Submission Results
Sequence Name: Not Available
GenBank Accession Number: SIKU01000001.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: SIKU01000001.1.PHASTER.zip
gi|00000000|ref|SIKU01000001.1| Rhizobium leguminosarum strain SM39 chrom_SM39, whole genome 4919599, gc%: 61.13%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 19.1Kb | incomplete | 30 | 8 | 2773128-2792252 info_outline | PHAGE_Sinorh_phiLM21_NC_029046(2) | 57.98% | Show info_outline |
Region DNA
>1 2773128-2792252 AGCCCGTCGCATTGCGGATCGACTTGATGAGGTCGTAGAGGACGATCTCGCCGGAAAAAT CGACCCCCTGCACCGGCTCGTCGAGGACCAGCAGATCGGGCTTGCGGGCAATGGCGCGCG CCATCAGCGCCCGCTGGAATTCGCCGCCGGAGAGGTGCTGGACCTCGGCATCGAGCATAT GGGCAATGCCGGCGGATTCGAGCGCCGAGAGCATATCGCGCTCCGGCAGCGGTCCTGTCA GCGTCATCAGCCGGCGCACCGAAAGCGGCAGCGTCCAGTCGATCGACAGCTTCTGCGGGA CATAGCCGACCTTGAGGCCGGCCTTGCGCTCCACCCTGCCCTCATCAGGCTTCAACACAC CGATCGCTGCCTTGGCGCTGGTCGATTTGCCCGAGCCGTTCGGCCCGATCAGCGTGACGA TCTCGCCGCGCGAGACCGAAAAATCAACGCCGCGCACCAGCCAGCGGCCATTGCGCAGAA CGCCGACATTTTCAAGCGAAACCAGCGGTTCGGCCCTGATACCAGCGGGGGTCTTTGCGG GAGAGAGCATCAAATTTTCCGAAAGTGCTGTTGCGTCCTGCTATTGCACACGTTATAGCA TAACGCAATTGATGTAATAACATAACAATTGCAATTCAAGGGAAGCATACTGATGAAACG CGCCTTGGGGCCTGCCCTTAAAATCTTGGCCCTCCGAATGCCGGCCTTCACAATCCCGGC CCTGGCGATCCCCGCCCTACTCTTTGCCGGCACCATGCGGGCAGCCGATGCACCCGTCGT CGTCACCTCGATCAAGCCGATCCATTCGCTGGTTTCGGCGATCATGCAGGGTGTCGGCGA ACCCGAATTGATCGTCGATGGCGCAGCCTCCCCGCATACCTACAATCTGAAGCCATCGAA TGCCCGCGCCATGCAGGACGCCAAGGTGATCTTCTGGGTCGGCCCGGGCCTCGAGGCTTT CCTCGAAAAGCCGCTGCAGGCGTTGGGCCGGAATGCCAGCATCGCGGCCCTCGACGACGC GCCCGGTCTCGTCAAGCTGCCTTTCCGTGAAGGCGGCGCCTTCGAGCCGCATGATGACGC CCCGGAGCACGAAAGTGCTTCCGGTCAGCATGATGAGGCTGACGCCGCACATGATGCTGA TCCCGGGCACGCCAGTGACCATGACCATGACCACGACCACGATACATTCGACACCCATCT CTGGCTCGACCCGATGAACGCCAAGGCCATGGCGGCCATGATCACCACGACGTTGGTCGC CGCCGATCCCGCCAATGCTCTGACCTATCAGGGCAACGCCAAGGCGCTGGACGACAAGCT GGATGCGCTCGATACCGAGATCAAGGACATGGTCGCTCCCGTCAAGGACAAGCCCTTCAT CGTCTTCCACGACGCCTACCAGTATTTCGAGCACCGCTACGGTATCCGCGTCACCGGCTC GATCACCGTCAGCCCGGAAACCATTCCCGGCGCCGAGCGTGTTTCGGAAATCCACCGCAA GGTCGGCGAACTCGGCGCCACCTGCGTCTTTGCCGAACCGCAGTTCGAGCCGCGCCTCGT CAATGTTGTCATCGAAGGCACGCGCGCCAAGTCAGGCGTGCTCGATCCCGAAGCGGCAAC ACTGAAGGCCGGTCCCGATCTCTACTTCAACCTCATGCGCGGCATCGCCAACAGCATGAA GGACTGCCTCTCCAGCGCATGACTCTCATGCGCCGCTCCGCGCGTCCTGCCGGACACGCG ACGCTCCAGGGAGAGCTGAGGCGGAAAAAGGCGAACAACCCCGTTCCGCCTTTTTTTGGA CCATCAAATGTAATGATATAACATAAATAAGACTCTGATGAGGTTCCCATGGACAACAGA CTTCCCGTCACGGTGCTTTCAGGCTTCCTCGGCGCCGGCAAGACGACGCTGCTCAACCAC GTACTGACCAATCGCGAAGGTTTACGCGTCGCGGTTATCGTCAACGACATGAGCGAGGTG AATATCGATGCCGCCCTGGTGCGCGATGGCGGCGCCAATCTCTCCCGCACCGAGGAACAG CTCGTCGAGATGACCAATGGCTGCATCTGCTGCACGCTGCGCGACGATCTGCTGAAGGAG GTGCGCCAGCTCGCCGATCAGGGCCGCTTCGATTACCTCTTGATCGAATCGACCGGCATC GCCGAGCCCCTGCCCGTCGCCACCACCTTCGAATTTCGCGACGAGAATGGCCAAAGCCTT TCCGACGTCGCAAGGCTCGACACCATGGTGACCGTCGTCGACGCCGCCAATCTGCTTGCC GATTATGCCTCGGCCGATTTCCTCGCCGACCGCGGAGAAACGGCCGGCGACGGCGACAAC AGAACCATCGTCGACCTGCTGGTCGAGCAGATCGAATTCGCCGACGTCGTGGTGCTGAAC AAGATCGGCACGGCAACCAAGGAAGAGCGCGACGCCGCGCGCAAGATCATCACCGGCCTC AACCCGGATGCGAAGCTGATCGAGGCGGATTTCGGCAAGATCGCCCTGAAAGACGTGCTC GGCACCGGCCGCTTCGATATCGACAAGGCCGAGACCCATCCGCTCTGGTACAAGGAACTG CACGGTTTCCGCGATCACGTGCCGGAGACCGAGGAATATGGCATCCGCTCCTTCGTCTAT CGCGAGAAGCGGCCCTTCCATCCGGCAAAGCTGCAGGCCTTCCTCGATCGGACATGGCCA GGCGTGGTGCGCGCCAAGGGCTTCTTCTGGCTGGCGACGCGCCCGCACCATGTCGGCGAG GTCAGCCAGGCGGGCGCGATCGTGCGCACCGGCAAGATGGGTCTCTGGTGGGCGGCCGTA CCCCGCGAACAATGGCCTAAGGAACCGGCCTTCATGCGCGCCATCGGCCCCTATCTCGAC CCCGTCTGGGGCGACCGGCGCCAGGAAATCGTCTTCATCGGCGCCGATCCGATGGACGAA GCCTGGATCAGGAAGGAACTCGACGCCTGTCTGCTCGACACCACGGTATTTGCGCCGGAA CGCTGGCGCAACCTGCCCGACCCTTTCGCCAGCTGGAACAGGCAGGCGGCATGAAGGCGA AGGCGATCAAACGCACTCTCTGCGTCTGTACCGAATGCGAACCGCTGCCGCCAATCGAAG GGCTTCATCCGCTTACGCACGAGGAGGATACCGACGCTGAAGTCGGAAGACCAAGAGGTT