Submission Results
Sequence Name: Not Available
GenBank Accession Number: SAJE01000001.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: SAJE01000001.1.PHASTER.zip
gi|00000000|ref|SAJE01000001.1| Mesorhizobium sp. isolate N.Ca.ET.107.01.1 689851, gc%: 63.60%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8Kb | incomplete | 40 | 8 | 646444-654488 info_outline | PHAGE_Bacill_Bobb_NC_024792(1) | 64.80% | Show info_outline |
Region DNA
>1 646444-654488 TTAGGCGCAGACGCGGTTGCGGCCCTGCTTCTTCGCCTCATAGAGCTGACGGTCGGCGCG ACGGTAGAAATCCTCCGCGCTCTCTTTGTGGTCCCACACGGCAAGGCCGACGCTGGTGGT GACCTTCAGCCGCACATTGCCCGACAGGATCGACAGGTTGGCGATCGCCTTGCGGATGCG TTCGGCGAACCGGGCAAGCAGCTCGACATCCATGTTGGGAGTGACGACGGCAAACTCCTC GCCGCCCAGCCGCGCCACCACGTCGTGATAGCGCGTCATGCCCCGCAGGCAGGTGGCTAC GGCCCGCAGCACCTCGTCGCCGACATCATGACCATGTGTGTCGTTGACCTGTTTGAAGTG ATCGAGATCGAGGATCATCAGCCCGACCGGCCTGTCGATACGACGAAATTCATGGAGATA TTCACGCAGCGCATCGTCGAAATAGCGGCGGTTCTGCATGCCGGTCAGACCGTCGGTGAG CGCCGCCTGCTCGAGCGTCTGCGAACGGGCGCTGAGCGAGACCGTCATGGCCCTGAGCTT GCCCTCTTCCCGCACCTGGCCGCGGATCAGCGGGTAGATGAAGAAAGTGCCGAAGAACAG CGCGGTCGCCAGCAGCGCGCCAGTGACGAAAAGCAATTTGTTCAGATAGACGATTTTGTC GACACGTGATGCGGCATCGAGGTCCGAGGCGATGTCCTGTAACTGACCAAAGGCATGGAA GGTCACCAGGCCAGCGGCCAGGATCACGAAAATAAAGACGAAAAAAGCGGATTCCGCCTT GTGGAAACGCATCTACTCCCCGCGCCACTGTAACCCCTGAGCTTATGCCATAGCGGACCT TACGGACCGTTAACCCGGACAACCCTGGAGAGAATTAGAACAAAGGATTTTAAGGCGCTG ATTGAAAAAGGCTTTTTGTCAGTCGCGAACTGCCGCTTGATCGTGCGGTCGCAGCCTGCG CCACTCCGCGCCCAGTTGGTGCCTGAACCAGGTCGATTGGCGCTTGGCATACTGCCGAGT CGCGATCTTGGCTCGCTCGATCGCCTCGGGAAAGCCGCACTGTCCGGCCATCGCCGCCTG CAGCTCGCGCACCCCGATCGCCTTCATCGCCGGCAGGTCCGGGTCGAGGCCAAGCGCCGT AAGCTGCCGCACTTCGTCCAGCGCGCCCTTGTCGAGCATCTGGTCGAAACGCGCCTCGAT GCGCCGGACCAGTTGCGCCCGGTCCGGCTCGATCACCAGGAAACGAGCGCTGTCGCGGTC GATCAGCGGACGGCCGCGCGCCGCCTGCCACTCCAGGAGGGAACGTCCCGAAGCATCGAG CACTTCGAGCGCCCGCACGATACGCTGGCCGTCCGTCGGCCTGAGTTGCATGGCCATGGT TGAATCCTCATGCATCAGCAGGCGATGCAGTCTTTCGGCTCCTTGCTCCTTGAGCTCGTA GCGCCAGCGCTCACGCACCGCCGGTGGAATGTCCGGCATATCCGAGATGCCTTCAGCCAG CGCGCGGAAATAGAGCCCGGTGCCGCCGACGAAAACAACCGTACGGCCCGACAGGACGCC ATCGTCAATCAGCTTCGTCACGTCGCGCAGCCAGGCGCCGGTGGAATAGGCCGTGGAGGG ATGCACATGGCCGTAGAGGAAATGCGGCACGCGTGCCGTTTCGGCGGCGGTCGGTCGTGC CGTCAAGACATCGAGCACCGAATAGCCTTGCATGGAATCGGTGTTGACGATGACCCCGCC ACCACGCTCGGCAAGATCGAGCGCCAGCGCCGACTTGCCGCTGGCTGTCGGCCCGGCTAT CAGGATCGCGTTCTTGACGCGGCCTTCGCCCGCCTGCCTGCCGGAATGTTCAATGCCGCT