Submission Results
Sequence Name: Not Available
GenBank Accession Number: UDBR01000011.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: UDBR01000011.1.PHASTER.zip
gi|00000000|ref|UDBR01000011.1| Escherichia coli strain VREC0615 genome assembly, contig: 169349, gc%: 47.54%
Download summary as .txt file: summary.txt file_download
Total: 2 prophage regions have been identified, of which 0 regions are intact, 2 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 10.9Kb | incomplete | 40 | 9 | 48573-59520 info_outline | PHAGE_Escher_vB_EcoM_ECOO78_NC_041926(3) | 39.68% | Show info_outline |
| 2 | 8.7Kb | incomplete | 40 | 8 | 60724-69440 info_outline | PHAGE_Vibrio_12B8_NC_021073(2) | 39.22% | Show info_outline |
Region DNA
>1 48573-59520 ATGAAGATTCTGAACCAGAGTCTGAAATCAATATTACCCCCACCGAAGATTAAACCATCT GAATGGTGTGAACAATATACTGTATTTCCAGATGGACCACTGGCACAACAAAAAACTAAA TTATTTTCATTTCAAGTAGAACCCCTAAACGCCACAGTAGATCCATCAGTACAGAAGATC TGTTTAATGAGTAGTGCACAATTACTCAAGACAACAATACTACAAAATGCAATGCTTTAC AGGATGGCAAATAAACCCTCCCATATGATATTTGCGGGTAGTAGTGGTAGTACTGTGAAA AAGTTCCGTACTGGTAAATGGATGGATACTATTAATGCGTGTCCAAACCTTCAAGCATTA ATCACTGACAAATCAGATAAGAATGCAGTAAACGATCTACACACTCAACAGAACGTTGAC GGTACTAAGACATACTTTGTTAACCTCAATTCTAGCCAGTCCCTACGCTCGCTTACAGTT CCTGCAATCTTCATTGATGAATTATCAGGTGTAGATCCAGAACAAGATGAGGGCAACCCC CTATCACTCATAGAACAGCGTGCAACTCAGTTTGGTAAGAACTCCCTGATCGTGATGGCC TCCACACCATTAGTACAGGACGATATGATCTGCCAGCAATGGGAACTCTCAGACCAGAGA CATTTTCATGTCGTGTGTCCACATTGTGATCATGACCATATTTTAGAATGGGAGAATATA AAGTTTGAATGGGTGAAGTTCAACGAACGACGTAATGCACCAGAACCCACTACAGCACGC CTACACTGTCCAGGATGTGATGAAGTAATCACTGAAGGGCAACGTGCACGGATGGTTGCA AAAGGTTACTGGAAAGCACACAGACTGCATGTGATGGGTTTCAGGGGATACCATGTTAAT AGACTATATTCACCGATTACTACTATTGAGAAGATTGTTGAAGACTTTAAGAACTCATGG ATAAACTTTGAAGAACAATCTTTCTATAATAACGTACTCGGTTTACCGTGGGTAGATAAG AATAATATTAAAGAAGATCTTACAGTACTGGAAAACTTACGCGACTTTGATTTAGATGTA AAACATATTCCAGATAATGCACTTGGTATTGTACTGGCATGTGACCAACAGATAGACCGC TTAGAATGTAGTACTATTGCATTTGATGAAAAGAATATATGGGTTCTGGACCACCGTATG TTTTATGGTGTCGATTGTACTAAGTATGAAGATAAGGCATATACTGAACTACTTAATTAT AGTAAGAGTATATTTAAAACCACTTCAGGTAGAAAAGTACCAGTACTGAGATCCTTTATT GATAGCTCAAACGGATCTGCAACCAGTTCCATATATCGCTTTTGTTCTTCCAGTGGGGGA CGATGGCATGCAATTAAGGGTGCAAACACACAGACTGGTCCCATCACGAAGGATTCCACA ACGGCAGGACATCAACTGGTTAATATTAATACTCAAGTACTGAAGCACCAGGTTAAGAAG TTATTACGACAGGCATGTGAAGGGGGAGAGTATAGTACTAATATACACTTCAGTCATTCC CTTGTCGATGATTACTTCCTCCAACTTACAGCAGAAAAACTAGTACGAAAAGGTTCAGTG ATGGTATGGGAGAATCCAAATGGAGAGCGTAACGAATGTCTCGATACGCTCGTCTACTCA TTAGCAGCGATTGATCACAAGATACAGGCACTTGGTGCACAACCGTATAGGAAGTTGCGA GAGTATAGAGCTAAACAAAAAGAACTAAATACTAAAGTAGAAGAATCCATAAAAACTAAA GCAGAACAACAACCAGTACAGAAAGAGAAGCAGAAATCAAAACCTAAGAAAAAAGGACTT TCAGCACTTAATAATCGTAACTGGTTTTAATAAGGAATTAATATGAATCCACGTAAGACG GACTTAACTAGCCCGATCTTTATTGGTGAAACTATAGTACTAGACTTCCCATCAACAGCA ACGATTAAAATCATTGATGCAAAAGGTAATGAGCAAGAATACTTTCCAAATTTACCCATT GATACATCTCAATGGGTAGCTGGTGTCAGTACTGCAATTATTAGCGATGGTAGTATGTCT GTACAACTTTTCACTGTTAAAGATCCACTTGAAGCAGCAAATAAAATAAATCAGTTACAG GAATTGATCGATGAAATTGATATGGTTATTGAATCCAAGATTCTTGGGGGTGGTACTACA CAACTTACCATTAATAATAAAACACTAGTAACAGAAAGTGCTGAAGTACTTTACCGTATG CGACAAGTATATGCAAAGAAACTTGCAGATGAAAAGGCACGTGTACGAAAAGTTAAGACG GGCAACCCCATCAAATCAATTACACGTTTTACAAGATAAGAGGGGAATATGTTTAATTTT AATTTTAGAAAGGCAAAGGAACAGCCAAAAGAAGAACCAAAACTATATATTGGTAAGGCA AAAATACGTACTGAACCAGTACTTGGTAATTTAGGTATTGAAACCAAACGTTCCATTTCT TCCATCGGTAACGGTAACGCAGCCGCACAACTTGGTACATTTGGTGCAGTTGGTAAGAGT GGCTCGATCAATGCCGTAATTAACCGTGTATTGAACACGGCAGTACTACAAAGTCGCCAG CTTAGTATGAGTAACCCAATTCATAAGAAGTATATTGCACAGAATGCCAGTAGTGTATGT GGTGCAAATGGTATTACGTATCGTCCATGTGTTCACGTTGCTGAAGATGACAATGTTAAT AATGATATTAATAAACGTCTCGCCGATGCGTTCTACTCATGGTGTGAAGACCCCGCACGT TTTTCCCTAAATGGAAAACTTGAAATGTCCAAATTCCAGTCACTGGTAGAGAAGACACGT TCAATTGATGGTAGTTGTTTTATTCGTATCCATCCTGGTATGAAGATTGAAGTACTAGAC AGTACTGTAATTGATACGAAAGGTAATCAATGGCTAAGTAATGGTAACTATCGTTCAAAT GGTATTGAGTTTGAAAAAGGCACTGGTAAACCCGTTGCTTACTTTCTAACACAATATGAC CCCGTATCGTACTCAGTTAGTACTGAAGCAGAACGTGTACCCGCAGAAGAGATCCTTCAC TTATTCAGTACTGACTATCCAGAACAGCAACGCGGCATTCCCGATATATTTTGCGGTACT GGACTACTGGCAGACCTGGATAAATTCATGAGGGCGTCAATCAAGACGCGACAATTAGCA GCGGAAAGCATGGGTTTTATCACGAATGCGTCACGTGATGCATCATTTGAAGATATTGAT GATGATGACGATTCTGATGTAGATGAATACCAGGTTGCACGTATGGAGGGTGGAGTACTG TTAGAACTTCGTGAGGGTTAAGATGTGAAGTCACTCAGTCCATCACAAACATTCGACGCA CTACAGGAATTTCTAGATAACCAGTTGATTTTCATAGGGATGTCACTCGATCTTACACCA CAGACGTTAACAGGTTCGACCGCAGGGGCATCATTCAGTGCCTCGAAGTTAACAGACAAA ATTCAGCAAAATACATTTCTTGCAAAACAAAACAACCTGGTTAAGTCAGTACTTCAACCT TTGTATATTAAGTGGCTCAAGAATGAAATGCTAAATAACCCGATGTTGAAGGATTTGCCA