Submission Results
Sequence Name: Not Available
GenBank Accession Number: SJXI01000056.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: SJXI01000056.1.PHASTER.zip
gi|00000000|ref|SJXI01000056.1| Frankia sp. BMG5.11 contig_55, whole genome shotgun sequence. 197399, gc%: 68.64%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.8Kb | incomplete | 10 | 10 | 37135-46010 info_outline | PHAGE_Synech_S_CRM01_NC_015569(1) | 70.62% | Show info_outline |
Region DNA
>1 37135-46010 TCACGCGGCACTGTCCGCCAGTGTTGGAAGCAGATCGCCATGCGGGCCGAGGAAGGCGAC GGGACGCCGTCGGAATGGACTGTCGAGCCGGTGCGTGGGCCTGCCGTCGAGACAGCGGTG AATCTCTTCGGCAATGGTCTTGGCCAACTGGACCGGGACAGCATTACCGACCTGGTCGTA CTGGCTGGATCGGTTGCCGTGGAACACAAAGCTGTCGGGGAAGCCCTGAATCCTCGCCGC CTCTCGGATGCTGATGGTACGGTCCTGTTCCGGATGAGTGTATTCGCCGGTCTTTGGATC TCTGAAGCGAGTCACGATGGTGCGGGGAACACCGTTCCACGACATCCGTCGGTATCGGCG GGTGTGGTCCTTGCGCAACGCTCGTTGCATACCTGCTGGGAGCAATTCAAACGGCAGATC GCGCCAGTCTTGGCCAGGCTTGAGGTGGGCAATCCTGACGAGGTTAGAATCAGACAGCTT TGCGGCGTAGTGGTTCCACAGCTCGTCGGTCAGACCAGCGCGCATCTCGCGCTGGTACGC GGTCGTTGCGGGCCCGACATACCGGTCGTTCTGCTTGCCAGCCTCGACGGAGGGCAGGTC GCCAATGGCGTCGTAGGTGGTCAGAAATCCGGCTGACTGCGATGCGGTGATGGTGCAGTT CGGCAGCAGGTCGCCGATTTCTCCACCATGGGTAGGGGTAGGAAAGCCGTAGCCAGCAGG AATATCGAGATCCTTACGCCACGCGATGATGACAAGCCGCCAGCGCATCTGCGGCGCACC GTACTGGGCCGCCAGCAACTCAGCACATGCTCCTGCGTACCCCGTCTCGGACAGGCCCTG CAAGATCGATTGGAGGTAGGCTCCGTTGCCAAGGGTGACTAGGCCAGGGACGTTCTCGAT CACGACGCACTTCGGACGCAGATCCTTCGCAGTCCGTAGGACCTCTCGGAAGAGGTTGTT GCGCTCGTCCCACACGACCCGGGACCCCATGACAGAGAAACCCTGGCATGGTGGGCCAGC GAACAGTAGGGACAGCTCGCCGGGTGCAATGCCAGCCGCACGGGCGATCTTCTCACTGTC GATGTCACGCAGGTCGCCAACCAGCACGTCAGCCGGCAGGTTGGCCTGGTGGGTCGATGC ATACTCAAGGTCGATCTCGGCGGCGAGCCGCAGATCCGCGCCAGCGGCTACCAAGCCGGC AGACGCACCGCCCGCGCCAGCAAACAGATCGATAGCGCTGAACGATCTGTTCGCCGCAGC GCCGTGACTGGTGCCAGCCAGGACGTCCGGCTGTGCTGCCCTGGCCGGGGCAGCGCCCTC CGTGCTCTCCATCGCGACCTCCTCTGAGGAGGAACGTAGCGGATGGGGCCGACAGGACAG CCCACATGGCTCGTGGAGGATCACTGCATGCCCGAAAGGTGGGTCTCGACACCGGCAGCT GCTGGCCTCCGTGGCCGGCGCAACAGCGACACCGAGCCGGAGCTGCTGCTACGCCGCGCC CTACACGCCGCCGGCGCCCGGTTCCGGCTCCACCGCGCCCTCGACGCCGGCTGCAACCCC GACCTCGTACTCCCGGGCCGGAAGATCGCAGTCTGGGTCGATGGCGACTTCTGGCACGGC TGCCCGGTTCACGGCCGGAGCGCGTTCAGCGGCCCGAACGCACCGCTCTGGGCCATGAAG ATGCAGCGCAACCGAGAGCGAGACGCTCGCGCCTCGGAGCTCGCCCGCCAGGCTGGCTGG ACAGTCGTACGGCTCTGGGAGTGCGAGATCCGAGCAAGCCCCACCGACGCGGCCCGCCGA GTCCTTGGCGCTGGCGATGCCTAGAGTGGGCAGATTTTCCCGATCGGCAGTAGAGCCTAT GCCTCCTCCCGCCACCCGGGGCGGTGTTGGTCCATCCACGCTTCGATGTCGACGCGGAGC CACAGCCGTTCCTTCTCGCCGGTGTACCAGGGCGCCGGGAAGTCGCGGTCGCGGGAGATG GTGTGCGCCCGAGAGCGGGCGACGCCCAGCAGGGCGCGGAGCTCGGCGAAGCCGACCAGG