Submission Results
Sequence Name: Not Available
GenBank Accession Number: SAQM01000010.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: SAQM01000010.1.PHASTER.zip
gi|00000000|ref|SAQM01000010.1| Mesorhizobium sp. isolate N.Ca.IN.013.03.1 217414, gc%: 60.89%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.7Kb | incomplete | 20 | 9 | 200643-209411 info_outline | PHAGE_Plankt_PaV_LD_NC_016564(1) | 60.09% | Show info_outline |
Region DNA
>1 200643-209411 GTGCATGAGAACCGTTCCACCCCCGCGAGGGTCTGGCTGTTTGCCGCACTGGCGCTTGCG GCAGCGGTCATCGTCATCATCGGGCCGGCGCTGTTCGACCGCTTTACGCTGAACGTGCTG ACCCGCTCGATGATTTACGCCATGTTGGCGGTGACCGTTGACATCCTGTGGGGCTACACC GGCATCCTGACCTTCGGGCAGGCTGCGTTCTTCGGCACCGGCGCCTATGCCAGTGCCATG GTGCTCAGCCATCTCGGCGCCTCCCCGGCGCTGATGGTCCTGGCGCTTGCACTGGCGATC ATCGTGCCGGTGTTGCTCGGTGCCTTCGTCGGCTGGCTGTCATTCGGCCACGGCTCGACT CCGCTCTATGCGACGGTGATTTCGCTCGTCGTGCCGATCGTTGTCACGCAGCTGGTGTTT TCGGGTGGCGTGTGGACCGGATCGAGCAGCGGGTTGGTCGGCTATTCCGGCCTGCCGCTC GGCTTGCCGGGCTATTTCCGGCTGACCGGCATCTGCCTCATCGTCACCGCCGTTGTCGCC CTGGTCTTCACCCGCTCGGATGCAGGCAAGCTGCTCGTCGCCATTCGCGACAATGAAGCG CGCTGCGCCTATCTTGGCCTCGATCCGCAGCGGTTGAAGATCGTGCTGACAACGATCCTC GCCGGCGTGGCCGGCATTGCCGGCTTCCTCTATGCCAACGCGTCGGGCGTGGTGGCACCT GAGAACACCGGCTTCGTCTTCGGCACCGAGATCGTCATCTGGACGGCGCTGGGCGGCCGC GGCACGATCATCGGGCCGGTGATCGGCGCGATCGGCATCGATTACCTAAGCGCCCAGCTT TCCGGCGACCTGCCCTTCCTGTGGAACCTGGTGGTCGGCGCGCTGTTCGTCGTGATGATC ATCCTGTTGCCGAACGGGCTGGCGCAACTGGCCAGGATGGTCCTGCCGCGCGGCAATGAG CAGGCCAGCCCATCGGGCAGCCCTACCCTCGCCGCCGAACCGGCCGGCAGCGGGTCGGAG GCCGGCAACCGCGTGCTCGCCGTCGGCGGCCTCGGCAAATCCTTCGGCAGCCTGCAGGTG CTGCAAGGGATCGACCTCGACGTTCACCCCGGTGAGCTGGTCAGCCTCGTCGGTCCGAAT GGCGCAGGCAAGACGACGCTGATGCGCTGCCTGAGCGACGGCACCGAAGCCACGACCGGA ACCGTCACCATCGCCGGCCAAGACATCAGCGGCATGACACCGGATGAAATCGTCGCCCTC GGTGTCGGACGCAAGTTCCAGGTGGCGAGCGTCTTCGACAGCCTGACCGTCGCCGACTGC CTGCGCATGGCACGCGCCTCGCGCAACGCGCCGAGCCTGCTGCGCCGCTCCGCCACGCTT GGGCTGCCGGCGGCCGCCGCCGACATTCTGCGCTCCACCGGGCTCGACCGCATGCTCGGC CGGCCGGTGTCACTGCTGTCGCACGGGCAAAAGCAGAGTCTCGAGCTCGCCATGGTCGTT GCGCTCGAGCCAAAGCTCATCCTGCTCGACGAGCCGACGGCCGGGCTGACCAAGGTCGAA CGCACCACCATCGGCGCGACGCTGCAGAAGCTGACCGGCGAACTCGGCTTCGCCGCCATC CTGGTCGAGCACGATCTCGATTTCGTCCGCGACATCTCGACCAGGATCGTCGTTCTTCAC CAGGGCAAGCTCGTCCTCGACGGCAGCGTCGATCAGGTCGTCAATTCTGAAGTGGTGAGG ACGATCTATTCGGGAGGCGCCCATGCTTGAGGCAAGACAGGCAGAGGCCAAAACCATCGC GCCGAAACTGTCGCTGTCGAATGTTTCGAGCGGCTACGGGCCGGTTGCCATCATAGAGGC GCTGTCGCTGGCCATCGCGCCCGGACAGATCTTCGCGCTGATGGGTAAGAACGGTATGGG CAAGACCACCGTGCTGAAAACCATCCTCGGCTTCGTGGCGCTGCGTTCGGGCGACATCCG