Submission Results
Sequence Name: Not Available
GenBank Accession Number: SBHL01000060.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: SBHL01000060.1.PHASTER.zip
gi|00000000|ref|SBHL01000060.1| Hungateiclostridium thermocellum strain PAL5 PAL5_contig_44, whole 44176, gc%: 37.90%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 20.1Kb | incomplete | 40 | 20 | 19111-39225 info_outline | PHAGE_Rhodoc_REQ3_NC_016654(2) | 38.34% | Show info_outline |
Region DNA
>1 19111-39225 TTATATTCTTTCCTCCACCCTAGCCCCACTTTTCAATTCAAAAACAAAATGCGTTGGTGA GACGACCTCTATCTTCTCAACCAACGCATTGAATATTCCTTCATCAAACTCTTCTAGGGC TTCCTGCCTGCCCTTTATAACCTCAATAATCTCATCTACTCTTCCCTTCAGGCTATCCTT CAATATACTGTCCTTATCAACCTCTGCCCTCTTTTCTCTCAATTCCTCCAGTTCATCTGA AATCCTCTTGTACTCTTCCCTGTAAACCTCATCGTCCATACCGTTATTGGTCTGGAATCG TATCAGTCTTTTCAGTTCAGTTTTCAGTTCTTCAATCTTATTTTCCAATGCTTCAATTTC TCTATCACTCGGCTTATGAAGAAACACCTTCTCTATATTTTCAATCAGCGTCTTTATAAA ACCTTCACGATTCTCATATAATTGGTTGAACACCCTGACAAAGGCATCTTTCAAAACGCT TTCATCCACTGCTTTGGCTGCGCATGCCTTTTTTCCATTCATTATATAGGTTTTACACTG CCATACGAATTTCCTGGATGGGTTATTGCTGTTCCACTGCCTTCTTCTGTATATATTACC GCAGTTCCCGCAGAAGACCTTGCCGCTAAAGGGGTATTTATTAGAATATTTCTGCCTGTC GCCTTCAACATTGTTATATTTTGCAGCCCTTCTTGCCTTTTCAGCCTGTACCCTGTCAAA TATCTCCTTTGATATAATCGGAGGATGATTTCCTTCTATTATGTATTGTTCTGCCTGTCC TTTATTATCCACCCTTTTGTGTCTGAGAAAATCAACTGTGATTGTTTTCTGAAGCAGGGC ATCACCATAATACTTTTCATTTTCTAGTATGCCGCTGATGGTAGAATCCCACCATTTTGT ATTGCCGGTTACCGTCTTTATTCCGTCCTTCATCAACCCTTTAGCAATTGCGTTGTAGCT TTTGCCTTCAAGGTATTCTCTGAATATCCTGCGGACGATTTTAGCTTCTTCTTCATTTAT AATAAGCTCTCCTGCTTCATTTTTGTCATATCCAAGGAATCTTGTGGTATTCACCAACAC CCTGCCTTTTTCAAACTGCCGCACAATTCCCCACCGGGTATTTTCAGATATATTACGGCT CTCATCCTGCGCAAGGCTGCTTAGAATTGAAAGTAAAACCTCTCCCTTACTATCCAGTGT GTTGATGTTTTCTTTTTCGAAGAATACTGCTATTCCTTTTTCCTTAAGCCTTCTCACATA ATCAAGGCAGTCAAGCGTATTCCTCGCAAACCTTGAAATAGACTTGGTAATAATCATATC AATCTTGCCGTCCATGCAGTCCTGAATCATCCTTTTGAAATCTTCCCTTTTTGCCGTACT CGTTCCCGATATCCCGTCATCAGCATAAATATCGACCAGAGTCCAGTCACTTCTGCTGTT TATATAGTTCGTATAGTAGAAAACCTGCGATTCATAACTTGATTCCTGTTCCTTGTTGTC GGTGCTTACCCTGCAATAGGCGCAAACCCTTGTCTTTGCGTTTTCAGGCAATCCCTTAAT TACCTGAACCGGCTTTGCTTCAATTTTTCTTATCTTTTTTACTGCTGTATTTGCTGCCAT AAAATCCTCCCTTTCGAATATATTCTTTTTGTGGTCACATGATATAATCGCTTGGGGCAT TAATCAAGTCAAAACTTGATATTCCAAGGCTTTGAAAGATTTTTTGTTTTCTAAATCTAT GGCTTCAAATTCCTCTTGTGTTATAAGGTTGTTTTTCTTTAATGTATTTAATATATGTAA ACTCAATCTATAATTGATATTCGCTTCATTTATCATATAATCTCTTGTCCCCCTTCATTA AACCCATATATGAAAGGGGCTTGCCGGAAGGTAAGCCCCTGTTAAAACAAACTTTTTATC TGAATATTGAATTCCTTAAATACTGTAGAATCATCCGATAACGTGGCTGTCAAGACCACA TATTTATTCAGGTAGGCAGAGCTGCTTGCTGCCTTTACGGTTGCGCTGTTCCCTATTGAC GCTGTAATGGAAGCATATGGCGTTGAAGTCCCGTCCTGATTGCGGATAGACCATGCAACG GATTTGTCAAACACTTCATTTCCATTATCATATATGTGTGCCACATAGGATTGGCTCTGT CCCAGTTTCACCGTACTGCTTCCCGTTATGGTGATTGAATAGTTGTGTGCTAAGGTTTCT ACTGTAGTTATTGTAATGGAATCTGCAACCGTATCGTGATATGTAAGCTTTGCCGTAATT ACAGCCTGTCCCAGTGCGATTCCCATAACCTTTCCCGTATTATCCACGCTTACACAGTTA GGGTCGCTGGATATGAAAGTTATCGCAGGATTGGTTAAAGCAGTTCCGTTATCCGTCACA GTTACATTCAACTGGATGGTATCATTTATAAGGACATTGGCCGCATCCCCGTTATTGATG GCCAGTGTGTATGTATGCAATGTTTCATATTTCCAGCGGTCGGCAATATTGTTCTCAACA TCGTCATATGTTGTGCTTATTGCATCCAGTGTACAGTTTAATTTTATAAGCCCTTCCTGG GATTTGTCTATTCCTGTAACCTTAAATGGCTGATTGGTTATGTAAAATCTCTCGTTTAAT GCGATATTTCTTGTATCAGGGTTATATTGCACCGTTACGTAAATATTCCCTGAAGCTACC GATATATAATTCCCTGAAGTGATATCGAATACCTTGCTCTCTTCAATGCAGTCAAACCAC TTAATATTGCCCGACCAGTTAAAAGCTATCCTGCAGCTGCATTTTCTCATCCTTGCCCTG AATGTGTTTTCTTCCCTGTCAATCTGGCTGATAATCATATATTTCAAGTTGTTATATTCC ACTATATCCCCTGTCCTGATCTGGCACTTGCACCTAATTATTTTATCATCGTAATAGGTG AGTTTGTCGGCAGCATCCATGATCAAGGCAGCCTCGCCTGTCCCGTTTATTTTAATGCTT TCCCCTTTTTCATAAAGGAAAAAGTCTATCATGTCGTCAATTTTGTTCATATGTTTACAC CTGCCTTTTCAACTTGTACAGGTAAACTTCCATGTAGCTGTCCCACTTTTTGATATCCAT CACCTTGTATTTTTCATTTTCAATTTCCATATAGCTATGTATACTAATGGAGTTTTCAAT ATCACAGAAAACCCTCTTGGTTATGTTTATTTCAAAACCATCTTCAAACATTATGCTTTT TAAATAAGGCTGAACATCAGCATAAATGGATTTTATATATGAATTGGGGTCAGATTTTGA ATATATTTTTATCAAGGTATTATAAAACATATCAGCCTACCACCCTTATCCTTGGAGGCG GAAGCGCAAGCCTTATGGATTCGGGAATGGCATTTATGATTGTGAGGCTTTTCTCCCCTT CCGTTTTCTTTGTTATCCCTTCTAAATCCCTGTTGTTGTAGAGGAAAACTGCAAGGTCGG CAGCCACATCATGATACTGTTCGGGCAGCGCATCTATATTGCAGTAGCCCAAGATAATAT CTGTAGCTTTCTTAATGAAATGGTTGAGCAGGTTGTCTTTCGATGTGTCTGAAACATCCA TGTCAAGCAGCATTTTTACGATTTCAAGCACAGGTTATCCCTCCGTTTCCCTTATTTTAT CTTCTTTTTTGTCCAAATCATATAATGCTTGAATTAGCTGTTCCTTTTTATACCCGATTC CGTTAAACCCACGCTCTTTTGCATAATCCGTTAATTCTTTATATGTCATGTCTTCATAAT TCTTTATTTCTTTTTTCTCTTCTACGGTATAGCCATTCTCCATAAACCAGGAAACAAGGT AAGGGTCATCAGTAACCCCTACCCCGTTTACAAAGTTTACGCCGGCGGATATACCGTTGT ATTGCTTATTTTTCGAATATATCCTTGCCATAGCCAATACCTCCGTCATGCTACTTTAAT GTTCCTGAATACTCCTGCCGCCTTGGTAGCTTTTAATGCAACAGCCGCCACCATTTCCAC TTCTCCGTTCTTTACGGCTCCGGCTGTAGAAAAGTCGGGAAGCCATATCTTCACCAAGTC CTGATTTGCAAGGGATACGGCATGGAATCCATCAAGAGCCAACCTTGCTGCATAAAGGTC GGTAAGACCTGTCACTACATCAGTGCCATTTGGTTTCCTTGTATTAACGATAGAGACTAC AGGGTCATTGCTTCCTGCTTTAGCTCCAAAGTCAACCAGTACAATTCCGTCATAGGCATC TACCTTCCTGCCGAATGCATCCTCGCTCTGAGTGAGGTATCCTGCCCTTCTTGCTACTGC TTTGATTTTAGTGATGAGTTTTGAATTCCCCCCAAGGAATGTCGGCTTCCCGTCAAGATT GGAGAGGAACTCATCCAGCAGGTCAAGGAATTGCTTATAGTTGGCATCTACTGCCGAGGA TGTTGACAGGTCTATATATGCTCCAGTGTTAAACTCTGTGCTGGAGCCTGTGATTGCTTT ATTGAGCCCGTCAAAGGAATTGGCATCCACAGCAGAATCGCCATTGATGATGGTATCATG GAATAATGCCCTTGCTGCTTTCACCTTCTGCTGAACCTGAAGGTTTACTTCATCTACCAA TCCACCTGTGCTTGCGATAACCCTGTCGATCTGGAAGGAACCGCCGAAGGGCTTTAACTC AACCGTATATCTCTGCTTTTCAACTTCCTGCGGGGTATATTCGCTGTTGATTGCCCTGAA AGCCGCTGTCGGCTGTGTGATCAGCCTTGTGTACCCGTATGTAAGTGTTGCGCCGTTTGT CCCAGGGGTAACAGCGTCATCAAAGGGCATGTTGTCCAGTATGAATGAACTTTTCCTGAA TTCATCTATAACTCCTGCCTGGATATCATCCTGTGTGTTTAATTTTGCCTGTGCTAATGT AATCATAAAATCAATCTCCTTTCAAATTTTACTTGTTTTGGCTGGAATAATACTGTTTTA ACGCTTCATTAAGGCTTTTAGGCTGGTTGTCCCTAGGGCTGTTATTCTGCGGCGGATTAT