Submission Results
Sequence Name: Not Available
GenBank Accession Number: SRUM01000003.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: SRUM01000003.1.PHASTER.zip
gi|00000000|ref|SRUM01000003.1| Mesorhizobium sp. M3A.F.Ca.ET.201.01.1.1 584299, gc%: 63.81%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 9.8Kb | incomplete | 10 | 9 | 206710-216606 info_outline | PHAGE_Vibrio_Ceto_NC_042094(1) | 54.01% | Show info_outline |
Region DNA
>1 206710-216606 ATGTCGACCGACATCCAGCTAAAAGGCGACAGTTTGCGAAGGCAAACTGAGAGGTCGAAG CAATATGCAGACGAGCACGGTCTCGAGCTAGTAGAAGACTTCAAGCTAGAGGATATCGGC GTCTCTGCATTCAAGGGGGACAACCTATCTTCGGGCAACCTGGGCAGATTTTTGGATGCG GTGAAGGCAGGTAGGATTCCGGAAGGCTCGTACCTACTGGTGGAGTCGTTTGACCGCCTT TCCCGCCAAAAACTGAATGCCTCGGTCTCTCTGTTCTTCGATATCACGTCCAACGGGATC AACCTCGTCACCCTCTCCGACAACCAACTCTATAAGGCAGGAGAGGCAGAATTTGCGCAG CTGATCATGTCGATCGTCGTGATGGCGCGTGCAAATGAAGAATCGGAGATGAAAAGCCAG CGACTTTCCGCTGCCTGGGACGCCAAACGACGGGCTGTAGGGGAAAAGAAGCTTACTGGT CTTTGCCCTGCGTGGCTGCAGCTGTCAGAGGACCGCAAAAATTTTCACGTCATCGACGAT CGGGCTCAAGTCGTCAGAAGAATATTCGAGGATAGCGCTAGCGGCCAAGGATCATTCGTC ATCACGCGACGGCTGAATGATTCTGGGGTACCGGCATTCGGGCGATCAACCGGATGGGTA CAGTCATACGTCACCAAGATTATCCAGGCCCGGGCGGTCCTTGGCGAGTTCCAGCCACAT ACTAAGCAGAACGGAAAGCGGGTTCCGCTCGGGGATCCGATTCCAGACTATTACCCACAA ATCGTTGACGAGAACTTGTTTCTTCGAGCACAATTTGCCCGAGGAAAGCGCAGGATCGAA GGTGGAGGACGCAAGGGAGAGGCGTTGCGCAACCTGTTCACCCACCTAGCGACATGCGGG TACTGCGGCTCTCCCATGCATTTCCTAAACAAGGGCATCGGCCCAGGAGGTGGGACCTAT CTGAAATGCAGTCATGCCCTGCGCGGATTGGATTGTGTTCCGACGGCTTGGCGTTACCAA GATTTCGAAAGGTCGTTCTTCCTGTTTGTCAACGAGATTGATCTGGCTGAGATGCTCAGG GCCTCGTCGCAAAAATCCGAAGTGCTGATCTTGGACGAACGTGCAGTCGCGTTGGCCGAG AAAAAGAGCGAATTAGAACTGAAGCGAGAACGGACATATGCGCTGATCGACGACGGCGCG ATTTCAGTCGATTTCCTGACAACCAAATTGCGGGAATGCGAAGCCGAGTTGGTTTCAATC GAGCAGCAGATAGTCGACGTTGATCGTCAGCGGCAGGAAATTCGCGAGCAGCAGTCGATT TCACCGGATGAGCTGCGGCTCTTGATCGACCAACTTCAACAGATGAAAGGTCCTGAGGCG TTTTCACAGCGTTCCATGTTGGCAACAAGGCTCCGCGAAATCGTCACCGAACTCAAATTA GAGGTCGAGGGCTCACGACCTCGGCAAGGCAAAGCCGCTGCCCTACTGGATGCTGCGGAC ATTGATCCCCAAGAGCGCAGCCAGATCTTGGATCTTATCGAACGATCCGATCGAGAGGCA CAGCGGCACAACAGAAGCTTTAGCGTGGTTCTGGCAGATGGCGTGTCTCGGCGGGTCGTC CTGAAAAACGATGACCCGGCAAGTTTCGTCGCAGAGGTTCTCGTCGGCAAAGACGGCGCA ATCTCAGGCAGTGATCGCGGGATGCCCATTGGCTGGTCTGACGGGTGGGACAAGGTATTC GACGAGCCTGCTACGGCTCAGTGACCGGAGATTTCTCACCCAAGTCGAGAGTTTCGCGAT CTCCTCGCCATAAATAGCCGGCCCGGTTGCCCAGCTAACCTTTCTCAGAACCTCCAGAAC CGCCTTTCCCCTCTTTTTTCAACTTTCACATTCGACATCGGTTTTCGTCCCGTGCCGACG GCTTATCCTCGCACGACTTCGAACACCTAAATTCATTTCCGCCTGCCGGATTCCGATGGG TCTATATCCCTATGAAAAGCCAATCACATGCATCAAGACGTCTCAAAACCATCTCCGACG ACCATCACACAGCAATATGCATCGTGGTTCGATGAGAGGATCGATCAGTTCATCGAGGAA CATAAAGGGAGGTTCGATTCCGTCTCAACGTTCAAGAAACGGAACGGGTACTTGATCACG ATCTCATTCGATCACAGCCGTCGCAATCAGCGGCATGAAGGTGCCGCCTCAATCGACCTC