CCTCGATGGCGCGTCCATGTCGGGTGTCTCGCAGGCCTCGCTGATCGCGTCCGGCGTCGG CTATGCGCCGCAGGAGCAGGCCCTGTTCCAGGATCTCAGCGTGCGCGACAATCTGCGCCT CGCCTTGCGCTCGGATCGCGGTTTTGCGCAAGCCGTGGAACGGGTTTACGGGCATTTTCC GTTCCTCAGGGAGCGCCTGTCGCAACGGGCCGGAACGCTGTCCGGCGGCGAGCAGAAGAT GCTCATCCTCGGCCGCGCGCTGATGCTGCGGCCGAAGCTGTTGCTGATCGACGAGATATC CGAGGGCCTGCAGCCCTCAGTCGTCGAACGCATCGCCGCGGCACTCAGGGAGGAGCGCAG GACGAACGGCACGACAATCCTGATCGTTGAGCAGAACCTGCCCTTCGCCCTCGGCATCGC GGACAGCTGGGCGGTGCTGAAGCTCGGCCGGATCGACGATGCCGGAGACGTGACGGCGGG CACAGCGGCCCGAGTTCTTCAGCACCTGAAGATCTAAGACACCTGCATCCGGAAGGGAGG TCGCGGCAACGATAGTCCGGTTCGGGCGCGTTCCGGCCTCTCAGTCTGGAGATCCGAACG TCCGACTAGCGTCAACTCACCACGATAATCCGCCGACCCAAAGCGGAAGTTCGCTTCCGC TCAGTCGAACTCACGCCCATGACCCATCGGTGACCTTCATTGTCCGCATTGTGAACGGCA GCAATGCTGACCCAATGCGGACACAACTCGCAGACACCGGGGAAGCGAAACTAAGGAGAG CCGAGACTAAGGAGAGCCAATGTGCTTAAGCAGCGAACGCCCAACTAGTGGCTTTTGAGC AGTCGCCATGCCGCCGAATGCCTGTCAAGTGACGACCTGGATTTCCGTCTTCACGGAATT GGCAATGAAGCACTGTTCATGCGCCGAGTGGTGCAGTTCCGCTTCTGTTGCGGCGGTTGG CGTTTCCCCGGCGTAGACAATGGTCGGATTGAGATCAACGCGGCTGACCACCAATCGTCC GTCCACCTTCTCCATCATGCCGACCGCCTTGTCGGTATAGCTCTCCACGACGATCCCCTG GGGCGCCGCGATCGAGAGAAAGGTCAACATGTGGCAGCTGGAAATCGCCGCGATGTAAGC CTCCTCCGGATCGACGTTGGCCTCTACTGAATAAGGAAGCGGAACGATATGCGGCGAAGC GGATGCCGGCACCACTTGGCCCCCGTCGAAGCGCCAGATGTGCGCGCGGCTGTAGCGCTT GTCGGTGAATACCGCTCCTTCTCGCTCCCAGTGCACTTCGACGGTCATTTTCATGATTGA TCCTTTGTCGGAACGGAAAGAAGTCTTGCAGTCGTCTGGATCAGATGGCAGCGAAGATGC TGCGCCGCAGCGTCGAAATCGCGCCTCGCACAAGCGGCAACGATCGCCGCGTGTTCCTTG AAGAAATCAATTCGCTCCTGGGCGCCACGCCCTTGGTGAAGGGTTGACCGCCGGGATTCT CGTCGAAGGTCTCCGATGGTCTTAAGCAGTCGAGTGTTCGTGCAACCGCTGTACAGGGCG AGGTGAAACTGTTGGTCGAGCTCCAGAATCCGCGACGGATCGTACTCCGCGAACAGCTCG TCGTTAAGCCTCTCAGCCTTACGCAAGGCGGAAGGCAGAAGCTCCGGCAGCGACTGCTCC AAGGCAGCGACCTCCAAAATGGCCCGAAGTCCGCAAAGTTCGGTCGCCTCCCGTTCTGAG AGGATCGCGACTGCCAGGCTTCGATCGGGTCGCCGCACGACCAAGCCCCTTCCGAGCAAG CGGTCCAGGGCCTGCCTGACTGGCTGGCGGCTCACTCCGAAACGCTCGGCGATCGATTCC TGCTTGAGAACCAAACCTGGTGCCAATTCACCTGACTCAATCTCGTCTTGCAGCTCGCTA AAAATCGATTTTGGATCCATGGATCCAAATTGTGTAATATTTCGGAATTGGTCAAGCTCT AATCAGCTTCAACCGTTTTCCTGGAACATGCCATTCTCGCTTTTCGCTCAAGCGCAGGAA CAAAGTAATGAGTTGCTTTGCGCCGATCTCGGCCATCACACGACTACAAGCGGCACGGCA CAACGACGCTCTTCGCTGCCCTCAACGTGCTGAACGGCACGGTCATCGCGCAGAACATGC AGCGCCACCGCCATCAGGAGTTCATCCGCTTCCTCAACCGCATCGAGCGCGAGGTGCCGG CAGACAGGCAATCCATGTGATACTCGACAATTTCGCCGCGCACAAAAAGACAAGGTCCGC GCCTGGCTCGACCGCCACCCGCGCTGGACCTTCCATTTCACCCAGCATCCTGCTCCTGGC TCAACGCCGTCGAGGGCTTCTTCGCCAAACTCACCCGGCGCAGGCTCAAGCACGACGTCT TCCATTCCGTTGTCGATCTTCAGGCCGCCATCAACCGCTTCATCCGCGAATACAATGCCG