TTTAGTAAATTTACTGAACTAACTGAATGTAATTTCATTCCACAACGTCATATTAGTCTA GACCCACTGAAAGATTTACAGACTGAGATTCTCGCAATGGAAAATGGATTAAAGAGTAAA GAACAAATAATTTCTGAGATGGGCTATTCACCAGTACTAACCCATGAGCAGATTACTAAG GAAGAAACAGATGGAACTAAACAACCAGACGAGGGCGATTCAAGCACAGACAATCAGTAA TGACGGTATCGTTAGTATTGCATTTGCAAGTGAATTCCCCGTACAACGTGAAATAAACGG TAAGGTATATGATGAAGTACTGCTATGTGGTACTGATAACGTTGATCTTTCCCGTATTAA TCAATACATGTGCCCACTACTAATTGACCATGACCAGGAAAAACAAATTGGTTCAGTACT TAATGCTTCCATTGATACCGACCGCGTAGCACGTGCTGAAGTAAGTTTTTATGACACTGA ATCATATATCTATGACATGGTTAAAAAAGGCATGCGTGATGGTATTAGTGTTGGTTATAA CATTCTTGATTATTACATCGATGGTATCAAGTTAATTGTTACCCGCTGGATGCCATATGA AATCAGTAGTGTAGCTTGCCCCGCTGATTATGTAGGTTCCGGAATTAATCGTTCTCTTCC AACTATAAATACAGATGTACAAAACGAAGAGGAAAATCAATTCATGGATGAACATAATCA AGGTACTGAAGAAGAGATTACTGAACCAGTACTGGAAGAAGAAGTAATTACTGAACCTGA ATTACAGGAAGTTGAAGAAGTACAAGAAGAAGTTATTACCGTAGTTGAACCAGAAGAAGA GATTACTGAACCAGTACTGGAAGAAGAATCCAGTACTGAAGAAGTAATTGAAGAACCAGA AGCTGATGATTCAATTCGCGTAAATGAAATTCGTAGTATCGGTAGTACTTTCAATATTGA AGAAAGCATTATTACTACAGCCATAAATACAAATACTAGTACGGAAGAATTTAAGGAACA AATTCGCAGTACTGAAAAACAAAACCCTAACGTTAAGGAAAACAAAAAGATGGATAAAAA TCTAATTAAGGCAATGGTCGAAGCCGCAAAACAAGATCGCGAAGTACAATTTGAAGGTGC TGAACGTGGTATCAACGGTGGTTTTATTCGTAATTTCACTGGTGCAGAAACTACCCCAGC AACTGGTAATGATCTGGTACAACAAGTATATGCAGATACTTACATTCCAGAACTACTGAA GCGTTCAGTACTGGTAAAACTAAACCCAACTGTTATTTCCGGTCTAGCGGGTCGTGGTGT ACTAAATCTACCAGTAGCAAAAGGTGTTACACCTGCATTTAAATTCTACAAAGAAGGCGA AGCGGTTGCGTCCAGTGTTGCAGAATTCGGTTCAATGATTATGTCCCCGAAAATCTTCGC AGGTGAGATCCCAGTTTCAAAAAGTCTGATCCTAACCTCTCCAAACGCTGAAGCATTTGT AGAAGCTGAATTACTACGTCATGCCGCAGTTGGCCTAGAATCTTTCGTATTCGGTGAAGT ACTCGCAAAGGCTCCAGTACTGGATTCCGCTGCATCTGGTATTATCGACGAAGCTGACCT ACAAGCTGCAATGGCAAAACTCGGCACCGCTAATGTAGACACCGCTACTTGTGTTGCAGT AATGAACTCTAAGCAAGTTGCAGCATTCCGTCTACAACCAATCGCAGGCAATCACGCTGC AATTATGATGGTTGGTCCACAGACTGATGCAGGTCGCACTATTGGTGGTGAACTATTAGT AATCGTGTCCGAGAACGTTCCAGACGGTTCAGTACTGATCGGTGACTTCTCCCAGCTCTA TATTGCACAGTGGTCTGGTCAAGAAATCGACATGGATACTACTACCTACCGTAACCGTGC ACTAGTAGCGTATCGTGTTTGGGATTACCTAGACGTTGCATTGTCCCGTCCTGAGTACTT CCTAAATCTAAAAGCTAAGGCTTAATAACTATGAGAGCATTCATTAACACACAGAAAAAT CAGTTTCTGGATGCTTTCGGTGAAAATCTCGTCATATGTCAGAATGGAGTAGCAAGTACA GTTACTGCTATTTTCGAGCGTGACGAGATTTTTTTTGAAGATACAAATACCGTAGTTTCA TATTTCACATCTTATTCTGGATTAATTCAGTACAGTACTTTCACGCTTAAAGGGACTGAG TATGTCGTAAATAGAATAGAGGATGACCTTAGCGGCATCTCTAACTATTTCTACATTCAA AAAATTGATCTTGATAAGGATATATAATGCGAACTTCAGACTACACAATACGGAAATTTT TGATTAATAATCTCAGTACTTTGGTAAATCTTCAATATCAATCGAGAGCAACGGTAGACG ACAAACCAATGTTATACATCGGTGACAGTACTGTAACACGTTCACGCATTCAAAAAGCAA ATACATTAATTAATGGTCAATTAATACCACGTGGGATTAATTATCTCTGTGAATTTAGAG TGGACTTTGTAGCAGTAGGCGAAAATTATAAACTTGCATCAGATGAAATTAGTAAAGTGA TTGATGCAATCTATGCAAGTGGTTTTATTAATGAATTGAACAAACTACTTCCAATGGATG TTTTCAATGTTGTTCTGGAAGAGAGCTTAATGACTACCCAGGCCGAAGCAACTAATACGA TGTATGTGCATACACAAACTATATCTTTTAGCTATGGGGAATAATTTATGGCTTTTATTA CTAACAACACAAGTGTATGGATTAACACCGACACATTAAACAGTGACCCCAAATCGAAGG GATTTAAAGAAGTACCAGAATTAAGCGGGTTCCCTTCATTCGGTCACAGTACTGCAACCC TTGCTATTGAAACATATGACTCTGAATACATCGAAAAAGTAGCAGGTGATAGCACATATG GTGATGTCACTATTACGGTTAACTGGGTTCCTGCTAAACATAAGTTTCTTGATGACATCG TAAAAAGTCGCCAATTAGTACAAATGAAGGTAGAGATCCCCGATGAAGGACAGAATGACC TTACGGTTAACTATGCACTTTATAATGGTTATCTGGCTTCTGTATCCACCAGTGGTGATT ATGATTCTGTTACTTCCCGTTCCTACGTATTCACCCCAAACGAACAACTTTCTTCGGGTA TTCTTGACAGTACGATAGTCCCTCTAAATCGCGGAGACTGGGGCGTAGGTGCAAACGGTA TTGAGTTTCCAAGTTATCAGGGGCGTGACGGTAATGCTTTTATTAAGATCCCTGGTGCAG GTTCACCAACAGGGACAGATGTACTCGGTATTAATAACCTTGATTCGAACTTTGGTACAC AATTGGTTATCAGTAAGACAGGTACGCCAATAATTAACGTGCGTAACTATGGTGCATCTA TGGGGGCATGGTACAAGGTCTATACCAGTGCTGATAAACCTACACTGACAGAACTGGGTG CTGCATCAAGTGCATCCCTTGCAGACTACGTACCGATTACCCGTACTATCAATAGCAAAC CACTAACTGCTAATATTACACTACTGGCTTCTGATATCGCTGATGTATACAGTAAGACGT ATATAGATCAGAACGTAGTCCCAAAAGTATTCCAGTTAAACGGTCATGCACTATCCGGTA CGGCATTAAACTTAGTTGCCGCAGATATTCTTGATGTGTATTCACAGACTCAGGTTGATA CTTCATTTGTTAAAAAAACAACTACTGTTAACGGTTTAAGTCTTTCCCAGAATATAACAC TGACAGCCGCACAACTCCCAGATATGGCAAGTATTGTTTTTACTAATAACACATATGTAC CAAAAACATACTTAATCAACAATAAGCCATTATCAGGAACTAACATTCAATTAGTTGCTG CTGATATTCCTGATGTGTACTCACGTACCCAGTCAAATGATCTATTTGCACTACGTATCA CCACTATTAACGGGTATGCTCTTAACAGTAATATAGTACTGAATTTTGATGATGTAGGAA CATATTCAAAGAAACAGATCGATGACAAAGACAAGGTTCTGAAGGAAGATATTGATACGA AGGTAACAATTGTAGATGATATTCTTAAACTAAATACCCTTGTAAATAATTCATTAGAAA TAGATTTGAGTGATAGTAAAACTACATTCACCGTGACTCTATCACAACCAACGTCAAACT TCTCTGTACTAAATGCAAGTGGTAATGACAAAAAGAGTCAAACATTTCAGGTGCTTATTA AGCAGGGTACAGGGGCAAATAAAATATCCTGGCCTACAAACATTTTATGGTCTTATGGGC GTGTTCCAGTATTAACCTTTACAAAAGATTCTACTGATGTATTTCAGTTTGTCACAGTAG ACGGGGGTAGTACTTGGTACGGCTCTCTACTAATGGCAGATATGAAATAATGAAACCACA