TCGGCGGGCGTCGCCGGTCGGGTCTCAGGTTCGTCGCTGCTGGCCACGGATCCGAATACT GGTTGCGGATCCGGATCCTCTTCTCGGGCTCTTCCTTCGAATCCGCTAACGCGCTACCGT GCCTGAGTGATCGCGTGTCGTACCCGACGCGCGGGAATGAGTGAGCCCCACCGGTTGACG GACCGATGGGGCTCGGTGGCCGACCTGGCTGGAGGTACGACCGATGACTTCATTCTGCCC TGACGCAAACGACACACCCCCATCCGTTACCGCAGAGGGTGAGGCCGCTCCGACGACCGT GCATGTCCGCGAGACGGGCACAGGGCCCTACCGGTGTGTGGTGGTCGATGTGCCGGCCGG TGTGCATCCGGCAAGCCTGGCCACGGCGTTGCGCAGTCTGCCGATCGCTTGTGAGTTCGT GGGCATGGAAGATCTGGCCGGCACTCGCGGCGGTGGTGAGCTGCGGTTCAGGGTCCACGA TCAGCATCCGCGTCTGACCAGCAAGCCCGGCGGCCGGGTGCTCCGGTTGGCCGATGACAG CCCGCTCGCCGAGTTCCTGAGTGCCTGCGGCGAGGGTGAGCAGCGGTGAGCGCGCGCATG GTGCTTCCGGTGACAGGCGCCCATCGTGCGCTGGTGGCGCGGCGGCGTGTGGCTGCGGCC GTCGAGCGGCGCCCGCTGATCTACGGCCTTGCTGTGTTCGACGACGCGGGGGCCTTGGTG GAGGTGGTGAGTCCGTTCGGGAGTGAGACTGCGGCGCGGCAGTGGGCTGACCTGTACGGC GTCGAGGCGTATCAGGTTTTGCCGGCCCGGATTGCGGGTGGGAGGCACTGAACCCGCCCC GGATGATCGGCCCTCTGCCCTGTCGGGTGGAGGGCCGTTCGCGTGTTCGGGGCGCAGCGG TGTTCCGCCTGGTCGGAAAGGTGTTGCCGGTGCGGGTGTGCCAGGTCTGCTGGCCGCTCG ACGTCGCGGACGCCCTGCGGACCAGTTACCGGCACGATCGTCATGTGACGATCGTGCCGG GTTGGCCTAGCATGCCTGTCATGGGCGATCGTCACGTGATGAACGGTCCGGCTTCGACCC AGGGGGTGTGCGGGTGTGGCTGCGGGCGGACGTGTCCGGCTGCGCCGGCCGGTGGGGGCC GGGTACCGCGGTACGCCTCTCACGGTTGTCAGCAGCGCGCCTACCGAGCCCGCCAGGCCG CCCGCACCGTTCCCCCGGCGGACCCGGCGAGCGTCGCCGGGCTGCTCGACGCGATTCGTG CTCTGGCCGGGGTGCTGGACGCTGGTGGCCGGCCCGACGATGCGTTGCTCGCCGTGGTGC GGGACGGCATGACGGCGCTGCTTTCCCGCGCCACCCCCGCGCCGGAGGCGCCTGCGCCGG CTGCCGACCGTGTCGCGGCCCTGTCACCGGCGGCACCGTCGTCCGGCACGTCACCCGATC TCCGGACGCCACGTGATGATCGCTCGGGGAGGGCCGGTCACGCTCTGGCGGCTGCCGTGC CGGTGCTTCCCGACGATCGTCACGTGGCGGCCGCGCAGGCGGTGCCGGTAGCGGGTCCGG ACGAGGCCGTGCCACGGCCGGCGGGTTCCCGTCGGCGGCGGGAGCGGCCGGTGGTGATTC GGACGGACCGTGGGGACAAGGCGCTGTCTCCTGAGCTGTCCGCGGCGGTCCGCGCCGTCG TCAACTCCGCGGAAGGGGACACGCCCGTGGTCCGCCGGGTGGACTCCGATGTCAGTGGCA CGCAGGACGTCCACGTGGGCGGTGTGCTTCTCGGGACGGTGCGTCCCGCTTACGGTCCTC ATGGCGGGAAGGCGTGGCAGGCCCGTGATGTGGCGGGCAGCGTGGCCCAGGTCTGGCGGA AGGGTCGGATGTGTGAGACCCATCCCCGCCGTGGTGAGGCGGTCGACGCTCTTGTCTACC ACCTTGCTTTCCTCGCTGAGCGGGCACGCCGCGCCTCCCTGCGTCCCCGGGCCGTTGCCT CGACCGACCCAGCTCCCACGATCGTCACGTGATGATCGATGGCCGCGTGGGTGGTGTCCC CTCCCGCGCTCGGGCGTGGTCAGGCCGCTGAGCGGCCCTCCGCCCGCATGGGTGGAGGGC CGCTGGCGTGTCCGGGCCGCCTGCGCCTCGTGCGGCCGGTCACGATGCGCAGGCGGTGGT TCCCGGGCTTCCCGGTCGGTCAGGGGCGGGGTGGGGTGTCCTGCTTCGGTTTGGCGCGGT TCTTGCGTCGTGCCTGCGCGGAGCGCAGTGCCAGTGCGGAGAAGTAGGAGCGTCGGGCGT TCTCGGCGCGGCGGGCGCGTTCGGCGGGTGGGAGGGTGCCGTCCGGGTCGACCTGGCGGT CGAAGCGGTCCAGGAACGTCGCGCGTCCGCGTGCGGTACGCGCGGCGCGGTCGGGGGTGG TCGCCCACGATGCGTGGGCGGCGATGCGGGCGATGAGAGACCTGTCCTCGGGGCGGGTAG