TTCTCGGCATCATTGCTGATCGGGTCATGCCGTCGCGCAGGCAATTCTGAAGCGGGTCAC AACCGCCGCCAGCTGAAGAAGCGAAGGAAGGGCGCGAAACGGCTACACGCCCTCCCCAGA ATCAAAAAGGCGGCCGAAGCCGCCCTTTCCTGATCTAACGACCGATCAGCGACCGGCAAT AATGCTGGAGATGATCCCGCTGGTAACGCCGATCAGCAGGTAATCGTTATCGGCCCGCAC CCAGCGATAACCGCGGGGCGGAGGCGCCAGCCGGTAGCGGCGGTAGTCGTTGACATCGGA GAACCGGCGACGCTCGCTGGCATTGACGCGGTATCCCCTCTTCCAATGCGACCGGACGAC CACCTTCTTATGCACGACCACCTTCTTATGCACGACGACCGGGGGACGGCGATGATCGTC GGCGCTGGCCTGGGAAACAACCATCGGGGAAAGAAGGAAGGAGGCGGAAAGAAGAGCTGC AAAAATCTTTTTCATGCGGAGTTCCTCGTGTTGAGTACGAGACCAAACTAGGGCCGAAAA GATGAACTGAAACTGAAATAAAAATTAAACTTTTGTAATGGAATCCGATGGCTACGGGTC GAAGTTTATATTTTAGATTAAGCTTATACACGGTGATCGAAGTTTTGGCTTCCTGCTGCT GGCGGCAGGCGGCATGCTCTCGATTCGATCTAGTTTCGCCTAAGGGTGCTCAGCGATTTG GCCTAACGAAATACATAAAAAAACTTGAAACGGGCGCATAATCGAGTTTCAAGGCGAGAC ATCCTAGGAATAGGAGAATTCTGCAACCCGCGAGGGGACGATCAGATCAAGACAACGAAG ACCACAATGGAGGAAACCATGCCCGGTATCAGCATGCGCTACATCGTCGACGACGTCGAC GCCGCGGTGGAATTCTACACAAGACATCTCGGATTCTCCGTCGCGCTTCGTCCCGCACCG AGTTTCGCCATCCTGACCAGGGACGGTTTTCGTCTGTTCGTCAGCGGTATGACGGGACCG GGCGGAGCATCTCAAGCAATGCCCGACGGGCGAAAGCCGGAGCCTGGCGGATGGAATCGT ATCCAGATCGAGGTCGGAGACCTGGAGGCGAAAGTCACCGCACTGCGCCAAACCGGTGCG CGCTTCCGCAACGAGATCGTGCAGGGCATCGGCGGCAAGCAGATCCTGCTCGATGATCCG GCCGGAAACCCGATCGAACTCTTCGAAGCGCCCAAGAGGTGAATGGGGCGACGCCGGTCA TGCGGTTCACCACGCGTTTTACGCCTCGCATCGGTGAACCGCACGTATGATCCCGGTCAT GCGCTTTGCCACGCATTTTGCGGCCAGCATTGCAAACCGACGCAGTATTTCGATTACGGC AGCCCGGCTTCGGCATCTCTCGCCCCAGGACTAGCCGGAACGCCTTGCCACCGGTGTGCG AGCGTGTAGTTTCGGATTCCCATCAATTCGAAGGCAGGGAAAACATGTCCGATTCCGCCG GCGGGCTCTCCGACTATGTTGGGATACTAGCCGTGTTTCTTCTCGTCGCCGCCAATGGCT TCTTCGTTGCCGCCGAATTCGCCCTGGTGTCGGTCAGGCGTAGCCGCGTCGCCGAACTCG CTGCGGCAGGCCGCATGAACGCCTCGGCACTTCAGCGCGCCGTCGACAATCTCGACTCCA ACCTTGCAGCCACCCAGCTCGGCATCACCATCTCGTCGCTCGCGCTCGGCTGGGTTGGAG AACCGGCGCTTGCGCACCTGATCGAGCCGCTGCTGTCCTGGTTGCCCGGGCAATGGGCGA CGGCGGGCGCGCATACTGTTGCCGTCGTCATCGCCTTCGTCATCATCACGGCCCTGCATA TCGTGCTCGGCGAGCTCGCGCCGAAGAGCCTGGCGCTTCAGCGCAGCGAGGCCACTTCGC TTGCCGTGGTGCGTCCGCTCGGTCTGTTCCTGGTGCTGTTCAAGCCGGCGATCTTTGTCC TGAACGGCATGGGCAACATGGTGCTGCGGGGTGTGGGTCTTCGCGCCGGAACCGGGGAAT CGTCGTTCCATTCGCCGCAGGAGCTTAAGCTGTTGGTCGCCGAGAGCCAGGAGGCCGGCC TTCTCAACCAGGTGCAGCAGCAGCTCGTCGAGCGGGTGTTCAACATCGGCGACAGGCCGA TCTCCGACATCATGACCCCGCGTCTCGACATCGAATGGTTCGACGCCGACGACAGCGAGG CCGAGATCCTGAAGACCATCCGCGAATGCAGCCACGAACAATTGCTGGTCGCCCGCGGCT CGATCGACGAGCCGATTGGCATGGTGTTGAAGAAGGACCTTCTCGATCAGGTTCTCGACG GCGGCAAGGTCCGGCCGATGGAGGTGATCAAGCAGCCGCTGGTGCTGCATGAGGGCACCT CGGTCGTCCGCGTGCTCGACAGTTTCAAGGCCTCACCCGTTCGCCTCGCCATCGTCATCG ACGAATATGGCAGCCTCGAAGGCATCGTCACCCAGACCGACCTGCTCGAAGCCATCGCTG GCGACCTGCCGGGATCCAACGAAGAGCCCGATATCGTCGTCAGGGAAGACGGGTCGCTCT TGATCGATGCGATGATGCCGGCCTTCGACGCCTTCGAACGGCTCGGCCTGCGCGATCGTC CGGACGCCGATTTCCATACGCTGGCGGGCTTCGCGCTGCATCAGCTCCAGCACATCCCCG AAGCCGGCGAAACCTTCGTCTTCGACAACTGGCGCTTCGAGGTGCTCGACATGGACGGCA TGCGTATCGACAAGATGCTCGCGACGCGCATTTCCGCGGATGGGGCGGAGGCCTAGCCGA CCGCCAGCGTCCAGAGCATCCCCGTAGCCGCGCAGGCTAGCAGCGTCGCGATCACCGAAG CCTTGAAGCGGAAGATTGCGATGGCCGCGGCGGCAGACAGCGCCATTGCCGCCGGCACGG CCGATTGCAGCACGGGAATATCGAGCCGCAAGCCGCCAAGCTCGACGGTCGCAACCTCGG CAAACAGCGTGTGCAGGGCAAACCAGATAGCGAGGTTGAGGATAACCCCGACCACCGCCG CTGTTATGGCCGACATCGCACCGGCGAGCGCAATGTTACCGCGTAGTTTTTCGATGAACG GCGCGCCGAGGAAGATCCAGAGGAAACAGGGCACGAAGGTGACCCAGCTCGTCAGGATCG CCGCAAGTGTTGCAGCAAGCATCGGGTCCAGCGCTCCCGGATCGCGGTAGGCGCCCATGA AGCCGACGAACTGGACGACCATGATCAATGGCCCCGGCGTCGTCTCGGCCATGCCAAGAC CATCCAGCATCTCGCCGGGTTTCAGCCAGCCGAAATGCTGCACGGCCTCCTGCGCGACAT AGGCAAGCACGGCATAGGCCCCGCCGAAGGTGACGACCGCCATCTTGCTGAAGAACAGGC CGATCTCGGTAAAGACGTTGTCAGCACCGAAGGTTGTGTAAAGCGCCGCGAGCGGCGCGA GCCAGAGGGCAAGCAGCACGGCCGAGATGCGCAGCGACCAGGCGAGATTCGGGCGCGCAT GCGCCGGTATGCCCTCGCCGAGCGCCGACTCGGCGTCCGACAGTGTCGCGCCGCTTCCGG CCTTGTGGCCGCCGCCCATCCGGAAGGCGGCAAGTCCGAACCTGCCGCCGAAGAAGCCGG