CAATATAGATAATGCATATCAAATGATCGAAGGTCAGTTTAAGTTCTTGGCACGTAATAC TGGCCTTACAACAAATAATAAGACACAGCACTATGTATTAAACCCAGATAATGTACTTGC AAACAACCGTCACTTTATTGCAGAAACTGGATGGGAGGCACAGCCGGAAGGTGATGCAAC TACAGAAGGTCAAAGCCTCCAGATTCTGGGGGCAATATATGTGTATCAGGCAACTAAAGA CCCTTTCTATCTACAGAAGGCAAAAGAGTACTTTAACGCATATCACAAGGCGTTCTATCG TGGTGCACCATTTCCAGATCCACCGAGTTCATCACTACGCTGTAATTGGATTTGTAATGG GAAGGCTCCAGTACTGGCACACTACCCATTAGATCCAGAATATCCGACGCATGGCGGTTT TAAAGGGACACTATTCACATGGGCTAATGGCCTTACAAAGATCCCACATGGTGCACCACA CTGGGGTGAATACCTCGATGCAGTATGGTTTGCCTTCCCTAAGCGTGCGGGACTTGGCTG GAATCAGGTTAACGCAACTGCTTATCTGTGGCTTGCCAATGAAGACTCAATAGACTGGGA CACTAAAGCACCAACCTATGACGTCGAATGGATCATTGATCGTACCGGACGTAAGGTAGA CTCAAACGGCACTGTACTGCAATCCGGTCTAACTGGTCAGGAAGGTACAGTACAGTTAAA GAATAAAACCATTACTGGTGAATATCGTTTTAACTATGCAACCCGAAACCCTGTAGAACA TGGCGGGTATATGTTCAAGCGTAATGAACGCTGGCATAACCGACCTGTACACGTACCGAT TGATAACTATGGTTCTTTGGACTTCTCTGATAATGCATCAGATGCCGAATTATGGTTTTG TCAGGCAGCCAAGCTACTTTGGGATATTACAGGAGAACGCCAGTATTATCTTGCGTGGCA ATGTGCACTATTAACCTGTTATGGATATTCAGATATTGACAAGTACGATATGTTCTTTCG TAAATCTACTATTGCCGTAACACCTTTTACTGATGGTATTTCATACGACTACTTCTACCC AAGTGAGCAAGTAGCATCATATTCCCGTGATGCACAGGGTTATATTGTAATAAATCAAAG TGCATCCGCACAGACGATGTTAGAACAACAATCAATCTGGTTTAAATTCAATAATAACTC AAAGTTTCATATTGAATATGGTGGTGTTGATAATACCAGTACTGCAATGTCAGTTTCTGC TGAAGTCACAGTGAATAAAACAAAAACAGAAGAAGGTGCAATTGATTATCGGTGTGGTCT ACCAATGACTAATCCAGATGGCTCTATCACTACAATGGACATTCCTATGAATCGTTTTAC ACGTGTAATGAAACCAGATGGCTCTAATTATATGACTGCTGATCTACGTATGATCGCCGA TTATGGAGATAACACGGTAACAAACTTTGAATATCAGAGTGGAGTACTTGGAAATTATTA CGATAACGTCGTGTCTACAACAATGGATGGTGACGGGGGACAGGTGGTGGGGTTTTGGAT ATTCACACCAGAGACTGCCAATATTCAATCTTTTACCTATCGTTCATATGATGATGATTT TAACTTTCGTATAAGTGATGATAATAAATGGCGTTGGTGGGCTATGCTCCCTGCAACAAA TGGTGAATGGGTTACAAAGACTTTTACTATTGCTGACTTCAAACTAAACGGTTATCAACC CGATCACCCCGAAATTGAAGATCCAGATAACCCAGGAGAATGGATTCAACCTGATCCTAT TCCCGCAAGCCCAGTACTAACGAACCGTGAATCTTTCACACTGCTACTTGATGCAGATCC AGTAAATGGTGTGAATGGGAAGATTGACTGGTATTGTATTAATGATTTGCCTGCGATGTA TACAGATGGTGGGACAGGTGATTATTCGGTCACAGTACTGCTTACGTTTAACGACACAAC TGGTAATGGTTACACAGCCCGTTTAGGTGACTGTACTATTAAGGATTATATGCTAGATAG TCTTGCGTATACTCCGGGTTTAATTCCGTTCTCTAACATTACCGATCCCTATGCCCAGTT ATATTCTGGGTGGCGTGGTCTACCGTATCCGGGTTATCAACTACCGGCGATCTGGTGCTT TAAAGGAACAGAAATAGATCATACTCGCTTAAATAACAGTATCAATTTTCTATATGATTC TCAGGCATGGTTTACAAATAAATTTAAACCATCATTACCAGGACCATGTGCACAGGCTTT CGTATGGAACAGACAGGACGCTTTAGCATATGCCCCTGATGGTAAGCCAGATCAATTCAT AATGCAGCACTGGTACGCCGAAGCATGGAGTGGATACGAACCAAGGGCTTTCTTTGGTGG GTGTGATGCAGTACATGAATTATGGTCACGACAAGACAGTACTGTAATACCTCCTAAACT AATATCTTTCTGCCAGAACTGGATGAACTATCTAAAATGGTTCATGAAAAATAATGGCGG TAAAGCTCCTACCTATTTTAGGGATAATGGTTCTGTAGAATATGATGGCTTTACCCCTCA TATGTCCGGTCTATGGTTAGCAGGGGCATGTATGATGGCTATCGCCGGATATCCAGATCA TGAGCTAATTCAATTACTATTTGATGAAATACAACTTAACTATGCAGTTATTTCACCAAA TCATGTAATGAATGGTACATGGCCTGCGTCAATCAGAACAGGTAATGAAACAACTGCCGA AAACAATAGTATGTTCTTTGGTTTCTATTCGGGTGAACTTTTACGCGGATTGGGGCTATA TGTGCATTACTACAATCTTCATAAATAA
Region Details
| Region | 1 |
| Region Length | 10.9Kb |
| Completeness(score) | incomplete(40) |
| Specific Keyword | portal,tail |
| Region Position | 48573-59520 |
| # tRNA | 0 |
| # Total Proteins | 9 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 66.6% |
| # Bacterial Proteins | 3 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Escher_vB_EcoM_ECOO78_NC_041926(3) PHAGE_Salmon_SSE_121_NC_027351(2) PHAGE_Entero_phi92_NC_023693(2) PHAGE_Salmon_PVP_SE1_NC_016071(2) PHAGE_Entero_Arya_NC_031048(2) PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995(2) PHAGE_Entero_4MG_NC_022968(2) PHAGE_Escher_vB_EcoM_ep3_NC_025430(1) PHAGE_Rhodob_RcCronus_NC_042049(1) PHAGE_Rhodob_RcRhea_NC_028954(1) PHAGE_Synech_S_CBS3_NC_015465(1) PHAGE_Escher_phAPEC8_NC_020079(1) PHAGE_Cronob_vB_CsaM_GAP31_NC_019400(1) PHAGE_Halomo_phiHAP_1_NC_010342(1) PHAGE_Synech_S_CBS1_NC_016164(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 33.33% |
| GC % | 39.68% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Region DNA