AGAACCCGCGACCATTCATCTGGAAAGCCAACCCCGATGACATCATCGCCGCCCGAAACC GCGGTTCCAAACGTTGGAATCAATCCACTAGGTCGTGAGGCACGTACCGTCGAAAGGATG AATTCGGCTCTCAAAGGACGAACTTACAATCCCCGTCGGCGGCCTCTAAGCTCACTTTGA CGCAAGAGATCACTTCTAGAAGGCTATCATATGAGTGATTTCGACTTACGAAGGGCCAAC GCTCTAAGCTTCTTCCGGCTACTCTTTGCGTCGCTTGTTATTATATCCCACTCGCCGGAG CTTATAGATGGTAACTCGAATCGTGAGGTGCTGAAGAACATCTTCGGTACGTTGACCTCC GGCCAGGTAGCTGTTTACGGCTTCTTCTTCATTAGTGGCTTCCTCGTGCTCGACAGCGCG ATGCGAAGCAGCATCTACGCCTTTATGTCCAGACGTGTACTTCGTATAGTTCCTGGTTTT GTTGTGGCATACTTGATCAGCATTAGTCTGGTATTTTGGCTGGGAGGTGGTGATTTTGGT GAACTATCTCCGAGCCAGTGGGCGGCTAAGCTTTCCAAAATGGCGCTCTTGCTGAACCCG GCGCAGGTAGGATCGGCGTTTGCCGGGTCCCATGCACCAGATGTTAATGGATCACTATGG ACTATTGCATACGAGTTTCGCTGTTATGTGCTTGTGGCAATTGTGGTATTCTGTCTCGGT CGCGCCACGCTTGTCTTTTCGATCATGTCAGTTTCACTGGCAATAATCCTCGTTAGTTCC ATTTCGCAAGGTGTCTACTTTCGCTACGATCTTGGAAACTTTGAGCCCATCGGCAACGTG GACGATGCCGTACGTTTTACGATGATATTTTCCATTGGGGCGTTGTTTCAGCTGCTCAAG GAATATGTGAGGAGGAGCAATCGGGTAGCGCTTTTGTGCTGTATCCTTCTCATAGGCGGG ATGTGCTCGGAACGGCTAGCGCCCCTCGCAGTGGGCGTGTTTGGAGGTTATCTGCTCCTG TATTTGGCGTTTCTAAACGAGAACAGCGTCTTAAATTCGATTAACCGAAGGAATGATATA TCCTACGGCGTGTATCTCTACGCATGGCCGATTCAGAAGCTACTGATCATGTATGTTCCG GCAATCACGCCTACGCAGCTAACGATCTTGACCTTGCCTATAGCAGTCTGCGCGGGCTTT CTCAGCTGGCATCTTGTTGAGAAACGCGCGATCCGTATGCGGCTGGCGATCCTCCGCACT GCATAGTTCGGCCGTCGTTGGGCCGGTGCCCATGCTTGAAGACGACCTCGGTCGAAGGCG AGGGCTCCGCCCGTCGGATAGACGCGGTTTCGCTCGCCGGACCGCCAGCACATGCTCGAC GTGCCAGTTCCCATTGGCGTAGGAGGCGGGCAGAATGGTTACCCAAGTCCATCGATGCCA TAAACGACGCGATCGCCCGGGCCTTGCGCTTAAGACCCCTCGCGCCTGGCGTCGTCGAGC TCATAGATCACCTGTGGGCGGTGCGCACTCAGGACCGACCGCTTCGGCGAACACGCAGAT GGTGTCGAACCTGTTGGGCCGAGCGCTCTGCTCAATCGCGGCAACGCTTTGCGGCACCGG TTCAAATGCGTAGACGCGCCCTGCCGCCCCCCGCGCGGCGCGGCGCAATCGATGTCGTAG ACATACGTCACCTGCGTTCAGGTTCGATGCAAGTGGCTGCTGGACCGGCGGCTCGTAGGC GCCCCGCGCAAAATCTGGATCGCCGCCTCGCGTTACGATCCTGAGGCCACCCGCCTCGCC ACCAGCAATGCGTTGCGATTTGGAGAACAGGTTGCGGAGCGTTACAGCCAGGTTCACTCG GCCTTCTTCACTCCGCCCTTTGGGCTGGGTGCACCTGACGGCCGTTAGTGAAGAGAGCGG CGGGCCTGACGGGCCCATTCCAATCCGACATGGGTTGGTCCGTAGACCGATACTCTCATC GGGTTGAGCGCTACGCTCAGGATCGCCGCATGCGCATCACATCAAGCTGCGAGGCACTTG GCGATCGCCGCCCACCGCTAAGGCTCAATGGCTCACGATCTTTGTGGGTGCCTGGGCGCA GTTTCTGATAGACGGACTTGAGCCGTTCAGCGCGCGCCTCCCACGAATACAGCTCGACGG CACGCTTGCGCCCTTCGTTTCCCATTTCGCTTGCCCGGACCGTATCCTCCAGCATCGTGA TCAATGCCTGGGCGAGCTCGCCAGGAGCATCGACTTCGACCAGCATCCCGGTGCTGCCAG CTAGAATGGATTCACACATCCCGCCCACGCGCGTTCCCACCACCGGTATCCCGCAGGCCA TGCCCTCCACGACCGATATTCCGAAGCTCTCGCTGAGTGACGGATTCACCACAATGTCGG