CGGCCATGGCTGACTCCTGAACGATCCTGTGACGGTCCTGGGCGAGGCGGGATGGGCGGG GGCTAGTGAACGGTGGGCCCGGCCGCGGGGAGTTGTGGCGGCTCGCGGGACGGTCCGCGG ACTGCGGTGAGCAGGACCGCGGCCCGGTCGGTGGAGCAGCGGTGCCCGCGCTGGCGGACA CCGCGGGCGAGCGCGGTCCGGGTGACCGGTCGGCCCTGGCGGGTCAGCTCGGCGGCGACC GCGCGCCCGGCCGTGAGGAGATCGGCTGGCAGGGATGCCGGTGGCGGGCGGGTGTCGTCG AGGGGGGTGGTCCGGTCGGCGGGCGGGCCGTCGCCCGGCGGCCGGTCATCGCCCGGTGGT GGCGGGCTGCTGGTGGGGATCGTGCTCTTCGTGGGTGCCGGGTGCGCGGGCCGGGTGGCT TTGAGCCCGGCGACCAGGCCGAACGCGGCGACGGGCCAGAGGGCCATCGTGGGCACCCAG ACACCGGGAGCGCCGGTGAGCGCGTCGGGTCCGGCGGCGGTGAGGTTCGCCACGCCGGAC ATGCCGACCCCCGCTACGAGGGTGCTGATGGGCCAGCGGAGTGGGGTGCCGGTGCGGCGC CGGTGGCGGATTTCGATGATGGACGCCAGCGCCATCAGCTCGACGGACATGGCGATGAGC CAGGCGGCCCAGTCGGGTTGCCCGGCCCACGCTGCGACGTCGTGGACGTGGACGAACGCG ACGCAGAACACGCCCACCGCGAGCACCACCGGCAGCGCCGCACCGAGAAGGCGTTCCGCG CGCCCCTGCCGGGCGGGTACCGGGGCGGGTCCGGCCCGTGCCTGGCCGTGGTCGCGTCGG GCCGCGGTGGGGGCTGTGGGGACGGCCGTGGCCGGGTCCGGGGTGTCCTGCCTGGCGGGA GCGGGAGTCATGTCGGGGTTCTCCATTCCTGGGGCTATGCGGCGCGAGTGAGGGATTCGG GGAATGCGAGGCAGGAGAGAACGGCGGTGGCGAGAGCGGGAGGGACGGCGTTCCCGGCCT GAACGAACCGGCTGGTGAGAGTGCCCTGCCACGGATAGTCGGCGGGAAAGGACTGCAAGA CGCCGAACTCGGTTGGGGTGAAATGGTCCTCGGGGCCGACCCATCGGCCATTTTCCGTGG CAGCTCGGAAGGTTTTCCGGACGCTGGCACCGCCCCAGGCGTTTCCGCGGGTGGTCACGG TGAACGCCGGCCGGTCGACCAGACCCCGGCCGAGAGCGTCGGCCATGCTGCGCCAGGGCC TGAGCGGCGGGGCGAATCGTGCGGCGTTCGGGCGGTAGCGGGTGTGCGTGGGTTGCGGCG GGCCGACCGTGTCCCGGGTGCGGGAGGCGAGGAGGAAAGCACGGCGGCGGGTCTGTGGTA CGCCGTATTCCTCGGCGGACAGAAGCCCGGTCCAGGTGGCGTATCCGCTGCGGCGTAGTT CGTAGGCGAACCGTTCCCAGATCGGCAGCACGGCGGGAACCTCTTCCATCGCGATCCAGG CTGGCCGCAGTGCCCGGGCGAAACGCATGGGCTGGTGAATGAGCCGTCCGCGTGGGTCTG CGAGCCACATCCGGTTGCCGGCCACACTGAATGGCTGGCAGGGCGGGGACGCGATCAGCC CGGCTATCCCGGTGTAGTCGCCGGGCCGAAGTACCTCGACGTCGCTTTCGATGGTGGTCA GTTCGGCGGCGCGGCGGGTTTCGCAGGTCAACCGGTCCCACTCGACACCGATTTCACTGA GGCCGAGTTGTGCGCAGGCCAGAGACCATCCGCCGGGACCGGCGAAGAGGTCGAGCACGG TCGACATGTCTACCGTCTCCTGTTCGGAAAACAAGCACGGCTAATAAAGGAATGAGGTAA GGTGAATTGCGGCATGAGGAACCCGGGAGAAACATCACCGGATCTGCGGGATGGTGCGAC AGGAATGTGTTCGCGGGTCTCCCGGCCGCGTGGGCGACTCGCGGGATGGTCACGGTGCGT GGCTGTTGCTGGCGCGGTCCGCGGGGAGGGGTTAGCGGACCGGGAGGGGGCCGCAGACCC CCGATTCCAGGGGCTTCGCAGGGTCTGCGCCCCGCGCCGCTAACACGCATCTTCGCTGAT CAGATGGCCTATCGGACGCTAACGGGGGTGCTAACAGTTAGCGGGAGGGCCGCTAACCGT TAGCACCCCACACGGGGTCAGGAACCCCGCTGGCGGTCACGTTCGGCCACCACGGCGGCG ACGTGACGGCGTTCGATCCCGCGCCGGTTGACGACTTTCCCGCCGCTACGCCGGCCGATC TGCACGGTCTCGATCCCGTACGGTTTCACCACGACCGCGATCTGATCCGGCCCCCACTCG CCGTACAGGTCCGGCCGTAGCTCGGCGAGCCGGCGGGCGAGGGTCTCCGACCATATCCGC TTCTCCCCCTCCGGGATCACCGTGAGGATGTCGTCCAGGAGCGACGTCACCATCGGTGCG