CGATGCCGGCGGCGAGCACGATCAGCGGGAACGGCACATGAAGAAAGAAGATGGCGATGA AGGCCGCGGCCGCGATACCGATCATGACGCGATTCTTGAGCGCACGGCCGCCGATGCGGA TGACGGCCTGCACGACGACGGCAAGCACCGCCGCCTTCAGCCCGAAGAACAGGCCGGCGA CGATGCCGACATTGCCGTAAGCCGCGTAGATATAGCTGAGACAGAGGATCGACAGGAACC CAGGCAGTACGAACAGCAGGCCGGCGACGAGACCGCCCACTGTCCGATGCATCAGCCAGC CGATATAGATGGCGAGCTGCTGCGCCTCGGGTCCGGGAAGCAGCATGCAATAGTTCAGCG CATGCAGAAAACGGTGCTCGCCGATCCATCGCTTCTCGTCGACAATGATCCGATGCATCA CTGCAATCTGGCCGGCGGGGCCGCCGAAACTCAGGGCGGCGACGCGCAGCCACACCCTGA AGGCCTCGCCAAACGAGACGCCGTGATGATGCTCCTCTCCCGCGTCCTCCTCCGCCGTTT TGCCGCCGGGCGCATTATCCGTCATCTCGACCATCTCATGCCCTCTTCTTCGGCGCCGGC CAATTGTGGGTTTCCTCGGTCGCATCGCGGCACCAGCGGAAGAAGGCGTCGTAGAGAAGC ATCCCGGCCTCGAGCTGTTCCAGATCGTCGGAATACATCCTGGAGAGGCCGAGCGAGGCG GCCAGCAGGCCCGCCGCCTCGGGCGCGAGATCGAGCCTTGCGGTATCCGCCGCCCTGACG ATCCGCGCCAGGCGCAGAAGCGGTTCCGAAGCCAGCCCAAACTCCTCGATCATCACATCG AAGGTACAGAGCTCGCCGCGATGGCTCCAGAACCCATCCTCGATATCGAAGGGCGTCGCC CCGAAACGCTCGCCGACGGCCAAAACCTCGGGCGCCGGCACGAACAGAAACACGGCGTTT GGATCGACGAAGCGCCGGATCAGCCAGGGACAGGCGATACGATCGATCTTCGGCCGCGCG CGCGTCACCCAGACGGTGCGCTCTTCAGCGTCATGTTGCGGCAGCTTTGCATCGGGCACG GCCGGTCCACCCGCGATCCACGCCTCGAAGCCACCTTCGAGGCTTTCCGCGTCGATCCCG GCATGGCGGAGATAGGCGGCAACACCATGACTAAGCTTGCCGCCTCTCTGGCATACCACG ACGACGGCTTCGGCATCGACGCCGCCAACCCAGGACGCGACATCGGCATGGGCGCGCCGG ATCGAGCCCGGCACCAGACGCGGATCGAGCGCGAAGTCCTCCTCCGTGCGCACGTCGATA ATGACGGGAGCCCCAGGTGTCCCGATGAGGCGGCTGAGCTTTTCAGGTGAGATTTCTAGA AATGACGGCATGACGCGTCCCTCCGTTGATCGGTTTTACTGGACGCGATTCTTCAGCATG ACGCCTCGTGGGGTGATCGCGACCCCATGGCCAAACCATGCGCAAACAGACCCCGTCGTG TCAAGCGCATTACGCCATGGCGGCTTGCCGTCCGCGGCAGCGGCCTGCCATCCACCACGG CACCCGATCAGCCGGCAGCTCTTCCACGGGGTCTCTGCCGGTCGCCTCCAGGCGAGCCGG CAGGCAGATGAGAGGTGAGCGGCAAAGCCACGAATGCACGGAGCGCCATCAACCAGCGGG AATGAAGAGTACGAAAACCCAATCAGCACAAGCGCTTCGGCCCAGAACGGAACAAAATGC CCACTTCGGCATTCTTCTCTCACCGAAAGAGGAGAAAGTACCATGACGTACGACCCCAAT AATGCCAACGACCCGAACCGCCCGCTGAACCCAAATCTGGATCTGCGCACCACGCCGAGC GCGCGCACCAATAATACGTGGGTTGTCTGGGCCGCTGCATTGGCCGTGATCGCTGTCGCT GCATTCGCCTATTCGCAGTGGAGCACCCCCGGGACATCCCCGGACACGACAGCTTCCACG ACCCAATCCGAGCCGGCGCCGGCCAAGCCGATCGCTCCGACCGACAACAGCGCTACGCCC GCACCGGCACCAGCACCGGCCACTCCGCCGGCTGCCCCGGCACAGCAGTAATCGCCGCTC GGCCAGAAGAAGCCGGCCCAGTGCCGGCTTCCTTTCAGCCGCGAGCTCTTGAAGTTTTTT AAGAAAACCCTACTTAAGGGATAGCAAATCTGTCTCTGACGGCTGACCACGGAGGTACTG GCAGCCGTTATCGAGACTGATCGAGGAAGGTCGGTGCGAGTTTCGCCCGGCCTTTTTTCT TGACCTCGTCATCCATGCCGAACAGGCATTCAAGCTGGCGGCATGATCGAAGAAATTCAA GGTCATCGCTTCGTCCCGGCAACGCTTGGCTCCGATATTACTTGGGAATCCTGTTATAGA AGGACTGCGGATCGTACACGCACTCGTAGTCGAGGAGGCAAAGCTTGCCATTGGCATCCC TCACCCTTGCCGTGTCGTACTTGTCGCCGAGATTGCACCTAGCCGGCGGATAACGGAAGC TGCGGCCGCCAAAGCCCATGCGCACAAAAACCGCCTTGTCCTTTCGGATGATCTGCGCAA GCTCTTCGCAACTGTGATCCCTGGCATTGACCTCCACCGCCTCGACGGCAAGAGCGACGG ACGGAAACAATAGTGCGACGGCCAGAACAACGCTTTTCATGGAAACTCCTGAATGTGAGA GAGCGAAGTTAGGGCATCGCACCGCATGCGGCCAGTCCCGAAACCCTCCGAATTCCACGC CTGAGCACAGCCGCATGCACTTCCCGCTCGCTGCCTGTCTCAACCGGAAGCGCCGAGAGC GCCGTGCGTCCTTTCGGACGCACAAAGCACGATGCGCTAGGGAAAATTATAAGGCGACGC GGGGTCAAAGACGCAGGCATAATCAAGGATGCACTGATTTCCACCTGCATCGCGCAAACT GGTCGTGGTGCGCTTATCGCCCATGCTGCATTGGGCGGGCGGATAACGGAAACTGCGGCC GCCGAAACCGACGCGAACAAAGACCTTTTTGTTCTGGCGGATGATCTGCGTAAGCTCGCT GCAGCTATGCTCGCTCGCTTTGACGTTCATGACGCCTGCGCCAAAGGCGGGTAGCGGCAG AGTCAAGGCAACGACTAGAATGACGCTTCTCATGGGACCCTCCCAGTGTGTGTGAGGGAA ACTAGCGCGCGCAGATCACTGCGACCAGTCCTTTGGGCAAGGCTAGCAATGCCGCCTGCT TCCAGCAGGCCGGAAAATCCGGCCTGAGTTCAAATACATCAATCTTTTCAAGAGATTTGG TGGGTGATGTAGGGCTCGAACCTACGACCCGCTGATTAAGAGACACCGGGTCGCTTATTA TCGGGGATAATGTCAACTCCCTGAAAAATCGAAGAAATCCTACCGCTTGGGCAGCGGATT AAATGCCGTCTTGGGACTTTTTTCGGGACTCCGCGTTATTTTCGAGCGCTGAGGCAACTT CGTCGTCCATAACGTGAGCGTACTTTCCCGTCGTCGTTAAACTGGCGTGGTTAAGCAACC GCTGCACGATCTTGAGATTTTTCGTTTGCCGCAGAACCTTCGTCGCCGTGTCATGACGAT TGTCATGAAGCCGAAAATTCACGACGCCCGAGGTTTTCAAATTTCGCCGCCAACGGGTCT