CCCAAGGGGAAATCACAGCTGGATACGTTTACCGACCTCTACAATTACCTGTGCCGGGAA CTGATCGGACGGAACTACCACCGACCATGGTTCGATCCGCTGAAACCGCTGGCAATCGGT TGTCTGGATATGAATGGATCGAGATATTGGAGGTCGATGGGAGCGCTAGAGAACCCTCAT ATCCATTCGATCTGGATTTTCAATGATCAGGTTCGAGAGGGCTTTCAAAAATTAGTCGCC GACAGACAACGGTTTTCAGCCCTCAAGGAACGGTTTTATTTGAGGGAGATGGATATCCAG ACTCTCGATCATGACCATCGAAATTCGACGGGTGAGGGTCGTGCAACTTCGTACATGGCG AAATTCATAGGGCACAACAATTCAGAGCTTTTGGTCGGAGACGATTTCAGGGTGCTGCCG ATTTCAAAGCCAACCGCGCCCCATTGAACGGCCAATCCATCACAGCCGCTAGTCGGCTTC CTCCTCCTGATCGTCATCGTCAAAATCATCGTCTTCATCGACATCTTGCTGCTGACCGTG AACGTCGACGAACTCCATCCAGCTCCAGTTCTTGGCTCTGACCTCGGCGTTGAAGCGGTC TTTCATCGGGGTTGGAGTCCGATATGTGCGCTTCAATAGGTCAACGAGATCGGAAATCTT CGCGTTCTCTACGGCAAATGCAAAATCGAAGCGTTGGCGCTGGATGCCCCGCATATTCGA GGCAGTTACCTCAACATCAATAACGAAAGGACCCTCACAATGGGGATCGATCGTCGCTAT CCCTTCGAATTCCCATGAGCGACCATGCCTGAAATCAGCGCAATGGATCTCAATAATTTT GGCTCGATCGGGGCCGACTGCAAAATGCATGTCGTGCCTACCGACCGGTGAACGGATGGA ATTCGGATTGAACCGAATGCCACCGAGAATTCCCGATTTAGGTCTCGGCGCAGACGGGCC AAAAATCGGATAGCAGGTGAAGCGATCGTGCAGCGAGCCGCCTGAACTGGTCAGTTTGAG GACTAAGCTCTCCGCCTGCAGATCCCCAACGTTCTTCAGGCTGAAGGTGAAGGGTATTTG ACCATATTCAACTTCAAGGAATCGATGAACGGAGGCGGCATACGCCGGAACGACCTTGGT TCGATATTCGCGATAGCAGTCGCCATAGCTGTAGTCACGCAGGACATTGAATGGTGAGTC GTCATCCTGACTGGGGTTCTGTCGGATAACGAAAGAGGTGATTGCCTTCCTGGCTTCAGT AGGGATCGGTTCGACACGGAAAACAGTCTGAGGCTGCTCGGCCCCATATTGCAGCGAGAT TTCGACGTTGGGCTGCGCTTGTTCCAACTCGCGAACACGAGCTTTTAACCGGACGATCTC CTTGTCACTCGGGCTCGGCTCAGGGTCAGCCAACCAATGATCCGGCATCCGCCAGGATTT CAGCCCATGACGTGATGCGATCGCGATCGGGTTTGTGTCATTGGTCAGCAGCAGCTTACG CTGATCGGGAACGTCCCGTGCATTCAGGATTTGAGCAACGACACGATCGTCGCCGCCGTC GGGATCGAGGTCGTCGTATTGATCCCAATCGATCCGCCTATGTCTGGCAATAGCAATGTC AATCGCTGGAGGCCCCTCAGAAACCCTATGCGGAGCAGCGGTTTCGGCCGCAGGAGAAAT CAACCGATTAAAAGCTCTGGCTCGCTTAGCAAGTCGTCCATCGCGCTTCCGCTTGTCGAT CTCGGAATTAACCTGCGAGACGACCAAAATAAGGATAGGGCCAGTCGGATCAAGCTCATC CCACGGCAACTTGTCCAGTGGTTTGCCCTCGAGAGCAACCATGCTGTCGATGAAGACGAC CGTGGAATACTTCGTGTGGTCAAACTGCGATTCCATTGAGAAGCAGGATAGCCCTCACAT AGGCCCACACCAATGCCGGCCCGCTGTGCGTTTGATGATTTTCCCTCAACAGGGGACTTG CAACATGAAAACGTCAATCCCACCTGAAGCGGCACGGCGACGGGAATGGCTCCGGCGACG TTCAATTGGAGGGATCGGCAAATGGCGGGATACAGCCACACAAATCTGAATCAGTCCCGT GTTCTCGCCGCCCTCGCCCGCGTAACCACGCACTTCTCGATTCAATCAATGTCAGTCGAC GCTGCTCGTTCGGCAGCTCGGCAAATACGATTGAATTGGGATGATTATGGAAAATCTGAA CTCCGCCGCATCAGATGATGCCGACAGTCCGCCTGTCGTCAGCTCACCCACAGATCCTCA TGAACGCGCATCCTGGCTGACTCGCAAGCTGCGCTTGTCGATCAACCGACGGTTGATCGA CAAAAACTCGTTGGGAGACGAGGGCGCGTTCGTAAATGGATTCGTGCCGCATCAGCTTGA TGTGAAAGCGCTGCTTGGAAACATCATGCAGGGCTACTCTTATTGCGCGGAGCTAAAAGG TCCGCGCAGCAACAGCAACTTCAAGGCATCTGATCTGCTGTCGGTCGATATCGATGGGAC TATGACGCTCGATGAAGCAGTCAATGACCAGTTCGTCGCAGCCCATGGGACCTTCATCTA TACGACCGCCAGCCACACCGACGACAAGCACCATTTCCGGATCGGCTTCGCCCTGGAAAG