCATC CCTGGGTCGAGAGCGCGCACGATGTTCTGCACGGTCGAGTACGACGGTGCATCGGCGTCG CGGCCAGCGCAGCGCTCGACCAGGCGCCGGTGGATGGTGGCGATCGAAGGTCGTGGCCGG GTCAGGGCCAGTGCCTCAACCAGAGCCACGAGATCCGGCGATGTGCGCCTGACCCCACGA TCCAGGCGAACACTGTCGGAGAGCGCGTCGTAGCCGCCTGTTCGGTAGCGGGCGAGCCAC CGCGTCAGGGTCCGACGCGGCACACCCGTTGTGCGGACGAGCTCGGCAAGCGGAATCGCG TCATCGACATGCAGTCGAAGGATTCGCCACCGCTCGTCCGCGTCCACGGTCGCTACATCG ACGGGGAGGGCTTGGTGCGTCGAGCGGTCATGACCTCGGTGTGCTTCGCGAGCGTGCGGT AAATGGTCGTCCTGCTGACTCCGAGGACGTCTCCGATCTGCGCGACGGTCATGTCCTGCT GCTCGTACAACCGGCGCGCCGTTCGGACTTGGTCAGAGGACAGCCGCGGTGGACGCCCGC CGGTGCGGCCACGGGCGCGAGCCGCAGCAAGGCCGGCATTGGTGCGCTCCTTGATGAGGT CCCGTTCGAACTCCGCCAGGGCCGCGAACACGTGGAAGACGAGGCGGCCGCCGGGCGAGG TGGTGTCAATGGTCTCCTGCAGCGACCGGAATCCGACACCACGGTCCGCGAGGCCGTGCA GCTGGTCGATGAGGTGCCGGATCGAGCGCCCGAGTCGGTCGAGACGCCAGACGACGAGTG TGTCGCCGGGGCGGATCTGGTCGAGGAGCTTGTCGAGTTCTGGTCGGTGCTCGAGTGACC CAGACATGGTGTCGACGAATACGCGGAAGCAGCCGGCAGCGTTCAGCGCATCGACCTGCA ATGACGCGTCCTGGTCGGTGGTGGATACACGCGCGTACCCGAGGAGGTGCCCCATGAAGA GAACGTAGCGAAACTCGACCAGGAGGGGTAGAGGCGACACGTAGATTCCGGGACTGAGTT CCGCTACAAGACACGCCGTCTCGCATATTGCCGGAGCGTCGGTTCGGACAGTTGTAGCGG AATGGTTCGTTATCGGCACATAGCTAGATCCGGGCTTTGCAGGGAGCCGCTGCGGGTGGT GCTCTCAACGATGGCGTCCGTTTGCCGGTGACGGGTGTGGCGTTGCCAGGACGGGGATGA CGCGGGCGCAAGCGTGGAGGGTGAGGTGTCGCATGACGCTGTCGATGGCCATACCGCCGC TGGCGACCACGGCGCGGAGTTCGGGGAGCATCTCGAGCAGTCCGGCAAGTGAGCGACGGC CGCGCCCGATGTCGTCGGGTCGGACGGGAATCGGTGGTTCCCGCGAGGTGAGGGTTAGGC GCAGGATCTGGCGTCCCAGGAGTCCGGTTTCGGGCGGCCCGCTCGGAGCGGGGGTCGACG TGGTCGCGGGGAGGTCTTCGGTAGGTGCTGGCTGAGGCGAGGGGCAATATCGTGCACATG TGAGGTGGACACAGCAGCGGTGGGAACGGGTAATGCGGTGGCCGCTTGCGATCGCGGCGG GAGCGTTTCTTGCTGCGTATGCGGTGGAGGTGCTCGCCGATCATCACGGCCGCAGCGCGT TCGTGTCGGATGTTGTGATCAACGTCACGTGGGCGATGTTCGTGGTGGACTACCTCGTGA CGCTCCTGTTGGCGCGTCATCGTGGTCGGTGGTTCGTGCACCATCTGGTGGACCTGGCCG CTCTTGCGTTGCCGTTCCTGAGGCCTTTACGGCTGTTGCGGCTCGCGCAGCTGTTCCGAG TCCTGCAGCGGAGCACCGGGGCTGCCGTTCGCGGGCGAGTGATCGTGTACGTGATTGTGA CGACAGCTTTGCTGGTGTTCGTGTCCGCGTTAGCGATCCTCGATGTGGAACGGCATGCCG ACGGCGCGACGATTGTGTCATTCGGGGATGCGCTGTGGTGGGCGTTGGTCACGATCACGA CCGTTGGGTACGGTGATCTGACCCCGGTGACCGAGACAGGTCGGTTGATCGCCGCGGGAG TGATGATCAGTGGCATCGCGCTGCTGGGTGTAGTTACCGCGACAATCGCGAGCTGGATCA