GATCGCCACTCTAGTGTCCCGTCCAGAAGCCCGCGCCGTGCCGGCCTCGCTTGCGAATAT GGCCTTGCAGACTGCCGGCGCAAGCGCTATCCGTTGGCTGGCTGAAGACGTCGCCTGCGA TCTCGTTTTGCCGCAGACGCCGGATATCGGCGAAATGACCGCCAATCTGCGGGCCGCACT GGCATCCGAGCCGGTCGATATCGTCGTCCAGCCCGCCGAAGGCAGGCGCAAGAAGATCCT GCTCGCCGACATGGATTCGACGATGATCGATCAGGAGTGCATCGACGAGCTCGCCGACGA GATTGGCGTCAAGGACCATGTAGCGGCGATCACCGCGCGCTCGATGAATGGCGAAATCGC CTTCGAGCCGGCCTTGCGCGAGCGCGTCGCCTTGCTGAAGGGCCTCGACACCGCGGTGGT CGACCGCATCATCACCAACCGGCTGACGCTCGCCGCCGGCGGCCGCGCCTTGGTGCAGAC AATGCGTGCCAACGGCGCCTGGACGGCGCTGGTCTCCGGCGGCTTCGACGTCTTCACCAG CCGTATTGCCGAGATGCTGGGGTTCCAGGAAAACCGGGCCAACCGCCTGGTCGAGGAAGA CGGCAGACTCGCCGGCATGGTGACCGAGCCCATCCTCGGCCGCGCCGCGAAAGCCGAAGC GCTGCTGGACATTGCCGCGAGGCTCGCGCTGACGACACAGGATGCCATCGCGGTCGGTGA CGGCGCCAACGATCTCGATATGATCCGTCTTGCCGGCACCGGGGTCGCGCTGCATGCCAA GCCGGCGGTGGCCGAGCAGGCACGCATCCGCATCGATCATAGCGACCTGACCGCGCTGCT CTATCTACAGGGCTACCGCCGGGATGAGTTTGTGGAATGAAGCCGATCCGCATCGAGCGC CTGATCCTGCGCAACTGGGAGGATCGCGACCGCGCGCTTTTCCACCGCATCAACTCCGAT GAGCGCGTGATGGAATTCTTCCCGTTCCGCCGCGACCGCGCCGCGGCTGACGCCAAGATG GACGAAGTCCGCGCCTGGATCGATGAGGATGGATATGGCTTCGCCGCGGCCGAGATTGCC GCGACCGGCGAATGCGTCGGCTTCGTCGGCTTGTCCGGAACGGAAGACATCGACGTGCTG GCGCCCGGCACGATTGAGATCGGCTGGCGGCTGGCGCCCGAATTCTGGGGCAAGGGCTAT GTCACCGAGGCGGCGGAAGCCTGGCTCGCCTTCGGTTTCGAAACGCTTGGCGTGGACGAG ATCGTGTCATTCGCGGTCGCGGACAACCATCGTTCGATCGCCGTCATGAAGCGGCTCGGC ATGCAAGCCGATCCCGGTGCCGACTTCGATCACCCCAGCGTCCCAGACAGCCACCCGCAT CTCAAGCGTCATGTCATGTACAGGCTGTCGCGCGAGGCCTGGCAGGCACGAAAAAGGGCG GCTCGCTAGCCGCCCTATTCATTGAAACATCAATCGCTTGCTGAACGATCCGGACTCAAT CCATCCGGATCGTCACGAAACGCAGTTCCCCGGTCTTCGAGGCCAGCATCAGGAGCGCGT TCTTGCGGCCCTGCTCCTTAAGCGCTCCGATCCGGTCCATCACGTCCTTCGGCGTGCCGA CCGATTCCTGCGCGATCTCGGTGATCACCTCGCCGGGCTGGATGCCGCGCTCCGCCGCGG GCGAATCCTTGGCGACATCGGTGACGACCACGCCGGACACGTCGGCGGCGATGCCGAATT TCTGCCGCGTCTGGTCGTTGAGCTCGCCGACCGTCATGCCGAGCACGGAGGCCGTCGACA CCGGAGGCGTTGCCTTATCGCCACTGCCCTGATCGGTGCTGCCGTTCTCGCCGCTGGCCA GCTTCTCCCCGTCCTCGAGCCTGCCGAGCGTCACCTTGACGGTCTGCTCGACGCCCTTGC GCACGATGACGACATCTACTGCCTTGCCGACCGGGCTTTCGGCCACGACGCGCGGCAGGT CGCGCATTTCATGGATATCCTTGCCGTCGAACTTGATGATGACGTCGCCGGCCTGGACCG TGCCATTGTCGACCGGCCCGCCCTTGATGACGCCGGCCACCAGCGCACCCTTGGCGGTCG CCATGCCGAGGCTTTCGGCGATGTCGTCCGTCACCGGCTGGATGCGAACGCCGAGCCAGC CGCGCCGCGTCTCGCCATACTGGCGAAGCTGGTCGACGACGCCGGCGGCAAGCTGCGAGG GGATGGAGAAACCGATGCCGATGGAGCCGCCCGACGGCGAGATGATCGCCGTGTTGATGC CGATGACCTCGCCGGCGGCGTTGAACAGCGGACCGCCGGAATTGCCGCGGTTGATGGCGG