ATTTCCCCGACGGGTGGGGAGAGCCTGCCCGCGGCGATCCGCGCGGCCCGCGCCCGGTCC GCGATCTGCTCGGCGGTCGGGGTGTCGATGTAGGCGGCGCGGACAATCATCGGCTCATCG GTAGCGCCGACCAGATAGCCGATTCCCTTGTCCGACGGCCGTAGCGTGGTGGCCTGGATG CCGTTCTTGTACATCGACGTGCCGAGAATCATGTCGTTCTCCACCTGCCCCATCACCCGC AGGCAGAACCGGATGGACGCATTCGACGACACCCCGGTCGGCAGCGACGCCGCGTCCGGC CGCTGCGTGGCCAGGATAAGGATGATCCCGAGGGCGCGGCCGAGTTTGATGACGTCGACC GCGAGTTCCCCGGCCTCCTTCCCGTAGACGGGGTGGGAGAACAGGTTCTGGCATTCGTCG ACGATGGCCACCAGCGGGTGCAGCCCCTGGGAACGCAGCCCGGCGATCTGCCGGGTCACT TTCCCGTCCGGGCACAGATCCTTCGGCAACCGGCGGATAGCCTCGGCGCGGCGGGCTATA TCGGCCCGCAGGTCCCGCAGCGCTGCCAGTGTGGTTTCGGCGGTGGCGTCGTCGAGGCCG GTGGCGTAGCGGGTCGCGAACTTCTCCGCCGCGTCCAGGTCGGCGGTGCCTTTCAGGTTG AACACCCACAGCTCGCAGGTGGGATCCAGGCCGCAGCCGAGCATGAGCACCCGCACCGCC GACGTCTTCCCCGCCCCGGGAAGTGACCCGACCAGCACATTGTTTTCCACCAGCGAGATG GACACCGCCCGGCCGCGCGGGTCGGACCCGAACGGCAGCGGGGCGAACACGTCGGCCAGG CCCCGTTGCGCCAGCGGCCAGGGTGCGGCCGGGGCCTGGGACATGTCCTGGTCACCCACC CACAGGATGAGCCGGCCGGCGTGCGCGTCGTGCCCGGCTTCCGGCCACACACAGCCCAGC GGGCGGCGCAGCCCGGACGCGAGCCGTTCCCGGCGTTCCAGGATGTCCGAGACGGTCACC CCATAGGGGAGATCGATCTCGGCGCGCCAGCCGGGGCCGTCGCGCATGACCGGGGACGGG AAGGTGATCCCGCCGCCTTCGCGGCGCGCCCGGTTGATCTCCGCGATCCCCAGGGCGCCG AGTGCGCGGGTGACGACGTCGGCGGTCAGCCGGCCCACCCGGGTCGGCACCACAGCCGGG CTCATCAGCGGCCGGTCCGCCGGCGCCCCCACGACCCCCAGCGCCGCCACCGCGGCCGCG AGGAGGGGCAGATGCACGCCGGTCGGGACGGCGACCCACCACCACACCGCCAGCACCAGC GCGGGAAGGCCGACCAGACCGGCCAGGATCGCCCGGGTCCGGGTGCGGCTGTCATGCAGA CGGGCGAGCCGCAGATACGTGCTGGCGTCTTCCTGGCGGATCGCAGCGGTGATCACCGGC CGGGCGTCGCGGTCGGCCAGCCAGCCCACCGCTCCGGCGGCGAGCCGGCCCGCCCCCCGC GGCGCGCGGACGGCCAACCGGCCGGCGTAGAGCGGCACGCGCACGCCGTGGTAGGCGGCG GTGTAGGAGTAGTGCCCGGCCGCCCACCGGACCGCGACACGCAACGCAGCCCAGGACCGC AGCCACGACGGGACGATCGGCCGCCGGGTACCCGGCCGGGGCTCCAACAGCCTGCGGCGC GGTGCGGCAGGCGGGTCCACCGGCACCAGCACGTCGCCGGCGACCTCGACACCCTCGACG GGCACGGTCAACACCGGCGGTACGGGTGCGGGCAGGGGGACGGGGCGCCGGTCAGCGGGC AGGTAGGGGGCCAGCTCGGCGCGGACCGCGTCGAGGTCGGGCACCCACCCGCCCGGCGGG GGCGGCGGGGGCGGGTCGGTGGGTTCGTCGGGCGGCGGGGGGCTGTGGTCGGTCAT
Region Details
| Region | 1 |
| Region Length | 8.8Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 37135-46010 |
| # tRNA | 0 |
| # Total Proteins | 10 |
| # Phage Hit Proteins | 5 |
| # Hypothetical Proteins | 4 |
| Phage + Hypothetical Protein % | 90% |