TTGATCAGGTCGGTCGACGTGACGACGAAGCACAGATCGCGACCCGGCGTGAACTACGTG AACTGTCTGCCGAGATCCGGTCGCTGCCGGAGGAGCTGCAGCAACGTCGACCGCCGTCGG GTGAATGATTCCCTGCCACGGTGTCCAGATCGTTCCGTGGCGTCATAGTAAGAGTGAGAT CGGGTCTTCAAGGAGGCTGGTGAGCGTCTGTAGGTATTGAGCGGCGAGGGCGCCGTCGAT GACGCGATGGTCTGCGGAGAGCGTGAGGCGGATCCTGTGGCGGACGACGAGGTTGCCGTC GTGTACGGCAGCGTCCGCCGTCGCTGCTCCAACGGCGAGGATTGCGCTTTCGGGCGGGTT GATGATGGCGGTGAAGGACTCCGCGCCGAACATGCCGAGGTTACTGACGGTGAACGTGCC GCCGGTCATGTCGGCGGGTTGCAGTTTCCGATCCGCCGCACGGGCGCTGAAGGATCGGCT GGCGGCGCTGATGCTGCTGACGCTTCTGGTGTCGGCATGTGTCATGACCGGGACAACGAG GCCGGCCGGCGCGGCCATCGCGATCCCGATGTTCACTGCAGTGTGCTGCGTGATCGCAGG ATCCGGGTCGTCTTGGTAGGAGACGTTGATGGCCGGGTGCGCGGCCAGGGCGAGGGCTGC GGCCTTGACGATGAAGTCGTTGAGGCTGACTTTCGCGGTGTCTTGTCTGATCCGTGATGC GTTCACCATGGTGCGCAGATCAATGAGGGCGTCAGCGTCGGCGACGGCGGTGACGGTGAA GTGCGGGATGGTGCGGGCGCTCTCGGTGAGTCGGCGAGCGATCACCTTCCGCGTCCCGGT CATCGGCGTCGTCACGTCCGCGTCGGTGTCTTGCTGATGGTGTGTGGAGGCGCTGCCAGG CACGGGGAGCGTTGCCGTCGACGGGACATCGTGCTCTAAAGCTGCAGCACTCTGGTCCGC GTCGATGATGGCTTCGACATCAGCCCTGACAAGGCGGCCGCCGGGGCCCGATCCGTGAAC GGTGGCGATGTCGACGTGGTGTTCGCGAGCGAGTTTGCGTGCCAGTGGGGACGCGAACGC GATGTGCTCTGCCGGCGCGGGTATGCCTTCGGAGCGTTCACGCTGTTGCGGCTCCACGGG GGGATCTTCCGATGTGCGTGCGGGGTGGTCGTGCTCGGATGATGTGTCGAACGCGGGAGC GGGGACGAACGTTGGAGTGGTCGGCGATGTGTGCTCATCGGCGGGCGAGTCCGCGCGTTG GCCATCCGCCGGGCTGAGCGCGGGGCCGGAACCGTCGTCGAGCGTCGCGATGGGAGTCCC TATCGCAACGTTCTCTCCTTCGGGAACGAGGATCTCCGTCAAGGTGCCAGCGTCGTAGGC TTCGTATTCCATGGTGGCTTTGTCGGTTTCGATCTCGACGAGGATGTCGCCGACTTCGAC GATGTCGCCGGGGTGCTTGTGCCAGGCGGAGATGGCGCCTTCTTCCATCGTGTCCGACAG CCGCGGCATGGTGATCTGGATCATCGGGACGTTCCGTTCCGGTCGGAGGCGCGCCAGCCG ACCGCGTGGAGGGTTTCGTGGACGGCGGTAATCGCGTCCTCGAGCGCGGGAAGGGCCACC GTTTCGAGGGGCTTGGCGTATGGCAGGGGAACTTCGGCCATCGCGACGCGGCGGACTGGT GCGTCGAGGTCGTCGAAGGCGCCGTCGGAGATCGACGCGGCAAGCTCCGCGCCGATGCCG TAAGTGAGCCAGTCGTCTTCAAGGACGACCGCGGCGTGGGTCTTCCGCACGGAACGGATC ACGGTCTCGCGATCGAGTGGGCGGAGGCTTCGCAGGTCGATGACTTCGGCGTCGATGCCG TCCTCGGCGAGCCGTGTTGCTGCTTGCCGCGCCAGGTGCGCGGTGCGTGAGTAGCCGATG AGCGTGACGTCAGACCCGACGCGGCTGACAGCGGCGCGACCAATTTCGACGTCGTCGACG TCATCGGGTACGTCGTCCTTGATGTTGTAGAGGGCGAGGTTCTCGAGGAACAGCACCGGG TCGTCGTCCCGGATCGACGCACGCAGGAGCGTACGTGCGTCCGCTGGGGTGGACGGTGCG