ATCCAATGCTTTTGAGCCTTTCTTCCACAGCAGACTGAACAGAAGAGTTGAATATCTCCT CAAACCTGCTAATATTAGCAACTGTAGCTTCCTCATCCTCCGCAATGAACAAGTCAGCTA TCTTATTGATTGGAAGCTTCTTTTCGGAAGCGATAGTGAGGGCTTTATTCTTTAATATCT CCCTCTGTTTTTCAAGCTCCATCCTTTCAATCTTGGCTGTCAATTCCCGAAGCTGCTTCT TTTCCTCGGATTCTTCCGGATAAAGTTCTTTTATCTTTTTGTCAATCTCTCTTTGCAGGT TGTTGTCCTTCCAGGTTTTTAAACCCTTTTCAAGGTGTTTGTCCTTTTCGCTGTCGAACC ATCTCCTGCCTTCCTCATTTTCAGAAAGAAACTTCTGCACCCCTTCAACGCTCATCAAGC CCTGAAGGTATGCTTTCACCTCATCTGAGGTTTTGTTTTCATCCATGTACTTTTTTACTT CTTCGAATGTCATAGTATATAAATCTCCTTTCGTTTTACACATCTGACCTTTTCGCCCAG ACACGCATAATATTAGGGCAGTTTAACGTCATGCCCAGGACAATCTATTTACCTTCTTTC ATAGCGTGGGCATATTACATCCACACACCTGAAAGATTGTTTGCACTTGTGCCTGCATCT TGCACACTTTTTATGGTACTGGATTTCTCCATTAGCATTAATCCAGAAGCCCATGCCCTC CTTTGCCAAATTGCTCAATCTTGCCACACAAACCGTACCTCCAATCCCCTATAAAAACGG GCAAATTAATTTCTATGTAAAAACAGCCACAAATCCGCTTATTTCAAGCAGTTCATGGCA TTTTTTGAGTTAAATGAAAATATTGGATTTTTTATTTCTGAAAGCATAAAAAAGACAGGT AGTATAATTACCCTACCCAATAAAAATAAAGGCTTAAATTGTTTATTTATACAATAACCT GATTTTGAACCGATGAAATGTTACCTTCAGGAATAGTACCAGACCGTCTTTTTTCAAAAT AGTATTTTTCAAGCTCAACTTTTGGATTTTCAACAAACGGCAGGAGAGTAAGAAGCGTTT CTTGTGAGCATACATCCTTTAGTTTCGTAATAACATCTGCAAGCCCTGCCAAATCGGTAG GAAGGTTCCTTGTAAACTTAACCGCAACATCCCTATAGTCATAGGATTTACCCTCCTTCT TTTTTAGATACACAAACAGGTTCTTGAGCCTTTGCTTGATAACCTTCTCCATGATGGCTT CTCTCATGGCAACCCTATTCTCAAGGTTTAAAAGCTTGTTCCTCAAGGCCAGCGATGATG TGTTAGCTGCCCAGTTCTCATTAAAATTAACCTCGTCCATCAGGTCAAATATTTTTCTTT CAATATTGTCCAGTTCATTTTTAACAAAGCTGTCATTGATATCTTTGATGAGCCAGTAAA CTTTCGCTTGGTTAGGGACCTGGATAATTCCCATAGATTTCATCTTGAGCAAGTCCTCTT CCTCAATTTTAGCGTTTTCAATGACAAGATAAGCATTCCTGTGGTCGGCAATTTCATTGA CTAAATCGGAATTGATGGCATTATACGCATCAAACAAACTGACTACATCTTGGAATCCGC TTTTCCTTTCGTTATTGGCAGGGCAAACTATTACAGGCACTCTGCCGAAGATGTGCTCAT GGCTGCCGATATATTTAAGCTCAGGCCTCGTTCCACTGCTTCCCAATTCATAATGCCGGA TTTCGGAATCAGTATATACATCAAGGTATTTTTTATCATCAAACTTTTTTGTAAAGGTAT GCAAGGCCAGCACTACATTTCTTTCGGCAGTGCCATCTTCAAGAACATAAGCTTCTATAG GTGTCAGAATGGTTGCGCAAAATTCCCCGTCTGTATTGATATAGTTGAGTTCATAAGCTT CGCCATATATTTCAGATTGTTTCCGAAGGTTTATATTATGCTCTTTATCCCAATGGCTCG TATTTCTGTCGATGGCATCTATAATCTCATTATCATCTGATTTGGAAACATAATTGACAG GTTTTCCAAGAAGATAGCCGGTTTCATTATCTACAAACTTACGTGGAAAATTGAACACCA GCTTCATGTTGCTCCTGCTATCCTGCATTTGATAGTTCTTTAGAATTGAGTGGTTGCCTT CATAGTAGTCCTTGTATCTCTGCTTATCTTTGGCATTTTTGTTGAGTTCATTCAAGCACT CCAGTATTAAGTTTTCATTTATGATCAAATACATCACACCCTTTTAAGTAATCATAAAAA TAGCCAATTCAGTGAGATGGCATATATTTTTCTAGTAATTTGTCTAAAGCTATTCCATCT ATTAACTCCAATTGTTTCCCTTTAGAAAAATTAATTGCACTTGATGTAAAATAACTATTA GTTATCAATATTCCTTTATTTGCATTTTCCGACATAACTACACCATATAAATCTCTTATC ACAGGCTCTCCAACTGGACCGCTCCATCGTTTACATTGAACCACTATTTTACCACCAAAA ATTGGCTGTGGATTATAAGCAATTAAATCTATTCCCCCATCTCCCGAAACTTTGGTAATT GAAACATCGAAACCCATATTTTCTAATAGCTTTTTTATTAGTGTTTCAAATTCTTCACCA GATAAAGTTGCAATTTCTTTATCATGATAGCTAACATCAACATCATCTAAATGTTTAAAA TAAGCTAAATTATCCTCAACAAAGTTTACATACTCTATCATGCGAAAATAATCCTGCTCT GCTATAGAGAACTTCAAGGTATACTCGTTTCCCAAACTTCCTGTTGCCAAACCAATATCA ACTATGCATTTGCCATCTTTTTTAGATAAAAGAATAATTTCCGGTTTTGTATTATAAAAT ATACACTCATCTTCATAATCGTCATAGCATATACGCCAAGCTCTTCCATATATTTCGATT TGGCATTTATATTCTGCTTTCATATATTCATCTAAAGCCACTGCTTCTTTTATAGAGAAA AAATATCTTTTTCCTCTATCTTCATTAGTTATTTCATAGTAGTTATACAAATCCAACACC TTCTTTATATAAAAAAATATATGTTATGCCTTATTATACCTCTACTTTATGAAATTTCTA CCTAGAACAATAAACTCCTATCATAAAACCTTATACTCTTAACCCCTTCTATCAACTGTA CTGCACCATATAATGAATCAGGAGCATCATCATATTTTGCCGATTTATTATAATCCTTCA CCTGATTATTATACCTTATATTGGCAGGATTGAACAGGATGTGCCCTTTTTTAACTTCCG GCTCAAGGGAGATTATCCTCTCATGTTTTTGCCCCCTGCTTATCATTTCATCAACAGGAG TATATATTTTATTTTTCCAGAGTTCCTCTTCAAATTTCTGCTTCATATAGCTCTGTGCCT GTGTTGTCTCAAAACCAATCTTTTCAATGGGATATTGCTTAAGCTTTTCTATGGCAATCT GGAACAGGTCATCGGGAAGCATCCTGTATATGCAGCCATCCACAACATATTTCTGCTTTG TTTTTATGTGCTTTCCAAGGACAGTGATTGCAGAATAGTCATTCCTCTTTCCGGCTTTAA TTGCAGGGTCAACATACATCACCAATTCCATTTCCTCAAAGTCAGGAAGCCTGTCCCAGT ATTGAATATCCTGAAATATGTAATCATCCGTAGAACGTGGGTCATTCTGCATTTCTTTAT AAAAGGATTTGTCTCCCATAGCCTGTTTCTTGCACATAAGGTAATAATAGTCCAGATATT CCGGCCACAGAATCTCCGTACCCTGTAGCATTTCCTCCTGATGGTCATAAAAAAAGGACT TGGCAGTTTCAATCCTGTCTAAGTCCTGAAGATTATTATATATTGATTCCCATTCGCTCC AAAGGTCATCTCGTTCTGCAAAACTTATAACTGCCGATTTCTTAATACTTCGGACTCCTG GGATTTTCCCTTTCAGAAGTTCAGCCATCAGGTCTTCCTCATGGAGAATGGTACCGACCA CAAGTATATTTGTATCCTTTGTTCCAATAGGAATGACAACATCGGTAAATGTACTTTTAA CCTGTTCACGCTTAGCTTCCGATTTTGCGGTATCATCTTTGAGTAGGTCATCCAGAAGTA CAAGTTGGGGTCGATGCTGCTTGAAGTGGATTCCCCTTAATGAGCCATCAATCCCTCGAA TCATGATACAGGCGTCCACTCCACCTCTGCCCCTTATCCATATCTCGTTATTATTCCAGC GGTTGCCCTTATAGATTCCGAAATCCTCAATCAATAACTGATTATTCTCAAGCTCATCCT TAATCATATCAAGGAACGGAAGAGCAACCTGCTCTGTTGCCGATATAATCAATGTAAACT GTGATTTATTATATAAAGTTGAATACAGCGGGAATAAAAAAGAGTTGATTGTACTTTTCC CATGCTCCCTTGGCAATCCAAAAGCTTCTATCAACCCTTTATTGTCCAGCATATATTTTA ATTCATCAAATAGCTCTTTATGAAACTGCCCAAATCTTCTATCAAAGTATTTCGGGAAGT AACACAAGGCAAAAAATTCTATATCCATCTCGCCAAGCAGCTTGCGAAGCTCTGAAAATG AAAACTCCCCGACAAGTTCTTCTATCTTGTTCGGGGAGAAGTATTTGTTCAGATATTCTT TTAGCAGGAGGTTTTGGCGGTGATGGTCTTGTTGTTGTGGAAGTTGCATATAGCCTCCTT TCATCAGTTTGTGATATATTATTTATATGACATTCATAAAATTAGTAGAGGGGTACGGAA GTATGGAGAGCTTGTGGAACAGCTTATTATGCTTTATAAATTCGAATAGTGCTTTATGGA GTTTTCTTGTAACTATTGCAACGATAGTCTATGTAATATTAACTTACCGCTTATTAAGAG AAACTGCTAAAGCAAGAAAACTGCAAAGCCAGCCATACATTATTGCTGATTTGGTTCTTA AAGGAATTTCGCTAAAAATGATAGTAAAAAATATTGGTAATAACTGTGCTTTAAATGTAA AAGTCGAAGTTGAACCTGCTATTAATAATCCATTTTCAAAAATCGACTTTCTTGCTCCAG AAAGAGAAATCTCAAATGTTATTAAGTATATAACCCATGGTGAGGCATTCAATCTTGAGA ATTCAAAATACAAGTTTAAAATTTTTTATGAAGACCCATATAAAGAAAAATATAATCATG AATACTCTATTGACATTTCCCCATTACTAAATGCTACAAATTATAACGAATCTGAAAATA AAGAAATTGTAGACAAATTAAACAAGATTTTACCAAAATTTGATAGTTTAAAAGATGAGC TTCATAGCATAGCCGATTCCTCCAAGAAAATTGCTGACTATTTAAAAGACATAAAGTCAA AATTTAAATAGAGTCGAATTGTTTTAATATTGTTATAAATGCTGTTTTAAGCAGATTATT TATAAATTCAGTATCTGTATTATTTGATTTATTTACAGTAAAGTCAATATTGATTCTAAC ATAATCATCTTCATTTAAAGGTAATACATATGTTAAACTCTGAGGGTATATTTTCACTTC