CCTCATGGTACGTCGCTACGAGGTCCTTGTGGGGCACGTTGCCCACGAAGTGAACTCGAT CACGTAACCCGTGGCTCTCTATGAGTTCCTCTAAGTGTTCCCGATATTTGCAATTGCCCC AGCGATCGTAGAAACGGCTCAACGCGGTAACCCGCGGATCCGACGAGAGGCTGGTCAGGA AGTCCGCCGGAAGCGGAGAATGCGGCCCTGCGATCCGAAGTTCCACGTCCGCGAACCTGG CCGCAACCTCACTGAAGGCCTCGATCAGTGTGTGAAGCCCCTTCTCTGGCGACACCCGCC CAACGAACAGGATGACACGTCGGGTTCTGATGGATGCGGAAGCCCGCTGCTCGCTCGGCC GAAAGTAAGAAACGTCCACGCCATTACCGACAGTGGCAACGACGCCAGGATAGTCCGGGA ATGCAGAACGAAAGGTCCTTGCGATGTGGTCGCTGACGGCGACCACCGCATCCACCACCT TGAGCTGACAGGCCACCTGATCGCGGTCACGCTGTGACAGCCACTCACACTGCATCTCAA GCACGAGCCGATGAGATGAGCTGGCTGCCTTCAGTTCCCGGCACCATGCCCAGTAATTCA TCAAATGGACGATATCCGGTTGATCGACGGCGAGGTAGCGACGAACCTTGTTACGATATT GCGAGTGGTCATCGGCCTTCCGATCCAGCCGCAGCCAGCGCGCCAGGCGCGGAAACTGGT GGATGATCCGCTGCAGCGCGCGGTCACGCCGCGCCGCAGCCCGCCGCACCGCGAACGGCA GGTCCGCGGGCACCGTGTCGTCTCGATAATGCTTGCCATAGAGCGTAATCTGCAGGCCTT CGCCGAGCCGCAGCGCCGTATTGTAGACGATCAGACCGATTGAGTTTTGAACAGGCGGAA AGAGTCTATCGTACGGCTGACCGACGTATACGAGCTTCATGTCACTCCCCACCGTCGGCT CGTTCAGGCGACTCTTCTAAGTGCAGGGCGGTCTTCCGGTCGGGAGAGGTGGTCGGCGAG GCGGCGAATGCCCTCTTCGAGCGGCACCAGGGGACGGTTCAATATAGCCTTCATCTTGTT CGTGTCAGGACAGCGGCGCGTCATGTCGCCCTCCGCAAGGGGCGGTCGGAATTCCAACTT CGATGACGAGCCCAGCACTTCGATGACAAACTCGGCCAGCTGTCGAATGCTCATTTCCAC GTCGCTGCCAACGTTGATCACTTCGTTCTCGTACGCGCGCGTTCGATGAACCGCGATGCA AGCGTCAACCGTGTCGTCGACATAGCAGAAGGTGCGGGTCTGAGAACCGTCCCCGTAAAT CGTCAGGGGCTCGCCGCGCTGGGCTGCACGCACAAATCGCGGCAGAACGAAATCCTCGCT CTGACGTGGTCCGTAGGTGTTGAAGAAGCGAAAAATGGTAAATGGCAGTCCAAACTCGCG CTGAAAAGTGCGCAGATAGACCTCCCCAAGATTCTTCACCACTGCATACGGCAGACGTGA GTTAAGCGGCGTGGTGCTCTCATTTTGAGGAATCTCAAAAGGCTCGCCATATACCTCCGA TGACGAAGCGAAGTAGACACGCTCGGCGCCGGTGTTCTTGCATAGCCTCAGCACGTTCTC GATACCGGTGATGTCGCGCAGCACGAGCAACGGATTTGCCAAAGTCCGCTGCACACCGAC CACGGCTGCGAAATGGAAGACGTGGGTGAAATGGAAGCGGTAGAACAACGATGAGATGTC GTCGAAATCGTTCGCATCCGCCTTTACTACGGTCAGATTGCCCGCGTCTATTTGTACCTT GTCTCGACTTCCGGTCGACAGGTTGTCAGCGACGACCACCTGGGTCTGAGGTAGCTTGAC CAACGCCCGAGTGAGGGCACTGCCGATATTGCCCGCTCCACCAGTTACCAGGATCGATTG CGTCATAAT
Region Details
| Region | 1 |
| Region Length | 8.7Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | transposase |
| Region Position | 200643-209411 |
| # tRNA | 0 |
| # Total Proteins | 9 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 1 |
| Phage + Hypothetical Protein % | 77.7% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Plankt_PaV_LD_NC_016564(1) PHAGE_Shigel_Sf6_NC_005344(1) PHAGE_Escher_phAPEC8_NC_020079(1) PHAGE_Bacill_SPbeta_NC_001884(1) PHAGE_Bacill_G_NC_023719(1) PHAGE_Synech_S_SKS1_NC_020851(1) PHAGE_Strept_BillNye_NC_042105(1) PHAGE_Bacill_BM5_NC_029069(1) PHAGE_Synech_ACG_2014f_NC_026927(1) PHAGE_Prochl_P_SSM2_NC_006883(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 11.11% |