>2 60724-69440 ATGGCAGGGAATAAACAACAGATGATTTTTGAAATCACTGGTGATGAATCTGGGTTACAA AAATCTTTAAAAAGTGCTGGCAATGGACTTGCCGACTTTGGTGATCGTGCTGGTGGTGTA TTTGGTGGTATTAGTGGTGGACTAAGCACAATGGCAACTGGTCTTGGTGGTGTTGGTAAT GCGGCAACCTTGGCAATTACAGCTATTACAGCACTGACTACATATACAATTGGTCTTGCA AACGAGATCAACGCATTGACCCGTACAACCGGACTGAGTGCCGAGCAACTTCAGCAGTGG TCAGGAGCATTCAAAACCATAGGATTATCTATGGAAGAAGTTGGTTCGATTAACGAAGCA GTGATGGACCAGCTTGGTATTGCGTCTGCTGACGGTTCTGGTGTTGGTGCCGACTTAAAA ACATTCGGCGTAGATGTAAATAGCCTAATACCGACATTAAAACAGGCAGATGGTGGTTTA CAGGCATTGTCAAAAGTCTTTTTTGATATGAAAAAGAATGGTGCAAATCTTGCCGAAATA ACAAATATGATCAACGCCCTCGGTGGTGATGCTGCAAAACTAATACCGACATTCAACTCT TTTAACAGTGAGATTGAATTTAATAACTCTCTTGCAGCCCAGAACGTAGCAATGACTAAT GAACAGGCAAAAACATTTGATCTGTTAAGTCAGAATACTTCAGGTCTTGGTAGTGGACTG AAAACTCTTGCATTTGAAATTGTTACACCCCTCATTGATATTTTTAATGGACTCGTAAAA GCCTGTAAGGAAATATATCAATGGTTTGACAACCTCAAAACAAAAGCAGTTGAGTTTATT AATTCATTCTTTAACTGGGATTCAAATAATACGATCATACAGTCGTTATACGATCAGGTA ATTAAATTCTATGACATGATCCGTAATGTAGGCTCAAAGATTGGCCTTGAATTACCCGAG TTTACACCAGAGCAAATAGCAAAAGGACGTAAACACGTACAGACAGCAGCCGATGCAGTT TTCTCACCACTAGGCCCAGGTATTGGTGGTCTTGCTGCCCTTGCCCGTGGATATTCTCAG GAAGACTATAAACCAACCACAAAGGCATATACAGGAACGACAAAAGAGCGTTCTAACTTT GATGATGGTAAAGCAGGGGAAGAAGCGAAAAAAGCCAGTGATAAGGCCGCAAAGGATCGT ATTCAGGCTGCCAAAGTACTGGAACAGACTATGAATGGTATTGCAGGTAATGGTGCTGCC CTCCAGCTACAGCAATTTAATAAGACCCAGGATGAAATAGAACAACGCATTAAAACAAGT GCAACTACTCTCGGTAAAACTGAAGCTGAAAAGACTGAACTATTAAGAAAGCAGACTGAT TCACGTAAACGCCTGTATAAAGAAATGGTTGATTCAATGCTCACCGAAAGTGACCCACTT AAACTTGCCCAGAATATTTCAGCAATTGGTGGTTCTATGTCAGGGAAAGACCTTAATTCA GTACTGGCAGGTCAAAACGAACGTATGGGACTTAATCAAGATCCATTCAATATGAGTGCC GATCAGAACACGCTCGATACATTAGCAACAGAAGGACAGGCCGAATTAGCACTGAATCAA AGTCTGTATGAACAGAAGTTATTAAGTTATCAGGATTACCAAGATCGCATGGTAGCAATT CAACAATCTACTACAGACAAAATGAGTCAGGCTAATATTGATGCCCAGCAAAAGACACTT TCTATGTATGCAACGGGTGCTCAGGATCTCGGTACTACTCTTGCAGGTGTATTTGGTGAA AGTAATGCTATGGCAAAAGCTGCATTTGCAATGAGCAAAGGGATCGCAGTTGCCCAGTCT ATTATCAATATTCAGCAGGGTATTTCAGAGGCTATGAAACTTGGATGGCCTATGGGGATT CCAGCAGGGCTTAAAGTAGCTGCCGAAGGTGCCAATATTGTCAGTACGATTAAGGGTACA AAGATTGAAGGGCAGGCACATGATGGCTGGGACTCACTACCGAAGACTGGTACATATAAT CTTGAAAAAGGTGAACGTGTTGTAGGTAAATCTCTGAACCAGGACTTGACACAGTACTTG AATAATAAGGGTGGTGATAAAGGCGGTGATATTAAAATTGATGCCCCTTTAATTATTCAG GGTGCCGGAGAACTCACAGATTCAAAATTCCAGAGTATGTGTGATAAACACGCCGATACT ATCACTCAGGCAGTACGTAAAAGCCAACAGAGGAACGTCTAAGTAAATACAGTATGCCCA CATTCATGTGGGCTTTATAAGGAAAATATATGTTTAATAACTCTCTAATAAGTGATTTTA TACTTTCTGATAATATCCCCCAATACCAAAACAAAACATGGTCTGGTGAGGTAATTACCC GTATTGTCGGAACACAGTACTTCAGCATAAGTTTTAAGGTTACAACAAATAAAAAATACA GAACCGATTTAACAAACTTTCTTGCACTCTATTCTAGTGGCAGACCTTTTGATATGTCTC TTGGTTGGTGGGGCGATTATTCAGGCAATCAGGCGACGGGTATACAGGTAACAGCAGCCC GTACTGCCGGAGCTACATCTATTCAGACCAATACTAATAACCTTTCCCCTGGTGATTTAA TTCAATTCTCAGGACACAAAAAACTCTATCGTGTTATTGCCCGTAGTGGAACGACTCTGA ATATCTACCCTGGACTGATCCGAAATCTCCAGATAGGGGAAACTGTAAAATACGATAATC TAATGGGTTCTTTTATTCTTACACCTGCTAACTCTACATATGATCTACCAAGTACAAATA TTATTGAGATGACAATTACGGCAACTGAGAATATAAGGGGGTAATATGGCAATTCCAAAC GATGTACTAAGTAACCCAGAATTAGTAAAGTACTGGAATCTAATGAGAGGTGATAATAAG TCAGTTCTTACAGAAAGGGAATTATACCAGTGTGGAATCATGGTAAAACTGATTGATCTG TTACCTCCTACAGGAAGTAATTTATATCTTACTGATGCAGTAGTAGAACAGAATATTAAT GGCATTGTATATAAACCAATTCCAGATCTAATTGATTCATCCTTTGCGAACTATGTAGAA AAGAATCAGATTAATAATACCGGTACTACGTTTAAGATTAGTAACGTAAGCCAGGATTAT CTTTCCCTTGCTTTAAGAGGATTGTGGAAAGATGCCAAAGTTAATATCTGGATGGGGATC GTTAACCCTGCAACAGGTGCACTTCTTTACCGTTATCGTATTTTTAGTGGGTATATAGAT TATTTTAGCAGTGATTTTTCTGTAGATGGAACTAACACACAGAATGAAACCACTGTTAAT CTTAATTCTATATGGAAGAAATTAGACCAGACACAACGTCTACTATCAAGTACATCAATT CACCAATCAACCCACAAGGGTGATAAGTTCTTTGACCTAATCGGAATACTAAATAGTTCA GAACAGTTTTGGCAAGCGAGTAAAAAATAATGAATGGATTTATTACAGAATATCTTAGTA CTCTAATCGGTCAGCCAATTGTATACGGTGAAAATGATTGTCATATCATGTCGCTGACTG TTATTGATATGCTTCTTGGTACAAATTACAGGGACGAAATCTATCAGAGATATACGTCAC CTACTGGCGGTCGAAAGTACGCAAAAGAACATTGTTCATATAAATCACTAAATGCCCTAT GTAATGATCTGGGTACAAAACAAGTAGAACCATTTGATGGGGATATCCTAATTACTGGCT CCCAATCTACTGTGTACTGGAGAGGCAAAGTAATCATTTCAATCGATGGTGTTTATGCAG TAATGAAATATGAACCAATAGAAAACAATTATAAAATTTATAGATTCGGAGGGAAATAAC ATGGCAGTAGCAGCCGTATTAACAGCAGTAATAGCAGGTGCATCAGCCGCCGCCGCTGCC TATGCAGCCGTAGGTCTTGCTGCATCTATCGCTATTGGTGTTGGTGTAGCAGCACTATCT TACGTTGCATCCTCCCAGATGATGCGTGTTGGAGATCAGGGGGTAAACTATCCCAGTACT GGGACGGTTAACTCTCGAAGTACTTCACCCAGTACTGGGATACCGATTGTATATGGCGGT ACTAATAGAAGCCTGACCGAAGAATCATTTGTTAAGGTAGGTTCCATCGTCGTATGGCAG AACGTCTATAAGGGACAAAGTAACCAGCTATGTACAGTACATGCTATTAGTATCGGGGAG ATCGGACGTGCTCCAGGTGCACAATCTGGTGCCGTAATTAAACAGGTATACTTTGATAAC AGTCCAATCTTGCTGGATGATGCCGAAATAACCAGTGAGGGTATTGTTTCTACATCCCTT ATGCGTGAGAAGTATCGTAACTTCCTCCAACTCGAAATTCGTTTTGGAAAGCCGTCTTAT GGTGGTTCTATGACACTTGCCCGGCAATATGGCGGGTCTCGCTGGACTGATGAAATGCGT GGTGATGGATTAGTACAGGTTTGTTCGGTTATCCGTAAGACTAATGGTAGTCTGACCGAT GGTATTTTAGTGAATCAAAACTATGCACTTTCATTGGAGATGAAAGGACGTCTAATTTAT GACCTTACTGATAACATTCGTAAACCCTCCAGTAATCCACCAAGCCAGTTATATGACTTT ATCACAAATAATGAATTTGGTTTCAACACTGATCCTAATGATATTGATATTGCATCATTT CGTAATTGTGCAATGTACTGTAAGAATAATGAACTATATTCAAATGGTGCTATTGCCTAT GATAAGTCATATAAAGAAAACCTTGAAAGCATCTTGTCTACATTCGGTGGTGTAATATAT GAATCGAATGGCATTATGTATCTCACCGTAGATACTGCTGATGTTCCACTATATCATTTT