TCGTCCCATGATATGTCATCGGGTAGCGTTGCCCCTCCGTCCTTCCTTGCTGTGTACGAG CGGCGACGAATGTGAACACGAATTCTTCGTGGTGTCCCCGGCATGCTTCCAGTATCGCGC GGATGCTTGCAGTTATGGGTGTCCAAACCTCTCGCCCCCCTTTGCCAAAAGTCATGATCT CACCAGCCTCCCAATTTACATCCGGCCATTTGATCAACGTTTCGTGGAACCTCCTGCCGC TTATTTGAAGGAAGTGAAACCAGGGGCGATAATCCTCTCGAATACACTGTTCAAGCGCAA GCTGTTCGTGCGCATGAAGTTCGCGTACGCGTTCGCGTGGCTCCTTCAATAAATGTTCCT TCCAGATCGGTTCATTCGGAAGTGGGTAGCGCCATAGCGTTTTCGCTCGTCTGAATATGG TTTTTAGTGGAACCAGCGTCTCACGGTTTATTGTGGCGTTGGATAAGGTCTTATTGCTCC CATTCTTTAGAACCGTTTTCCCCCACCGGAGCTGTTGTCGTTTGTGGGCAACGAGGCGGA TAATTGCATCGTCGTCAATATCGTCTAAGCGGCAGTCTTTTCCGAAGTAACTCACCAGCC GTTCGAGCGAAGCGAAATATTTCGTGTTGTTCGAGAGATGCTGTGCAACCTCGGTCCAAT AGCGACCAACGGCCACATCGATCGTCAGTGGAGCGTTGCCCGTTTTTCTTCTCTGCGCAG CGTCTTGCTTTGCCTTCTCCTTGAGCGTGCGCTCTATTGCCTCCGCATCTCGCTTGTTCC TGGCTTTGGTAGAGCCGTGAAAGCGATCGCCGCTGACTTGAAAGTCGTAGAGGTAGTACG GGCTCGCCTTGGGTTTATAGACGGACATGTTGAAGCCTCCAATGGTTGACGGTTACGCAT GAAATCGGTGAGCTGAGAGATCGCGAACCTGAGATGGACCCGGCGTTGAGTGCCGATGTT GACGCAACGCAGCTGACCGTTTGCAACGTGTCGCCGTAGCGTCTTGATAGATATCGCGAG ACGAGCCGCAGCTTCAGCGGCGGTCAGCAAGCGCTCGTTTGCCAGTGGTGTTAGCATTTG CCGTTCTCCGCTCGGAACCAGACCTCAAGGGGAGAGGTCGACCCAGCAAACTGTTGCCAG ATGGCAACAGTGGGAGATGTTGCTCGCCGTTCAAATATATGTAAAGATCAACTTTGAATG CACCACAGCAGAGTCTTCAGATTGATATTAAGGTAATCTCTAGAAATAATATTTATATTA TGTATTATTTCCTTTTCCGGAATACCACGCGAATTTAAACAGAATTTCCTTGGGGGCCGT TGTTTTCGTTACCTAAAAAAATGTCACGTTGATTTTTTCACGACGACGCGAATCGCCTCT CTATCGCAGCCCCGCGAACAGGACGACAAGTCTAGTAACTAATTATTGCAATTCGAAATA ATGTCGTGATAGACAATGACAGCGTGTGAAATTCAGTCTGCAGGCAACCAGAGGAAACAG AGTCGTGAGAGCGTGTAGGCGCTCAGCTGTAGTGGTACCAGAAACGTCAGAGCGCGATTT AAGAGGTTTCAGTGTGTAAATGAAGCCGCCAGAGACCGCTCGCTCGTCACGCAGAAGGCC GAACGCCCGGGGCCAACAAATCCTTTTTTCCAAAACCAAATCGCAGTCGAACTCCCGCAC CTACGTGCTCATCCTCATTCAGGATAATTACCCCCTGCTCGAAAAGCGCATCCCTGAGTC TTCGTACAGACTGCTCCGGCGTTCTACGAAGTTTCCCGCCCTCCACCCTGGCGATGACGT ATCTACCCACGCCCGACTTTTCTGCAAGGTCATCCAATGAGTACCCCAGCATCGCCCTGC CATGACGCAGGCAATCAACCCAGAGCTTACCGCTCGGCTCCTTCCATCTAACTCCCTCAC CAGCATTTTCGGTCGCGTCGAGAAGACTGAGCCCTTCGGCCTCGATGGCGGCCCGTAAAT GAAACAGCGCCGAGTTGTCAGGGAGCTTCCGGCTCGGTCGTTCGAGTCCCAGCAACACGC TTCTCGTAATGCTGGCTTTGCTGGCGAGTTCGCTCTGCTTGAGTCCAAGCATCGACCGTG CCGCTCGTATCTGACTGTGAGTTGGATAGCCCGCCATGACGCGGACCAAATGCCAACCTA CGAAAATGTCAACATATCTACAATGATTGCGGCAGTAGGCATTTTATTGCTCGTTTCCTA CTTTTGTTGCGCGAATCGGTTGCCATCGTTATTAAGGAAACCAAGATCGAATCAAAAGGA GCCCCTAGATGAACGACAAATGGCTTGGAACCCCGCCCTTCGTGATCCTCCCGCGACTGA GGTCGCTGCTCGCTGATCTCGAACAACTTGCCCTGCCCGGCAGCCACCCAGTACCGAACG AGCTTGTCAACATCCGGAATTGTTTTGTCGCGAGCCGCGCGGTGCCCTGCTTGATGGGCG AGATGAGCGGGCACCCGTCTATCAAGGACGGTCCCGGCATCACCTCCGAGCTGTTTTATC TCGACGGGAAGCGGAAGCTCGCGCGGACGTTGAGCCGTTGGTATCGGTTCGACGAAGGCC TCATCTGATCCCGGCGGAGAATATCGATGGATACGGCCTTTAAGGACAACCTCGACGCAT ACATCACCAAACTCCAGCGGATCGCGATCCAGCTGAACGGATTGCGATCCGCCCGCCCCT TCAAGGCTCGTCGTGAAGGAGCAGCACTCGCGATGAAGTCTACGCGCCTTTTCTTAGCTT ATTGTGCATTGGTGAGCCTGGTCCGCCGAAACATCGAGCCGATCTGTAATCCGTTTTGCG TTGGGCTCGTCGCGGTACCAGCCGCATGGCAGTTGAACGATATCCAGGAGGCGGCGAAAA TCATCTTCAAAGATGAGAAAGTTCGCTTTTGCCTACATCCGGCGTCTAAGAGTCGGCGCG GTTGGGAGATTGACCCTGCTGAGCATCTCACGTCAGGCAGATTGATCGTCTTCGTGACCG AGGGATCGACAATCCATGAGGATTTCGAACTTGCGGCAACGGTCCGTGACCGGCTCCACC TGTGTGATCCCCGCCACCTTCGAGCGCTTGGAAGACTCCGGGGCTGCGGAGTCCTCTCCG ACGATCAGGTTGCGGTAATCGCAGAACAGCCTTCAGAGCGGATGGAAGCCATCTTTCGGA TTGGGCAACCGGTCGAGCGGGCAGCGATGCGGCTCCTGAAGGAAGGCAAACGACGCCTCC AATCGACCGAAGCCAAACGGCTTGACGTCTTCAAAGGCTTCGGTGAGGCGTCCACCTGGG CAATGGAGCTGAAGAAAGACCTCCAAGATTGGCGTGACGGCAAACTTGCCTGGTCCGATG TAGATAAGGGGTTCCTATTGCACGGACCGCCCGGCACAGGGAAGACGAGGTTTGCGTCAG CGCTCGCGGCGGAGTGCGAGATGCATCTGGAAGCCACGTCGATTTCAAAGTGGCAGAGCA GCAAAGATGGTCACTTGGGCGATATGCTCAAGGCAATGTACCGATCCTTCGCGAGCGCCA AGGAAAATGCGCCCTGCCTATTATTTCTGGACGAATTTGACTCCATTGGCGACCGTACAA AATTCGATTCCAGACACGCTGATTACAGCATCCAGGTGGTAAACGCACTCTTGGAATGCC