| GC % | 60.09% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|SAQM01000010.1| Mesorhizobium sp. isolate N.Ca.IN.013.03.1 217414, gc%: 60.89%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 9 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 200643..202412 | PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; EOR79_15875; phage(gi371496158) | 2.88e-16 | Showinfo_outline |
| 2 | 202405..203139 | PHAGE_Bacill_G_NC_023719: gp245; EOR79_15880; phage(gi593777701) | 4.53e-11 | Showinfo_outline |
| 3 | complement(203487..203939) | OsmC family peroxiredoxin; EOR79_15885 | 0.0 | Showinfo_outline |
| 4 | complement(203933..204562) | GntR family transcriptional regulator; EOR79_15890 | 0.0 | Showinfo_outline |
| 5 | 204698..205180 | PROPHAGE_Pseudo_KT2440: transposase, putative; EOR79_15895; phage(gi26991145) | 2.40e-22 | Showinfo_outline |
| 6 | 205293..206348 | PHAGE_Shigel_Sf6_NC_005344: gene 15 protein; EOR79_15900; phage(gi41057293) | 3.45e-20 | Showinfo_outline |
| 7 | complement(206451..206939) | hypothetical protein; EOR79_15905 | 0.0 | Showinfo_outline |
| 8 | complement(207079..208422) | PHAGE_Strept_BillNye_NC_042105: hypothetical protein; EOR79_15910; phage(gi100015) | 2.80e-05 | Showinfo_outline |
| 9 | complement(208446..209411) | PHAGE_Synech_ACG_2014f_NC_026927: hypothetical protein; EOR79_15915; phage(gi100233) | 1.83e-40 | Showinfo_outline |
Sequence
>200643..202412
MesorhizobiumspMHENRSTPARVWLFAALALAAAVIVIIGPALFDRFTLNVLTRSMIYAMLAVTVDILWGYTGILTFGQAAFFGTGAYASAMVLSHLGASPALMVLALALAIIVPVLLGAFVGWLSFGHGSTPLYATVISLVVPIVVTQLVFSGGVWTGSSSGLVGYSGLPLGLPGYFRLTGICLIVTAVVALVFTRSDAGKLLVAIRDNEARCAYLGLDPQRLKIVLTTILAGVAGIAGFLYANASGVVAPENTGFVFGTEIVIWTALGGRGTIIGPVIGAIGIDYLSAQLSGDLPFLWNLVVGALFVVMIILLPNGLAQLARMVLPRGNEQASPSGSPTLAAEPAGSGSEAGNRVLAVGGLGKSFGSLQVLQGIDLDVHPGELVSLVGPNGAGKTTLMRCLSDGTEATTGTVTIAGQDISGMTPDEIVALGVGRKFQVASVFDSLTVADCLRMARASRNAPSLLRRSATLGLPAAAADILRSTGLDRMLGRPVSLLSHGQKQSLELAMVVALEPKLILLDEPTAGLTKVERTTIGATLQKLTGELGFAAILVEHDLDFVRDISTRIVVLHQGKLVLDGSVDQVVNSEVVRTIYSGGAHA
Sequence
>202405..203139
MesorhizobiumspMLEARQAEAKTIAPKLSLSNVSSGYGPVAIIEALSLAIAPGQIFALMGKNGMGKTTVLKTILGFVALRSGDIRLDGASMSGVSQASLIASGVGYAPQEQALFQDLSVRDNLRLALRSDRGFAQAVERVYGHFPFLRERLSQRAGTLSGGEQKMLILGRALMLRPKLLLIDEISEGLQPSVVERIAAALREERRTNGTTILIVEQNLPFALGIADSWAVLKLGRIDDAGDVTAGTAARVLQHLKI
Sequence