| # Bacterial Proteins | 1 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Synech_S_CRM01_NC_015569(1) PHAGE_Strept_YDN12_NC_028974(1) PHAGE_Bacill_SP_15_NC_031245(1) PHAGE_Rhodoc_ReqiPine5_NC_023722(1) PHAGE_Mycoba_Eureka_NC_041850(1) PHAGE_Thermu_P2345_NC_009803(1) PHAGE_Entero_WPhi_NC_005056(1) PHAGE_Thermu_P7426_NC_009804(1) PHAGE_Natria_PhiCh1_NC_004084(1) PHAGE_Halovi_HGTV_1_NC_021328(1) PHAGE_Microb_Min1_NC_009603(1) PHAGE_Strept_TP1604_NC_028818(1) PHAGE_Mycoba_SirDuracell_NC_041987(1) PHAGE_Mycoba_Pumpkin_NC_042027(1) PHAGE_Mycoba_Mindy_NC_029093(1) PHAGE_Mycoba_Bask21_NC_041846(1) PHAGE_Mycoba_Seagreen_NC_028813(1) PHAGE_Oenoco_phiS11_NC_023571(1) PHAGE_Burkho_KL3_NC_015266(1) PHAGE_Burkho_AH2_NC_018283(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 10% |
| GC % | 70.62% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|SJXI01000056.1| Frankia sp. BMG5.11 contig_55, whole genome shotgun sequence. 197399, gc%: 68.64%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 10 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(37135..38466) | PHAGE_Entero_WPhi_NC_005056: Mth; E0504_31700; phage(gi33438939) | 5.90e-26 | Showinfo_outline |
| 2 | 38542..38958 | PHAGE_Burkho_AH2_NC_018283: Vsr endonuclease; E0504_31705; phage(gi399529071) | 3.30e-24 | Showinfo_outline |
| 3 | complement(38991..39221) | AlpA family phage regulatory protein; E0504_31710 | 0.0 | Showinfo_outline |
| 4 | 39473..39661 | hypothetical protein; E0504_31715 | 0.0 | Showinfo_outline |
| 5 | 39760..40005 | hypothetical protein; E0504_31720 | 0.0 | Showinfo_outline |
| 6 | 40233..41186 | hypothetical protein; E0504_31725 | 0.0 | Showinfo_outline |
| 7 | complement(41354..41641) | PHAGE_Mycoba_Pumpkin_NC_042027: hypothetical protein; E0504_31730; phage(gi100055) | 2.64e-08 | Showinfo_outline |
| 8 | complement(41697..42545) | hypothetical protein; E0504_31735 | 0.0 | Showinfo_outline |
| 9 | complement(42569..43441) | PHAGE_Rhodoc_ReqiPine5_NC_023722: gp74; E0504_31740; phage(gi593778415) | 4.72e-51 | Showinfo_outline |
| 10 | complement(43812..46010) | PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; E0504_31745; phage(gi100161) | 4.85e-05 | Showinfo_outline |
Sequence
>complement(37135..38466)
FrankiaspBMG511MESTEGAAPARAAQPDVLAGTSHGAAANRSFSAIDLFAGAGGASAGLVAAGADLRLAAEIDLEYASTHQANLPADVLVGDLRDIDSEKIARAAGIAPGELSLLFAGPPCQGFSVMGSRVVWDERNNLFREVLRTAKDLRPKCVVIENVPGLVTLGNGAYLQSILQGLSETGYAGACAELLAAQYGAPQMRWRLVIIAWRKDLDIPAGYGFPTPTHGGEIGDLLPNCTITASQSAGFLTTYDAIGDLPSVEAGKQNDRYVGPATTAYQREMRAGLTDELWNHYAAKLSDSNLVRIAHLKPGQDWRDLPFELLPAGMQRALRKDHTRRYRRMSWNGVPRTIVTRFRDPKTGEYTHPEQDRTISIREAARIQGFPDSFVFHGNRSSQYDQVGNAVPVQLAKTIAEEIHRCLDGRPTHRLDSPFRRRPVAFLGPHGDLLPTLADSAA
Sequence
>38542..38958
FrankiaspBMG511MPERWVSTPAAAGLRGRRNSDTEPELLLRRALHAAGARFRLHRALDAGCNPDLVLPGRKIAVWVDGDFWHGCPVHGRSAFSGPNAPLWAMKMQRNRERDARASELARQAGWTVVRLWECEIRASPTDAARRVLGAGDA
Sequence