TCGATGGCGTCGAGGGAAGAGAAGGTGTGGTCGTCGTTGGCGCTTGCAATCACCCCAACA GAATCGATCCCGCGCTCATTAGAAGCGGTCGGTTAGAGAAGCATGTGTACTTCCCCTTGC CGAATGCGGAAGCCCGGGTCGAAATCCTCGCTTTCCATCTCCCATCACTCGCCGAACATC CTTCCTTGAAGGAAATCGCCGCCAGACTGCCCGGCAAGAGCGGTGCCGATCTAGAGCGCC TGTCGCGGGATGCCCGTCGAATTGCGCGGCGGGAGCACCGGGCCGTCGCGATTGACGACC TTCTAAGGAAGATCGAGCCATTGCCTGTTCTGAACGATGGCTACCAACTGCACATCGCAA TACATGAAGCTGGTCATGCGCTTATCGCTCACGCCTTGCGCGTTGGGAGAGTCGAGCGAG TTGAGGTGTTCGATAACGCCCAGAACTTCGCAACGGACATCGATGCGCACGGGATCACTG TTATCGAGTACCCAAGGTTACCCTTCAGAACTAAGGGGGAAATGATGAACCTGGTCGCCA TGCACCTGGCCGGGGCGGCTTCGGAGGAAGTCTTTTACGGAGACCGGTCGACCATGGCTA CAGGTTCGAGCCAAAGCGATTTCGCAATGGCAACGGAACTCGCCGTCGAAATGATCACGA AATACGGCTTCGGTACGTCGCCCTACTATCTCCCCGGCTCTGTAAACCCGAGCAACGCAT CGGAGCTGTGGCGAGATCGCCGACTGAGAGCGGAGGTCGATGGCATTCTTCGAACCGAGT ACGCGCGGGCAAAAGACATGCTCAACGGCCTGCAGCACACGCTTGTGAAATTCGCTGGCG AGCTGGCCAAGCACAAGCGACTGCAAGGAGATCAGTTGGAAGAGCTTTGGCCAGGAGCAA CAGCCTTGGATCAGACGGTGGCAAGGAATTGTTGACCGGTCTTTTCGTCTGCATTTCCTT GGGCAGGAGCAGAGTTTCCTCTCGCGGTGGTGCGGGCCGTGGCATTCGACCTGAACGAAC AGTGCCTGGCGATGCGCCCATGAAGTCTGGCTGACGCAGCCAATTCCCAAAATTCTGAAC CAGAAGGACAGCGGCGGAAATTCCGGCGCGTCATCCCCACACGTATGCCTTCACGAAAGG AACGACTCAGTGCGAGCTTGGATCATCAGTGACCTTCACTACTCCCCCATGGATGCTCTC GTGGGCGCTCCCTTTCGGATTCCGGATGCGGACATCTGCATCTGCGCAGGCGATATTTCG GAGAACGTCTCAACGAGCATCGCTTACCTACGCCGCGATATCGAGCGGCATATGCCCGTC ATCTTAGTCCTGGGAAATCACGACTATTACAAAAGCAGCATCGATCTTGCGCTGGAAAGA GCACGCCGCCAGGTCGAGGGGACTCGAATTCATCTCCTTGAGAATGAGAGCCTTGAACTC GATGACTACCTGTTTATCGGGGCAACGTTATGGACGGATTTTTCGGTCTCTATAGGTGGC GACGAGCACCTTTCTCCAGACGAACGGAGAGCTAAGGCCTTCGGTCTGGTGCCATCTCAG ATGGCAGATTTCAGTTGCATTTATCGATCTGGCCCACGGCGTATAGGCGAAAACGGCATG GTGACGGTTCAAGAAATCCTTGGGCGTCACAGAGAAAGCCGAGCGTACATCGATAGGGAA TTGGCGAAGCCTGACGCCGGTCGGACAGTGGTCGTCACACATCACGCGCCGCTTACGGAT AGTTTCGACGCACGATTTTACGGCCAGGTGACGAACGCTGCCTTCGCCAGCGACTTATCT GACCTGATTTATCGACGGCGGCCCTCTCTTTGGGTCCATGGTCACATTCATCGGGCGCGA GACTATTTGTCCGGCGACACGCGGATCATCTGCAACCCTCGTGGCTACGGAAGCGAGCGG GAAATAAACGGCTTCCGCGCCAATCTGATAATCGACCTATAAAAAGCGTCGAGAGGTTAC GGGTCGGCAGTCTCAGGCCTTCCTATCATAGACCGAGCAGCGACGCCTTCTGCAATCCGA ATGTTTCGATAGCAAAGGATAATTTCGGCCAGTTGTTGAAGCTCGGCATCCGTCGACTTA GCGCAACAATAGCACTGACGTTCGAAATGTGTTTTAAGTCGCTCGGCGACAATTTGTACT TCTCTGGTGACTCCACCCCCGATTCCTTCGAGGGAGTCTCCCTTCTCTGGCATTTCGTTC GCTTCCTGCTCAGGCCAAGTCTGCTCCAAGTCTGTTCCGACCGTCACGCCAACAATCGTA ATGGTACGGGAAAGAACGAGCGGAAAATTTCGGCTTTTGAAACCGGAAGCTGTGAACCAA TTGTCCGAGTCCGACCAGAAAACTGGAATCCATGTTTTGTTCATGATCAGCCCACGAGCG TCACATTTATGCTCTGCTCTAATGATGGCCACCGCTCGGACAGTGAGATCGGCCTGGAAT ACCGGGAGGACGCCGTTTCCAAAATGATTGCGGGAGCGAGGAATTATACGGGATTTCATT GCTTGCGGGTTTGCCCGCATCAGTTCCGTCACTCGCTCAGAGGCAATAATGTCGCAATTA GTTCCCGGCTCGACCCACTTTAAGGACATGGCGGAGGCAAAACTCACCTCGGGAAGGGTG TTGCTTCCAAGGGGGACGTCGGAAAACCACCGCCGATCCAAAGCGTCAATTTGCTTGCCG ACAATCAGCTGCATTTTTGCGTCGGCTTTCTGGACCGTCGGAGCTTGGATGTAGATCGTG GCGGATAATTCGACGGGGATCGAAAAGTAGTCCATCTCGTAAACTCGTATGCGGTAAGGA AATGGTCATTCGGACAGCGCCCCCTGTCAATAACCCATTGTAAATTCTGCCAAGGCTCTA AGGAAATATGCTCGAAATAATGATGCCCACCTCGCTGCTCGTTGTCTTAGCCTTTGCGGG TTATTCGTGGTCCATTTGCCTGTGGAACGCGTGGGAAACGTGGGACCAATTTCTCAACCA TAAAAACAAAGTAGAGATGTATGAGAACTGGCAGGTGGAGCCAAAACCCGTTCGACCGTC TCTCGCAAATGTGATTTTGCTAGGATTTCCTACGTTGGTTGGCTTTGTGGCGCTCCCTGT CGTCGGCGTGGTAACGCTTCGAGCGTTCGGCATAGTCGTTTAGTCGATACAAACGGCTCC GGCAAACCTGCTAAATACGTAAACCCCAGCGGCCTATTGGATACGCTATTCAGCTGCCGC GCAGACGTCCCCGTCTTGAAAGCCCGTCGCATTCAAGATCGGTTTCAGCCCCACGAGAGC GTCGGAAGGTACCGCGAGCACAAAAACGTTCCGTGCCCTGGTCAGTGCAACGTAGCCAAT CTTGCCGTTTTCGGTTTTTGTACCCGCCAACAGTTCTTCAATGTTGCTCTTGCTGGCCAC ATACATGACGCCGTCGAGGCTTTCGCCCTTTACTTTGTGAACAGTCGATAGCCTGAATTT AAGGTTCTGGGCTTCCTCGCCTTCCTGAGCGTTGACCAAAGGTCCGTTCGGGAGCGCCGT CTTCTTCAGTCGGTTTCCAAGGTTATCGCCGGGAGTGACGCCATATTGCTTCTCCAACCG TGCCAATAGAGCTTTCACTCGGACCACCAACTGGGGGTGCCATTCTTTAACTGCATCCAG CTCCGATGAGGGCAATCCCGTGGCCGGATTTTTCACGAAGTTCCAAATTTCTCGGCGAAC