TTTTCACCACCTATTAAAGTTTGAAATAAATTTCATCAAAAAAATTTTCACGCCATTTGC TGTCAAGGCAATTTTTGCAAACAGAAGCACCCCTCCCTTTGGAAAGGCGCATGAATAGAA GGGCTTGCTTACCATTCCAACGCTTCCAAGGCATCTGCTTTGTCCTGCTCGGTGGTAACG GTATAAAGGTTTGTAGTCATGATATTCTCATGGCCAAGTATCTGCTGAATAGTTGTAATG GCTGTCCCTTCCTTGACCAGCTTATATCCAAGCGTGTGCCTCAACTGATGCGGAGTAACT TCAACATCCACTCTCTTGCCGTATTTCTCAAGAATAAGGTTGATTGCGTTCCTCTTCAAA GCCCCTCGCTGGCCTATTAAAAGGAAGTCACTGTCATCTTTAGGTCTTACTGCAAGATAA TCCTTAATTGCTTTTCGGACATCCTTGTTCAATGGTATTGTTCTGTTTACGTTTCCTTTG CCTATAACTCTCAAAGAGCCTTTACGTTCGGATATTTCTATATCCCGAAGCCTTATGTTG CAGAGTTCACTCACCCGAAGCCCCGTTCCAAGCAAGATTTCAATGATGCATATATGCATT TTATTCCTGTTTCTGTGTATCTCGGCTCGGAGTTTCCTCAACTCCCTTTCCTCCAAGCCT TTATACTGGCGGGCATCCCGATTCTTTACTGGTTTTATTTTTATTTCATCAGGAGTTATT CTGCTTTCATAAAGCCACTTGAAAAAGATATTGATACTGGAAATCTTTCTGTTGACTGTA ACCACCGATTCACTCGTATTGAGCAAATGCTTCTTATATTCAATGGCATCAAGTTCAATC AGCTTATCAAAACCGCAATCTGTCCTGCTGCTGTACCAATCAATAAAAGCCTTGCTGTCC CTGATATAGCAGCTAATAGTATTCCGGCTGCGTTCTTTACTTCTCAAATATGCTTCAAAA CCGCTTAAATCAAGCATATAGGCACACCCTCCCTTTATTTGGTGTGTCCATATTACCTCT GTAATGCCTTGAAGTCAACTCAAGACATAATCCTAATTATGCATTGAAATCAGGCTTGTT TCAGGCATTTTTATATATAAAACCGGCATTTATCCCGGCGAAAACTAACGACATAAGATT ATTGAATATACTCATCATCGGTTCTCGGCTGCTCATCTTCGCTGTCAATAATATCATCTT CTGTTTCAAGCTCACCGTTTATCATTTGCAGGAACAATTTCTTCCTTGCTTCCTCATTCT GGCTTGTATCCAATATGAGTTCCTTCTTATCGCTCCATTCCTCTGGCATACGGTTACGAA GGAAAAACGCTATTGCCTGAGCCGAAGGCGGCTGATGTCGCTTTATCTTTTCAATCTTGG TGCGCTTCTTGCCATTTTTATCTTCTTCCACAATGGTCTTGAGTTCCTCATAGTCGTAGC CGGTGCAGAGCTTCAATAATGATTTTTCCACTTGATTACATAACACGCTCCTGCCCATGT TTACAAGTTCCATGAGGATTTCATGCTCTCTGCAATAACGATACCAAGTATCAGGAGAAA TCGCAAGTTTACTGCAAACCTCTCTAACTGTCGCCCCATTAACCAGCCAATCCTTTATGT CAGACAATTTCGGCAGAATTACCGTATTCCACTTATCATCCTTTTTTAATATTTTTGCTA ATTGTGGATGCTTTTTTGTATAATCATCCAAAGCCCACAGGCTAATATCAAGCAGCCTTG CAATTTCAGCTTTGGTGCATCCTTCATCAACCCACTTTTCTATCTCATCAAGTCTCGGTT CAACGTGCGTGTAATATTTTGTAAGCACACTATTCGCCATATTTACTTCACCTCCTCAAA AAAACAAAGCTTTGTTATTGATTCAATTACTGAATCTTATATTTTATCAATTAACTTTGC CACTTTGATGCCATCAATAAATCCTGCTTTATAAAGCTCCTCTTTGATAATTCCAGCCTG TGCATTTACAGCATCCTCATATTCAAAAAACATTGAACTCCGTTCATCTCCGAGCGCATC AATAATTTTCCTTTGAAGGTCAGATGATTTAATGCACAGCTCCTTATATTCCTTATTGTT TTTACCAAGAGCAACACACATCTCTTCCGACCTTTCTTCTATAAATTCTCTGAAATATTT AATGATTCCACTCATACAAACAACCTCTTTCCTTAATTTGGTTATCACTATGAGTATCCA TGTTAACTCTCCGTCTATGCAATTGCAACTGGTGTTTATTCAATAAGAAAAGAAGCCTCA ACCGAAGCCCCTTATCCCGGCAAACGTTATTTCAATAACCCGATCTGCTCATCAAACTCC TCAATCAAATGCTCATCCAAAGCCCAGAACCGAACCAGTTCAACGTACATATCCCTTATC TGCCTTAAATCCTCCTGGGCATCCACTAAGCCAAGCACACATATTTTCTCATTTGCAGTT GCCAGCAAGCCCTTCAAGGTTTCCCTTATTAAGTTTTCAGTTCTCATCTCTCAAAATCCC CTTTCCTTATTTGGTTAGGTAGTACATTACCTCAAAACCAGCCTGAAAGTAAAGTTGAAA TTATATCCATTTCACCCATTTATACCTTTGCCTATAAGCCGGCTATTAACTGCAAACCCA GCAACTATACCACCAATATGAAAATATCGCCTCACAAGCCCACGTGAAGCGATATTATAT CGATAGTCCGTTATTTTGTTGCAATATCTACTTTTTTATCAGGCTTTTTGCCGCTTCTGA AGGCAGAGTTCCCTTCCAGGTTTTCAAGCAATATTTTCCTTGTATCCTTGTACTCATCTC CCACCATACCAAGTCTAATAAGGAAAACCCTGAAGGTAAACTTGTCGTTATCGGTATCCT TGGCTTTAGCGGAAACATGCTTTAAAGTTTTGGCATTTTGGTTCAATAATGCTACAAGCT GGGTATAGGCTTTTACCTTTTCAGGATTTGCTTCCCCTTCTAAAAACTTGAAGGTAATGG TGTTGTTATTAAAATCAAAGGCAATCCCTGGGCAGCGTTTTTCTCCAATACCCTCTATGG CTGTTTTTAGATCCTCTAATGTTTCCGTTTTGGCTTCATTGATACCTATGCAAAAATCAT CCTCAATAATATTTGCTGTAAGCCCTAATGATTTCTTGATAAGACCCTGTTTGCTGTAAA TCATATTGACCAGATTTTTCAAGGAAATGCCTGTATGGCCTTCCATTGGAACTGCAACTT CAAAGGTTCCTGTCTCTGTTGCTGCAGGTTCGCTTGATTTCTTTTCAATCTCTTCATTTA ATATACTTTCAAGCTCTACTTCTTTTCCTTCCGAAGTTGTAATCTTCCCTGCTCGGTCAA TTGTGTAAGTTTCTTCCGCTGTTTCAATCTGATAAGCGAAACTCGGCGCTCCCATGTACT TTGGCTCAACTCCAAAATGTTCTCCCAATGCCTTAACGATTTCTTTTCTTTCCATAATAT AAAACCCTCCATTTCATGATTTGTGTACTACATTAATCACTCAAAAAGCACATTAAATCA AGTAAAATGAAGGGTTTCAGACAATTTTGCGTTGGCTTTGCTGTAAGGCTTGATATTTTT AACTTGGATAAATTACTCCACTTATAAGAAAAAGCCCTGTTTCCAAGGCTTTTACAAAAA CACAAGAGAATTCGTTTATCTACTTTTTCTTTTGGCTTTGATACAGGCTTTCTTTAAATA CTCTTCATCCAGTCCTGCCGATTCATACCCCTGCCTTATGGTTTCATAATACCTTCGGCT TGGTGTCCCGATAGGCCTGCCTTCATTCATAATATAGGCCATCGCTTCTATAGCTTCACT CTCAAATATTACAGGTATTATTTCCTTTCGGTAAAGCCAGGGATACCCTTCATATCGGTC AAGAGCCACTTCATCTGAAGGTTCAATCTCCCAAAGCAATACAGGCACTTCTCCCTTTTT ACAAGGCTCAATTGTTGCAACAGCGCTGCCATCTGCTCCCCGAAAAGTCAACTTCCAACC TGCAATTTTCCCTACACCTTTTACCCTTGCTGTCGGGCATCTGTAAGCCATCTGCTCAAG ATTCATATTTGAACCATAGGCTATATATAATTTTGCCATCTTCAAAACCCCTTTCATATT CTCAACTTTATATAAGGGGTGTTTATCGCACCCCTTGTCTTTCCCTTCAAGCTGCGTGTC TCCAAGCTATATCCCCTTCAAGGTTTGCCAGAAGGTGTTTTCTTGCTGTTGAAAATTCAT TACCTATCAGCCCCAACCTCAAAAGCCAAGTCCTGAAGGTGTATTTCGGATTATCGGTTT CAGTTTTCTTAGCGGAAGCACTTTTTTGAATTATTGCTTGGTGATTTATTGCCAAGCAAA ACTGTATATACGCTTTGATCTTTCCTGCGTGAGTGGTGCTATTGAAAAACCTGAATTCAA CTGTGCCCTTGCTAAAGGTTGAGTGGAGGTTCAATCCGTGGTATCTGCTATCGTGGTAAT GAACATTTCTTGAACCATAGTAGCCTTCATACCAAATATCCGCAACCTTTTCTATTGTCG TGGGTTTTGCTTTGTTTAGTTTTTCAATCAAGGCATCCTTCACCTTTTTGCAATACCGGC TTTCTCTTGCGTAGTCCACCCGCAAGGCTTTATAAATCAAATCCTGCTTACTTGCCATTA TATTTACCAAGTTCCTTAAAGTCTTTGCGTTGTGGTTTGAAGCATCAATATGTATATGAA TGCCACAGCTTGAATTCGCAATTGCTCCTGCTTTTCTGAGCCTTCTTACTAATTCCTGTA TGGTTTCAATATCTGCGTATCCGCACTTTGGGGAGACCACTTCAACCTTGTAATTATCAT CTGCTGTAACCGTTCTCCCTGTTACTTTTCTTTCAGGGCTTATGCTGCTGTCCCTCATAA CCTTCCAATCTCTGCCCTGTGCATCCTTAACCCTGTAGGTGTAATATGCTCCACCTTCGA AAAACGCTGTCGTTCCAAAATACCCTGCAATCTCCTTTGCTGCCTGTTCCCTTGTAATCC CTGTCAATTCAATCTCAATCCCGAAAGCCTGATTTTTCATAACCTTCAACCTCCTGTGTT TTTCCGTTGTACACATTAATCACTCTAAAAACACAGTAAGTCAAGTTAATTCAAGGGTTT CAGGCTTTTTTTATCTTTTTTTCATCTTTTCTAAAACTGTCAATTATCCTAAAAAATATT CGGACAGATAGAATGAGAGAAGACGATATTTGCTGACAATATTAGACTGCAACCTGCTCA CGCTTTATGTCCACATACCTAATCTTCTCTCCATCCCTCAAAACAAAAACATCAGCATCG CTGCCGACTTTATCAATGTATCGCTTTACAATTACATCTGCATATTTTTCATCCAATTCC ATCATTCTGCACCTTCTATCCGTTTCTTCACAAGCTATTAGTGTAGTGCCGGAACCACCG AATAAATCAAGCACAATATCTTTCATGTTGCTGCTATTCTTGATTGCTCTAACAACAAGC