GATGAAAAAAACATTCTCGGTACTGTGAATATCACAACTGGTTCTAATACGGATTATGCG AATACATTCGATGTGACCTATACAAACCCAGGCGGGGATTATTCAGAAGATATTATTCGT TATCCAAGTGATACGCTTACAAATGAAACAGTGGTACGGGATGGTTTAATCATTAAAAAA GACCTTAATCTAAAATGGATTCAGGACAAAAAACAACTGGCTAAAATGGCTAATACCGAG CTATTAAAATCTAAGTATGTTCTTAATAGTATAACTTTTAACACATACGTTACCGATCTC ACAGTCTACGATGTTTTTACACTCAGTTTCAAAGAAGCCGGATTTGTTAATAATAAGTTC CGTGTAATACAACGTACTGTACCGATGACCGTAGATAAGACTGGTGTCGTACAGATTACC GCTATAGCCTATGCGGACGGCATATATCAGGGGAAAGACCCTGGACGATTCCCACTGGAC GGGATCACAAATCTACCAAACGCGACATACGTAGAACCTCCATCAAACTTGCAGGTACAG AAACTCGGTGCAACCGTTAACGGCAATGCCGTGCTTATGACATGGGATTTAAGCCAGGAT TCAAGCGTACGGGGTTATAAGATTAGATATAAACGCAGTGATTCGAATACATGGATCTCG ATTGGTAACGTAGGACAGTACACCACAGAGTTTCAGATACTGAATCTAATCCACGGTGTT AAATATGATTTTGGTATTGAGGCGTATAACACTCTCGGTTATTCATCTGAGTTAGTTGCA ATTTATAATCAAACGCCACAGGTGATTTTTGCCCTACCAAAGATTACTAATCTTGATATG ACTAACGATAATATGGGCTTGAACCAGACTTATTCACAAGATTTTATATTCAGATGGGAT GATCAAAGTACTTTGCCAGTAAATGGAAAACGATTCTCTGATTTTTTCAAATATTATGAA ATTCGTGTGTATGACCGTTATCGTACATATATTAAGTCGTACTTTACAACGGACTTTAAC TGGACATATACCTTTGCAATGAATCAATCTGATGGACTTAACAGATATCGTGTAATTGGT ATTATTGCCCACGGTCACGGTACTGGAATTTATTCAGAAGAGGTACAGATTGAAGTAAGT AACCCACAGCACCCCCAATTACTTGGTGTACGTTTGCGTAATGGCTATGATAATGTGTTC TTAGAATGGGATGAATCAAACGTACCAGACTATTCTGGTGTAGTGTTCCAGTGTGCTAAG GATGAGGGTTTTAGTTCAGATGTTCACTATTTCAGTTCTTCTAACCGCTTCTCTGCTTCA TTTGGGATAGAGGATGGATCGTGGTTCGGACGTCTTGCAGCATATGATGTAATGGGACAG GATGAATTAGTATGGTCGCCAACTATTGGTTTTAATCAGAATACTAAAGTTCCGTACTCA AAGCTAAATGATGATGTTGTAGATGAATTACTGAATTCAGATGTTGCCACAGGCATTATT GAGAAACATATTGTTGATGACCTTGGATCACACTGGCAGGTTCAGGTGACGAATAACGGC AACGTATCAGGTGTATCACTTGCTAATGACGGGAAAAACTCAGCATTTACAGTAATGGCA GACCGTTTCAGTATAATCAGTACCGACAGTGCTAAACAGACTGATAAGGTATATCCGTTT GTAGTTCAGAATGGTAAGACTTATATCAATAGTGCGGTCATTGGAGACGCGAGCATAAAC ACAGGGCAGATAAATGACCTTGCTGTGACGCGGGCAAAAATTCAGATAGCAGCAATCGAC TCAGCCCGCATAGCCCAGGCCTCAATCCTTAATGGTCATATAGTTAATGGGGTTATCGAC TCAGCAAAAATATCCCAGCAAATTCAATCTACAAACTGGAATGGTAGTACAGGCTGGATG ATCAATAAGAATGGTAAGGCAAGCTTCCAGGACGTATCAGTACGGGGTAATATTCAGGCA ACCAGTGGAACCATGAATAATGTTACTATTAACCAGGACTGTACAATTCTCGGTACCCTT AATGCATCACGTATTGTTGGTGATCAGTGCAGACCTCAAAGTACTGGTGTTAATCGACAG GGGAACGTTTGGGCACCACCGGGGGTAGAATTCCCAGAAAACTATAAGCCAGAACCAGGT AGATTATATGTAGGATTGCGTATTAAGGGGGAGGACTTTGCAAGGACTCTGAATAGTAAT ATGAGTTTTTATTTTACATGCTGGAAATGGAACTATTTTCAGGTGTTTGTTGGTGGGGAT GGAATAGCAAACCGTCTATTATGGGGTTATGATGCAGGTTCCGGTGGTGAAGATACGCCA GTTTCATATAAAATTGATAATATTCAAATTCCTGCTGTAGGTAGGGGTAAGATGAATTAT CTATATGTAATGGCTTCAGATGGTCGTAGTGGTTCATGTGGACTGGATATAGGCGAACAT CAGGGGAACAATAATCTACCAGGTGACAGACTTGATCTCTTCTTATTCCGTAGTGGTGAG AATCCTGTTAGTAACTAAAACTAAATAATTATGGGTAGCCTAAAAACCACCTATAATAAT AAAAGGAACTAAAGGGAATGGTAGAATTAGTAATTGCAGGGATTGCAGTTTTTCTAACTT TTGTAGCATTAATCTGGACTATCATTCGTGATAATAAGACCGATGATGCAGAAATAGAAG CACGTCTTGCCTCTGTAGAAACACGACTTGCACTTGTAGAACAATCTGTTACTACATTAC GAAGTGAGCATGAAGCTATGAAGATTACTCTTAAGTCAGTTGATGAATCAATCAGACGAC TTGAAGTAGATATTGCACGTATTCTTGTGATACTTGAAAAATAAAAGGGGCATTAATGCC CCTTTTTATTTGTTAATTAAATCTTTAATCATCTGGTTAAGTCTATTCGGTGTCTGACGA TACCATAAACTATCCTTTGCCTGTTTAATTGCTTCTGTGTAATTATTGTTTAGTAATGCA ATGATCATCTTTTTAAACTTCTTAGTACCACTTAAGCCTAACTGAAAAATCATGATAACC ATGAAGTCTTCCCAGTCCTGTGGTAATTTCAAATTTAAGGTAGATAAATTACGTTTGGCA ATGCCAATATCTTTATCCAGTAGTTTATCTGCTTCATCCTCGTTAATGCCGTTAGGGAAC GTCTCAGAGGCTTTTAGAAGATGTCCATATCCAATCGTATCTTTGTTCTCACTACATTTA TACACCCAGAATTTACCATTGCGATAATAACCCATATGGGCCTGGTATTCTTTCGTACCT TCATATATTTTTAATTTTTCTATTAAACACATAAATACCTCATAAACTATTATTTGTGGG GTATTTATATGAAATGGACAATGCATGATCCTGAGACATGGGATTATGAAGATATAAATG ACGGGAGGTATGCAGCTTTTGTATATATGATCACTTTTGACGATGGTTCATATTATTTTG GTGTAAAGTCAATCTTCAAAAGTATTCGGGATGTAAAGAAGCTGAAGCCAACTACAAAGG AATCCAACTGGGAGAATTATTATTCTTCCTCGAAGAAGGTGCAGGCAATGGTTGATTCAG GCCTGAACTATGAAAAACAAATACTATGGTGTTTCAGAACGACGAATGAAGCTGAGCAAG TAGAAGCGGCATTGATTCTATTCTTAGGACAGCAATCAAATAATTTAAATCTTGCCGTGA TGTGCAAAGTACGGCTTGGTAAAAATCGTTCTGAAACATTCAAAGTACTGCAACAATTAT TAGAGAGGTTATCATGA
Region Details
| Region | 2 |
| Region Length | 8.7Kb |
| Completeness(score) | incomplete(40) |
| Specific Keyword | virion,tail,plate |
| Region Position | 60724-69440 |
| # tRNA | 0 |