AACGATCGAAGACGCAGCAGAAATGCGCGCGGCCACTCGCTCCTTGATCTTGAAATTTGG GGGTGACGCGGCGGCATCTGACCCTTCAAGAATCTTCTTCGGCAACAGGAAAACCGAGTG CGTCTACTTCAATCGGGGTATTCCGTCCCCGATCCTGGACGAGCTTATCGCTCAAGGTCG CGACGCCGATCAACCTGACACCGATTTCGGTCGACGCGCGTCCACACGATCTAGGATCAC GATTTCACCTGGAAAAGTCGTCATCAGTGCCAAGCGCGGTTCTGGGTTTCTGGACGATTT CGACCGCTCAGAGCAGCTTTTTTGCCCCTTTCACAAGGACACTCGTCCAAGCGCATTTGT CATTCAAAATCGATACGGACAAAAGGGAATTCGCTGTTCCGCCTGCGTCCAGAGCTTCTG GGCAACGGGCTACAACGATCATTACGACTTCCAGAGTTTCGAGAAGGCGGCGCATGCGAT TTTGACGATCCCCAAGGCGACGTCCGATATCGACAAATTCTTCCCATCAGAAGACGACGC CGTGCATATGGCAGCGGCTACGATCGATTTTACCGATCAGGAGCACCTCAAGCATTGGCA GTTTGTCCAAGGAGCGACCTTCATTCGTAGCCCTAAAGGCAGCGGCAAAACCGAATTGCT CAAAAACCTTGTTCAAGAGGAACGTGGACGGTTCCTGCTGATTGGTCATCGGCGCACATT GATCCGCTCAATGTGCAACAGGCTCGGGCTCGATTGCTATCTGGACGATGAAAAAGGTCC GCGTAGCCGGCGGCACGACCGATACGGTATCTGTCTCGATAGCCTGATGAAAATCAAAAC GGACAAGCCGTACGACTACATCCTGATCGACGAGTCGGAGCAGGTTCTAGCGCATTTCCT GTCTTCGACGATGGCCGAAAAACGCTTGCCGGTCCTGCATCGCCTGAGGCACCTGGTTTC CAGCGCTAAAAAGGTGATCGCTCTGGACGCCGACCTTTCGTGGAACACATTCCGACGAAT CTCAGAGTGGCGTAACAAGCCAGATCAGGCAGGGAGCAACCGCCTTATCATAAACACGTT TCGGAAGGACCGCGGTACGATCCATTTGGTCCCGACGAAAACGCAGCTTATCGGCGAGAT TCACAGAGCGATTGCCGACGGGAAGAGGTGTTTCATCACCGCGAACAACAGGGGGTTCAT CGAGAAACTCGAAAAGTCCCTGCTCGATAAGGATTCGACGGCCAGGCTGATCACCATCAC GTCGAAAACGGTACAAAGAACGGACGAGAGAATTGCATCCTTTCTAGCCGATCCCAAATC GGAATCCTCAAAGTATCAGGTGATTTTGGCCTCACCGTCCCTTGGAACCGGTGTCGATTT CAGTTTCGACAACGAGGAAGACCGCTTTGACATTGTTTTTGGCATGTTTGATCCGCTGCT CCTTACCCATTTCGGCTGCGATCAACAGCTCGCTCGCGTCCGGTCGCCAAAAGAGGTTCG TGTGTTTGTCAATCCTGCGCGGTTCACCTTCGAGACCGACCTCGACACTGTAACTGCCGA TGCGTTGTCATTCGAGATGATGGGGCACTTGATCAAGGGATACGATCCAGCTGGGAGGGA AGAGTATCTAGACCAACGGGACAATGATCCCTTGTTGCGGATTGCAGCTTCGGTTCTATC GGTCGAGCGAGCATCTAAGAATGATCTGAAGGCACACTTCATCGAGTACGTTCAGAGGCA GGGTTGGGAGGTCGTTCACGTACAGAGGGATGAATCTGTATACGAGGTCGGCAGCTTGGC TTGGGTGACGGGTAGCGCATTGCACAAGGAGCACGCTGTGCGGCGCCTTGTCGAAGCCAA GTCGTTGTCCGACGACGAATTCGAGAAGGTACCCGATCAACACAGGGTGAAAAGACATAC TTTTACAAAATTGACCCTGCATCGTTCGCCAAGATGGAGGGGATCGCCAACCAGAGAAGG GTCGGGCAAAACGGGTCATGAAAAAAAGGGGAACATGATGTTTATAACTGTGGAACGAGG ATAAGCAAAAGGAATTATATGTGTTTCTGGTCCAATCCCATCCTGACCGTCGAAAATATC CCGGATAACATCCCAATTTATATAGAAACACATATAATTCCTTTCACTTATCCTCTTTTA CATTCTGGGTCGTCGATGACGACCCAGATAGGCGGATAACACGTGAATTTTATATAAAAA CATATGCAAATCCTTTCACTTATCCTCTTCTTACGTTCCGAGGTTTCGGGGGACTAAGGG TGACCAGTCCAATCGACGACCCGACATATCGACGGATTGCCGTGATCCTACTGTGCAGGG GTGAGTTTCCGGCGACGATCACGGTGCTCAAAGGCCCCCCGACAGATCACTTCGAATGCC GATATTTCGTTCCGTGGCTTGCGCCGCAGCCGTTGACCTCAGTTCCAAGCCTGTGGACGC CGTTGGTCGTGATGACAACAACGGAGAGCTCACATGGCATTCGAAGGATTCAAACTGGTA GCGGCGCCGAAGCGCGAAGCATCCGACCCTGCATCGAAGCGTAAGCAGCGTCTGCTGATG CAGATTGATCACCAGCTCTATATGGCGGAGCCGGACAACCGTCTGCGGAAGTTTCGTGGT CGTTGGTGGACGACTGACGCTGAAGGCAAGCTGATGCTGTCGATCAAGTACGGAAAGGTC