ACGACTTTCATACCGGGTACGAACGCGTAGTACAGCTCCACGTTCTGCGAGTGCGTTGCA CCGAGCTGTTGACCGCCGCCACCTGGTGTGCGGATCACTAGCGGTACGCGGCTCTGCCCG CCGAACATGCCGTAGATCTTCGCGGCGTGGTTGACGATCTGATCGAGTGCGAGGAGGGAG AAGTTGATGGTCATGATCTCCACCACCGGTCGCAGTCCGAGCATCGCGGCACCGATCGCG GCACCGGTGAACCCTTCTTCCGCGATTGGGGTGTCGCGGACACGGCGTGGCCCGAACTCC TCGAGCAGCCCCTGAGTGATTTTGTACGACCCTTCGAATATCCCGATCTCTTCGCCGAGC AGGAGCACGTTCTCGTCCGCGAGGAGTTCCTCGCGGAGCGTCATCCGGAGCGCGTCCCGG TAGCTCATCACAGTCATCGGGTCTGCTCCTGACTTGTCGTGGCGGGATAGTTCGTGTCAG TGGGCGGTGGGAACAGCGGCTGTGCAGGGAGCCGGCGCGTGTCGTTCGGGACCGGTGTGG CGTAGGTGTAGTCGAACAGGGTGCTGGGGTCCGGGTGGGCGCTGTTCGCGGCGTAGTCCG CTGCCGCGGTGGCTGCAGCGATGGCGGCGGCGTCCATGGCGGCGGCGGCATCGTCGTCGA TGATCTCTGCGGCGATCAGCGCCGCCCGGTAGGCGGCGACCGGGTCGTGCTCGCGGAGCG CTTCCGTTTCGCTGTCGGTGCGGTACTTCGCCGGGTCCACCACCGAATGGCCTTTCAAGC GTTCGGTGGTGAGTTCCAGCAGGAACGGCTCATTTCGACGCGCTGACGCGAGTGCGCGGG TCATCGCTTGCTGCACGGTGACCGGGTGCAGCCCGTCGGCGCGTTCGGCGGCCATCCGGT AGGAGGCAGCGCGCTTGTACAGTTTCGGTTCCGCGGAGGCGTGTTCGACGGTCGTGCCCA TCCCGAGCTGGTTGTTGATGATGACGTACACGATCGGCAGATGCCACAGCGCGGCGAGGT TCAACGACTCGTGGAACGCGCCGATGTTCGTCGTCCCGTCTCCGAGCGTGCACACCACGA CCTCGTCGCCGCCGCGGTAGTCGATCGCGAGGGCTGCCCCGGTGGCGAGCGGGATTTGCC CGCCGACGATCCCATAGCCGCCGAGGAGCCTCGCGGTGAGGTCGAACATGTGCATGGAGC CGCCCCAACCACTGGAAACCCCGTCGACGCGGCCGTACAACTCCGCCATCACCCGGTTCG GGTCGATTCCGCGGCCGATCGCGTACCCGTGCTCCCGGTAGTTGGTGAACAGGTAATCCA TCGGCTGCATCGCGGTCGTGATCCCGGCGACCGCAGCCTCCTCGCCGAGATTCAGGTGGC AGTATCCACCGATCAGGGCTTGCGTGTAGGCGCGGGCGGCGCGTTCCTCGAACCGCCGCA CTCGGAGCATCAAGGACAGCAGCTCAGCTTGTTGCTCTTCGGGGATGTTGTCGGGCTCTT GCGTCGGCGTTGTGCGGGAGGTCATAACGGTCTGCTGCTCCTTTGCGCAATTGCCCATCC GACCCGTAACGCATTCACGGCGCGGAGGTGTTGTTCGGCCCGGTGCCGACCGTTGGCCGG TGAGGGGTGTGGCGCGGCGATCACCGGTAGCACAGTCGGGGCGTCTGTCATGGTGAGGTA CCGCATGACGCCGTCCAGCGCCGTGGCTCCGAAGGTGACGATCGCGGCCAGTTGCGGAAG CGAGGCAAGGAGCGTCGACAGCGCGGGGATGCTTTCCACCAGATCTGCTCGCGTGGGTCT TCTCGCGAGTTCCCACGGCACGATATTCCACCGCAGGTACGCCGTACGCGGCAGCCCAGA TTCCGCACGCGCGCGCCTGAACGCAGCCACTGTCGGGCCGGGATTGTCCTCGCTGCAGAT CGCACCCGCGCCGACCGCGATCGTGGCGGGACCGGGCGATTCCATCAGCACCAGGACCTG GGATTCGACCCCACCGGAGTGAGCGTCGAAGCCCGGCACGAATCGCCTGGTCCCATCCGG