>complement(38991..39221)
FrankiaspBMG511MASSDEPETRPATPADLVGFAELRALLGVARSRAHTISRDRDFPAPWYTGEKERLWLRVDIEAWMDQHRPGWREEA
Sequence
>39473..39661
FrankiaspBMG511VHVRETGTGPYRCVVVDVPAGVHPASLATALRSLPIACEFVGMEDLAGTRGGGELRFRVHDQH
Sequence
>39760..40005
FrankiaspBMG511MSARMVLPVTGAHRALVARRRVAAAVERRPLIYGLAVFDDAGALVEVVSPFGSETAARQWADLYGVEAYQVLPARIAGGRH
Sequence
>40233..41186
FrankiaspBMG511MNGPASTQGVCGCGCGRTCPAAPAGGGRVPRYASHGCQQRAYRARQAARTVPPADPASVAGLLDAIRALAGVLDAGGRPDDALLAVVRDGMTALLSRATPAPEAPAPAADRVAALSPAAPSSGTSPDLRTPRDDRSGRAGHALAAAVPVLPDDRHVAAAQAVPVAGPDEAVPRPAGSRRRRERPVVIRTDRGDKALSPELSAAVRAVVNSAEGDTPVVRRVDSDVSGTQDVHVGGVLLGTVRPAYGPHGGKAWQARDVAGSVAQVWRKGRMCETHPRRGEAVDALVYHLAFLAERARRASLRPRAVASTDPAPTIVT
Sequence
>complement(41354..41641)
FrankiaspBMG511MAATRPEDRSLIARIAAHASWATTPDRAARTARGRATFLDRFDRQVDPDGTLPPAERARRAENARRSYFSALALRSAQARRKNRAKPKQDTPPRP
Sequence
>complement(41697..42545)
FrankiaspBMG511MTPAPARQDTPDPATAVPTAPTAARRDHGQARAGPAPVPARQGRAERLLGAALPVVLAVGVFCVAFVHVHDVAAWAGQPDWAAWLIAMSVELMALASIIEIRHRRRTGTPLRWPISTLVAGVGMSGVANLTAAGPDALTGAPGVWVPTMALWPVAAFGLVAGLKATRPAHPAPTKSTIPTSSPPPPGDDRPPGDGPPADRTTPLDDTRPPPASLPADLLTAGRAVAAELTRQGRPVTRTALARGVRQRGHRCSTDRAAVLLTAVRGPSREPPQLPAAGPTVH
Sequence
>complement(42569..43441)
FrankiaspBMG511MSTVLDLFAGPGGWSLACAQLGLSEIGVEWDRLTCETRRAAELTTIESDVEVLRPGDYTGIAGLIASPPCQPFSVAGNRMWLADPRGRLIHQPMRFARALRPAWIAMEEVPAVLPIWERFAYELRRSGYATWTGLLSAEEYGVPQTRRRAFLLASRTRDTVGPPQPTHTRYRPNAARFAPPLRPWRSMADALGRGLVDRPAFTVTTRGNAWGGASVRKTFRAATENGRWVGPEDHFTPTEFGVLQSFPADYPWQGTLTSRFVQAGNAVPPALATAVLSCLAFPESLTRAA
Sequence
>complement(43812..46010)
FrankiaspBMG511MTDHSPPPPDEPTDPPPPPPPGGWVPDLDAVRAELAPYLPADRRPVPLPAPVPPVLTVPVEGVEVAGDVLVPVDPPAAPRRRLLEPRPGTRRPIVPSWLRSWAALRVAVRWAAGHYSYTAAYHGVRVPLYAGRLAVRAPRGAGRLAAGAVGWLADRDARPVITAAIRQEDASTYLRLARLHDSRTRTRAILAGLVGLPALVLAVWWWVAVPTGVHLPLLAAAVAALGVVGAPADRPLMSPAVVPTRVGRLTADVVTRALGALGIAEINRARREGGGITFPSPVMRDGPGWRAEIDLPYGVTVSDILERRERLASGLRRPLGCVWPEAGHDAHAGRLILWVGDQDMSQAPAAPWPLAQRGLADVFAPLPFGSDPRGRAVSISLVENNVLVGSLPGAGKTSAVRVLMLGCGLDPTCELWVFNLKGTADLDAAEKFATRYATGLDDATAETTLAALRDLRADIARRAEAIRRLPKDLCPDGKVTRQIAGLRSQGLHPLVAIVDECQNLFSHPVYGKEAGELAVDVIKLGRALGIILILATQRPDAASLPTGVSSNASIRFCLRVMGQVENDMILGTSMYKNGIQATTLRPSDKGIGYLVGATDEPMIVRAAYIDTPTAEQIADRARAARIAAGRLSPPVGEIAPMVTSLLDDILTVIPEGEKRIWSETLARRLAELRPDLYGEWGPDQIAVVVKPYGIETVQIGRRSGGKVVNRRGIERRHVAAVVAERDRQRGS
Frankia sp. BMG5.11 contig_55, whole genome shotgun sequence
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 197399 bps
Phages: 1
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Click on a sequence to see details.