CGTCGGTCTGGATGAAATCGTCATAGGGACCGGAATTGATGTCGCGGTTGCGCGCCGAGA CGATTCCGACCGTCACCGTGCCGCCCAAGCCGAACGGATTGCCGATCGCCATCACCCAGT CGCCGACGCGCATCTTGATGGAATCGCCGAATTTCACCGCCGTCAGCTTGTGGCCCTTGG GGTCGACCTTCAGCACCGCGACGTCGGTCTTGGTGTCGGTGCCGACAAGCGTCGCCTTCA GCGTGATGCCGTCGGAGAAATTCACCTCGATATCGTCGGCATCGGCGATGACATGGTTGT TGGTCACCACGATGCCCTGCTCGGCGTCGATGACGAAGCCGGAGCCGAGCGACTGCACTT TCTGCCCGCCGCCGCCCTTGTCGCCGCCGCGGTTCTTGAAGAAATCGTCGAAGAAATCCT GGAACGGCGAGCCCTCGGGCAGTTGCGGCATCGGCACCGCGCCCGGTCCTTCCGTGCCCT TCACCGTCTGCGAGGTCGAGATGTTGACCACCGCGCCGAGCAGGCGCTCGGCGAGATCGG CGACCGAAGGCGGTCCGTCGGAGGCAACCGTCGGCGTGACGAAGGATGGAACGGCAACAA TGCCGACCGCGAATGCGGTGGCGCCGGCGAAGACCATACGCCGCGCCGCGCGCAACAGGG TGTCGGATATCATCATGGCCTCCCGGTTGTTCTGAAAAGGAAGGGCGCATCCGCAAAGGC GCCCGTCCGGTTCATGTTGGCAAAAAATACGGCACGTTTGCGGCTATAGCTATCGGCGCA AGATAAATCGTCAATCGCTTGGGCACCAAGGAATATCATAAGCCGCGGACGAGCCAGACG ATGCCGACGCCGACGGCGATCGCCACCAGCCCGCCGACCCGCAGCACATTTTCCGGCACC GACAGCACCTCGGCCGCGAGTTTCCGGGCCAAAGCCGGAAACCCGCCATAGACCAGCCCC TCGATCACCAGGACCAGGCCGATTGCCGCCAGAAAATCCTGCACCGCCCGCTACTGGGCG GTGCCGGGTTGGGTCGCAGGCGCGGCAGGTGCCGTCGCAGGCGCGGCCGTTGGCGCGGAA GGCGCCGGGCCGGGCTTGCTGCCCGGATCGCGGAAGTAGCGGAAGAACTCGGACTCGGGC GAGAGCACCATCGTCGTTCCGGTGTTGTCCAGCGCCGTGCCGTAGGCGTTCATCGAGCGA TAGAAGTCGAAGAAGGCGGGATCGCGCTTATAGGCATCCGCGAAGGTCGCGCTGCGCTGC GCCTCGCCCTCACCACGCAGGATCTCCGATTCCTTCTGCGCCTCGGCGACGATCTCGACG ACCTCGCGGTCGGCCCGCGCCCTGATGCGCTGCGCCGCCTCGTTGCCGCGCGCCCTCAGG CGCTCGGCTTCCGCCAGGCGCTCGGCCTTCATGCGGTCATAGGTCTGCTGCGAGACCTCC GCCGTCAGGTCGGTCCGGCGGATGCGCACATCCTCGATATCGAGGCCGAGCGACGTCGCG TCGGGGCGCAGCTGATCGCGCACCTCGCGCATCATGTTGCCGCGCTCCTCGGAGAGCGCG GCCTCGAAATCGCGCAAGCCGTAGACACGGCGTAGCGCCGCATCGAGACGCGTCCTCAGC CGGGCTTCGGCCAGTTCCACCTGACCGGACACAGCCGCGCGGAACGTGCGCGGATCCGAG ATTCGGTAGGCGATGAAGGCATCGACCTCGTAGAACTTGCCACCCGAGACCTGGACGCGG ATGTTGTCGAGGTCGAAGCGCATCACGCGCTTCTCGACCATCTGCACGCTGTCGGCGTCG AAAAAGGCGAACGGCGCCTTGAAGTAGATGCCGGGCTCGTTCTTGACGTCGATGATCTCG CCGAACCGCAGCACGATCGCCTGCTGGCCGGCATTGACCACGAACACCGAGGAATAGAGC AGGAACAGGAGGATGGCCGCGATGACGGCGATGATGGGGAGACGGTTGGCCATCACTGGT TACCTCCCGTCGCGGCGCCGAGGGGCGACGGCGGCGCTTTCGGCTGCAAAGCCGGCAGCG GCAAATAAGGCAGCACGCCCTGACCGTTGCCCGGCTCGACGACGACCTTGTTCGAGTCCT TCAGGATCCTCTCCATGGTTTCGAGATAAAGACGCTTGCGCGTGACGTCGGGCGCCTTGG CGTATTCATTGTAGACAGAGATGAAGCGCTGCGCCTCGCCTTCCGCTTCCTGAACGACCC GGTTCTTGTAGGCGGCCGCGTCTTCACGGATCTGCGCCGCTTGGCCGCGCGCCTGTCCGA GCTTCTGGTTGGAATACTGGTTGGCCTGCTCGACGAACTTGTCCTCGTCCTGCTCGGCGC