GCCGCGTAACTCTTGAGAGGCTGTCCGTCCTCTAATCAGTGAAAGCAGGTCTCCATGGTC ATCATCCAGCAAGCCAACTATCCCGGCACACGCCTGCGAGAAAGCTTGGTCAAAACGCTT GGCTTGGTCTCTCCATCTCGCGCTGGCGACGAAAGACTTAACAACGCCCTGGCCTTGGGG ATCGCCCGGCCCGCTCCAGGTATTGAAGACTTCGCTCGAACGGAAGACGACAACTCCTTT TGACTGCGCAATACTTCCTTTTTCAAGCAACTTTTTGAACCGTAGCAGCGCCTCATCGCG CTTGTTGTGATCGACCGCAATGTAAAACGCCCCATTGAGTTCATCGGGAGCAGGTCGATC CGGCTCGTCTTTTCGGCCGGAAAGTTGATTTGCAATAGTTACTATCGACGGCACAGACCG GAAATTTCTGTTCAATTCCTTCGCGGTTACGCCGTGTCGGCTATGATAATTTCCAAGGAA ACCTCCCGTCGCTCCGGTGAACTCGAAAATCCCTTGGTTCACATCGCCAATTAGTGAGAG TTTTGCCCCTGCATCCGAAATCTTCTCAAGAAGCGCCTGATGGATCGTTCCGATATCCTG CGCTTCGTCAACCAGGATATGGGAATAACGTCGCGATATGGCGCGGAGAACGAATGGGGC TTCGTTAAGAAGCCGATATGCCCAGTAACGGGCACTTTCATGCGTGTAAGCGCCAATCGC TCCAATCTTCTCCAAAGCCTCTATTGCAGGCGTTCGGGCAATCGCCGTCCCGGCCCATTT TCCTACTCTAAAAGAAAACTTCCCGCCGTCCATGCTGATCCGCAGGTCGGAAGTCTTCGC AGGCTTAGAGCCGTCCCAGACGGTGAAATGCTTCAAAAATGGCTCTCGCCCTTCGACAAG AAATGGACATCTATCGCAGCCCATGACGAGATGACCGTGAGGTCTCAGTAGATTTTTAGT GAGAAAGCCATCGACAGTGTCGATTTCGACGGTGGGGCCTCTCCATCGTTTGCCGTTACT CACCAATGAGCCATACTCGCGCTGGAACGTCTCCACCGCCACGTTGGAAAACGATAGCAG AAGGATGCGCCCAACCCGGTCGGTCAACAGCTTCTGCATCGCCGCAACGCGATGTACAGC CGTCTTGGTCTTCCCGCTGCCTGCACATGCCGAGACGACAAACGACTCAGCTGGCAGTTC TACGATTTCTTTCTGGGCCTTCGAGAGTTTCTCTACAGCTGACAT
Region Details
| Region | 1 |
| Region Length | 19.1Kb |
| Completeness(score) | incomplete(30) |
| Specific Keyword | integrase,plate |
| Region Position | 2773128-2792252 |
| # tRNA | 0 |
| # Total Proteins | 8 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 2 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | yes |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Sinorh_phiLM21_NC_029046(2) PHAGE_Bacter_APSE_2_NC_011551(1) PHAGE_Cronob_vB_CsaM_GAP32_NC_019401(1) PHAGE_Acidia_virus_NC_029316(1) PHAGE_Phormi_MIS_PhV1A_NC_029032(1) PHAGE_Pectob_CBB_NC_041878(1) PHAGE_Bacill_Shanette_NC_028983(1) PHAGE_Azospi_Cd_NC_010355(1) PHAGE_Caulob_Cr30_NC_025422(1) PHAGE_Bacill_0305phi8_36_NC_009760(1) PHAGE_Entero_UAB_Phi20_NC_031019(1) PHAGE_Bacill_JL_NC_028982(1) PHAGE_Bacill_G_NC_023719(1) PHAGE_Caulob_CcrColossus_NC_019406(1) PHAGE_Rhizob_vB_RleM_P10VF_NC_025429(1) PHAGE_Phormi_MIS_PhV1B_NC_028998(1) PHAGE_Bacill_CP_51_NC_025423(1) PHAGE_Burkho_phiE202_NC_009234(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 25% |
| GC % | 57.98% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|SIKU01000001.1| Rhizobium leguminosarum strain SM39 chrom_SM39, whole genome 4919599, gc%: 61.13%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 10 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 2773128..2773140 | attL | 0.0 | Showinfo_outline |
| 2 | complement(2783386..2784495) | PHAGE_Sinorh_phiLM21_NC_029046: integrase; ELG91_14235; phage(gi981221036) | 1.35e-120 | Showinfo_outline |
| 3 | complement(2784381..2784704) | PHAGE_Sinorh_phiLM21_NC_029046: excisionase; ELG91_14240; phage(gi981221037) | 6.19e-12 | Showinfo_outline |
| 4 | complement(2785234..2785719) | PHAGE_Azospi_Cd_NC_010355: hypothetical protein; ELG91_14245; phage(gi168495167) | 3.32e-07 | Showinfo_outline |
| 5 | 2785916..2786215 | hypothetical protein; ELG91_14250 | 0.0 | Showinfo_outline |
| 6 | 2786234..2788222 | PHAGE_Acidia_virus_NC_029316: AAA+ ATPase; ELG91_14255; phage(gi1002166819) | 1.19e-13 | Showinfo_outline |
| 7 | 2788437..2789249 | PHAGE_Pectob_CBB_NC_041878: baseplate distal hub subunit; ELG91_14260; phage(gi100102) | 1.15e-29 | Showinfo_outline |
| 8 | complement(2789264..2790082) | hypothetical protein; ELG91_14265 | 0.0 | Showinfo_outline |
| 9 | complement(2790513..2792252) | PHAGE_Bacill_CP_51_NC_025423: putative helicase; ELG91_14270; phage(gi725949597) | 7.69e-10 | Showinfo_outline |