| # Total Proteins | 8 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 75% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Vibrio_12B8_NC_021073(2) PHAGE_Cronob_vB_CsaM_GAP32_NC_019401(1) PHAGE_Pantoe_vB_PagS_Vid5_NC_042120(1) PHAGE_Entero_vB_KleM_RaK2_NC_019526(1) PHAGE_Sinorh_phiN3_NC_028945(1) PHAGE_Pectob_CBB_NC_041878(1) PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1) PHAGE_Yersin_phiR1_RT_NC_019909(1) PHAGE_Salmon_(in:Nonagvirus)_NC_042025(1) PHAGE_Citrob_Stevie_NC_027350(1) PHAGE_Entero_CAjan_NC_028776(1) PHAGE_Klebsi_Sugarland_NC_042093(1) PHAGE_Escher_slur01_NC_028831(1) PHAGE_Escher_Seurat_NC_027378(1) PHAGE_Klebsi_vB_Kpn_IME260_NC_041899(1) PHAGE_Escher_4_NC_027364(1) PHAGE_Entero_JenK1_NC_029021(1) PHAGE_Yersin_vB_YenM_TG1_NC_028820(1) PHAGE_Entero_9g_NC_024146(1) PHAGE_Entero_RB16_NC_014467(1) PHAGE_Entero_Bp7_NC_019500(1) PHAGE_Escher_121Q_NC_025447(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 25% |
| GC % | 39.22% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|UDBR01000011.1| Escherichia coli strain VREC0615 genome assembly, contig: 169349, gc%: 47.54%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 9 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 48573..50462 | PHAGE_Escher_vB_EcoM_ECOO78_NC_041926: hypothetical protein; SAMEA3752390_03108; phage(gi100055) | 3.62e-63 | Showinfo_outline |
| 2 | 50475..50951 | Uncharacterised protein; SAMEA3752390_03109 | 0.0 | Showinfo_outline |
| 3 | 50961..51953 | PHAGE_Escher_vB_EcoM_ECOO78_NC_041926: hypothetical protein; SAMEA3752390_03110; phage(gi100053) | 1.22e-16 | Showinfo_outline |
| 4 | 51957..52472 | PHAGE_Synech_S_CBS1_NC_016164: lambda-like phage portal protein; SAMEA3752390_03111; phage(gi356870797) | 5.58e-06 | Showinfo_outline |
| 5 | 52423..54237 | PHAGE_Entero_Arya_NC_031048: DNA topoisomerase II large subunit; SAMEA3752390_03112; phage(gi100005) | 2.58e-30 | Showinfo_outline |
| 6 | 54243..54539 | Uncharacterised protein; SAMEA3752390_03113 | 0.0 | Showinfo_outline |
| 7 | 54539..54976 | Uncharacterised protein; SAMEA3752390_03114 | 0.0 | Showinfo_outline |
| 8 | 54980..56662 | PHAGE_Entero_4MG_NC_022968: putative tail fiber protein; SAMEA3752390_03115; phage(gi563397501) | 9.68e-21 | Showinfo_outline |
| 9 | 56662..59520 | PHAGE_Salmon_SSE_121_NC_027351: tail fibers protein; SAMEA3752390_03116; phage(gi849120867) | 0.0 | Showinfo_outline |
Sequence
>48573..50462
EscherichiacoliMKILNQSLKSILPPPKIKPSEWCEQYTVFPDGPLAQQKTKLFSFQVEPLNATVDPSVQKICLMSSAQLLKTTILQNAMLYRMANKPSHMIFAGSSGSTVKKFRTGKWMDTINACPNLQALITDKSDKNAVNDLHTQQNVDGTKTYFVNLNSSQSLRSLTVPAIFIDELSGVDPEQDEGNPLSLIEQRATQFGKNSLIVMASTPLVQDDMICQQWELSDQRHFHVVCPHCDHDHILEWENIKFEWVKFNERRNAPEPTTARLHCPGCDEVITEGQRARMVAKGYWKAHRLHVMGFRGYHVNRLYSPITTIEKIVEDFKNSWINFEEQSFYNNVLGLPWVDKNNIKEDLTVLENLRDFDLDVKHIPDNALGIVLACDQQIDRLECSTIAFDEKNIWVLDHRMFYGVDCTKYEDKAYTELLNYSKSIFKTTSGRKVPVLRSFIDSSNGSATSSIYRFCSSSGGRWHAIKGANTQTGPITKDSTTAGHQLVNINTQVLKHQVKKLLRQACEGGEYSTNIHFSHSLVDDYFLQLTAEKLVRKGSVMVWENPNGERNECLDTLVYSLAAIDHKIQALGAQPYRKLREYRAKQKELNTKVEESIKTKAEQQPVQKEKQKSKPKKKGLSALNNRNWF
Sequence
>50475..50951
EscherichiacoliMNPRKTDLTSPIFIGETIVLDFPSTATIKIIDAKGNEQEYFPNLPIDTSQWVAGVSTAIISDGSMSVQLFTVKDPLEAANKINQLQELIDEIDMVIESKILGGGTTQLTINNKTLVTESAEVLYRMRQVYAKKLADEKARVRKVKTGNPIKSITRFTR
Sequence
>50961..51953
EscherichiacoliMFNFNFRKAKEQPKEEPKLYIGKAKIRTEPVLGNLGIETKRSISSIGNGNAAAQLGTFGAVGKSGSINAVINRVLNTAVLQSRQLSMSNPIHKKYIAQNASSVCGANGITYRPCVHVAEDDNVNNDINKRLADAFYSWCEDPARFSLNGKLEMSKFQSLVEKTRSIDGSCFIRIHPGMKIEVLDSTVIDTKGNQWLSNGNYRSNGIEFEKGTGKPVAYFLTQYDPVSYSVSTEAERVPAEEILHLFSTDYPEQQRGIPDIFCGTGLLADLDKFMRASIKTRQLAAESMGFITNASRDASFEDIDDDDDSDVDEYQVARMEGGVLLELREG
Sequence
>51957..52472
EscherichiacoliMKSLSPSQTFDALQEFLDNQLIFIGMSLDLTPQTLTGSTAGASFSASKLTDKIQQNTFLAKQNNLVKSVLQPLYIKWLKNEMLNNPMLKDLPFSKFTELTECNFIPQRHISLDPLKDLQTEILAMENGLKSKEQIISEMGYSPVLTHEQITKEETDGTKQPDEGDSSTDNQ
Sequence
>52423..54237
EscherichiacoliMELNNQTRAIQAQTISNDGIVSIAFASEFPVQREINGKVYDEVLLCGTDNVDLSRINQYMCPLLIDHDQEKQIGSVLNASIDTDRVARAEVSFYDTESYIYDMVKKGMRDGISVGYNILDYYIDGIKLIVTRWMPYEISSVACPADYVGSGINRSLPTINTDVQNEEENQFMDEHNQGTEEEITEPVLEEEVITEPELQEVEEVQEEVITVVEPEEEITEPVLEEESSTEEVIEEPEADDSIRVNEIRSIGSTFNIEESIITTAINTNTSTEEFKEQIRSTEKQNPNVKENKKMDKNLIKAMVEAAKQDREVQFEGAERGINGGFIRNFTGAETTPATGNDLVQQVYADTYIPELLKRSVLVKLNPTVISGLAGRGVLNLPVAKGVTPAFKFYKEGEAVASSVAEFGSMIMSPKIFAGEIPVSKSLILTSPNAEAFVEAELLRHAAVGLESFVFGEVLAKAPVLDSAASGIIDEADLQAAMAKLGTANVDTATCVAVMNSKQVAAFRLQPIAGNHAAIMMVGPQTDAGRTIGGELLVIVSENVPDGSVLIGDFSQLYIAQWSGQEIDMDTTTYRNRALVAYRVWDYLDVALSRPEYFLNLKAKA
Sequence
>54243..54539
EscherichiacoliMRAFINTQKNQFLDAFGENLVICQNGVASTVTAIFERDEIFFEDTNTVVSYFTSYSGLIQYSTFTLKGTEYVVNRIEDDLSGISNYFYIQKIDLDKDI
Sequence
>54539..54976
EscherichiacoliMRTSDYTIRKFLINNLSTLVNLQYQSRATVDDKPMLYIGDSTVTRSRIQKANTLINGQLIPRGINYLCEFRVDFVAVGENYKLASDEISKVIDAIYASGFINELNKLLPMDVFNVVLEESLMTTQAEATNTMYVHTQTISFSYGE
Sequence
>54980..56662