TCCACAGGTTTTGTTGTCGGATGCAATTCAGATACTGATGGTCTGGGAATATCCCAAACA TCACATTGCTGTCTGTCAGTCAATGGATGAAGCCTTGCAGAGCCATCACTCCAGCCATAC CATATTGGCTCATACTTGGTATGATAATCCTTTCTTGAAAGTACCAGCCTATCCTTATTC CAGATTATTGTTGATGACCAGTGGTATCCATTCTCTTTCAAAGAAAGCATCAAGTTTCCC CACTCCTGAGCAGACATAACAACATAGGTCATGCATCCAGGCTTAGAAAACTTATTCATT ACCTTAAAGGCAGAATCCAAAAACTTTTTAAATTCTTCAGTAGTCATTGAATCATTGAGA ATCGTCCTTTGTTTCCAGCTTGGATGCTCTGTTGCGCCGTAATTAACATTCCAGGGCGGA TCAGTGAATACCATATCTGCGAAATCTTCCCGCATTAAAGCCGCAACATCGCTTTCACTG CAAGCGTCGCCACACATTAGCCTATGTTTACCCAAAAGCCAAATATCTCCCCTTTTTGTT ACCGGCTCTTCCGGCAGTTCAATATCAAAATCATCATCTTTATAATAATCCCTTTTATTC TCACTTATATATTCGTCCCAGAGCTTCTCTGCTTCAGAAAAATCAAAACCCGTGAGCTCA ATATTGTAATCTTCTTCCTTCAATTCATCCAGCAGCTTTGCCAGTGACTCAAAATCCCAT TCGCCGGTAACCTTGTTAAGAGCTATATTCAATGCTTTCTCTTTGGTCTTGTCAATATTG ATTACAACGCAGTCTATTTCAGTATAACCAAGTTCTTTAAGTACCTTGGCTCGCTGATGG CCCCCGATAATGGTCATATCGGAATTTACAATGATCGGTTCACAGTAGCCGAATTCAGTG ATGCTGTTTTTTATTTTCTCAAATTCTGCATCCCCAGGCTTCAAATCTTTACGGGGATTA TATTCTGCGTGTTTTAATCTGTCTATATTTATCTTTCTGAATTCCAATCCAATTCACCAG CCTTTCAATCCCAAATGATATTACATAATAAACCGAAAACAAAACACAAAGTCCATATAG CCCAACACAGAAACGCATTGTTTCTTCTGCAATTGTTTTTATCAAATCCATAGTCAGCAT CCTCCTTAATAAAAAGTAGAAGGAGCACCGACAGCGATGCTCCAGCTTAATAAATATTAA ATTGCTTTTAATAAATCTTGAAATTTTTCTCTGTAATTATTTAATTTGTTAATTTCTCCT TTTGTGCTTTTATAAATATCTAAATTCCGCTTGTTCTAACGGATAATTTGAAAATAAAAA AACAGAGCAGTTATTTCTCAATAATCTTGCTCTGCCTACCGCCTGTTCCAATTCGCTCTC TATTAACCACATCTGTAAATTCCGCAAATCTTCATTTTTATATGTCATAAACCAGAATTT ATAGCCGTTTCGTTCAATCTCCTGGTATTTCATCTCCGTATCCGACATATCAATGTCAAG AGCCACTGCATACATTTTGTAAACAATCTCATGCAAATGCGGAGTGCCCACAACAGCTAT ATCCTGTCCCTCAAAACAATTATGTCCTTCTGTGCTTCCGAAGTTTAAATCTTCTTCATT TTCCTTCTTTGCTTTAAAAGTAATTATCGGTATATCTCCAACAATGCTTTTTGCAATATC CATTAATTCGCTATCATTTTCAATACACTGCCTGCTGTAGCTTCTTGCAGGATATTGAAT AAGTTTCCCTTTATATTTCGCTTTCTTGCAATAATGAAATTCCACTCTCTCCCCAAACAT CCGCTTATATATTTGTTCATCTGCCGTAGCGCTCATAATAATAATTTTCTGCTTTGGGAG TTCGCGTTTTACAAGATACTGAATCATATCACCATCGCTGTAATAACCTTTTACAGCCAT TTTTTTCTTGTCAGTATTGTACCTGTAGGCAACACAGCAATTAAGAAACCCTATTACATT GCTGTTGATTTCACTTTCATAATCTGCAATTTGCTTTTCAAAGTTTAACATATTATTAAC AGAAATAGGATTCGTTTTTATAAATGTTTGATAATCGTTATCTTGAAATATGTATTTGAA CTTCTGGTCTATCCCAAGCCTGTCCATATTTGATATGTATTTAACCTGTTGTATTTTGAG CAGATCTTTTATGCTGACCTTATTAACCTGAAGCAATGTTTTTATGATATCTTCATCAAT TAAAATATTATGGGTTTGAAATTGTTTGGATTTAAAATATAGAAGCCTTGAATGGGTGGT AATGATATGCCCTTGAAATGACTTTACTGTTTCCATCTGTTCAATATATTCAAGCAGCTG CGGCAGGCCCTTTTCTTTGGCAGCCTTCCTGATATATTTCCCCGCTGTATAAGTAGCGCC AATGCTATATAAACGCTCAATTTCATTTTTTATATATTCTGGAATATCTGAAGGCAAGGT TGGTGTCATAACTACATGGTAGCCGGCATCTGTGCATTTCTTATATATTTCCTCTTTCAG TTTATTTGTTGGGACTGCAATTATGTAAGGCCTGTCCGCTTTATCCAAACAGCCGATATA TGTACGGGATTTTCCAATTCCTGTTTGAGCCTTTATTACATGGATTTTATCGTCCTTTAC AGCTTGCAGCTTAACAAATGTATCATGTAAATCCTTTTCAGCCTCGCTCAGAGTCGCATA CTCATAATTATTGGATAATTTGACAATTGTATTTCGTCTGGTCTTGGCTGTCATAATCAT ATTTTTTGCATGATTGCACTCTTCTGCATAAGGGCAGAAATTAACACATCGTTGGGGCAA ATAGTCTTGCTTCTGGATATAGTTTATATAGTATTCCCAATCTTTCTCCATATAGCTTTC ATACTGTTCATTAACCTTGTCGGTAAGTATCTGTATGAATTTGTCGCCGCCGCCTTTTAT CTGGCACAGGTTTGTTGCCATTCCCCATAGCTCAGGATGGTAGCACCACCTTTTTCCTTC GGCAAATTCACTAAATAGCCTGCATGCCTCCTTTAACCGATCGAAGTTGAAATTTCTTAT TAAATCCCTTTTGCCTGTCTTTGTATTTACTGTTTCATATATGACAACTTCTTCCTGGCC TTCCCCTGTCTTGACAACCTTGGTTTTTTTTATCTTATTAGTAAGGTAAATAGCATAATA AGTTTTTGACGTTTCGGGAGCATTTCCTTTATTATTATATATAATAGGACTTGCCCCCAG GACGTCAGTTTTTATTTCTGAAATATCTTCCTCCTCTAAAATCTCAACTCTTGGAAGACT ATTTTTTAATTCAATACCCACATTTTCTGCATATTTCTTAATTTTTCTTGATACATTGTT GTTCCCATTATCAATATCCCTGTAATACTCCACAAGAGCAAGCATCAGGTCACTGATATT AAACAAAGCTGTGTTGATATTTTCATTAACATATATAAGCCCCTTACCACCAAGGAATAA TCTGCTGCAGTCTTTACAGTTTGGGTCACACTCAGGAAATATCTCCATCAAAGCTATCTG TATTACTCTTGCTGCTCTGTCACTGGTTATTTCAACATCACAGCATAAAGCTACCCTGAA CTTGCTTTTATTCATACTGGACAAGGTTTCATATGCGAATGAAATGGGAAGCCTGTATTT TGACGCTCGCTCCTGCACTTCTTCCCATGTAATTCCTTTATCAAAATCAAGCGCAAATAA TTGCTGGCTTTTGAAATTAGAAATTTTCCTTTTGCCATCCGTAAAAGTTGCCGGACACCA GCTGAATCCTCTTTCCCCTATGATTTCTGGAAGCCTTTCCAATTCAGCATATCTCGGATA AGATGCTATTCTATTGCTTATTTTGATCATTGTTGGCTTGTCTGGTTTTTTAGTGAATCT TTTTTCATCTACACTTACATTGATTTTTAAAGTATCATCAAAATCTTCATACGCTATTGC ATTTGCAACGGTCAA
Region Details
| Region | 1 |
| Region Length | 20.1Kb |
| Completeness(score) | incomplete(40) |
| Specific Keyword | lysis,portal,integrase |
| Region Position | 19111-39225 |
| # tRNA | 0 |
| # Total Proteins | 20 |
| # Phage Hit Proteins | 15 |
| # Hypothetical Proteins | 4 |
| Phage + Hypothetical Protein % | 95% |
| # Bacterial Proteins | 1 |
| Attachment Site | yes |
| # Phage Species | 13 |
| Most Common Phage Name(hit genes count) | PHAGE_Rhodoc_REQ3_NC_016654(2) PHAGE_Brocho_BL3_NC_015254(2) PHAGE_Clostr_c_st_NC_007581(2) PHAGE_Clostr_phiCT453A_NC_028991(2) PHAGE_Clostr_phiCT9441A_NC_029022(2) PHAGE_Lactoc_28201_NC_031013(2) PHAGE_Mycoba_32HC_NC_023602(1) PHAGE_Pseudo_H70_NC_027384(1) PHAGE_Bacill_WBeta_NC_007734(1) PHAGE_Strept_SV1_NC_018848(1) PHAGE_Staphy_B166_NC_028859(1) PHAGE_Strept_315.5_NC_004588(1) PHAGE_Bacill_Stills_NC_028777(1) PHAGE_Mycoba_Charlie_NC_023729(1) PHAGE_Staphy_96_NC_007057(1) PHAGE_Bacill_BalMu_1_NC_030945(1) PHAGE_Staphy_phiJB_NC_028669(1) PHAGE_Gordon_Wizard_NC_030913(1) PHAGE_Bacill_phi4B1_NC_028886(1) PHAGE_Pseudo_DMS3_NC_008717(1) PHAGE_Strept_EJ_1_NC_005294(1) PHAGE_Lactoc_98201_NC_031064(1) PHAGE_Brevib_Sundance_NC_028749(1) PHAGE_Bacill_G_NC_023719(1) PHAGE_Gordon_Twister6_NC_031052(1) PHAGE_Strept_phiNJ2_NC_019418(1) PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007(1) PHAGE_Clostr_phiCD119_NC_007917(1) PHAGE_Arthro_Laroye_NC_041947(1) PHAGE_Gordon_GMA1_NC_030902(1) PHAGE_Deep_s_D6E_NC_019544(1) PHAGE_Bacill_Gamma_NC_007458(1) PHAGE_Strept_T12_NC_028700(1) PHAGE_Clostr_phi8074_B1_NC_019924(1) PHAGE_Pseudo_MP38_NC_011611(1) PHAGE_Brevib_Jenst_NC_028805(1) PHAGE_Strept_SF1_NC_028807(1) PHAGE_Cyanop_S_TIM5_NC_019516(1) PHAGE_Staphy_StauST398_3_NC_021332(1) PHAGE_Bacill_Stahl_NC_028856(1) PHAGE_Lactob_Lj771_NC_010179(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 10% |