TGCGAGCCGCCACATCTCCGCCAACCCGTTCAGCGACCGAACATCCGCCGGTGCGAACGT CCGACCGGTGTCGCGCACAGCGGCGGCAGCATCACGTGGTGATCGCCGCATCAAGCTGGC TTCGGGGGCGCGAGGAGGGTGCCGCGGATGACGGAGCCGTGGAAGGTGCGGACGGCAACA GTGATCCACGCGGCGACGAGGCCGGCGTAGTACAGGACGGCGAGGCCAGCGACGACGGTG AGTCCGGAGTGCAGGGCCAGGCCGTTCAGGCCGGTGACGCAGGTGCCGACGGGGAACGTG AACGACCACCAGGTCAGGCTGAACGGGAGGTGCTGCTTCGCGGTGCGGATGGTGATGGCG AGGGCGATGACGGTCCACAGCAGCGCGAAGCCGAGCATCGCGAACCCGTACACCAGCGCC ACGACCAGCAGGGCATGCGCGGTACTCGCATCGACAACGGTGGGGGCGTTCGAGGCGAGG AGGTTCACGGCGGTGATCGACTGCCCGACCGGCCCGAGGACGATCCACAGAGTCGGGACC ATG
Region Details
| Region | 1 |
| Region Length | 8.6Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | transposase |
| Region Position | 535439-544081 |
| # tRNA | 0 |
| # Total Proteins | 7 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 85.7% |
| # Bacterial Proteins | 1 |
| Attachment Site | yes |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Lactob_PLE2_NC_031036(1) PHAGE_Escher_D108_NC_013594(1) PHAGE_Rhodov_RS1_NC_020866(1) PHAGE_Entero_P1_NC_005856(1) PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766(1) PHAGE_Prochl_P_TIM68_NC_028955(1) PHAGE_Salmon_Fels_2_NC_010463(1) PHAGE_Synech_S_SM2_NC_015279(1) PHAGE_Bacill_BalMu_1_NC_030945(1) PHAGE_Entero_Mu_NC_000929(1) PHAGE_Vibrio_VH7D_NC_023568(1) PHAGE_Burkho_KS10_NC_011216(1) PHAGE_Entero_SfMu_NC_027382(1) PHAGE_Vibrio_ValKK3_NC_028829(1) PHAGE_Vibrio_nt_1_NC_021529(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 14.28% |
| GC % | 65.72% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|RJKS01000002.1| Curtobacterium sp. ZW137 Ga0304874_12, whole genome shotgun 926185, gc%: 70.93%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 9 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(535439..536251) | PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: DNA transposition protein B; EDF55_1556; phage(gi971741505) | 1.56e-10 | Showinfo_outline |
| 2 | 536147..536160 | attL | 0.0 | Showinfo_outline |
| 3 | complement(536251..537645) | PROPHAGE_Deinoc_R1: transposase, putative; EDF55_1557; phage(gi15807743) | 1.99e-23 | Showinfo_outline |