>complement(203487..203939)
MesorhizobiumspMMKMTVEVHWEREGAVFTDKRYSRAHIWRFDGGQVVPASASPHIVPLPYSVEANVDPEEAYIAAISSCHMLTFLSIAAPQGIVVESYTDKAVGMMEKVDGRLVVSRVDLNPTIVYAGETPTAATEAELHHSAHEQCFIANSVKTEIQVVT
Sequence
>complement(203933..204562)
MesorhizobiumspMDPKSIFSELQDEIESGELAPGLVLKQESIAERFGVSRQPVRQALDRLLGRGLVVRRPDRSLAVAILSEREATELCGLRAILEVAALEQSLPELLPSALRKAERLNDELFAEYDPSRILELDQQFHLALYSGCTNTRLLKTIGDLRRESRRSTLHQGRGAQERIDFFKEHAAIVAACARRDFDAAAQHLRCHLIQTTARLLSVPTKDQS
Sequence
>204698..205180
MesorhizobiumspSHDYKRHGTTTLFAALNVLNGTVIAQNMQRHRHQEFIRFLNRIEREVPADRQSMYSTISPRTKRQGPRLARPPPALDLPFHPASCSWLNAVEGFFAKLTRRRLKHDVFHSVVDLQAAINRFIREYNAENPRPFIWKANPDDIIAARNRGSKRWNQSTRS
Sequence
>205293..206348
MesorhizobiumspMSDFDLRRANALSFFRLLFASLVIISHSPELIDGNSNREVLKNIFGTLTSGQVAVYGFFFISGFLVLDSAMRSSIYAFMSRRVLRIVPGFVVAYLISISLVFWLGGGDFGELSPSQWAAKLSKMALLLNPAQVGSAFAGSHAPDVNGSLWTIAYEFRCYVLVAIVVFCLGRATLVFSIMSVSLAIILVSSISQGVYFRYDLGNFEPIGNVDDAVRFTMIFSIGALFQLLKEYVRRSNRVALLCCILLIGGMCSERLAPLAVGVFGGYLLLYLAFLNENSVLNSINRRNDISYGVYLYAWPIQKLLIMYVPAITPTQLTILTLPIAVCAGFLSWHLVEKRAIRMRLAILRTA
Sequence
>complement(206451..206939)
MesorhizobiumspVNLAVTLRNLFSKSQRIAGGEAGGLRIVTRGGDPDFARGAYEPPVQQPLASNLNAGDVCLRHRLRRAARGAAGRVYAFEPVPQSVAAIEQSARPNRFDTICVFAEAVGPECAPPTGDLARRRQARGVLSARPGRSRRLWHRWTWVTILPASYANGNWHVEHV
Sequence
>complement(207079..208422)
MesorhizobiumspMKLVYVGQPYDRLFPPVQNSIGLIVYNTALRLGEGLQITLYGKHYRDDTVPADLPFAVRRAAARRDRALQRIIHQFPRLARWLRLDRKADDHSQYRNKVRRYLAVDQPDIVHLMNYWAWCRELKAASSSHRLVLEMQCEWLSQRDRDQVACQLKVVDAVVAVSDHIARTFRSAFPDYPGVVATVGNGVDVSYFRPSEQRASASIRTRRVILFVGRVSPEKGLHTLIEAFSEVAARFADVELRIAGPHSPLPADFLTSLSSDPRVTALSRFYDRWGNCKYREHLEELIESHGLRDRVHFVGNVPHKDLVATYHEADIVVNPSLSESFGISVVEGMACGIPVVGTRVGGMCESILAGSTGMLVEVDAPGELAQALITMLEDTVRASEMGNEGRKRAVELYSWEARAERLKSVYQKLRPGTHKDREPLSLSGGRRSPSASQLDVMRMRRS
Sequence
>complement(208446..209411)
MesorhizobiumspMMTQSILVTGGAGNIGSALTRALVKLPQTQVVVADNLSTGSRDKVQIDAGNLTVVKADANDFDDISSLFYRFHFTHVFHFAAVVGVQRTLANPLLVLRDITGIENVLRLCKNTGAERVYFASSSEVYGEPFEIPQNESTTPLNSRLPYAVVKNLGEVYLRTFQREFGLPFTIFRFFNTYGPRQSEDFVLPRFVRAAQRGEPLTIYGDGSQTRTFCYVDDTVDACIAVHRTRAYENEVINVGSDVEMSIRQLAEFVIEVLGSSSKLEFRPPLAEGDMTRRCPDTNKMKAILNRPLVPLEEGIRRLADHLSRPEDRPALRRVA
Mesorhizobium sp. isolate N.Ca.IN.013.03
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 217414 bps
Phages: 1
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Locus 1: EOR79_15875 (Region 1)
Locus: EOR79_15875ORF Start: 200643
ORF Stop: 202412
Strand: Forward