CCGCTCGAACTCGCCAAGGGCAAGCATGCAATTGCATGCAACGACATGGACGACTTGGTC GAAGCGCTGAAGAAGGCAAAGGCAATTGCCGTCGACGGCACGTTCGATGCGCAGCTGGCG ACGATTTCCGGTCAGGTCAGGGCGCGGTTCAAGAAGGGCGATTGACCGTGAACATCAACG CCCTATCCCGCTGAAAACTGTGGGATAGGGCACAAACTGTCTATTCAGATCGCCGTCTCG CCAACGCTCGTAACTGCTCGACCGCTACGACTAGATCGCTATCGGTCAAATCTCCCAGCA ACAGCCTCGCCTCGATCTCCCGCTTCAGACGGCCGTCTGAACGTTTGACTGGCGTCTGAT CAAAGAAGGTTTCCACGGGCACATCGAGAGCTTCGCTTAGTCGGATCAATGTCTCGAAGC TTGGCCAGTTGACGCCCCGCTCCCACTGCGAAACTGCGTCGAGGGATCTTCCCGTGCGGG CCGCAAGGTCATCCTGCGTCAAGCCTCGGAGCTTCCGAAGCTCTTTCAGAATCATGCCGA ATTTGTCGATCGCGGACATGCCGCAGGTGTGCGCTGCCCGTCAAATTCCTTGAACCTAGC TCGCTACGCGCATTGTCAAAATATTCGTAGATAACTACCGGTTTTTGTTGATCGCGAACT CAACCACGGGTATCGCTATCGCGACGTAAGGGCTCACCTGAAAGACGGTGATGGGGGTAT CCATGGAAGAAGCTGCAGCGCCAGCCGCTACGATCGATTGCCCGTATTGCGCGGAGCCGA TCAATCCGAAGTCAAAAAAGTGCAAGCATTGCGGGGAAATCCTCGATCCGCAGATGCGAG AGATCGAGCTGCTGAAGAGCCAACGCAATAGCCCCCAGGTGTTCATGAACGCCGGCGGCG GAGCTGCGGCAGCCGCGGCTGCGACCGGCGCTGGCGGACCGGTCAAGCGGTTCCCTCACT GGTTTCACATCATTTTGGTGATTCTGTCCGGCGGGCTTTGGATACCGATCTACCTGTTGA TGTACCTGTTCCGAAACAAGCGATACTACTACTGAAAGGTGCGGCCATGGGTGCTTCGTC TCGATTTTGCCTCGCCAGCCGCGCCTCTCGGACCGTTCTGGCTGCAATCATCGTTGCCCT GCCTAGAGTGGCTTTTGCGGACAGCAATTTCAGAGGGTTCTCGATCAGTGACACCTTCGA GCAGGTGCAACAGAAGGCAAAAGCCGACGGCTACGAGATCAAGGTGTTGCCCCCGGTCGT CGCAACCGATGATGACCAGAACCATCTGTTTCTGAAGCTCAAAGGTGAGACCTGTGCATC GATGGTCTTCGGCATTAAGCAGTCAATCACGCAGATGGACCTGTATCCGTGCTTCTATAA CGGTAAGGAGCTGGCGTTGCAGCAGGTGGTTTCCGAATTCGTTGACCGCTTTGGTGGCCA GCCAGAGGCGGACGTGTATCAAGGTTCGAACTGCACAAATGCCGAGCCTTTGATCTATCG CGGCAACACCAAGGAAGGCGAGCTGTACGAAATTTTCCAGGACTGCGTCGTTGCTATCAG GATCAAGCCAGGGTCCAAAGTTCAGTTCTAGACCCTAGCCGAGGAAAACCACACTGAAGG GATCCGGTTTTCATGCGCGCTCTTTCAGGTAGGTTCTTAACCCGATTTCCGATGAAGACG GTGCTTTCGACGCTATCCCTCGTCGTTGGCACAACCACTGCCAATGCCACCGATGCGCTG CCAATTGCCGACGGTGCCTACATGAGGTCGGCCGACTACTGCGAACAGTTTCGCCAAGGC AAACTGGATTTCATCGAGTTTTCGGTTTCCAAGGGTGGCCACTATTACGAATTTCCCGAG TCGGGATGCGTTGTCGCCACCGTCAAACTTCTGCGGACAAATCGCTATGCCGTAGATGCC GACTGCATGGAAGGCGGCGAACATTCCCAGCAGTCGTTCATTCTGGACGTTGAGGGTGCT CGATCCGTACGCATTGACGGTATGAAGCTGACCTCGTGTGACGTTACGGCGCCGACGGAG AAGAAAGCATCACGGGAGGTTCCCCTTCCTAGTTTTTCAGCTAGGCGTAGCCAGGGACCG AGCCCGGCTGGGGCCAAAAAGGCGACTCCTCCGACAAAGCTGATCCGTCAGTGGCAGGTG GCCAACGAAAATTGTCGTGGTGGTTCAGGGGATGACCCGCAGACCGAAAAGGCCTGCAAT GCAAGAGACGCGTTGGCCCGCCGGCTTGAGGCCGCTAAATGGTGCTACGGCAAGAACGGC CAATCCGGCTACCAGTACAGATGGCACCGCTGCGGGAAGGGTTCGATCCACTTCTAG
Region Details
| Region | 1 |
| Region Length | 9.8Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 206710-216606 |
| # tRNA | 0 |