GTTGCACTTCATCGAAGGCGTCGGCGACCTCGCGCGGCGGCGCCGCATCCTCGATCGAGA CCGCGTTCACCTGGAGGCCGGTCTTGTAGCCGTCGAGCGTGCCCTGGATGATCTCGCGCA CCGCGGTTGCGATGCCCTGGCGATCGTCGCGGAAAATATCCTGCGCCGGGCGCCGGCCGA CAACTTCGCGCATCGCGCTCTCGGCGACCTGCGCCAGCATGCCGTCGGGGTCGGAGACGT CGAACAGGTAGGCTTTGGGATCCGAGACCTGATAGGCGACCGAGAACTGAACGTTGACGA TGTTCTGGTCGCCGGAGAGCATCAGCCCGGAGCCGCTGCTCGCGCCACCACCGATGCTGA CCAGTTGCTCGGAGATCTTGGCGGTTTCGACCGTTTCGATCGGCCACCAGTGGAAATGCA GGCCAGGCTGCGAGAGTTCAGACTTCGGCTGGCCGAAACGCAACTCGACGGCGACCTCGT CGGGCTGCACGGTATAGATCGCCTTGAAGGCCCACAGCACGATGAGCGCCAGAGCGATGA GCCCGAGCACCGCCGGGCTGGCGCCGCCGCCGCCCGGAAGCGCGCGCCGCAGCCTGTCCT GGCCACGGCGGATGATGTCCTCGAGATCGGGCGGGGAACCCTGCGGTCCGCTTGGCCCTT TCGGCCCCTGCCCCCAGGGTCCCTGATTGCCGCCGCCGCCCCATGGGCCGCCGCCGCCAC TCTTGTCGTTCCAGGGCATGAATGTCCTTTCGCTTCGGTTCCCTCAGGCCTTGCGGCGCA ATCCTAACGCATGACCGGGAAAACCCATATCGGTTTTCGAAAAGGAATCGTGCGCCAAAA TCAAGGTATTACGGCGGCCTCTTGTGCGTCCGGTTGGACGCGGGCCGCTGCAACACCGTT CTTCTATAGGGACGCGTCGATCCGCTTTCAACGCGATGGGCCATCGTCCCCATGCGATTT GGATCGGTCGCGACCCTTTGTCGTCATCAACGATCGTCGCGTCGGCGCTCGTAAACCGTA TAACGCGTGGCGTGGCTGTCTTTCTCGCCGGCGGGAAAATCCTCGGCGCTGACGACTTGC CAGATGCTCGGGTCGATCGGCGGAAAATGCGCGTCGCCATCGACGCTGGCCAGCACATGC GTCACGTGCAGCCGGTCGGCAACCGGCAAGGCCTGGGCATAGATCTCGCCGCCACCGACC ACGCAGATCTCCTCCGCTCCCGCCATGCAGCGGCCGCGCACCCTGGCCAGCGCGATCGCG TCATCCAGCGAGTGGGCCACTTCGATGCCTTCGGCGCGCCAGGCCTTGTCGCGCGTCACC ACGATGTTGAGCCGGCCGGGCAGCGGCCGGCCGATGCCTTCATAGGTCTTGCGGCCCATG ATGATCGGCTTGCCCATCGTATCGGCCTTGAAGCGCTTGAGATCGGTGGAAAGCCGCCAC GGCAGGCCGCCCTCGCGGCCGATCACGCCGTTTTCGGCGATGGCGACATAGATCGCGATA TCCAT
Region Details
| Region | 1 |
| Region Length | 8Kb |
| Completeness(score) | incomplete(40) |
| Specific Keyword | protease |
| Region Position | 646444-654488 |
| # tRNA | 1 |
| # Total Proteins | 8 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 75% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Bacill_Bobb_NC_024792(1) PHAGE_Plankt_PaV_LD_NC_016564(1) PHAGE_Bacill_BCD7_NC_019515(1) PHAGE_Halovi_HHTV_2_NC_021340(1) PHAGE_Ralsto_RSF1_NC_028899(1) PHAGE_Bacill_SP_15_NC_031245(1) PHAGE_Erwini_vB_EamM_ChrisDB_NC_031126(1) PHAGE_Bacill_G_NC_023719(1) PHAGE_Pseudo_YuA_NC_010116(1) PHAGE_Bacill_phiAGATE_NC_020081(1) PHAGE_Pseudo_MP1412_NC_018282(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 12.5% |