Protein Sequence: MHENRSTPARVWLFAALALAAAVIVIIGPALFDRFTLNVLTRSMIYAMLAVTVDILWGYTGILTFGQAAFFGTGAYASAMVLSHLGASPALMVLALALAIIVPVLLGAFVGWLSFGHGSTPLYATVISLVVPIVVTQLVFSGGVWTGSSSGLVGYSGLPLGLPGYFRLTGICLIVTAVVALVFTRSDAGKLLVAIRDNEARCAYLGLDPQRLKIVLTTILAGVAGIAGFLYANASGVVAPENTGFVFGTEIVIWTALGGRGTIIGPVIGAIGIDYLSAQLSGDLPFLWNLVVGALFVVMIILLPNGLAQLARMVLPRGNEQASPSGSPTLAAEPAGSGSEAGNRVLAVGGLGKSFGSLQVLQGIDLDVHPGELVSLVGPNGAGKTTLMRCLSDGTEATTGTVTIAGQDISGMTPDEIVALGVGRKFQVASVFDSLTVADCLRMARASRNAPSLLRRSATLGLPAAAADILRSTGLDRMLGRPVSLLSHGQKQSLELAMVVALEPKLILLDEPTAGLTKVERTTIGATLQKLTGELGFAAILVEHDLDFVRDISTRIVVLHQGKLVLDGSVDQVVNSEVVRTIYSGGAHA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EOR79_15875, ABC transporter, phage(gi371496158), PHAGE_Plankt_PaV_LD_NC_016564
Homolog/Ortholog E-Value: 2.88e-16
Locus 2: EOR79_15880 (Region 1)
Locus: EOR79_15880ORF Start: 202405
ORF Stop: 203139
Strand: Forward
Protein Sequence: MLEARQAEAKTIAPKLSLSNVSSGYGPVAIIEALSLAIAPGQIFALMGKNGMGKTTVLKTILGFVALRSGDIRLDGASMSGVSQASLIASGVGYAPQEQALFQDLSVRDNLRLALRSDRGFAQAVERVYGHFPFLRERLSQRAGTLSGGEQKMLILGRALMLRPKLLLIDEISEGLQPSVVERIAAALREERRTNGTTILIVEQNLPFALGIADSWAVLKLGRIDDAGDVTAGTAARVLQHLKI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EOR79_15880, gp245, phage(gi593777701), PHAGE_Bacill_G_NC_023719
Homolog/Ortholog E-Value: 4.53e-11
Locus 3: EOR79_15885 (Region 1)
Locus: EOR79_15885ORF Start: 203487
ORF Stop: 203939
Strand: Backward
Protein Sequence: MMKMTVEVHWEREGAVFTDKRYSRAHIWRFDGGQVVPASASPHIVPLPYSVEANVDPEEAYIAAISSCHMLTFLSIAAPQGIVVESYTDKAVGMMEKVDGRLVVSRVDLNPTIVYAGETPTAATEAELHHSAHEQCFIANSVKTEIQVVT
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: EOR79_15885, OsmC family peroxiredoxin
Homolog/Ortholog E-Value: N/A
Locus 4: EOR79_15890 (Region 1)
Locus: EOR79_15890ORF Start: 203933
ORF Stop: 204562
Strand: Backward
Protein Sequence: MDPKSIFSELQDEIESGELAPGLVLKQESIAERFGVSRQPVRQALDRLLGRGLVVRRPDRSLAVAILSEREATELCGLRAILEVAALEQSLPELLPSALRKAERLNDELFAEYDPSRILELDQQFHLALYSGCTNTRLLKTIGDLRRESRRSTLHQGRGAQERIDFFKEHAAIVAACARRDFDAAAQHLRCHLIQTTARLLSVPTKDQS
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: EOR79_15890, GntR family transcriptional regulator
Homolog/Ortholog E-Value: N/A
Locus 5: EOR79_15895 (Region 1)
Locus: EOR79_15895ORF Start: 204698
ORF Stop: 205180
Strand: Forward
Protein Sequence: SHDYKRHGTTTLFAALNVLNGTVIAQNMQRHRHQEFIRFLNRIEREVPADRQSMYSTISPRTKRQGPRLARPPPALDLPFHPASCSWLNAVEGFFAKLTRRRLKHDVFHSVVDLQAAINRFIREYNAENPRPFIWKANPDDIIAARNRGSKRWNQSTRS
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: EOR79_15895, transposase, putative, phage(gi26991145), PROPHAGE_Pseudo_KT2440