| 10 | 2790548..2790560 | attR | 0.0 | Showinfo_outline |
Sequence
>2773128..2773140
AGCCCGTCGCATT
Sequence
>complement(2783386..2784495)
RhizobiumleguminosarumMSVYKPKASPYYLYDFQVSGDRFHGSTKARNKRDAEAIERTLKEKAKQDAAQRRKTGNAPLTIDVAVGRYWTEVAQHLSNNTKYFASLERLVSYFGKDCRLDDIDDDAIIRLVAHKRQQLRWGKTVLKNGSNKTLSNATINRETLVPLKTIFRRAKTLWRYPLPNEPIWKEHLLKEPRERVRELHAHEQLALEQCIREDYRPWFHFLQISGRRFHETLIKWPDVNWEAGEIMTFGKGGREVWTPITASIRAILEACRGHHEEFVFTFVAARTQQGRTEGQRYPMTYHGTKTRWRRNLKTSGVVNFRLHDNRHDTATKVLRQTKNLKIVQRLLNHASLTTTGKYAHVMDDEVASALENNAESRKKSQDGI
Sequence
>complement(2784381..2784704)
RhizobiumleguminosarumMLTPLANERLLTAAEAAARLAISIKTLRRHVANGQLRCVNIGTQRRVHLRFAISQLTDFMRNRQPLEASTCPSINPRRARTTSTTFKSAAIAFTALPKPGTSEMRRQ
Sequence
>complement(2785234..2785719)
RhizobiumleguminosarumMLGLKQSELASKASITRSVLLGLERPSRKLPDNSALFHLRAAIEAEGLSLLDATENAGEGVRWKEPSGKLWVDCLRHGRAMLGYSLDDLAEKSGVGRYVIARVEGGKLRRTPEQSVRRLRDALFEQGVIILNEDEHVGAGVRLRFGFGKKDLLAPGVRPSA
Sequence
>2785916..2786215
RhizobiumleguminosarumMNDKWLGTPPFVILPRLRSLLADLEQLALPGSHPVPNELVNIRNCFVASRAVPCLMGEMSGHPSIKDGPGITSELFYLDGKRKLARTLSRWYRFDEGLI
Sequence
>2786234..2788222
RhizobiumleguminosarumMDTAFKDNLDAYITKLQRIAIQLNGLRSARPFKARREGAALAMKSTRLFLAYCALVSLVRRNIEPICNPFCVGLVAVPAAWQLNDIQEAAKIIFKDEKVRFCLHPASKSRRGWEIDPAEHLTSGRLIVFVTEGSTIHEDFELAATVRDRLHLCDPRHLRALGRLRGCGVLSDDQVAVIAEQPSERMEAIFRIGQPVERAAMRLLKEGKRRLQSTEAKRLDVFKGFGEASTWAMELKKDLQDWRDGKLAWSDVDKGFLLHGPPGTGKTRFASALAAECEMHLEATSISKWQSSKDGHLGDMLKAMYRSFASAKENAPCLLFLDEFDSIGDRTKFDSRHADYSIQVVNALLECLDGVEGREGVVVVGACNHPNRIDPALIRSGRLEKHVYFPLPNAEARVEILAFHLPSLAEHPSLKEIAARLPGKSGADLERLSRDARRIARREHRAVAIDDLLRKIEPLPVLNDGYQLHIAIHEAGHALIAHALRVGRVERVEVFDNAQNFATDIDAHGITVIEYPRLPFRTKGEMMNLVAMHLAGAASEEVFYGDRSTMATGSSQSDFAMATELAVEMITKYGFGTSPYYLPGSVNPSNASELWRDRRLRAEVDGILRTEYARAKDMLNGLQHTLVKFAGELAKHKRLQGDQLEELWPGATALDQTVARNC
Sequence
>2788437..2789249
RhizobiumleguminosarumMRAWIISDLHYSPMDALVGAPFRIPDADICICAGDISENVSTSIAYLRRDIERHMPVILVLGNHDYYKSSIDLALERARRQVEGTRIHLLENESLELDDYLFIGATLWTDFSVSIGGDEHLSPDERRAKAFGLVPSQMADFSCIYRSGPRRIGENGMVTVQEILGRHRESRAYIDRELAKPDAGRTVVVTHHAPLTDSFDARFYGQVTNAAFASDLSDLIYRRRPSLWVHGHIHRARDYLSGDTRIICNPRGYGSEREINGFRANLIIDL
Sequence
>complement(2789264..2790082)
RhizobiumleguminosarumMDYFSIPVELSATIYIQAPTVQKADAKMQLIVGKQIDALDRRWFSDVPLGSNTLPEVSFASAMSLKWVEPGTNCDIIASERVTELMRANPQAMKSRIIPRSRNHFGNGVLPVFQADLTVRAVAIIRAEHKCDARGLIMNKTWIPVFWSDSDNWFTASGFKSRNFPLVLSRTITIVGVTVGTDLEQTWPEQEANEMPEKGDSLEGIGGGVTREVQIVAERLKTHFERQCYCCAKSTDAELQQLAEIILCYRNIRIAEGVAARSMIGRPETADP
Sequence
>complement(2790513..2792252)
RhizobiumleguminosarumMSAVEKLSKAQKEIVELPAESFVVSACAGSGKTKTAVHRVAAMQKLLTDRVGRILLLSFSNVAVETFQREYGSLVSNGKRWRGPTVEIDTVDGFLTKNLLRPHGHLVMGCDRCPFLVEGREPFLKHFTVWDGSKPAKTSDLRISMDGGKFSFRVGKWAGTAIARTPAIEALEKIGAIGAYTHESARYWAYRLLNEAPFVLRAISRRYSHILVDEAQDIGTIHQALLEKISDAGAKLSLIGDVNQGIFEFTGATGGFLGNYHSRHGVTAKELNRNFRSVPSIVTIANQLSGRKDEPDRPAPDELNGAFYIAVDHNKRDEALLRFKKLLEKGSIAQSKGVVVFRSSEVFNTWSGPGDPQGQGVVKSFVASARWRDQAKRFDQAFSQACAGIVGLLDDDHGDLLSLIRGRTASQELRGVRREIWNFVKNPATGLPSSELDAVKEWHPQLVVRVKALLARLEKQYGVTPGDNLGNRLKKTALPNGPLVNAQEGEEAQNLKFRLSTVHKVKGESLDGVMYVASKSNIEELLAGTKTENGKIGYVALTRARNVFVLAVPSDALVGLKPILNATGFQDGDVCAAAE
Sequence
>2790548..2790560
AGCCCGTCGCATT
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 4919599 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: attL (Region 1)
Locus: attLORF Start: 2773128
ORF Stop: 2773140
Strand: Forward
Protein Sequence: AGCCCGTCGCATT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 2: ELG91_14235 (Region 1)
Locus: ELG91_14235ORF Start: 2783386
ORF Stop: 2784495
Strand: Backward
Protein Sequence: MSVYKPKASPYYLYDFQVSGDRFHGSTKARNKRDAEAIERTLKEKAKQDAAQRRKTGNAPLTIDVAVGRYWTEVAQHLSNNTKYFASLERLVSYFGKDCRLDDIDDDAIIRLVAHKRQQLRWGKTVLKNGSNKTLSNATINRETLVPLKTIFRRAKTLWRYPLPNEPIWKEHLLKEPRERVRELHAHEQLALEQCIREDYRPWFHFLQISGRRFHETLIKWPDVNWEAGEIMTFGKGGREVWTPITASIRAILEACRGHHEEFVFTFVAARTQQGRTEGQRYPMTYHGTKTRWRRNLKTSGVVNFRLHDNRHDTATKVLRQTKNLKIVQRLLNHASLTTTGKYAHVMDDEVASALENNAESRKKSQDGI