| GC % | 64.80% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|SAJE01000001.1| Mesorhizobium sp. isolate N.Ca.ET.107.01.1 689851, gc%: 63.60%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 9 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(646444..647235) | PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; EOQ31_03065; phage(gi162135126) | 2.15e-06 | Showinfo_outline |
| 2 | complement(647362..648306) | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA; EOQ31_03070 | 0.0 | Showinfo_outline |
| 3 | 648296..649183 | phosphoserine phosphatase SerB; EOQ31_03075 | 0.0 | Showinfo_outline |
| 4 | 649180..649752 | PHAGE_Plankt_PaV_LD_NC_016564: putative acetyltransferase; EOQ31_03080; phage(gi371496157) | 2.21e-14 | Showinfo_outline |
| 5 | complement(649799..651316) | PROPHAGE_Shewan_MR-1: serine protease; EOQ31_03085; phage(gi24375430) | 6.92e-82 | Showinfo_outline |
| 6 | complement(651459..651647) | DUF2065 family protein; EOQ31_03090 | 0.0 | Showinfo_outline |
| 7 | complement(651654..652616) | PROPHAGE_Escher_Sakai: FtsH protease regulator HflC; EOQ31_03095; phage(gi15834405) | 8.89e-53 | Showinfo_outline |
| 8 | complement(652616..653722) | PROPHAGE_Escher_Sakai: FtsH protease regulator HflK; EOQ31_03100; phage(gi15834404) | 1.60e-49 | Showinfo_outline |
| 9 | complement(653970..654488) | PHAGE_Bacill_BCD7_NC_019515: dihydrofolate reductase; EOQ31_03105; phage(gi422936066) | 8.32e-34 | Showinfo_outline |
Sequence
>complement(646444..647235)
MesorhizobiumspMRFHKAESAFFVFIFVILAAGLVTFHAFGQLQDIASDLDAASRVDKIVYLNKLLFVTGALLATALFFGTFFIYPLIRGQVREEGKLRAMTVSLSARSQTLEQAALTDGLTGMQNRRYFDDALREYLHEFRRIDRPVGLMILDLDHFKQVNDTHGHDVGDEVLRAVATCLRGMTRYHDVVARLGGEEFAVVTPNMDVELLARFAERIRKAIANLSILSGNVRLKVTTSVGLAVWDHKESAEDFYRRADRQLYEAKKQGRNRVCA
Sequence
>complement(647362..648306)
MesorhizobiumspMSGIEHSGRQAGEGRVKNAILIAGPTASGKSALALDLAERGGGVIVNTDSMQGYSVLDVLTARPTAAETARVPHFLYGHVHPSTAYSTGAWLRDVTKLIDDGVLSGRTVVFVGGTGLYFRALAEGISDMPDIPPAVRERWRYELKEQGAERLHRLLMHEDSTMAMQLRPTDGQRIVRALEVLDASGRSLLEWQAARGRPLIDRDSARFLVIEPDRAQLVRRIEARFDQMLDKGALDEVRQLTALGLDPDLPAMKAIGVRELQAAMAGQCGFPEAIERAKIATRQYAKRQSTWFRHQLGAEWRRLRPHDQAAVRD
Sequence
>648296..649183
MesorhizobiumspMPLIATLVSRPEARAVPASLANMALQTAGASAIRWLAEDVACDLVLPQTPDIGEMTANLRAALASEPVDIVVQPAEGRRKKILLADMDSTMIDQECIDELADEIGVKDHVAAITARSMNGEIAFEPALRERVALLKGLDTAVVDRIITNRLTLAAGGRALVQTMRANGAWTALVSGGFDVFTSRIAEMLGFQENRANRLVEEDGRLAGMVTEPILGRAAKAEALLDIAARLALTTQDAIAVGDGANDLDMIRLAGTGVALHAKPAVAEQARIRIDHSDLTALLYLQGYRRDEFVE
Sequence
>649180..649752