| 4 | complement(537651..538298) | PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; EDF55_1558; phage(gi169936026) | 5.90e-56 | Showinfo_outline |
| 5 | 538831..539526 | PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; EDF55_1559; phage(gi100027) | 2.91e-19 | Showinfo_outline |
| 6 | complement(539561..540922) | pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); EDF55_1560 | 0.0 | Showinfo_outline |
| 7 | complement(540919..541935) | PHAGE_Synech_S_SM2_NC_015279: transketolase central region-containing protein; EDF55_1561; phage(gi326781943) | 1.89e-12 | Showinfo_outline |
| 8 | complement(541932..543056) | PHAGE_Synech_S_SM2_NC_015279: transketolase central region-containing protein; EDF55_1562; phage(gi326781943) | 1.26e-11 | Showinfo_outline |
| 9 | 544081..544094 | attR | 0.0 | Showinfo_outline |
Sequence
>complement(535439..536251)
CurtobacteriumspZW137MPNQFVVTKEHRRFTEFADAVRKQQTIGICFGAAGVGKTLSARRYAHWDLIGPFIKQWGPRSESDLKVYAAAHRARTVFYTPQVAASLRSLRDQLDYDLRHTNILVEEHLRLIGHTVSYRHGQPPSQLELVIVDEAERLTATAIEWLRDQYDRTGTALILIGMPGIEKQFAHYPQLYSRLGFAHQYRPLGHDELLFVLERQWRKLGHTLDPDDFTDAQAVAAIERITRGNFRLLERLLPQIQRVLRINELDVITNDVIEAARSTLVIGVS
Sequence
>536147..536160
GCCGGCGGCGCCGA
Sequence
>complement(536251..537645)
CurtobacteriumspZW137MDADERWRILRLHVDDAIPLAELVRTTGVPRRTLTRWLARYRTGGYDALSDSVRLDRGVRRTSPDLVALVEALALTRPRPSIATIHRRLVERCAGRDADAPSYSTVQNIVRALDPGMVTLALDGPASYRDKHELLLRRRADQPNAVWQADHTMLDILIVGPDGRPARPWLTVILDDYSRAVCGYLVFLGAPSAANTALALRQAIWHKVQPDWPICGIPNVLYVDHGSDFTSHRLSATAGSLHLRIVHSAVGRPQGRGKIERFFGTVNTELLTGLPGHLTTKTPAPSPVLDLAGLDAAVVAFIGRYNTRIHRETKQSPVDAWIAGGWLARMPDSLEQLDGFLLTVPASRIVQRDGIRFQGLRSTSPTLAPFVGATVTIRYDPRDITEIRVFHRNIYLCTAVNPEHQSETVSLKQIQAARNAHRRALRGQIQERIAVVEHPPAQEPPSEPVSQQRRRRLRTYEEDQ
Sequence
>complement(537651..538298)
CurtobacteriumspZW137MSPLPLLVEFRYVLFMGHLLGYARVSTTDQDASLQVDALNAAGCFRVFVDTMSGSLEHRPELDKLLDQIRPGDTLVVWRLDRLGRSIRHLIDQLHGLADRGVGFRSLQETIDTTSPGGRLVFHVFAALAEFERDLIKERTNAGLAAARARGRTGGRPPRLSSDQVRTARRLYEQQDMTVAQIGDVLGVSRTTIYRTLAKHTEVMTARRTKPSPSM
Sequence
>538831..539526
CurtobacteriumspZW137MRWPLAIAAGAFLAAYAVEVLADHHGRSAFVSDVVINVTWAMFVVDYLVTLLLARHRGRWFVHHLVDLAALALPFLRPLRLLRLAQLFRVLQRSTGAAVRGRVIVYVIVTTALLVFVSALAILDVERHADGATIVSFGDALWWALVTITTVGYGDLTPVTETGRLIAAGVMISGIALLGVVTATIASWIIDQVGRRDDEAQIATRRELRELSAEIRSLPEELQQRRPPSGE