Homolog/Ortholog Species: Integrase
Homolog/Ortholog Protein: ELG91_14235, integrase, phage(gi981221036), PHAGE_Sinorh_phiLM21_NC_029046
Homolog/Ortholog E-Value: 1.35e-120
Locus 3: ELG91_14240 (Region 1)
Locus: ELG91_14240ORF Start: 2784381
ORF Stop: 2784704
Strand: Backward
Protein Sequence: MLTPLANERLLTAAEAAARLAISIKTLRRHVANGQLRCVNIGTQRRVHLRFAISQLTDFMRNRQPLEASTCPSINPRRARTTSTTFKSAAIAFTALPKPGTSEMRRQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: ELG91_14240, excisionase, phage(gi981221037), PHAGE_Sinorh_phiLM21_NC_029046
Homolog/Ortholog E-Value: 6.19e-12
Locus 4: ELG91_14245 (Region 1)
Locus: ELG91_14245ORF Start: 2785234
ORF Stop: 2785719
Strand: Backward
Protein Sequence: MLGLKQSELASKASITRSVLLGLERPSRKLPDNSALFHLRAAIEAEGLSLLDATENAGEGVRWKEPSGKLWVDCLRHGRAMLGYSLDDLAEKSGVGRYVIARVEGGKLRRTPEQSVRRLRDALFEQGVIILNEDEHVGAGVRLRFGFGKKDLLAPGVRPSA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: ELG91_14245, hypothetical protein, phage(gi168495167), PHAGE_Azospi_Cd_NC_010355
Homolog/Ortholog E-Value: 3.32e-07
Locus 5: ELG91_14250 (Region 1)
Locus: ELG91_14250ORF Start: 2785916
ORF Stop: 2786215
Strand: Forward
Protein Sequence: MNDKWLGTPPFVILPRLRSLLADLEQLALPGSHPVPNELVNIRNCFVASRAVPCLMGEMSGHPSIKDGPGITSELFYLDGKRKLARTLSRWYRFDEGLI
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: ELG91_14250, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 6: ELG91_14255 (Region 1)
Locus: ELG91_14255ORF Start: 2786234
ORF Stop: 2788222
Strand: Forward
Protein Sequence: MDTAFKDNLDAYITKLQRIAIQLNGLRSARPFKARREGAALAMKSTRLFLAYCALVSLVRRNIEPICNPFCVGLVAVPAAWQLNDIQEAAKIIFKDEKVRFCLHPASKSRRGWEIDPAEHLTSGRLIVFVTEGSTIHEDFELAATVRDRLHLCDPRHLRALGRLRGCGVLSDDQVAVIAEQPSERMEAIFRIGQPVERAAMRLLKEGKRRLQSTEAKRLDVFKGFGEASTWAMELKKDLQDWRDGKLAWSDVDKGFLLHGPPGTGKTRFASALAAECEMHLEATSISKWQSSKDGHLGDMLKAMYRSFASAKENAPCLLFLDEFDSIGDRTKFDSRHADYSIQVVNALLECLDGVEGREGVVVVGACNHPNRIDPALIRSGRLEKHVYFPLPNAEARVEILAFHLPSLAEHPSLKEIAARLPGKSGADLERLSRDARRIARREHRAVAIDDLLRKIEPLPVLNDGYQLHIAIHEAGHALIAHALRVGRVERVEVFDNAQNFATDIDAHGITVIEYPRLPFRTKGEMMNLVAMHLAGAASEEVFYGDRSTMATGSSQSDFAMATELAVEMITKYGFGTSPYYLPGSVNPSNASELWRDRRLRAEVDGILRTEYARAKDMLNGLQHTLVKFAGELAKHKRLQGDQLEELWPGATALDQTVARNC
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: ELG91_14255, AAA+ ATPase, phage(gi1002166819), PHAGE_Acidia_virus_NC_029316
Homolog/Ortholog E-Value: 1.19e-13
Locus 7: ELG91_14260 (Region 1)
Locus: ELG91_14260ORF Start: 2788437
ORF Stop: 2789249
Strand: Forward
Protein Sequence: MRAWIISDLHYSPMDALVGAPFRIPDADICICAGDISENVSTSIAYLRRDIERHMPVILVLGNHDYYKSSIDLALERARRQVEGTRIHLLENESLELDDYLFIGATLWTDFSVSIGGDEHLSPDERRAKAFGLVPSQMADFSCIYRSGPRRIGENGMVTVQEILGRHRESRAYIDRELAKPDAGRTVVVTHHAPLTDSFDARFYGQVTNAAFASDLSDLIYRRRPSLWVHGHIHRARDYLSGDTRIICNPRGYGSEREINGFRANLIIDL
Homolog/Ortholog Species: Plate protein
Homolog/Ortholog Protein: ELG91_14260, baseplate distal hub subunit, phage(gi100102), PHAGE_Pectob_CBB_NC_041878
Homolog/Ortholog E-Value: 1.15e-29
Locus 8: ELG91_14265 (Region 1)
Locus: ELG91_14265ORF Start: 2789264
ORF Stop: 2790082
Strand: Backward
Protein Sequence: MDYFSIPVELSATIYIQAPTVQKADAKMQLIVGKQIDALDRRWFSDVPLGSNTLPEVSFASAMSLKWVEPGTNCDIIASERVTELMRANPQAMKSRIIPRSRNHFGNGVLPVFQADLTVRAVAIIRAEHKCDARGLIMNKTWIPVFWSDSDNWFTASGFKSRNFPLVLSRTITIVGVTVGTDLEQTWPEQEANEMPEKGDSLEGIGGGVTREVQIVAERLKTHFERQCYCCAKSTDAELQQLAEIILCYRNIRIAEGVAARSMIGRPETADP
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: ELG91_14265, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 9: attR (Region 1)
Locus: attRORF Start: 2790548
ORF Stop: 2790560
Strand: Forward
Protein Sequence: AGCCCGTCGCATT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download