MesorhizobiumspMKPIRIERLILRNWEDRDRALFHRINSDERVMEFFPFRRDRAAADAKMDEVRAWIDEDGYGFAAAEIAATGECVGFVGLSGTEDIDVLAPGTIEIGWRLAPEFWGKGYVTEAAEAWLAFGFETLGVDEIVSFAVADNHRSIAVMKRLGMQADPGADFDHPSVPDSHPHLKRHVMYRLSREAWQARKRAAR
Sequence
>complement(649799..651316)
MesorhizobiumspMISDTLLRAARRMVFAGATAFAVGIVAVPSFVTPTVASDGPPSVADLAERLLGAVVNISTSQTVKGTEGPGAVPMPQLPEGSPFQDFFDDFFKNRGGDKGGGGQKVQSLGSGFVIDAEQGIVVTNNHVIADADDIEVNFSDGITLKATLVGTDTKTDVAVLKVDPKGHKLTAVKFGDSIKMRVGDWVMAIGNPFGLGGTVTVGIVSARNRDINSGPYDDFIQTDAAINRGNSGGPLFNAAGEVIGINTAIISPSGGSIGIGFSIPSQLAAGVVDQLRQYGETRRGWLGVRIQPVTDDIAESLGMATAKGALVAGVIKGGPVDNGTVQAGDVIIKFDGKDIHEMRDLPRVVAESPVGKAVDVVIVRKGVEQTVKVTLGRLEDGEKLASGENGSTDQGSGDKATPPVSTASVLGMTVGELNDQTRQKFGIAADVSGVVVTDVAKDSPAAERGIQPGEVITEIAQESVGTPKDVMDRIGALKEQGRKNALLMLASKTGELRFVTIRMD
Sequence
>complement(651459..651647)
MesorhizobiumspMQDFLAAIGLVLVIEGLVYGGFPALARKLAAEVLSVPENVLRVGGLVAIAVGVGIVWLVRGL
Sequence
>complement(651654..652616)
MesorhizobiumspMANRLPIIAVIAAILLFLLYSSVFVVNAGQQAIVLRFGEIIDVKNEPGIYFKAPFAFFDADSVQMVEKRVMRFDLDNIRVQVSGGKFYEVDAFIAYRISDPRTFRAAVSGQVELAEARLRTRLDAALRRVYGLRDFEAALSEERGNMMREVRDQLRPDATSLGLDIEDVRIRRTDLTAEVSQQTYDRMKAERLAEAERLRARGNEAAQRIRARADREVVEIVAEAQKESEILRGEGEAQRSATFADAYKRDPAFFDFYRSMNAYGTALDNTGTTMVLSPESEFFRYFRDPGSKPGPAPSAPTAAPATAPAAPATQPGTAQ
Sequence
>complement(652616..653722)
MesorhizobiumspMPWNDKSGGGGPWGGGGNQGPWGQGPKGPSGPQGSPPDLEDIIRRGQDRLRRALPGGGGASPAVLGLIALALIVLWAFKAIYTVQPDEVAVELRFGQPKSELSQPGLHFHWWPIETVETAKISEQLVSIGGGASSGSGLMLSGDQNIVNVQFSVAYQVSDPKAYLFDVSDPDGMLAQVAESAMREVVGRRPAQDIFRDDRQGIATAVREIIQGTLDGYKTGLQVNAVSIEDAAPPREVADAFDEVQRAEQDEDKFVEQANQYSNQKLGQARGQAAQIREDAAAYKNRVVQEAEGEAQRFISVYNEYAKAPDVTRKRLYLETMERILKDSNKVVVEPGNGQGVLPYLPLPALQPKAPPSPLGAATGGNQ
Sequence
>complement(653970..654488)
MesorhizobiumspMDIAIYVAIAENGVIGREGGLPWRLSTDLKRFKADTMGKPIIMGRKTYEGIGRPLPGRLNIVVTRDKAWRAEGIEVAHSLDDAIALARVRGRCMAGAEEICVVGGGEIYAQALPVADRLHVTHVLASVDGDAHFPPIDPSIWQVVSAEDFPAGEKDSHATRYTVYERRRDDR
Mesorhizobium sp. isolate N.Ca.ET.107.01
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 689851 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: EOQ31_03065 (Region 1)
Locus: EOQ31_03065ORF Start: 646444
ORF Stop: 647235
Strand: Backward
Protein Sequence: MRFHKAESAFFVFIFVILAAGLVTFHAFGQLQDIASDLDAASRVDKIVYLNKLLFVTGALLATALFFGTFFIYPLIRGQVREEGKLRAMTVSLSARSQTLEQAALTDGLTGMQNRRYFDDALREYLHEFRRIDRPVGLMILDLDHFKQVNDTHGHDVGDEVLRAVATCLRGMTRYHDVVARLGGEEFAVVTPNMDVELLARFAERIRKAIANLSILSGNVRLKVTTSVGLAVWDHKESAEDFYRRADRQLYEAKKQGRNRVCA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EOQ31_03065, hypothetical protein, phage(gi162135126), PHAGE_Pseudo_YuA_NC_010116