Sequence
>complement(539561..540922)
CurtobacteriumspZW137MIQITMPRLSDTMEEGAISAWHKHPGDIVEVGDILVEIETDKATMEYEAYDAGTLTEILVPEGENVAIGTPIATLDDGSGPALSPADGQRADSPADEHTSPTTPTFVPAPAFDTSSEHDHPARTSEDPPVEPQQRERSEGIPAPAEHIAFASPLARKLAREHHVDIATVHGSGPGGRLVRADVEAIIDADQSAAALEHDVPSTATLPVPGSASTHHQQDTDADVTTPMTGTRKVIARRLTESARTIPHFTVTAVADADALIDLRTMVNASRIRQDTAKVSLNDFIVKAAALALAAHPAINVSYQDDPDPAITQHTAVNIGIAMAAPAGLVVPVMTHADTRSVSSISAASRSFSARAADRKLQPADMTGGTFTVSNLGMFGAESFTAIINPPESAILAVGAATADAAVHDGNLVVRHRIRLTLSADHRVIDGALAAQYLQTLTSLLEDPISLLL
Sequence
>complement(540919..541935)
CurtobacteriumspZW137MTVMSYRDALRMTLREELLADENVLLLGEEIGIFEGSYKITQGLLEEFGPRRVRDTPIAEEGFTGAAIGAAMLGLRPVVEIMTINFSLLALDQIVNHAAKIYGMFGGQSRVPLVIRTPGGGGQQLGATHSQNVELYYAFVPGMKVVAPSTPADARTLLRASIRDDDPVLFLENLALYNIKDDVPDDVDDVEIGRAAVSRVGSDVTLIGYSRTAHLARQAATRLAEDGIDAEVIDLRSLRPLDRETVIRSVRKTHAAVVLEDDWLTYGIGAELAASISDGAFDDLDAPVRRVAMAEVPLPYAKPLETVALPALEDAITAVHETLHAVGWRASDRNGTSR
Sequence
>complement(541932..543056)
CurtobacteriumspZW137MGNCAKEQQTVMTSRTTPTQEPDNIPEEQQAELLSLMLRVRRFEERAARAYTQALIGGYCHLNLGEEAAVAGITTAMQPMDYLFTNYREHGYAIGRGIDPNRVMAELYGRVDGVSSGWGGSMHMFDLTARLLGGYGIVGGQIPLATGAALAIDYRGGDEVVVCTLGDGTTNIGAFHESLNLAALWHLPIVYVIINNQLGMGTTVEHASAEPKLYKRAASYRMAAERADGLHPVTVQQAMTRALASARRNEPFLLELTTERLKGHSVVDPAKYRTDSETEALREHDPVAAYRAALIAAEIIDDDAAAAMDAAAIAAATAAADYAANSAHPDPSTLFDYTYATPVPNDTRRLPAQPLFPPPTDTNYPATTSQEQTR
Sequence
>544081..544094
GCCGGCGGCGCCGA
Curtobacterium sp
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 926185 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: EDF55_1556 (Region 1)
Locus: EDF55_1556ORF Start: 535439
ORF Stop: 536251
Strand: Backward
Protein Sequence: MPNQFVVTKEHRRFTEFADAVRKQQTIGICFGAAGVGKTLSARRYAHWDLIGPFIKQWGPRSESDLKVYAAAHRARTVFYTPQVAASLRSLRDQLDYDLRHTNILVEEHLRLIGHTVSYRHGQPPSQLELVIVDEAERLTATAIEWLRDQYDRTGTALILIGMPGIEKQFAHYPQLYSRLGFAHQYRPLGHDELLFVLERQWRKLGHTLDPDDFTDAQAVAAIERITRGNFRLLERLLPQIQRVLRINELDVITNDVIEAARSTLVIGVS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EDF55_1556, DNA transposition protein B, phage(gi971741505), PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766