EscherichiacoliMAFITNNTSVWINTDTLNSDPKSKGFKEVPELSGFPSFGHSTATLAIETYDSEYIEKVAGDSTYGDVTITVNWVPAKHKFLDDIVKSRQLVQMKVEIPDEGQNDLTVNYALYNGYLASVSTSGDYDSVTSRSYVFTPNEQLSSGILDSTIVPLNRGDWGVGANGIEFPSYQGRDGNAFIKIPGAGSPTGTDVLGINNLDSNFGTQLVISKTGTPIINVRNYGASMGAWYKVYTSADKPTLTELGAASSASLADYVPITRTINSKPLTANITLLASDIADVYSKTYIDQNVVPKVFQLNGHALSGTALNLVAADILDVYSQTQVDTSFVKKTTTVNGLSLSQNITLTAAQLPDMASIVFTNNTYVPKTYLINNKPLSGTNIQLVAADIPDVYSRTQSNDLFALRITTINGYALNSNIVLNFDDVGTYSKKQIDDKDKVLKEDIDTKVTIVDDILKLNTLVNNSLEIDLSDSKTTFTVTLSQPTSNFSVLNASGNDKKSQTFQVLIKQGTGANKISWPTNILWSYGRVPVLTFTKDSTDVFQFVTVDGGSTWYGSLLMADMK
Sequence
>56662..59520
EscherichiacoliMKPHNIDNAYQMIEGQFKFLARNTGLTTNNKTQHYVLNPDNVLANNRHFIAETGWEAQPEGDATTEGQSLQILGAIYVYQATKDPFYLQKAKEYFNAYHKAFYRGAPFPDPPSSSLRCNWICNGKAPVLAHYPLDPEYPTHGGFKGTLFTWANGLTKIPHGAPHWGEYLDAVWFAFPKRAGLGWNQVNATAYLWLANEDSIDWDTKAPTYDVEWIIDRTGRKVDSNGTVLQSGLTGQEGTVQLKNKTITGEYRFNYATRNPVEHGGYMFKRNERWHNRPVHVPIDNYGSLDFSDNASDAELWFCQAAKLLWDITGERQYYLAWQCALLTCYGYSDIDKYDMFFRKSTIAVTPFTDGISYDYFYPSEQVASYSRDAQGYIVINQSASAQTMLEQQSIWFKFNNNSKFHIEYGGVDNTSTAMSVSAEVTVNKTKTEEGAIDYRCGLPMTNPDGSITTMDIPMNRFTRVMKPDGSNYMTADLRMIADYGDNTVTNFEYQSGVLGNYYDNVVSTTMDGDGGQVVGFWIFTPETANIQSFTYRSYDDDFNFRISDDNKWRWWAMLPATNGEWVTKTFTIADFKLNGYQPDHPEIEDPDNPGEWIQPDPIPASPVLTNRESFTLLLDADPVNGVNGKIDWYCINDLPAMYTDGGTGDYSVTVLLTFNDTTGNGYTARLGDCTIKDYMLDSLAYTPGLIPFSNITDPYAQLYSGWRGLPYPGYQLPAIWCFKGTEIDHTRLNNSINFLYDSQAWFTNKFKPSLPGPCAQAFVWNRQDALAYAPDGKPDQFIMQHWYAEAWSGYEPRAFFGGCDAVHELWSRQDSTVIPPKLISFCQNWMNYLKWFMKNNGGKAPTYFRDNGSVEYDGFTPHMSGLWLAGACMMAIAGYPDHELIQLLFDEIQLNYAVISPNHVMNGTWPASIRTGNETTAENNSMFFGFYSGELLRGLGLYVHYYNLHK
Region 2, total 8 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 60724..62985 | PHAGE_Entero_9g_NC_024146: tape measure protein; SAMEA3752390_03120; phage(gi640885137) | 2.11e-15 | Showinfo_outline |
| 2 | 63033..63587 | PHAGE_Klebsi_Sugarland_NC_042093: putative virion structural protein; SAMEA3752390_03121; phage(gi100320) | 1.80e-06 | Showinfo_outline |
| 3 | 63589..64233 | Uncharacterised protein; SAMEA3752390_03122 | 0.0 | Showinfo_outline |
| 4 | 64233..64622 | PHAGE_Vibrio_12B8_NC_021073: hypothetical protein; SAMEA3752390_03123; phage(gi481019745) | 3.16e-05 | Showinfo_outline |
| 5 | 64624..68181 | PHAGE_Entero_CAjan_NC_028776: tail fiber protein; SAMEA3752390_03124; phage(gi971742357) | 4.52e-12 | Showinfo_outline |
| 6 | 68241..68507 | Putative archaeal flagellar protein C; SAMEA3752390_03125 | 0.0 | Showinfo_outline |
| 7 | complement(68529..68975) | PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: baseplate hub subunit and tail lysozyme; SAMEA3752390_03126; phage(gi414087152) | 4.60e-32 | Showinfo_outline |
| 8 | 69012..69440 | PHAGE_Entero_RB16_NC_014467: hypothetical protein; SAMEA3752390_03127; phage(gi304373798) | 2.44e-08 | Showinfo_outline |
Sequence
>60724..62985
EscherichiacoliMAGNKQQMIFEITGDESGLQKSLKSAGNGLADFGDRAGGVFGGISGGLSTMATGLGGVGNAATLAITAITALTTYTIGLANEINALTRTTGLSAEQLQQWSGAFKTIGLSMEEVGSINEAVMDQLGIASADGSGVGADLKTFGVDVNSLIPTLKQADGGLQALSKVFFDMKKNGANLAEITNMINALGGDAAKLIPTFNSFNSEIEFNNSLAAQNVAMTNEQAKTFDLLSQNTSGLGSGLKTLAFEIVTPLIDIFNGLVKACKEIYQWFDNLKTKAVEFINSFFNWDSNNTIIQSLYDQVIKFYDMIRNVGSKIGLELPEFTPEQIAKGRKHVQTAADAVFSPLGPGIGGLAALARGYSQEDYKPTTKAYTGTTKERSNFDDGKAGEEAKKASDKAAKDRIQAAKVLEQTMNGIAGNGAALQLQQFNKTQDEIEQRIKTSATTLGKTEAEKTELLRKQTDSRKRLYKEMVDSMLTESDPLKLAQNISAIGGSMSGKDLNSVLAGQNERMGLNQDPFNMSADQNTLDTLATEGQAELALNQSLYEQKLLSYQDYQDRMVAIQQSTTDKMSQANIDAQQKTLSMYATGAQDLGTTLAGVFGESNAMAKAAFAMSKGIAVAQSIINIQQGISEAMKLGWPMGIPAGLKVAAEGANIVSTIKGTKIEGQAHDGWDSLPKTGTYNLEKGERVVGKSLNQDLTQYLNNKGGDKGGDIKIDAPLIIQGAGELTDSKFQSMCDKHADTITQAVRKSQQRNV
Sequence
>63033..63587
EscherichiacoliMFNNSLISDFILSDNIPQYQNKTWSGEVITRIVGTQYFSISFKVTTNKKYRTDLTNFLALYSSGRPFDMSLGWWGDYSGNQATGIQVTAARTAGATSIQTNTNNLSPGDLIQFSGHKKLYRVIARSGTTLNIYPGLIRNLQIGETVKYDNLMGSFILTPANSTYDLPSTNIIEMTITATENIRG
Sequence
>63589..64233
EscherichiacoliMAIPNDVLSNPELVKYWNLMRGDNKSVLTERELYQCGIMVKLIDLLPPTGSNLYLTDAVVEQNINGIVYKPIPDLIDSSFANYVEKNQINNTGTTFKISNVSQDYLSLALRGLWKDAKVNIWMGIVNPATGALLYRYRIFSGYIDYFSSDFSVDGTNTQNETTVNLNSIWKKLDQTQRLLSSTSIHQSTHKGDKFFDLIGILNSSEQFWQASKK
Sequence
>64233..64622
EscherichiacoliMNGFITEYLSTLIGQPIVYGENDCHIMSLTVIDMLLGTNYRDEIYQRYTSPTGGRKYAKEHCSYKSLNALCNDLGTKQVEPFDGDILITGSQSTVYWRGKVIISIDGVYAVMKYEPIENNYKIYRFGGK
Sequence
>64624..68181