| GC % | 38.34% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|SBHL01000060.1| Hungateiclostridium thermocellum strain PAL5 PAL5_contig_44, whole 44176, gc%: 37.90%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 22 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(19111..20730) | PHAGE_Lactoc_28201_NC_031013: protector from prophage-induced early lysis; EPD62_10400; phage(gi100001) | 3.24e-31 | Showinfo_outline |
| 2 | 20812..20823 | attL | 0.0 | Showinfo_outline |
| 3 | complement(21012..22160) | PHAGE_Clostr_c_st_NC_007581: hypothetical protein; EPD62_10405; phage(gi80159847) | 2.26e-17 | Showinfo_outline |
| 4 | complement(22165..22440) | hypothetical protein; EPD62_10410 | 0.0 | Showinfo_outline |
| 5 | complement(22442..22741) | PHAGE_Clostr_phiCT453A_NC_028991: RecA-like recombination protein; EPD62_10415; phage(gi100035) | 4.34e-07 | Showinfo_outline |
| 6 | complement(22745..23041) | PHAGE_Rhodoc_REQ3_NC_016654: hypothetical protein; EPD62_10420; phage(gi372450011) | 3.45e-08 | Showinfo_outline |
| 7 | complement(23056..24036) | PHAGE_Gordon_GMA1_NC_030902: hypothetical protein; EPD62_10425; phage(gi100006) | 9.12e-91 | Showinfo_outline |
| 8 | complement(24059..24673) | PHAGE_Deep_s_D6E_NC_019544: scaffold protein; EPD62_10430; phage(gi423262331) | 5.72e-38 | Showinfo_outline |
| 9 | complement(25097..26398) | PHAGE_Clostr_phi8074_B1_NC_019924: putative phage portal protein; EPD62_10435; phage(gi431810361) | 2.05e-54 | Showinfo_outline |
| 10 | complement(26439..27200) | PHAGE_Clostr_c_st_NC_007581: putative restriction endonuclase; EPD62_10440; phage(gi80159877) | 4.69e-10 | Showinfo_outline |
| 11 | complement(27272..28822) | PHAGE_Bacill_BalMu_1_NC_030945: DNA primase subunit; EPD62_10445; phage(gi100025) | 9.71e-95 | Showinfo_outline |
| 12 | 28953..29561 | hypothetical protein; EPD62_10450 | 0.0 | Showinfo_outline |
| 13 | complement(29859..30707) | PHAGE_Mycoba_32HC_NC_023602: integrase; EPD62_10455; phage(gi589893371) | 1.08e-14 | Showinfo_outline |
| 14 | complement(30869..31570) | PHAGE_Clostr_phiCT453A_NC_028991: DCTP pyrophosphatase; EPD62_10460; phage(gi100024) | 6.88e-14 | Showinfo_outline |
| 15 | complement(31627..31905) | hypothetical protein; EPD62_10465 | 0.0 | Showinfo_outline |
| 16 | complement(32037..32237) | hypothetical protein; EPD62_10470 | 0.0 | Showinfo_outline |
| 17 | complement(32441..33205) | virulence-related protein; EPD62_10475 | 0.0 | Showinfo_outline |
| 18 | 33371..33382 | attR | 0.0 | Showinfo_outline |
| 19 | complement(33406..33849) | PHAGE_Bacill_G_NC_023719: gp514; EPD62_10480; phage(gi593777969) | 1.00e-17 | Showinfo_outline |
| 20 | complement(33917..34810) | PHAGE_Arthro_Laroye_NC_041947: hypothetical protein; EPD62_10485; phage(gi100098) | 1.60e-14 | Showinfo_outline |
| 21 | complement(34992..36257) | PHAGE_Strept_EJ_1_NC_005294: transferase; EPD62_10490; phage(gi39653711) | 5.34e-67 | Showinfo_outline |
| 22 | complement(36520..39225) | PHAGE_Cyanop_S_TIM5_NC_019516: hypothetical protein; EPD62_10495; phage(gi422936297) | 2.02e-08 | Showinfo_outline |
Sequence
>complement(19111..20730)
HungateiclostridiumthermocellumMAANTAVKKIRKIEAKPVQVIKGLPENAKTRVCAYCRVSTDNKEQESSYESQVFYYTNYINSRSDWTLVDIYADDGISGTSTAKREDFKRMIQDCMDGKIDMIITKSISRFARNTLDCLDYVRRLKEKGIAVFFEKENINTLDSKGEVLLSILSSLAQDESRNISENTRWGIVRQFEKGRVLVNTTRFLGYDKNEAGELIINEEEAKIVRRIFREYLEGKSYNAIAKGLMKDGIKTVTGNTKWWDSTISGILENEKYYGDALLQKTITVDFLRHKRVDNKGQAEQYIIEGNHPPIISKEIFDRVQAEKARRAAKYNNVEGDRQKYSNKYPFSGKVFCGNCGNIYRRRQWNSNNPSRKFVWQCKTYIMNGKKACAAKAVDESVLKDAFVRVFNQLYENREGFIKTLIENIEKVFLHKPSDREIEALENKIEELKTELKRLIRFQTNNGMDDEVYREEYKRISDELEELREKRAEVDKDSILKDSLKGRVDEIIEVIKGRQEALEEFDEGIFNALVEKIEVVSPTHFVFELKSGARVEERI
Sequence
>20812..20823
TTCCAAGGCTTT
Sequence
>complement(21012..22160)
HungateiclostridiumthermocellumMNKIDDMIDFFLYEKGESIKINGTGEAALIMDAADKLTYYDDKIIRCKCQIRTGDIVEYNNLKYMIISQIDREENTFRARMRKCSCRIAFNWSGNIKWFDCIEESKVFDITSGNYISVASGNIYVTVQYNPDTRNIALNERFYITNQPFKVTGIDKSQEGLIKLNCTLDAISTTYDDVENNIADRWKYETLHTYTLAINNGDAANVLINDTIQLNVTVTDNGTALTNPAITFISSDPNCVSVDNTGKVMGIALGQAVITAKLTYHDTVADSITITTVETLAHNYSITITGSSTVKLGQSQSYVAHIYDNGNEVFDKSVAWSIRNQDGTSTPYASITASIGNSATVKAASSSAYLNKYVVLTATLSDDSTVFKEFNIQIKSLF
Sequence
>complement(22165..22440)
HungateiclostridiumthermocellumMFYNTLIKIYSKSDPNSYIKSIYADVQPYLKSIMFEDGFEINITKRVFCDIENSISIHSYMEIENEKYKVMDIKKWDSYMEVYLYKLKRQV
Sequence
>complement(22442..22741)
HungateiclostridiumthermocellumMLEIVKMLLDMDVSDTSKDNLLNHFIKKATDIILGYCNIDALPEQYHDVAADLAVFLYNNRDLEGITKKTEGEKSLTIINAIPESIRLALPPPRIRVVG
Sequence
>complement(22745..23041)
HungateiclostridiumthermocellumMARIYSKNKQYNGISAGVNFVNGVGVTDDPYLVSWFMENGYTVEEKKEIKNYEDMTYKELTDYAKERGFNGIGYKKEQLIQALYDLDKKEDKIRETEG
Sequence
>complement(23056..24036)
HungateiclostridiumthermocellumMITLAQAKLNTQDDIQAGVIDEFRKSSFILDNMPFDDAVTPGTNGATLTYGYTRLITQPTAAFRAINSEYTPQEVEKQRYTVELKPFGGSFQIDRVIASTGGLVDEVNLQVQQKVKAARALFHDTIINGDSAVDANSFDGLNKAITGSSTEFNTGAYIDLSTSSAVDANYKQFLDLLDEFLSNLDGKPTFLGGNSKLITKIKAVARRAGYLTQSEDAFGRKVDAYDGIVLVDFGAKAGSNDPVVSIVNTRKPNGTDVVTGLTDLYAARLALDGFHAVSLANQDLVKIWLPDFSTAGAVKNGEVEMVAAVALKATKAAGVFRNIKVA
Sequence
>complement(24059..24673)
HungateiclostridiumthermocellumMCKTKGDLYTMTFEEVKKYMDENKTSDEVKAYLQGLMSVEGVQKFLSENEEGRRWFDSEKDKHLEKGLKTWKDNNLQREIDKKIKELYPEESEEKKQLRELTAKIERMELEKQREILKNKALTIASEKKLPINKIADLFIAEDEEATVANISRFEEIFNSSVQSAVEERLKSIGYNPPQNNSPRDNQPKSLNEALKQYYSSQNK
Sequence