Homolog/Ortholog E-Value: 2.40e-22
Locus 6: EOR79_15900 (Region 1)
Locus: EOR79_15900ORF Start: 205293
ORF Stop: 206348
Strand: Forward
Protein Sequence: MSDFDLRRANALSFFRLLFASLVIISHSPELIDGNSNREVLKNIFGTLTSGQVAVYGFFFISGFLVLDSAMRSSIYAFMSRRVLRIVPGFVVAYLISISLVFWLGGGDFGELSPSQWAAKLSKMALLLNPAQVGSAFAGSHAPDVNGSLWTIAYEFRCYVLVAIVVFCLGRATLVFSIMSVSLAIILVSSISQGVYFRYDLGNFEPIGNVDDAVRFTMIFSIGALFQLLKEYVRRSNRVALLCCILLIGGMCSERLAPLAVGVFGGYLLLYLAFLNENSVLNSINRRNDISYGVYLYAWPIQKLLIMYVPAITPTQLTILTLPIAVCAGFLSWHLVEKRAIRMRLAILRTA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EOR79_15900, gene 15 protein, phage(gi41057293), PHAGE_Shigel_Sf6_NC_005344
Homolog/Ortholog E-Value: 3.45e-20
Locus 7: EOR79_15905 (Region 1)
Locus: EOR79_15905ORF Start: 206451
ORF Stop: 206939
Strand: Backward
Protein Sequence: VNLAVTLRNLFSKSQRIAGGEAGGLRIVTRGGDPDFARGAYEPPVQQPLASNLNAGDVCLRHRLRRAARGAAGRVYAFEPVPQSVAAIEQSARPNRFDTICVFAEAVGPECAPPTGDLARRRQARGVLSARPGRSRRLWHRWTWVTILPASYANGNWHVEHV
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EOR79_15905, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 8: EOR79_15910 (Region 1)
Locus: EOR79_15910ORF Start: 207079
ORF Stop: 208422
Strand: Backward
Protein Sequence: MKLVYVGQPYDRLFPPVQNSIGLIVYNTALRLGEGLQITLYGKHYRDDTVPADLPFAVRRAAARRDRALQRIIHQFPRLARWLRLDRKADDHSQYRNKVRRYLAVDQPDIVHLMNYWAWCRELKAASSSHRLVLEMQCEWLSQRDRDQVACQLKVVDAVVAVSDHIARTFRSAFPDYPGVVATVGNGVDVSYFRPSEQRASASIRTRRVILFVGRVSPEKGLHTLIEAFSEVAARFADVELRIAGPHSPLPADFLTSLSSDPRVTALSRFYDRWGNCKYREHLEELIESHGLRDRVHFVGNVPHKDLVATYHEADIVVNPSLSESFGISVVEGMACGIPVVGTRVGGMCESILAGSTGMLVEVDAPGELAQALITMLEDTVRASEMGNEGRKRAVELYSWEARAERLKSVYQKLRPGTHKDREPLSLSGGRRSPSASQLDVMRMRRS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EOR79_15910, hypothetical protein, phage(gi100015), PHAGE_Strept_BillNye_NC_042105
Homolog/Ortholog E-Value: 2.80e-05
Locus 9: EOR79_15915 (Region 1)
Locus: EOR79_15915ORF Start: 208446
ORF Stop: 209411
Strand: Backward
Protein Sequence: MMTQSILVTGGAGNIGSALTRALVKLPQTQVVVADNLSTGSRDKVQIDAGNLTVVKADANDFDDISSLFYRFHFTHVFHFAAVVGVQRTLANPLLVLRDITGIENVLRLCKNTGAERVYFASSSEVYGEPFEIPQNESTTPLNSRLPYAVVKNLGEVYLRTFQREFGLPFTIFRFFNTYGPRQSEDFVLPRFVRAAQRGEPLTIYGDGSQTRTFCYVDDTVDACIAVHRTRAYENEVINVGSDVEMSIRQLAEFVIEVLGSSSKLEFRPPLAEGDMTRRCPDTNKMKAILNRPLVPLEEGIRRLADHLSRPEDRPALRRVA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EOR79_15915, hypothetical protein, phage(gi100233), PHAGE_Synech_ACG_2014f_NC_026927
Homolog/Ortholog E-Value: 1.83e-40
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download