Homolog/Ortholog E-Value: 2.15e-06
Locus 2: EOQ31_03070 (Region 1)
Locus: EOQ31_03070ORF Start: 647362
ORF Stop: 648306
Strand: Backward
Protein Sequence: MSGIEHSGRQAGEGRVKNAILIAGPTASGKSALALDLAERGGGVIVNTDSMQGYSVLDVLTARPTAAETARVPHFLYGHVHPSTAYSTGAWLRDVTKLIDDGVLSGRTVVFVGGTGLYFRALAEGISDMPDIPPAVRERWRYELKEQGAERLHRLLMHEDSTMAMQLRPTDGQRIVRALEVLDASGRSLLEWQAARGRPLIDRDSARFLVIEPDRAQLVRRIEARFDQMLDKGALDEVRQLTALGLDPDLPAMKAIGVRELQAAMAGQCGFPEAIERAKIATRQYAKRQSTWFRHQLGAEWRRLRPHDQAAVRD
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: EOQ31_03070, tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
Homolog/Ortholog E-Value: N/A
Locus 3: EOQ31_03075 (Region 1)
Locus: EOQ31_03075ORF Start: 648296
ORF Stop: 649183
Strand: Forward
Protein Sequence: MPLIATLVSRPEARAVPASLANMALQTAGASAIRWLAEDVACDLVLPQTPDIGEMTANLRAALASEPVDIVVQPAEGRRKKILLADMDSTMIDQECIDELADEIGVKDHVAAITARSMNGEIAFEPALRERVALLKGLDTAVVDRIITNRLTLAAGGRALVQTMRANGAWTALVSGGFDVFTSRIAEMLGFQENRANRLVEEDGRLAGMVTEPILGRAAKAEALLDIAARLALTTQDAIAVGDGANDLDMIRLAGTGVALHAKPAVAEQARIRIDHSDLTALLYLQGYRRDEFVE
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: EOQ31_03075, phosphoserine phosphatase SerB
Homolog/Ortholog E-Value: N/A
Locus 4: EOQ31_03080 (Region 1)
Locus: EOQ31_03080ORF Start: 649180
ORF Stop: 649752
Strand: Forward
Protein Sequence: MKPIRIERLILRNWEDRDRALFHRINSDERVMEFFPFRRDRAAADAKMDEVRAWIDEDGYGFAAAEIAATGECVGFVGLSGTEDIDVLAPGTIEIGWRLAPEFWGKGYVTEAAEAWLAFGFETLGVDEIVSFAVADNHRSIAVMKRLGMQADPGADFDHPSVPDSHPHLKRHVMYRLSREAWQARKRAAR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EOQ31_03080, putative acetyltransferase, phage(gi371496157), PHAGE_Plankt_PaV_LD_NC_016564
Homolog/Ortholog E-Value: 2.21e-14
Locus 5: EOQ31_03085 (Region 1)
Locus: EOQ31_03085ORF Start: 649799
ORF Stop: 651316
Strand: Backward
Protein Sequence: MISDTLLRAARRMVFAGATAFAVGIVAVPSFVTPTVASDGPPSVADLAERLLGAVVNISTSQTVKGTEGPGAVPMPQLPEGSPFQDFFDDFFKNRGGDKGGGGQKVQSLGSGFVIDAEQGIVVTNNHVIADADDIEVNFSDGITLKATLVGTDTKTDVAVLKVDPKGHKLTAVKFGDSIKMRVGDWVMAIGNPFGLGGTVTVGIVSARNRDINSGPYDDFIQTDAAINRGNSGGPLFNAAGEVIGINTAIISPSGGSIGIGFSIPSQLAAGVVDQLRQYGETRRGWLGVRIQPVTDDIAESLGMATAKGALVAGVIKGGPVDNGTVQAGDVIIKFDGKDIHEMRDLPRVVAESPVGKAVDVVIVRKGVEQTVKVTLGRLEDGEKLASGENGSTDQGSGDKATPPVSTASVLGMTVGELNDQTRQKFGIAADVSGVVVTDVAKDSPAAERGIQPGEVITEIAQESVGTPKDVMDRIGALKEQGRKNALLMLASKTGELRFVTIRMD