| # Total Proteins | 9 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 3 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Vibrio_Ceto_NC_042094(1) PHAGE_Burkho_Bcep22_NC_005262(1) PHAGE_Strept_Mildred21_NC_042008(1) PHAGE_Brevib_Jimmer1_NC_029104(1) PHAGE_Paenib_phiIBB_Pl23_NC_021865(1) PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(1) PHAGE_Vibrio_VHML_NC_004456(1) PHAGE_Brevib_Jimmer2_NC_041976(1) PHAGE_Vibrio_VP882_NC_009016(1) PHAGE_Lactoc_Tuc2009_NC_002703(1) PHAGE_Brevib_Osiris_NC_028969(1) PHAGE_Vibrio_VP58.5_NC_027981(1) PHAGE_Agroba_Atu_ph07_NC_042013(1) PHAGE_Lactoc_50101_NC_031040(1) PHAGE_Burkho_Bcep176_NC_007497(1) PHAGE_Cronob_phiES15_NC_018454(1) PHAGE_Lactoc_phiLC3_NC_005822(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 11.11% |
| GC % | 54.01% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|SRUM01000003.1| Mesorhizobium sp. M3A.F.Ca.ET.201.01.1.1 584299, gc%: 63.81%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 9 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 206710..208473 | PHAGE_Brevib_Jimmer2_NC_041976: RNA polymerase sigma factor; EN844_09790; phage(gi100049) | 6.70e-14 | Showinfo_outline |
| 2 | 208717..209376 | hypothetical protein; EN844_09795 | 0.0 | Showinfo_outline |
| 3 | complement(209398..210825) | hypothetical protein; EN844_09800 | 0.0 | Showinfo_outline |
| 4 | 211130..213613 | PHAGE_Vibrio_VP58.5_NC_027981: gp42 protein; EN844_09805; phage(gi937456113) | 3.62e-19 | Showinfo_outline |
| 5 | 214063..214434 | hypothetical protein; EN844_09810 | 0.0 | Showinfo_outline |
| 6 | complement(214490..214828) | PHAGE_Lactoc_50101_NC_031040: hypothetical protein; EN844_09815; phage(gi100003) | 9.23e-09 | Showinfo_outline |
| 7 | 214992..215324 | PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; EN844_09820; phage(gi401817606) | 5.27e-07 | Showinfo_outline |
| 8 | 215336..215860 | PHAGE_Strept_Mildred21_NC_042008: hypothetical protein; EN844_09825; phage(gi100091) | 4.95e-05 | Showinfo_outline |
| 9 | 215941..216606 | PHAGE_Agroba_Atu_ph07_NC_042013: structural protein; EN844_09830; phage(gi100615) | 4.53e-12 | Showinfo_outline |
Sequence
>206710..208473
MesorhizobiumspM3AFCaET2010111MSTDIQLKGDSLRRQTERSKQYADEHGLELVEDFKLEDIGVSAFKGDNLSSGNLGRFLDAVKAGRIPEGSYLLVESFDRLSRQKLNASVSLFFDITSNGINLVTLSDNQLYKAGEAEFAQLIMSIVVMARANEESEMKSQRLSAAWDAKRRAVGEKKLTGLCPAWLQLSEDRKNFHVIDDRAQVVRRIFEDSASGQGSFVITRRLNDSGVPAFGRSTGWVQSYVTKIIQARAVLGEFQPHTKQNGKRVPLGDPIPDYYPQIVDENLFLRAQFARGKRRIEGGGRKGEALRNLFTHLATCGYCGSPMHFLNKGIGPGGGTYLKCSHALRGLDCVPTAWRYQDFERSFFLFVNEIDLAEMLRASSQKSEVLILDERAVALAEKKSELELKRERTYALIDDGAISVDFLTTKLRECEAELVSIEQQIVDVDRQRQEIREQQSISPDELRLLIDQLQQMKGPEAFSQRSMLATRLREIVTELKLEVEGSRPRQGKAAALLDAADIDPQERSQILDLIERSDREAQRHNRSFSVVLADGVSRRVVLKNDDPASFVAEVLVGKDGAISGSDRGMPIGWSDGWDKVFDEPATAQ
Sequence
>208717..209376