>complement(25097..26398)
HungateiclostridiumthermocellumMIINENLILECLNELNKNAKDKQRYKDYYEGNHSILKNYQMQDSRSNMKLVFNFPRKFVDNETGYLLGKPVNYVSKSDDNEIIDAIDRNTSHWDKEHNINLRKQSEIYGEAYELNYINTDGEFCATILTPIEAYVLEDGTAERNVVLALHTFTKKFDDKKYLDVYTDSEIRHYELGSSGTRPELKYIGSHEHIFGRVPVIVCPANNERKSGFQDVVSLFDAYNAINSDLVNEIADHRNAYLVIENAKIEEEDLLKMKSMGIIQVPNQAKVYWLIKDINDSFVKNELDNIERKIFDLMDEVNFNENWAANTSSLALRNKLLNLENRVAMREAIMEKVIKQRLKNLFVYLKKKEGKSYDYRDVAVKFTRNLPTDLAGLADVITKLKDVCSQETLLTLLPFVENPKVELEKYYFEKRRSGTIPEGNISSVQNQVIV
Sequence
>complement(26439..27200)
HungateiclostridiumthermocellumMYNYYEITNEDRGKRYFFSIKEAVALDEYMKAEYKCQIEIYGRAWRICYDDYEDECIFYNTKPEIILLSKKDGKCIVDIGLATGSLGNEYTLKFSIAEQDYFRMIEYVNFVEDNLAYFKHLDDVDVSYHDKEIATLSGEEFETLIKKLLENMGFDVSITKVSGDGGIDLIAYNPQPIFGGKIVVQCKRWSGPVGEPVIRDLYGVVMSENANKGILITNSYFTSSAINFSKGKQLELIDGIALDKLLEKYMPSH
Sequence
>complement(27272..28822)
HungateiclostridiumthermocellumMNKYFSPNKIEELVGEFSFSELRKLLGEMDIEFFALCYFPKYFDRRFGQFHKELFDELKYMLDNKGLIEAFGLPREHGKSTINSFLFPLYSTLYNKSQFTLIISATEQVALPFLDMIKDELENNQLLIEDFGIYKGNRWNNNEIWIRGRGGVDACIMIRGIDGSLRGIHFKQHRPQLVLLDDLLKDDTAKSEAKREQVKSTFTDVVIPIGTKDTNILVVGTILHEEDLMAELLKGKIPGVRSIKKSAVISFAERDDLWSEWESIYNNLQDLDRIETAKSFFYDHQEEMLQGTEILWPEYLDYYYLMCKKQAMGDKSFYKEMQNDPRSTDDYIFQDIQYWDRLPDFEEMELVMYVDPAIKAGKRNDYSAITVLGKHIKTKQKYVVDGCIYRMLPDDLFQIAIEKLKQYPIEKIGFETTQAQSYMKQKFEEELWKNKIYTPVDEMISRGQKHERIISLEPEVKKGHILFNPANIRYNNQVKDYNKSAKYDDAPDSLYGAVQLIEGVKSIRFYDRSLLF
Sequence
>28953..29561
HungateiclostridiumthermocellumMESLWNSLLCFINSNSALWSFLVTIATIVYVILTYRLLRETAKARKLQSQPYIIADLVLKGISLKMIVKNIGNNCALNVKVEVEPAINNPFSKIDFLAPEREISNVIKYITHGEAFNLENSKYKFKIFYEDPYKEKYNHEYSIDISPLLNATNYNESENKEIVDKLNKILPKFDSLKDELHSIADSSKKIADYLKDIKSKFK
Sequence
>complement(29859..30707)
HungateiclostridiumthermocellumMLDLSGFEAYLRSKERSRNTISCYIRDSKAFIDWYSSRTDCGFDKLIELDAIEYKKHLLNTSESVVTVNRKISSINIFFKWLYESRITPDEIKIKPVKNRDARQYKGLEERELRKLRAEIHRNRNKMHICIIEILLGTGLRVSELCNIRLRDIEISERKGSLRVIGKGNVNRTIPLNKDVRKAIKDYLAVRPKDDSDFLLIGQRGALKRNAINLILEKYGKRVDVEVTPHQLRHTLGYKLVKEGTAITTIQQILGHENIMTTNLYTVTTEQDKADALEALEW
Sequence
>complement(30869..31570)
HungateiclostridiumthermocellumMANSVLTKYYTHVEPRLDEIEKWVDEGCTKAEIARLLDISLWALDDYTKKHPQLAKILKKDDKWNTVILPKLSDIKDWLVNGATVREVCSKLAISPDTWYRYCREHEILMELVNMGRSVLCNQVEKSLLKLCTGYDYEELKTIVEEDKNGKKRTKIEKIKRHQPPSAQAIAFFLRNRMPEEWSDKKELILDTSQNEEARKKLFLQMINGELETEDDIIDSEDEQPRTDDEYIQ
Sequence
>complement(31627..31905)
HungateiclostridiumthermocellumMSGIIKYFREFIEERSEEMCVALGKNNKEYKELCIKSSDLQRKIIDALGDERSSMFFEYEDAVNAQAGIIKEELYKAGFIDGIKVAKLIDKI
Sequence
>complement(32037..32237)
HungateiclostridiumthermocellumMRTENLIRETLKGLLATANEKICVLGLVDAQEDLRQIRDMYVELVRFWALDEHLIEEFDEQIGLLK
Sequence
>complement(32441..33205)
HungateiclostridiumthermocellumMERKEIVKALGEHFGVEPKYMGAPSFAYQIETAEETYTIDRAGKITTSEGKEVELESILNEEIEKKSSEPAATETGTFEVAVPMEGHTGISLKNLVNMIYSKQGLIKKSLGLTANIIEDDFCIGINEAKTETLEDLKTAIEGIGEKRCPGIAFDFNNNTITFKFLEGEANPEKVKAYTQLVALLNQNAKTLKHVSAKAKDTDNDKFTFRVFLIRLGMVGDEYKDTRKILLENLEGNSAFRSGKKPDKKVDIATK
Sequence
>33371..33382
TTCCAAGGCTTT
Sequence
>complement(33406..33849)
HungateiclostridiumthermocellumMAKLYIAYGSNMNLEQMAYRCPTARVKGVGKIAGWKLTFRGADGSAVATIEPCKKGEVPVLLWEIEPSDEVALDRYEGYPWLYRKEIIPVIFESEAIEAMAYIMNEGRPIGTPSRRYYETIRQGYESAGLDEEYLKKACIKAKRKSR
Sequence
>complement(33917..34810)
HungateiclostridiumthermocellumMKNQAFGIEIELTGITREQAAKEIAGYFGTTAFFEGGAYYTYRVKDAQGRDWKVMRDSSISPERKVTGRTVTADDNYKVEVVSPKCGYADIETIQELVRRLRKAGAIANSSCGIHIHIDASNHNAKTLRNLVNIMASKQDLIYKALRVDYARESRYCKKVKDALIEKLNKAKPTTIEKVADIWYEGYYGSRNVHYHDSRYHGLNLHSTFSKGTVEFRFFNSTTHAGKIKAYIQFCLAINHQAIIQKSASAKKTETDNPKYTFRTWLLRLGLIGNEFSTARKHLLANLEGDIAWRHAA
Sequence
>complement(34992..36257)
HungateiclostridiumthermocellumMEFRKINIDRLKHAEYNPRKDLKPGDAEFEKIKNSITEFGYCEPIIVNSDMTIIGGHQRAKVLKELGYTEIDCVVINIDKTKEKALNIALNKVTGEWDFESLAKLLDELKEEDYNIELTGFDFSEAEKLWDEYISENKRDYYKDDDFDIELPEEPVTKRGDIWLLGKHRLMCGDACSESDVAALMREDFADMVFTDPPWNVNYGATEHPSWKQRTILNDSMTTEEFKKFLDSAFKVMNKFSKPGCMTYVVMSAQEWGNLMLSLKENGYHWSSTIIWNKDRLVLSRKDYHTKYEPIWYGWSDGSARLHPLTDRQQCDVWDIPRPSVSELHPTTKPVELVVRAIKNSSNMKDIVLDLFGGSGTTLIACEETDRRCRMMELDEKYADVIVKRYIDKVGSDADVFVLRDGEKIRYVDIKREQVAV
Sequence
>complement(36520..39225)
HungateiclostridiumthermocellumMTVANAIAYEDFDDTLKINVSVDEKRFTKKPDKPTMIKISNRIASYPRYAELERLPEIIGERGFSWCPATFTDGKRKISNFKSQQLFALDFDKGITWEEVQERASKYRLPISFAYETLSSMNKSKFRVALCCDVEITSDRAARVIQIALMEIFPECDPNCKDCSRLFLGGKGLIYVNENINTALFNISDLMLALVEYYRDIDNGNNNVSRKIKKYAENVGIELKNSLPRVEILEEEDISEIKTDVLGASPIIYNNKGNAPETSKTYYAIYLTNKIKKTKVVKTGEGQEEVVIYETVNTKTGKRDLIRNFNFDRLKEACRLFSEFAEGKRWCYHPELWGMATNLCQIKGGGDKFIQILTDKVNEQYESYMEKDWEYYINYIQKQDYLPQRCVNFCPYAEECNHAKNMIMTAKTRRNTIVKLSNNYEYATLSEAEKDLHDTFVKLQAVKDDKIHVIKAQTGIGKSRTYIGCLDKADRPYIIAVPTNKLKEEIYKKCTDAGYHVVMTPTLPSDIPEYIKNEIERLYSIGATYTAGKYIRKAAKEKGLPQLLEYIEQMETVKSFQGHIITTHSRLLYFKSKQFQTHNILIDEDIIKTLLQVNKVSIKDLLKIQQVKYISNMDRLGIDQKFKYIFQDNDYQTFIKTNPISVNNMLNFEKQIADYESEINSNVIGFLNCCVAYRYNTDKKKMAVKGYYSDGDMIQYLVKRELPKQKIIIMSATADEQIYKRMFGERVEFHYCKKAKYKGKLIQYPARSYSRQCIENDSELMDIAKSIVGDIPIITFKAKKENEEDLNFGSTEGHNCFEGQDIAVVGTPHLHEIVYKMYAVALDIDMSDTEMKYQEIERNGYKFWFMTYKNEDLRNLQMWLIESELEQAVGRARLLRNNCSVFLFSNYPLEQAEFRYL
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 44176 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: EPD62_10400 (Region 1)
Locus: EPD62_10400ORF Start: 19111
ORF Stop: 20730
Strand: Backward
Protein Sequence: MAANTAVKKIRKIEAKPVQVIKGLPENAKTRVCAYCRVSTDNKEQESSYESQVFYYTNYINSRSDWTLVDIYADDGISGTSTAKREDFKRMIQDCMDGKIDMIITKSISRFARNTLDCLDYVRRLKEKGIAVFFEKENINTLDSKGEVLLSILSSLAQDESRNISENTRWGIVRQFEKGRVLVNTTRFLGYDKNEAGELIINEEEAKIVRRIFREYLEGKSYNAIAKGLMKDGIKTVTGNTKWWDSTISGILENEKYYGDALLQKTITVDFLRHKRVDNKGQAEQYIIEGNHPPIISKEIFDRVQAEKARRAAKYNNVEGDRQKYSNKYPFSGKVFCGNCGNIYRRRQWNSNNPSRKFVWQCKTYIMNGKKACAAKAVDESVLKDAFVRVFNQLYENREGFIKTLIENIEKVFLHKPSDREIEALENKIEELKTELKRLIRFQTNNGMDDEVYREEYKRISDELEELREKRAEVDKDSILKDSLKGRVDEIIEVIKGRQEALEEFDEGIFNALVEKIEVVSPTHFVFELKSGARVEERI