Homolog/Ortholog E-Value: 1.56e-10
Locus 2: attL (Region 1)
Locus: attLORF Start: 536147
ORF Stop: 536160
Strand: Forward
Protein Sequence: GCCGGCGGCGCCGA
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 3: EDF55_1557 (Region 1)
Locus: EDF55_1557ORF Start: 536251
ORF Stop: 537645
Strand: Backward
Protein Sequence: MDADERWRILRLHVDDAIPLAELVRTTGVPRRTLTRWLARYRTGGYDALSDSVRLDRGVRRTSPDLVALVEALALTRPRPSIATIHRRLVERCAGRDADAPSYSTVQNIVRALDPGMVTLALDGPASYRDKHELLLRRRADQPNAVWQADHTMLDILIVGPDGRPARPWLTVILDDYSRAVCGYLVFLGAPSAANTALALRQAIWHKVQPDWPICGIPNVLYVDHGSDFTSHRLSATAGSLHLRIVHSAVGRPQGRGKIERFFGTVNTELLTGLPGHLTTKTPAPSPVLDLAGLDAAVVAFIGRYNTRIHRETKQSPVDAWIAGGWLARMPDSLEQLDGFLLTVPASRIVQRDGIRFQGLRSTSPTLAPFVGATVTIRYDPRDITEIRVFHRNIYLCTAVNPEHQSETVSLKQIQAARNAHRRALRGQIQERIAVVEHPPAQEPPSEPVSQQRRRRLRTYEEDQ
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: EDF55_1557, transposase, putative, phage(gi15807743), PROPHAGE_Deinoc_R1
Homolog/Ortholog E-Value: 1.99e-23
Locus 4: EDF55_1558 (Region 1)
Locus: EDF55_1558ORF Start: 537651
ORF Stop: 538298
Strand: Backward
Protein Sequence: MSPLPLLVEFRYVLFMGHLLGYARVSTTDQDASLQVDALNAAGCFRVFVDTMSGSLEHRPELDKLLDQIRPGDTLVVWRLDRLGRSIRHLIDQLHGLADRGVGFRSLQETIDTTSPGGRLVFHVFAALAEFERDLIKERTNAGLAAARARGRTGGRPPRLSSDQVRTARRLYEQQDMTVAQIGDVLGVSRTTIYRTLAKHTEVMTARRTKPSPSM
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EDF55_1558, DNA-invertase, phage(gi169936026), PHAGE_Salmon_Fels_2_NC_010463
Homolog/Ortholog E-Value: 5.90e-56
Locus 5: EDF55_1559 (Region 1)
Locus: EDF55_1559ORF Start: 538831
ORF Stop: 539526
Strand: Forward
Protein Sequence: MRWPLAIAAGAFLAAYAVEVLADHHGRSAFVSDVVINVTWAMFVVDYLVTLLLARHRGRWFVHHLVDLAALALPFLRPLRLLRLAQLFRVLQRSTGAAVRGRVIVYVIVTTALLVFVSALAILDVERHADGATIVSFGDALWWALVTITTVGYGDLTPVTETGRLIAAGVMISGIALLGVVTATIASWIIDQVGRRDDEAQIATRRELRELSAEIRSLPEELQQRRPPSGE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EDF55_1559, hypothetical protein, phage(gi100027), PHAGE_Lactob_PLE2_NC_031036
Homolog/Ortholog E-Value: 2.91e-19
Locus 6: EDF55_1560 (Region 1)
Locus: EDF55_1560ORF Start: 539561
ORF Stop: 540922
Strand: Backward