MesorhizobiumspM3AFCaET2010111MHQDVSKPSPTTITQQYASWFDERIDQFIEEHKGRFDSVSTFKKRNGYLITISFDHSRRNQRHEGAASIDLPKGKSQLDTFTDLYNYLCRELIGRNYHRPWFDPLKPLAIGCLDMNGSRYWRSMGALENPHIHSIWIFNDQVREGFQKLVADRQRFSALKERFYLREMDIQTLDHDHRNSTGEGRATSYMAKFIGHNNSELLVGDDFRVLPISKPTAPH
Sequence
>complement(209398..210825)
MesorhizobiumspM3AFCaET2010111MESQFDHTKYSTVVFIDSMVALEGKPLDKLPWDELDPTGPILILVVSQVNSEIDKRKRDGRLAKRARAFNRLISPAAETAAPHRVSEGPPAIDIAIARHRRIDWDQYDDLDPDGGDDRVVAQILNARDVPDQRKLLLTNDTNPIAIASRHGLKSWRMPDHWLADPEPSPSDKEIVRLKARVRELEQAQPNVEISLQYGAEQPQTVFRVEPIPTEARKAITSFVIRQNPSQDDDSPFNVLRDYSYGDCYREYRTKVVPAYAASVHRFLEVEYGQIPFTFSLKNVGDLQAESLVLKLTSSGGSLHDRFTCYPIFGPSAPRPKSGILGGIRFNPNSIRSPVGRHDMHFAVGPDRAKIIEIHCADFRHGRSWEFEGIATIDPHCEGPFVIDVEVTASNMRGIQRQRFDFAFAVENAKISDLVDLLKRTYRTPTPMKDRFNAEVRAKNWSWMEFVDVHGQQQDVDEDDDFDDDDQEEEAD
Sequence
>211130..213613
MesorhizobiumspM3AFCaET2010111MIMENLNSAASDDADSPPVVSSPTDPHERASWLTRKLRLSINRRLIDKNSLGDEGAFVNGFVPHQLDVKALLGNIMQGYSYCAELKGPRSNSNFKASDLLSVDIDGTMTLDEAVNDQFVAAHGTFIYTTASHTDDKHHFRIGFALERTIEDAAEMRAATRSLILKFGGDAAASDPSRIFFGNRKTECVYFNRGIPSPILDELIAQGRDADQPDTDFGRRASTRSRITISPGKVVISAKRGSGFLDDFDRSEQLFCPFHKDTRPSAFVIQNRYGQKGIRCSACVQSFWATGYNDHYDFQSFEKAAHAILTIPKATSDIDKFFPSEDDAVHMAAATIDFTDQEHLKHWQFVQGATFIRSPKGSGKTELLKNLVQEERGRFLLIGHRRTLIRSMCNRLGLDCYLDDEKGPRSRRHDRYGICLDSLMKIKTDKPYDYILIDESEQVLAHFLSSTMAEKRLPVLHRLRHLVSSAKKVIALDADLSWNTFRRISEWRNKPDQAGSNRLIINTFRKDRGTIHLVPTKTQLIGEIHRAIADGKRCFITANNRGFIEKLEKSLLDKDSTARLITITSKTVQRTDERIASFLADPKSESSKYQVILASPSLGTGVDFSFDNEEDRFDIVFGMFDPLLLTHFGCDQQLARVRSPKEVRVFVNPARFTFETDLDTVTADALSFEMMGHLIKGYDPAGREEYLDQRDNDPLLRIAASVLSVERASKNDLKAHFIEYVQRQGWEVVHVQRDESVYEVGSLAWVTGSALHKEHAVRRLVEAKSLSDDEFEKVPDQHRVKRHTFTKLTLHRSPRWRGSPTREGSGKTGHEKKGNMMFITVERG
Sequence
>214063..214434
MesorhizobiumspM3AFCaET2010111MAFEGFKLVAAPKREASDPASKRKQRLLMQIDHQLYMAEPDNRLRKFRGRWWTTDAEGKLMLSIKYGKVPLELAKGKHAIACNDMDDLVEALKKAKAIAVDGTFDAQLATISGQVRARFKKGD
Sequence
>complement(214490..214828)
MesorhizobiumspM3AFCaET2010111MSAIDKFGMILKELRKLRGLTQDDLAARTGRSLDAVSQWERGVNWPSFETLIRLSEALDVPVETFFDQTPVKRSDGRLKREIEARLLLGDLTDSDLVVAVEQLRALARRRSE
Sequence
>214992..215324
MesorhizobiumspM3AFCaET2010111MEEAAAPAATIDCPYCAEPINPKSKKCKHCGEILDPQMREIELLKSQRNSPQVFMNAGGGAAAAAAATGAGGPVKRFPHWFHIILVILSGGLWIPIYLLMYLFRNKRYYY
Sequence
>215336..215860
MesorhizobiumspM3AFCaET2010111MGASSRFCLASRASRTVLAAIIVALPRVAFADSNFRGFSISDTFEQVQQKAKADGYEIKVLPPVVATDDDQNHLFLKLKGETCASMVFGIKQSITQMDLYPCFYNGKELALQQVVSEFVDRFGGQPEADVYQGSNCTNAEPLIYRGNTKEGELYEIFQDCVVAIRIKPGSKVQF
Sequence
>215941..216606
MesorhizobiumspM3AFCaET2010111MKTVLSTLSLVVGTTTANATDALPIADGAYMRSADYCEQFRQGKLDFIEFSVSKGGHYYEFPESGCVVATVKLLRTNRYAVDADCMEGGEHSQQSFILDVEGARSVRIDGMKLTSCDVTAPTEKKASREVPLPSFSARRSQGPSPAGAKKATPPTKLIRQWQVANENCRGGSGDDPQTEKACNARDALARRLEAAKWCYGKNGQSGYQYRWHRCGKGSIHF
Mesorhizobium sp. M3A.F.Ca.ET.201.01.1