Homolog/Ortholog Species: Protease
Homolog/Ortholog Protein: EOQ31_03085, serine protease, phage(gi24375430), PROPHAGE_Shewan_MR-1
Homolog/Ortholog E-Value: 6.92e-82
Locus 6: EOQ31_03090 (Region 1)
Locus: EOQ31_03090ORF Start: 651459
ORF Stop: 651647
Strand: Backward
Protein Sequence: MQDFLAAIGLVLVIEGLVYGGFPALARKLAAEVLSVPENVLRVGGLVAIAVGVGIVWLVRGL
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: EOQ31_03090, DUF2065 family protein
Homolog/Ortholog E-Value: N/A
Locus 7: EOQ31_03095 (Region 1)
Locus: EOQ31_03095ORF Start: 651654
ORF Stop: 652616
Strand: Backward
Protein Sequence: MANRLPIIAVIAAILLFLLYSSVFVVNAGQQAIVLRFGEIIDVKNEPGIYFKAPFAFFDADSVQMVEKRVMRFDLDNIRVQVSGGKFYEVDAFIAYRISDPRTFRAAVSGQVELAEARLRTRLDAALRRVYGLRDFEAALSEERGNMMREVRDQLRPDATSLGLDIEDVRIRRTDLTAEVSQQTYDRMKAERLAEAERLRARGNEAAQRIRARADREVVEIVAEAQKESEILRGEGEAQRSATFADAYKRDPAFFDFYRSMNAYGTALDNTGTTMVLSPESEFFRYFRDPGSKPGPAPSAPTAAPATAPAAPATQPGTAQ
Homolog/Ortholog Species: Protease
Homolog/Ortholog Protein: EOQ31_03095, FtsH protease regulator HflC, phage(gi15834405), PROPHAGE_Escher_Sakai
Homolog/Ortholog E-Value: 8.89e-53
Locus 8: EOQ31_03100 (Region 1)
Locus: EOQ31_03100ORF Start: 652616
ORF Stop: 653722
Strand: Backward
Protein Sequence: MPWNDKSGGGGPWGGGGNQGPWGQGPKGPSGPQGSPPDLEDIIRRGQDRLRRALPGGGGASPAVLGLIALALIVLWAFKAIYTVQPDEVAVELRFGQPKSELSQPGLHFHWWPIETVETAKISEQLVSIGGGASSGSGLMLSGDQNIVNVQFSVAYQVSDPKAYLFDVSDPDGMLAQVAESAMREVVGRRPAQDIFRDDRQGIATAVREIIQGTLDGYKTGLQVNAVSIEDAAPPREVADAFDEVQRAEQDEDKFVEQANQYSNQKLGQARGQAAQIREDAAAYKNRVVQEAEGEAQRFISVYNEYAKAPDVTRKRLYLETMERILKDSNKVVVEPGNGQGVLPYLPLPALQPKAPPSPLGAATGGNQ
Homolog/Ortholog Species: Protease
Homolog/Ortholog Protein: EOQ31_03100, FtsH protease regulator HflK, phage(gi15834404), PROPHAGE_Escher_Sakai
Homolog/Ortholog E-Value: 1.60e-49
Locus 9: EOQ31_03105 (Region 1)
Locus: EOQ31_03105ORF Start: 653970
ORF Stop: 654488
Strand: Backward
Protein Sequence: MDIAIYVAIAENGVIGREGGLPWRLSTDLKRFKADTMGKPIIMGRKTYEGIGRPLPGRLNIVVTRDKAWRAEGIEVAHSLDDAIALARVRGRCMAGAEEICVVGGGEIYAQALPVADRLHVTHVLASVDGDAHFPPIDPSIWQVVSAEDFPAGEKDSHATRYTVYERRRDDR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EOQ31_03105, dihydrofolate reductase, phage(gi422936066), PHAGE_Bacill_BCD7_NC_019515
Homolog/Ortholog E-Value: 8.32e-34
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download