Protein Sequence: MIQITMPRLSDTMEEGAISAWHKHPGDIVEVGDILVEIETDKATMEYEAYDAGTLTEILVPEGENVAIGTPIATLDDGSGPALSPADGQRADSPADEHTSPTTPTFVPAPAFDTSSEHDHPARTSEDPPVEPQQRERSEGIPAPAEHIAFASPLARKLAREHHVDIATVHGSGPGGRLVRADVEAIIDADQSAAALEHDVPSTATLPVPGSASTHHQQDTDADVTTPMTGTRKVIARRLTESARTIPHFTVTAVADADALIDLRTMVNASRIRQDTAKVSLNDFIVKAAALALAAHPAINVSYQDDPDPAITQHTAVNIGIAMAAPAGLVVPVMTHADTRSVSSISAASRSFSARAADRKLQPADMTGGTFTVSNLGMFGAESFTAIINPPESAILAVGAATADAAVHDGNLVVRHRIRLTLSADHRVIDGALAAQYLQTLTSLLEDPISLLL
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: EDF55_1560, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
Homolog/Ortholog E-Value: N/A
Locus 7: EDF55_1561 (Region 1)
Locus: EDF55_1561ORF Start: 540919
ORF Stop: 541935
Strand: Backward
Protein Sequence: MTVMSYRDALRMTLREELLADENVLLLGEEIGIFEGSYKITQGLLEEFGPRRVRDTPIAEEGFTGAAIGAAMLGLRPVVEIMTINFSLLALDQIVNHAAKIYGMFGGQSRVPLVIRTPGGGGQQLGATHSQNVELYYAFVPGMKVVAPSTPADARTLLRASIRDDDPVLFLENLALYNIKDDVPDDVDDVEIGRAAVSRVGSDVTLIGYSRTAHLARQAATRLAEDGIDAEVIDLRSLRPLDRETVIRSVRKTHAAVVLEDDWLTYGIGAELAASISDGAFDDLDAPVRRVAMAEVPLPYAKPLETVALPALEDAITAVHETLHAVGWRASDRNGTSR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EDF55_1561, transketolase central region-containing protein, phage(gi326781943), PHAGE_Synech_S_SM2_NC_015279
Homolog/Ortholog E-Value: 1.89e-12
Locus 8: EDF55_1562 (Region 1)
Locus: EDF55_1562ORF Start: 541932
ORF Stop: 543056
Strand: Backward
Protein Sequence: MGNCAKEQQTVMTSRTTPTQEPDNIPEEQQAELLSLMLRVRRFEERAARAYTQALIGGYCHLNLGEEAAVAGITTAMQPMDYLFTNYREHGYAIGRGIDPNRVMAELYGRVDGVSSGWGGSMHMFDLTARLLGGYGIVGGQIPLATGAALAIDYRGGDEVVVCTLGDGTTNIGAFHESLNLAALWHLPIVYVIINNQLGMGTTVEHASAEPKLYKRAASYRMAAERADGLHPVTVQQAMTRALASARRNEPFLLELTTERLKGHSVVDPAKYRTDSETEALREHDPVAAYRAALIAAEIIDDDAAAAMDAAAIAAATAAADYAANSAHPDPSTLFDYTYATPVPNDTRRLPAQPLFPPPTDTNYPATTSQEQTR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EDF55_1562, transketolase central region-containing protein, phage(gi326781943), PHAGE_Synech_S_SM2_NC_015279
Homolog/Ortholog E-Value: 1.26e-11
Locus 9: attR (Region 1)
Locus: attRORF Start: 544081
ORF Stop: 544094
Strand: Forward
Protein Sequence: GCCGGCGGCGCCGA
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download