Locus 1: E0504_31700 (Region 1)
Locus: E0504_31700ORF Start: 37135
ORF Stop: 38466
Strand: Backward
Protein Sequence: MESTEGAAPARAAQPDVLAGTSHGAAANRSFSAIDLFAGAGGASAGLVAAGADLRLAAEIDLEYASTHQANLPADVLVGDLRDIDSEKIARAAGIAPGELSLLFAGPPCQGFSVMGSRVVWDERNNLFREVLRTAKDLRPKCVVIENVPGLVTLGNGAYLQSILQGLSETGYAGACAELLAAQYGAPQMRWRLVIIAWRKDLDIPAGYGFPTPTHGGEIGDLLPNCTITASQSAGFLTTYDAIGDLPSVEAGKQNDRYVGPATTAYQREMRAGLTDELWNHYAAKLSDSNLVRIAHLKPGQDWRDLPFELLPAGMQRALRKDHTRRYRRMSWNGVPRTIVTRFRDPKTGEYTHPEQDRTISIREAARIQGFPDSFVFHGNRSSQYDQVGNAVPVQLAKTIAEEIHRCLDGRPTHRLDSPFRRRPVAFLGPHGDLLPTLADSAA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: E0504_31700, Mth, phage(gi33438939), PHAGE_Entero_WPhi_NC_005056
Homolog/Ortholog E-Value: 5.90e-26
Locus 2: E0504_31705 (Region 1)
Locus: E0504_31705ORF Start: 38542
ORF Stop: 38958
Strand: Forward
Protein Sequence: MPERWVSTPAAAGLRGRRNSDTEPELLLRRALHAAGARFRLHRALDAGCNPDLVLPGRKIAVWVDGDFWHGCPVHGRSAFSGPNAPLWAMKMQRNRERDARASELARQAGWTVVRLWECEIRASPTDAARRVLGAGDA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: E0504_31705, Vsr endonuclease, phage(gi399529071), PHAGE_Burkho_AH2_NC_018283
Homolog/Ortholog E-Value: 3.30e-24
Locus 3: E0504_31710 (Region 1)
Locus: E0504_31710ORF Start: 38991
ORF Stop: 39221
Strand: Backward
Protein Sequence: MASSDEPETRPATPADLVGFAELRALLGVARSRAHTISRDRDFPAPWYTGEKERLWLRVDIEAWMDQHRPGWREEA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: E0504_31710, AlpA family phage regulatory protein, phage regulatory protein
Homolog/Ortholog E-Value: N/A
Locus 4: E0504_31715 (Region 1)
Locus: E0504_31715ORF Start: 39473
ORF Stop: 39661
Strand: Forward
Protein Sequence: VHVRETGTGPYRCVVVDVPAGVHPASLATALRSLPIACEFVGMEDLAGTRGGGELRFRVHDQH
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: E0504_31715, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: E0504_31720 (Region 1)
Locus: E0504_31720ORF Start: 39760
ORF Stop: 40005
Strand: Forward
Protein Sequence: MSARMVLPVTGAHRALVARRRVAAAVERRPLIYGLAVFDDAGALVEVVSPFGSETAARQWADLYGVEAYQVLPARIAGGRH
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: E0504_31720, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 6: E0504_31725 (Region 1)
Locus: E0504_31725ORF Start: 40233
ORF Stop: 41186
Strand: Forward
Protein Sequence: MNGPASTQGVCGCGCGRTCPAAPAGGGRVPRYASHGCQQRAYRARQAARTVPPADPASVAGLLDAIRALAGVLDAGGRPDDALLAVVRDGMTALLSRATPAPEAPAPAADRVAALSPAAPSSGTSPDLRTPRDDRSGRAGHALAAAVPVLPDDRHVAAAQAVPVAGPDEAVPRPAGSRRRRERPVVIRTDRGDKALSPELSAAVRAVVNSAEGDTPVVRRVDSDVSGTQDVHVGGVLLGTVRPAYGPHGGKAWQARDVAGSVAQVWRKGRMCETHPRRGEAVDALVYHLAFLAERARRASLRPRAVASTDPAPTIVT