Homolog/Ortholog Species: Lysis protein
Homolog/Ortholog Protein: EPD62_10400, protector from prophage-induced early lysis, phage(gi100001), PHAGE_Lactoc_28201_NC_031013
Homolog/Ortholog E-Value: 3.24e-31
Locus 2: attL (Region 1)
Locus: attLORF Start: 20812
ORF Stop: 20823
Strand: Forward
Protein Sequence: TTCCAAGGCTTT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 3: EPD62_10405 (Region 1)
Locus: EPD62_10405ORF Start: 21012
ORF Stop: 22160
Strand: Backward
Protein Sequence: MNKIDDMIDFFLYEKGESIKINGTGEAALIMDAADKLTYYDDKIIRCKCQIRTGDIVEYNNLKYMIISQIDREENTFRARMRKCSCRIAFNWSGNIKWFDCIEESKVFDITSGNYISVASGNIYVTVQYNPDTRNIALNERFYITNQPFKVTGIDKSQEGLIKLNCTLDAISTTYDDVENNIADRWKYETLHTYTLAINNGDAANVLINDTIQLNVTVTDNGTALTNPAITFISSDPNCVSVDNTGKVMGIALGQAVITAKLTYHDTVADSITITTVETLAHNYSITITGSSTVKLGQSQSYVAHIYDNGNEVFDKSVAWSIRNQDGTSTPYASITASIGNSATVKAASSSAYLNKYVVLTATLSDDSTVFKEFNIQIKSLF
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EPD62_10405, hypothetical protein, phage(gi80159847), PHAGE_Clostr_c_st_NC_007581
Homolog/Ortholog E-Value: 2.26e-17
Locus 4: EPD62_10410 (Region 1)
Locus: EPD62_10410ORF Start: 22165
ORF Stop: 22440
Strand: Backward
Protein Sequence: MFYNTLIKIYSKSDPNSYIKSIYADVQPYLKSIMFEDGFEINITKRVFCDIENSISIHSYMEIENEKYKVMDIKKWDSYMEVYLYKLKRQV
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EPD62_10410, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: EPD62_10415 (Region 1)
Locus: EPD62_10415ORF Start: 22442
ORF Stop: 22741
Strand: Backward
Protein Sequence: MLEIVKMLLDMDVSDTSKDNLLNHFIKKATDIILGYCNIDALPEQYHDVAADLAVFLYNNRDLEGITKKTEGEKSLTIINAIPESIRLALPPPRIRVVG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EPD62_10415, RecA-like recombination protein, phage(gi100035), PHAGE_Clostr_phiCT453A_NC_028991
Homolog/Ortholog E-Value: 4.34e-07
Locus 6: EPD62_10420 (Region 1)
Locus: EPD62_10420ORF Start: 22745
ORF Stop: 23041
Strand: Backward
Protein Sequence: MARIYSKNKQYNGISAGVNFVNGVGVTDDPYLVSWFMENGYTVEEKKEIKNYEDMTYKELTDYAKERGFNGIGYKKEQLIQALYDLDKKEDKIRETEG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EPD62_10420, hypothetical protein, phage(gi372450011), PHAGE_Rhodoc_REQ3_NC_016654
Homolog/Ortholog E-Value: 3.45e-08
Locus 7: EPD62_10425 (Region 1)
Locus: EPD62_10425ORF Start: 23056
ORF Stop: 24036
Strand: Backward
Protein Sequence: MITLAQAKLNTQDDIQAGVIDEFRKSSFILDNMPFDDAVTPGTNGATLTYGYTRLITQPTAAFRAINSEYTPQEVEKQRYTVELKPFGGSFQIDRVIASTGGLVDEVNLQVQQKVKAARALFHDTIINGDSAVDANSFDGLNKAITGSSTEFNTGAYIDLSTSSAVDANYKQFLDLLDEFLSNLDGKPTFLGGNSKLITKIKAVARRAGYLTQSEDAFGRKVDAYDGIVLVDFGAKAGSNDPVVSIVNTRKPNGTDVVTGLTDLYAARLALDGFHAVSLANQDLVKIWLPDFSTAGAVKNGEVEMVAAVALKATKAAGVFRNIKVA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EPD62_10425, hypothetical protein, phage(gi100006), PHAGE_Gordon_GMA1_NC_030902
Homolog/Ortholog E-Value: 9.12e-91
Locus 8: EPD62_10430 (Region 1)
Locus: EPD62_10430ORF Start: 24059
ORF Stop: 24673
Strand: Backward
Protein Sequence: MCKTKGDLYTMTFEEVKKYMDENKTSDEVKAYLQGLMSVEGVQKFLSENEEGRRWFDSEKDKHLEKGLKTWKDNNLQREIDKKIKELYPEESEEKKQLRELTAKIERMELEKQREILKNKALTIASEKKLPINKIADLFIAEDEEATVANISRFEEIFNSSVQSAVEERLKSIGYNPPQNNSPRDNQPKSLNEALKQYYSSQNK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EPD62_10430, scaffold protein, phage(gi423262331), PHAGE_Deep_s_D6E_NC_019544
Homolog/Ortholog E-Value: 5.72e-38
Locus 9: EPD62_10435 (Region 1)
Locus: EPD62_10435ORF Start: 25097
ORF Stop: 26398
Strand: Backward
Protein Sequence: MIINENLILECLNELNKNAKDKQRYKDYYEGNHSILKNYQMQDSRSNMKLVFNFPRKFVDNETGYLLGKPVNYVSKSDDNEIIDAIDRNTSHWDKEHNINLRKQSEIYGEAYELNYINTDGEFCATILTPIEAYVLEDGTAERNVVLALHTFTKKFDDKKYLDVYTDSEIRHYELGSSGTRPELKYIGSHEHIFGRVPVIVCPANNERKSGFQDVVSLFDAYNAINSDLVNEIADHRNAYLVIENAKIEEEDLLKMKSMGIIQVPNQAKVYWLIKDINDSFVKNELDNIERKIFDLMDEVNFNENWAANTSSLALRNKLLNLENRVAMREAIMEKVIKQRLKNLFVYLKKKEGKSYDYRDVAVKFTRNLPTDLAGLADVITKLKDVCSQETLLTLLPFVENPKVELEKYYFEKRRSGTIPEGNISSVQNQVIV
Homolog/Ortholog Species: Portal protein
Homolog/Ortholog Protein: EPD62_10435, putative phage portal protein, phage(gi431810361), PHAGE_Clostr_phi8074_B1_NC_019924
Homolog/Ortholog E-Value: 2.05e-54
Locus 10: EPD62_10440 (Region 1)
Locus: EPD62_10440ORF Start: 26439
ORF Stop: 27200
Strand: Backward
Protein Sequence: MYNYYEITNEDRGKRYFFSIKEAVALDEYMKAEYKCQIEIYGRAWRICYDDYEDECIFYNTKPEIILLSKKDGKCIVDIGLATGSLGNEYTLKFSIAEQDYFRMIEYVNFVEDNLAYFKHLDDVDVSYHDKEIATLSGEEFETLIKKLLENMGFDVSITKVSGDGGIDLIAYNPQPIFGGKIVVQCKRWSGPVGEPVIRDLYGVVMSENANKGILITNSYFTSSAINFSKGKQLELIDGIALDKLLEKYMPSH
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EPD62_10440, putative restriction endonuclase, phage(gi80159877), PHAGE_Clostr_c_st_NC_007581
Homolog/Ortholog E-Value: 4.69e-10
Locus 11: EPD62_10445 (Region 1)
Locus: EPD62_10445ORF Start: 27272
ORF Stop: 28822
Strand: Backward
Protein Sequence: MNKYFSPNKIEELVGEFSFSELRKLLGEMDIEFFALCYFPKYFDRRFGQFHKELFDELKYMLDNKGLIEAFGLPREHGKSTINSFLFPLYSTLYNKSQFTLIISATEQVALPFLDMIKDELENNQLLIEDFGIYKGNRWNNNEIWIRGRGGVDACIMIRGIDGSLRGIHFKQHRPQLVLLDDLLKDDTAKSEAKREQVKSTFTDVVIPIGTKDTNILVVGTILHEEDLMAELLKGKIPGVRSIKKSAVISFAERDDLWSEWESIYNNLQDLDRIETAKSFFYDHQEEMLQGTEILWPEYLDYYYLMCKKQAMGDKSFYKEMQNDPRSTDDYIFQDIQYWDRLPDFEEMELVMYVDPAIKAGKRNDYSAITVLGKHIKTKQKYVVDGCIYRMLPDDLFQIAIEKLKQYPIEKIGFETTQAQSYMKQKFEEELWKNKIYTPVDEMISRGQKHERIISLEPEVKKGHILFNPANIRYNNQVKDYNKSAKYDDAPDSLYGAVQLIEGVKSIRFYDRSLLF
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EPD62_10445, DNA primase subunit, phage(gi100025), PHAGE_Bacill_BalMu_1_NC_030945
Homolog/Ortholog E-Value: 9.71e-95
Locus 12: EPD62_10450 (Region 1)
Locus: EPD62_10450ORF Start: 28953
ORF Stop: 29561
Strand: Forward