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 584299 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: EN844_09790 (Region 1)
Locus: EN844_09790ORF Start: 206710
ORF Stop: 208473
Strand: Forward
Protein Sequence: MSTDIQLKGDSLRRQTERSKQYADEHGLELVEDFKLEDIGVSAFKGDNLSSGNLGRFLDAVKAGRIPEGSYLLVESFDRLSRQKLNASVSLFFDITSNGINLVTLSDNQLYKAGEAEFAQLIMSIVVMARANEESEMKSQRLSAAWDAKRRAVGEKKLTGLCPAWLQLSEDRKNFHVIDDRAQVVRRIFEDSASGQGSFVITRRLNDSGVPAFGRSTGWVQSYVTKIIQARAVLGEFQPHTKQNGKRVPLGDPIPDYYPQIVDENLFLRAQFARGKRRIEGGGRKGEALRNLFTHLATCGYCGSPMHFLNKGIGPGGGTYLKCSHALRGLDCVPTAWRYQDFERSFFLFVNEIDLAEMLRASSQKSEVLILDERAVALAEKKSELELKRERTYALIDDGAISVDFLTTKLRECEAELVSIEQQIVDVDRQRQEIREQQSISPDELRLLIDQLQQMKGPEAFSQRSMLATRLREIVTELKLEVEGSRPRQGKAAALLDAADIDPQERSQILDLIERSDREAQRHNRSFSVVLADGVSRRVVLKNDDPASFVAEVLVGKDGAISGSDRGMPIGWSDGWDKVFDEPATAQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EN844_09790, RNA polymerase sigma factor, phage(gi100049), PHAGE_Brevib_Jimmer2_NC_041976
Homolog/Ortholog E-Value: 6.70e-14
Locus 2: EN844_09795 (Region 1)
Locus: EN844_09795ORF Start: 208717
ORF Stop: 209376
Strand: Forward
Protein Sequence: MHQDVSKPSPTTITQQYASWFDERIDQFIEEHKGRFDSVSTFKKRNGYLITISFDHSRRNQRHEGAASIDLPKGKSQLDTFTDLYNYLCRELIGRNYHRPWFDPLKPLAIGCLDMNGSRYWRSMGALENPHIHSIWIFNDQVREGFQKLVADRQRFSALKERFYLREMDIQTLDHDHRNSTGEGRATSYMAKFIGHNNSELLVGDDFRVLPISKPTAPH
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EN844_09795, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 3: EN844_09800 (Region 1)
Locus: EN844_09800ORF Start: 209398
ORF Stop: 210825
Strand: Backward
Protein Sequence: MESQFDHTKYSTVVFIDSMVALEGKPLDKLPWDELDPTGPILILVVSQVNSEIDKRKRDGRLAKRARAFNRLISPAAETAAPHRVSEGPPAIDIAIARHRRIDWDQYDDLDPDGGDDRVVAQILNARDVPDQRKLLLTNDTNPIAIASRHGLKSWRMPDHWLADPEPSPSDKEIVRLKARVRELEQAQPNVEISLQYGAEQPQTVFRVEPIPTEARKAITSFVIRQNPSQDDDSPFNVLRDYSYGDCYREYRTKVVPAYAASVHRFLEVEYGQIPFTFSLKNVGDLQAESLVLKLTSSGGSLHDRFTCYPIFGPSAPRPKSGILGGIRFNPNSIRSPVGRHDMHFAVGPDRAKIIEIHCADFRHGRSWEFEGIATIDPHCEGPFVIDVEVTASNMRGIQRQRFDFAFAVENAKISDLVDLLKRTYRTPTPMKDRFNAEVRAKNWSWMEFVDVHGQQQDVDEDDDFDDDDQEEEAD
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EN844_09800, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 4: EN844_09805 (Region 1)
Locus: EN844_09805ORF Start: 211130
ORF Stop: 213613
Strand: Forward
Protein Sequence: MIMENLNSAASDDADSPPVVSSPTDPHERASWLTRKLRLSINRRLIDKNSLGDEGAFVNGFVPHQLDVKALLGNIMQGYSYCAELKGPRSNSNFKASDLLSVDIDGTMTLDEAVNDQFVAAHGTFIYTTASHTDDKHHFRIGFALERTIEDAAEMRAATRSLILKFGGDAAASDPSRIFFGNRKTECVYFNRGIPSPILDELIAQGRDADQPDTDFGRRASTRSRITISPGKVVISAKRGSGFLDDFDRSEQLFCPFHKDTRPSAFVIQNRYGQKGIRCSACVQSFWATGYNDHYDFQSFEKAAHAILTIPKATSDIDKFFPSEDDAVHMAAATIDFTDQEHLKHWQFVQGATFIRSPKGSGKTELLKNLVQEERGRFLLIGHRRTLIRSMCNRLGLDCYLDDEKGPRSRRHDRYGICLDSLMKIKTDKPYDYILIDESEQVLAHFLSSTMAEKRLPVLHRLRHLVSSAKKVIALDADLSWNTFRRISEWRNKPDQAGSNRLIINTFRKDRGTIHLVPTKTQLIGEIHRAIADGKRCFITANNRGFIEKLEKSLLDKDSTARLITITSKTVQRTDERIASFLADPKSESSKYQVILASPSLGTGVDFSFDNEEDRFDIVFGMFDPLLLTHFGCDQQLARVRSPKEVRVFVNPARFTFETDLDTVTADALSFEMMGHLIKGYDPAGREEYLDQRDNDPLLRIAASVLSVERASKNDLKAHFIEYVQRQGWEVVHVQRDESVYEVGSLAWVTGSALHKEHAVRRLVEAKSLSDDEFEKVPDQHRVKRHTFTKLTLHRSPRWRGSPTREGSGKTGHEKKGNMMFITVERG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EN844_09805, gp42 protein, phage(gi937456113), PHAGE_Vibrio_VP58.5_NC_027981
Homolog/Ortholog E-Value: 3.62e-19
Locus 5: EN844_09810 (Region 1)
Locus: EN844_09810ORF Start: 214063
ORF Stop: 214434
Strand: Forward
Protein Sequence: MAFEGFKLVAAPKREASDPASKRKQRLLMQIDHQLYMAEPDNRLRKFRGRWWTTDAEGKLMLSIKYGKVPLELAKGKHAIACNDMDDLVEALKKAKAIAVDGTFDAQLATISGQVRARFKKGD
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EN844_09810, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 6: EN844_09815 (Region 1)
Locus: EN844_09815ORF Start: 214490
ORF Stop: 214828
Strand: Backward
Protein Sequence: MSAIDKFGMILKELRKLRGLTQDDLAARTGRSLDAVSQWERGVNWPSFETLIRLSEALDVPVETFFDQTPVKRSDGRLKREIEARLLLGDLTDSDLVVAVEQLRALARRRSE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EN844_09815, hypothetical protein, phage(gi100003), PHAGE_Lactoc_50101_NC_031040
Homolog/Ortholog E-Value: 9.23e-09
Locus 7: EN844_09820 (Region 1)
Locus: EN844_09820ORF Start: 214992
ORF Stop: 215324
Strand: Forward
Protein Sequence: MEEAAAPAATIDCPYCAEPINPKSKKCKHCGEILDPQMREIELLKSQRNSPQVFMNAGGGAAAAAAATGAGGPVKRFPHWFHIILVILSGGLWIPIYLLMYLFRNKRYYY
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EN844_09820, hypothetical protein, phage(gi401817606), PHAGE_Cronob_phiES15_NC_018454
Homolog/Ortholog E-Value: 5.27e-07
Locus 8: EN844_09825 (Region 1)
Locus: EN844_09825ORF Start: 215336
ORF Stop: 215860
Strand: Forward
Protein Sequence: MGASSRFCLASRASRTVLAAIIVALPRVAFADSNFRGFSISDTFEQVQQKAKADGYEIKVLPPVVATDDDQNHLFLKLKGETCASMVFGIKQSITQMDLYPCFYNGKELALQQVVSEFVDRFGGQPEADVYQGSNCTNAEPLIYRGNTKEGELYEIFQDCVVAIRIKPGSKVQF
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EN844_09825, hypothetical protein, phage(gi100091), PHAGE_Strept_Mildred21_NC_042008
Homolog/Ortholog E-Value: 4.95e-05
Locus 9: EN844_09830 (Region 1)
Locus: EN844_09830ORF Start: 215941
ORF Stop: 216606
Strand: Forward
Protein Sequence: MKTVLSTLSLVVGTTTANATDALPIADGAYMRSADYCEQFRQGKLDFIEFSVSKGGHYYEFPESGCVVATVKLLRTNRYAVDADCMEGGEHSQQSFILDVEGARSVRIDGMKLTSCDVTAPTEKKASREVPLPSFSARRSQGPSPAGAKKATPPTKLIRQWQVANENCRGGSGDDPQTEKACNARDALARRLEAAKWCYGKNGQSGYQYRWHRCGKGSIHF
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EN844_09830, structural protein, phage(gi100615), PHAGE_Agroba_Atu_ph07_NC_042013
Homolog/Ortholog E-Value: 4.53e-12
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download