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: E0504_31725, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 7: E0504_31730 (Region 1)
Locus: E0504_31730ORF Start: 41354
ORF Stop: 41641
Strand: Backward
Protein Sequence: MAATRPEDRSLIARIAAHASWATTPDRAARTARGRATFLDRFDRQVDPDGTLPPAERARRAENARRSYFSALALRSAQARRKNRAKPKQDTPPRP
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: E0504_31730, hypothetical protein, phage(gi100055), PHAGE_Mycoba_Pumpkin_NC_042027
Homolog/Ortholog E-Value: 2.64e-08
Locus 8: E0504_31735 (Region 1)
Locus: E0504_31735ORF Start: 41697
ORF Stop: 42545
Strand: Backward
Protein Sequence: MTPAPARQDTPDPATAVPTAPTAARRDHGQARAGPAPVPARQGRAERLLGAALPVVLAVGVFCVAFVHVHDVAAWAGQPDWAAWLIAMSVELMALASIIEIRHRRRTGTPLRWPISTLVAGVGMSGVANLTAAGPDALTGAPGVWVPTMALWPVAAFGLVAGLKATRPAHPAPTKSTIPTSSPPPPGDDRPPGDGPPADRTTPLDDTRPPPASLPADLLTAGRAVAAELTRQGRPVTRTALARGVRQRGHRCSTDRAAVLLTAVRGPSREPPQLPAAGPTVH
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: E0504_31735, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 9: E0504_31740 (Region 1)
Locus: E0504_31740ORF Start: 42569
ORF Stop: 43441
Strand: Backward
Protein Sequence: MSTVLDLFAGPGGWSLACAQLGLSEIGVEWDRLTCETRRAAELTTIESDVEVLRPGDYTGIAGLIASPPCQPFSVAGNRMWLADPRGRLIHQPMRFARALRPAWIAMEEVPAVLPIWERFAYELRRSGYATWTGLLSAEEYGVPQTRRRAFLLASRTRDTVGPPQPTHTRYRPNAARFAPPLRPWRSMADALGRGLVDRPAFTVTTRGNAWGGASVRKTFRAATENGRWVGPEDHFTPTEFGVLQSFPADYPWQGTLTSRFVQAGNAVPPALATAVLSCLAFPESLTRAA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: E0504_31740, gp74, phage(gi593778415), PHAGE_Rhodoc_ReqiPine5_NC_023722
Homolog/Ortholog E-Value: 4.72e-51
Locus 10: E0504_31745 (Region 1)
Locus: E0504_31745ORF Start: 43812
ORF Stop: 46010
Strand: Backward
Protein Sequence: MTDHSPPPPDEPTDPPPPPPPGGWVPDLDAVRAELAPYLPADRRPVPLPAPVPPVLTVPVEGVEVAGDVLVPVDPPAAPRRRLLEPRPGTRRPIVPSWLRSWAALRVAVRWAAGHYSYTAAYHGVRVPLYAGRLAVRAPRGAGRLAAGAVGWLADRDARPVITAAIRQEDASTYLRLARLHDSRTRTRAILAGLVGLPALVLAVWWWVAVPTGVHLPLLAAAVAALGVVGAPADRPLMSPAVVPTRVGRLTADVVTRALGALGIAEINRARREGGGITFPSPVMRDGPGWRAEIDLPYGVTVSDILERRERLASGLRRPLGCVWPEAGHDAHAGRLILWVGDQDMSQAPAAPWPLAQRGLADVFAPLPFGSDPRGRAVSISLVENNVLVGSLPGAGKTSAVRVLMLGCGLDPTCELWVFNLKGTADLDAAEKFATRYATGLDDATAETTLAALRDLRADIARRAEAIRRLPKDLCPDGKVTRQIAGLRSQGLHPLVAIVDECQNLFSHPVYGKEAGELAVDVIKLGRALGIILILATQRPDAASLPTGVSSNASIRFCLRVMGQVENDMILGTSMYKNGIQATTLRPSDKGIGYLVGATDEPMIVRAAYIDTPTAEQIADRARAARIAAGRLSPPVGEIAPMVTSLLDDILTVIPEGEKRIWSETLARRLAELRPDLYGEWGPDQIAVVVKPYGIETVQIGRRSGGKVVNRRGIERRHVAAVVAERDRQRGS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: E0504_31745, hypothetical protein, phage(gi100161), PHAGE_Bacill_SP_15_NC_031245
Homolog/Ortholog E-Value: 4.85e-05
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download