Protein Sequence: MESLWNSLLCFINSNSALWSFLVTIATIVYVILTYRLLRETAKARKLQSQPYIIADLVLKGISLKMIVKNIGNNCALNVKVEVEPAINNPFSKIDFLAPEREISNVIKYITHGEAFNLENSKYKFKIFYEDPYKEKYNHEYSIDISPLLNATNYNESENKEIVDKLNKILPKFDSLKDELHSIADSSKKIADYLKDIKSKFK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EPD62_10450, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 13: EPD62_10455 (Region 1)
Locus: EPD62_10455ORF Start: 29859
ORF Stop: 30707
Strand: Backward
Protein Sequence: MLDLSGFEAYLRSKERSRNTISCYIRDSKAFIDWYSSRTDCGFDKLIELDAIEYKKHLLNTSESVVTVNRKISSINIFFKWLYESRITPDEIKIKPVKNRDARQYKGLEERELRKLRAEIHRNRNKMHICIIEILLGTGLRVSELCNIRLRDIEISERKGSLRVIGKGNVNRTIPLNKDVRKAIKDYLAVRPKDDSDFLLIGQRGALKRNAINLILEKYGKRVDVEVTPHQLRHTLGYKLVKEGTAITTIQQILGHENIMTTNLYTVTTEQDKADALEALEW
Homolog/Ortholog Species: Integrase
Homolog/Ortholog Protein: EPD62_10455, integrase, phage(gi589893371), PHAGE_Mycoba_32HC_NC_023602
Homolog/Ortholog E-Value: 1.08e-14
Locus 14: EPD62_10460 (Region 1)
Locus: EPD62_10460ORF Start: 30869
ORF Stop: 31570
Strand: Backward
Protein Sequence: MANSVLTKYYTHVEPRLDEIEKWVDEGCTKAEIARLLDISLWALDDYTKKHPQLAKILKKDDKWNTVILPKLSDIKDWLVNGATVREVCSKLAISPDTWYRYCREHEILMELVNMGRSVLCNQVEKSLLKLCTGYDYEELKTIVEEDKNGKKRTKIEKIKRHQPPSAQAIAFFLRNRMPEEWSDKKELILDTSQNEEARKKLFLQMINGELETEDDIIDSEDEQPRTDDEYIQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EPD62_10460, DCTP pyrophosphatase, phage(gi100024), PHAGE_Clostr_phiCT453A_NC_028991
Homolog/Ortholog E-Value: 6.88e-14
Locus 15: EPD62_10465 (Region 1)
Locus: EPD62_10465ORF Start: 31627
ORF Stop: 31905
Strand: Backward
Protein Sequence: MSGIIKYFREFIEERSEEMCVALGKNNKEYKELCIKSSDLQRKIIDALGDERSSMFFEYEDAVNAQAGIIKEELYKAGFIDGIKVAKLIDKI
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EPD62_10465, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 16: EPD62_10470 (Region 1)
Locus: EPD62_10470ORF Start: 32037
ORF Stop: 32237
Strand: Backward
Protein Sequence: MRTENLIRETLKGLLATANEKICVLGLVDAQEDLRQIRDMYVELVRFWALDEHLIEEFDEQIGLLK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EPD62_10470, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 17: EPD62_10475 (Region 1)
Locus: EPD62_10475ORF Start: 32441
ORF Stop: 33205
Strand: Backward
Protein Sequence: MERKEIVKALGEHFGVEPKYMGAPSFAYQIETAEETYTIDRAGKITTSEGKEVELESILNEEIEKKSSEPAATETGTFEVAVPMEGHTGISLKNLVNMIYSKQGLIKKSLGLTANIIEDDFCIGINEAKTETLEDLKTAIEGIGEKRCPGIAFDFNNNTITFKFLEGEANPEKVKAYTQLVALLNQNAKTLKHVSAKAKDTDNDKFTFRVFLIRLGMVGDEYKDTRKILLENLEGNSAFRSGKKPDKKVDIATK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: EPD62_10475, virulence-related protein
Homolog/Ortholog E-Value: N/A
Locus 18: attR (Region 1)
Locus: attRORF Start: 33371
ORF Stop: 33382
Strand: Forward
Protein Sequence: TTCCAAGGCTTT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Locus 19: EPD62_10480 (Region 1)
Locus: EPD62_10480ORF Start: 33406
ORF Stop: 33849
Strand: Backward
Protein Sequence: MAKLYIAYGSNMNLEQMAYRCPTARVKGVGKIAGWKLTFRGADGSAVATIEPCKKGEVPVLLWEIEPSDEVALDRYEGYPWLYRKEIIPVIFESEAIEAMAYIMNEGRPIGTPSRRYYETIRQGYESAGLDEEYLKKACIKAKRKSR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EPD62_10480, gp514, phage(gi593777969), PHAGE_Bacill_G_NC_023719
Homolog/Ortholog E-Value: 1.00e-17
Locus 20: EPD62_10485 (Region 1)
Locus: EPD62_10485ORF Start: 33917
ORF Stop: 34810
Strand: Backward
Protein Sequence: MKNQAFGIEIELTGITREQAAKEIAGYFGTTAFFEGGAYYTYRVKDAQGRDWKVMRDSSISPERKVTGRTVTADDNYKVEVVSPKCGYADIETIQELVRRLRKAGAIANSSCGIHIHIDASNHNAKTLRNLVNIMASKQDLIYKALRVDYARESRYCKKVKDALIEKLNKAKPTTIEKVADIWYEGYYGSRNVHYHDSRYHGLNLHSTFSKGTVEFRFFNSTTHAGKIKAYIQFCLAINHQAIIQKSASAKKTETDNPKYTFRTWLLRLGLIGNEFSTARKHLLANLEGDIAWRHAA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EPD62_10485, hypothetical protein, phage(gi100098), PHAGE_Arthro_Laroye_NC_041947
Homolog/Ortholog E-Value: 1.60e-14
Locus 21: EPD62_10490 (Region 1)
Locus: EPD62_10490ORF Start: 34992
ORF Stop: 36257
Strand: Backward
Protein Sequence: MEFRKINIDRLKHAEYNPRKDLKPGDAEFEKIKNSITEFGYCEPIIVNSDMTIIGGHQRAKVLKELGYTEIDCVVINIDKTKEKALNIALNKVTGEWDFESLAKLLDELKEEDYNIELTGFDFSEAEKLWDEYISENKRDYYKDDDFDIELPEEPVTKRGDIWLLGKHRLMCGDACSESDVAALMREDFADMVFTDPPWNVNYGATEHPSWKQRTILNDSMTTEEFKKFLDSAFKVMNKFSKPGCMTYVVMSAQEWGNLMLSLKENGYHWSSTIIWNKDRLVLSRKDYHTKYEPIWYGWSDGSARLHPLTDRQQCDVWDIPRPSVSELHPTTKPVELVVRAIKNSSNMKDIVLDLFGGSGTTLIACEETDRRCRMMELDEKYADVIVKRYIDKVGSDADVFVLRDGEKIRYVDIKREQVAV
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EPD62_10490, transferase, phage(gi39653711), PHAGE_Strept_EJ_1_NC_005294
Homolog/Ortholog E-Value: 5.34e-67
Locus 22: EPD62_10495 (Region 1)
Locus: EPD62_10495ORF Start: 36520
ORF Stop: 39225
Strand: Backward
Protein Sequence: MTVANAIAYEDFDDTLKINVSVDEKRFTKKPDKPTMIKISNRIASYPRYAELERLPEIIGERGFSWCPATFTDGKRKISNFKSQQLFALDFDKGITWEEVQERASKYRLPISFAYETLSSMNKSKFRVALCCDVEITSDRAARVIQIALMEIFPECDPNCKDCSRLFLGGKGLIYVNENINTALFNISDLMLALVEYYRDIDNGNNNVSRKIKKYAENVGIELKNSLPRVEILEEEDISEIKTDVLGASPIIYNNKGNAPETSKTYYAIYLTNKIKKTKVVKTGEGQEEVVIYETVNTKTGKRDLIRNFNFDRLKEACRLFSEFAEGKRWCYHPELWGMATNLCQIKGGGDKFIQILTDKVNEQYESYMEKDWEYYINYIQKQDYLPQRCVNFCPYAEECNHAKNMIMTAKTRRNTIVKLSNNYEYATLSEAEKDLHDTFVKLQAVKDDKIHVIKAQTGIGKSRTYIGCLDKADRPYIIAVPTNKLKEEIYKKCTDAGYHVVMTPTLPSDIPEYIKNEIERLYSIGATYTAGKYIRKAAKEKGLPQLLEYIEQMETVKSFQGHIITTHSRLLYFKSKQFQTHNILIDEDIIKTLLQVNKVSIKDLLKIQQVKYISNMDRLGIDQKFKYIFQDNDYQTFIKTNPISVNNMLNFEKQIADYESEINSNVIGFLNCCVAYRYNTDKKKMAVKGYYSDGDMIQYLVKRELPKQKIIIMSATADEQIYKRMFGERVEFHYCKKAKYKGKLIQYPARSYSRQCIENDSELMDIAKSIVGDIPIITFKAKKENEEDLNFGSTEGHNCFEGQDIAVVGTPHLHEIVYKMYAVALDIDMSDTEMKYQEIERNGYKFWFMTYKNEDLRNLQMWLIESELEQAVGRARLLRNNCSVFLFSNYPLEQAEFRYL
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EPD62_10495, hypothetical protein, phage(gi422936297), PHAGE_Cyanop_S_TIM5_NC_019516
Homolog/Ortholog E-Value: 2.02e-08
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download