EscherichiacoliMAVAAVLTAVIAGASAAAAAYAAVGLAASIAIGVGVAALSYVASSQMMRVGDQGVNYPSTGTVNSRSTSPSTGIPIVYGGTNRSLTEESFVKVGSIVVWQNVYKGQSNQLCTVHAISIGEIGRAPGAQSGAVIKQVYFDNSPILLDDAEITSEGIVSTSLMREKYRNFLQLEIRFGKPSYGGSMTLARQYGGSRWTDEMRGDGLVQVCSVIRKTNGSLTDGILVNQNYALSLEMKGRLIYDLTDNIRKPSSNPPSQLYDFITNNEFGFNTDPNDIDIASFRNCAMYCKNNELYSNGAIAYDKSYKENLESILSTFGGVIYESNGIMYLTVDTADVPLYHFDEKNILGTVNITTGSNTDYANTFDVTYTNPGGDYSEDIIRYPSDTLTNETVVRDGLIIKKDLNLKWIQDKKQLAKMANTELLKSKYVLNSITFNTYVTDLTVYDVFTLSFKEAGFVNNKFRVIQRTVPMTVDKTGVVQITAIAYADGIYQGKDPGRFPLDGITNLPNATYVEPPSNLQVQKLGATVNGNAVLMTWDLSQDSSVRGYKIRYKRSDSNTWISIGNVGQYTTEFQILNLIHGVKYDFGIEAYNTLGYSSELVAIYNQTPQVIFALPKITNLDMTNDNMGLNQTYSQDFIFRWDDQSTLPVNGKRFSDFFKYYEIRVYDRYRTYIKSYFTTDFNWTYTFAMNQSDGLNRYRVIGIIAHGHGTGIYSEEVQIEVSNPQHPQLLGVRLRNGYDNVFLEWDESNVPDYSGVVFQCAKDEGFSSDVHYFSSSNRFSASFGIEDGSWFGRLAAYDVMGQDELVWSPTIGFNQNTKVPYSKLNDDVVDELLNSDVATGIIEKHIVDDLGSHWQVQVTNNGNVSGVSLANDGKNSAFTVMADRFSIISTDSAKQTDKVYPFVVQNGKTYINSAVIGDASINTGQINDLAVTRAKIQIAAIDSARIAQASILNGHIVNGVIDSAKISQQIQSTNWNGSTGWMINKNGKASFQDVSVRGNIQATSGTMNNVTINQDCTILGTLNASRIVGDQCRPQSTGVNRQGNVWAPPGVEFPENYKPEPGRLYVGLRIKGEDFARTLNSNMSFYFTCWKWNYFQVFVGGDGIANRLLWGYDAGSGGEDTPVSYKIDNIQIPAVGRGKMNYLYVMASDGRSGSCGLDIGEHQGNNNLPGDRLDLFLFRSGENPVSN
Sequence
>68241..68507
EscherichiacoliMVELVIAGIAVFLTFVALIWTIIRDNKTDDAEIEARLASVETRLALVEQSVTTLRSEHEAMKITLKSVDESIRRLEVDIARILVILEK
Sequence
>complement(68529..68975)
EscherichiacoliMCLIEKLKIYEGTKEYQAHMGYYRNGKFWVYKCSENKDTIGYGHLLKASETFPNGINEDEADKLLDKDIGIAKRNLSTLNLKLPQDWEDFMVIMIFQLGLSGTKKFKKMIIALLNNNYTEAIKQAKDSLWYRQTPNRLNQMIKDLINK
Sequence
>69012..69440
EscherichiacoliMKWTMHDPETWDYEDINDGRYAAFVYMITFDDGSYYFGVKSIFKSIRDVKKLKPTTKESNWENYYSSSKKVQAMVDSGLNYEKQILWCFRTTNEAEQVEAALILFLGQQSNNLNLAVMCKVRLGKNRSETFKVLQQLLERLS
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 169349 bps
Phages: 2
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: SAMEA3752390_03108 (Region 1)
Locus: SAMEA3752390_03108ORF Start: 48573
ORF Stop: 50462
Strand: Forward
Protein Sequence: MKILNQSLKSILPPPKIKPSEWCEQYTVFPDGPLAQQKTKLFSFQVEPLNATVDPSVQKICLMSSAQLLKTTILQNAMLYRMANKPSHMIFAGSSGSTVKKFRTGKWMDTINACPNLQALITDKSDKNAVNDLHTQQNVDGTKTYFVNLNSSQSLRSLTVPAIFIDELSGVDPEQDEGNPLSLIEQRATQFGKNSLIVMASTPLVQDDMICQQWELSDQRHFHVVCPHCDHDHILEWENIKFEWVKFNERRNAPEPTTARLHCPGCDEVITEGQRARMVAKGYWKAHRLHVMGFRGYHVNRLYSPITTIEKIVEDFKNSWINFEEQSFYNNVLGLPWVDKNNIKEDLTVLENLRDFDLDVKHIPDNALGIVLACDQQIDRLECSTIAFDEKNIWVLDHRMFYGVDCTKYEDKAYTELLNYSKSIFKTTSGRKVPVLRSFIDSSNGSATSSIYRFCSSSGGRWHAIKGANTQTGPITKDSTTAGHQLVNINTQVLKHQVKKLLRQACEGGEYSTNIHFSHSLVDDYFLQLTAEKLVRKGSVMVWENPNGERNECLDTLVYSLAAIDHKIQALGAQPYRKLREYRAKQKELNTKVEESIKTKAEQQPVQKEKQKSKPKKKGLSALNNRNWF
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: SAMEA3752390_03108, hypothetical protein, phage(gi100055), PHAGE_Escher_vB_EcoM_ECOO78_NC_041926
Homolog/Ortholog E-Value: 3.62e-63
Locus 2: SAMEA3752390_03109 (Region 1)
Locus: SAMEA3752390_03109ORF Start: 50475
ORF Stop: 50951
Strand: Forward
Protein Sequence: MNPRKTDLTSPIFIGETIVLDFPSTATIKIIDAKGNEQEYFPNLPIDTSQWVAGVSTAIISDGSMSVQLFTVKDPLEAANKINQLQELIDEIDMVIESKILGGGTTQLTINNKTLVTESAEVLYRMRQVYAKKLADEKARVRKVKTGNPIKSITRFTR
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: SAMEA3752390_03109, Uncharacterised protein
Homolog/Ortholog E-Value: N/A
Locus 3: SAMEA3752390_03110 (Region 1)
Locus: SAMEA3752390_03110ORF Start: 50961
ORF Stop: 51953
Strand: Forward
Protein Sequence: MFNFNFRKAKEQPKEEPKLYIGKAKIRTEPVLGNLGIETKRSISSIGNGNAAAQLGTFGAVGKSGSINAVINRVLNTAVLQSRQLSMSNPIHKKYIAQNASSVCGANGITYRPCVHVAEDDNVNNDINKRLADAFYSWCEDPARFSLNGKLEMSKFQSLVEKTRSIDGSCFIRIHPGMKIEVLDSTVIDTKGNQWLSNGNYRSNGIEFEKGTGKPVAYFLTQYDPVSYSVSTEAERVPAEEILHLFSTDYPEQQRGIPDIFCGTGLLADLDKFMRASIKTRQLAAESMGFITNASRDASFEDIDDDDDSDVDEYQVARMEGGVLLELREG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: SAMEA3752390_03110, hypothetical protein, phage(gi100053), PHAGE_Escher_vB_EcoM_ECOO78_NC_041926
Homolog/Ortholog E-Value: 1.22e-16
Locus 4: SAMEA3752390_03111 (Region 1)
Locus: SAMEA3752390_03111ORF Start: 51957
ORF Stop: 52472
Strand: Forward
Protein Sequence: MKSLSPSQTFDALQEFLDNQLIFIGMSLDLTPQTLTGSTAGASFSASKLTDKIQQNTFLAKQNNLVKSVLQPLYIKWLKNEMLNNPMLKDLPFSKFTELTECNFIPQRHISLDPLKDLQTEILAMENGLKSKEQIISEMGYSPVLTHEQITKEETDGTKQPDEGDSSTDNQ
Homolog/Ortholog Species: Portal protein
Homolog/Ortholog Protein: SAMEA3752390_03111, lambda-like phage portal protein, phage(gi356870797), PHAGE_Synech_S_CBS1_NC_016164
Homolog/Ortholog E-Value: 5.58e-06
Locus 5: SAMEA3752390_03112 (Region 1)
Locus: SAMEA3752390_03112ORF Start: 52423
ORF Stop: 54237
Strand: Forward
Protein Sequence: MELNNQTRAIQAQTISNDGIVSIAFASEFPVQREINGKVYDEVLLCGTDNVDLSRINQYMCPLLIDHDQEKQIGSVLNASIDTDRVARAEVSFYDTESYIYDMVKKGMRDGISVGYNILDYYIDGIKLIVTRWMPYEISSVACPADYVGSGINRSLPTINTDVQNEEENQFMDEHNQGTEEEITEPVLEEEVITEPELQEVEEVQEEVITVVEPEEEITEPVLEEESSTEEVIEEPEADDSIRVNEIRSIGSTFNIEESIITTAINTNTSTEEFKEQIRSTEKQNPNVKENKKMDKNLIKAMVEAAKQDREVQFEGAERGINGGFIRNFTGAETTPATGNDLVQQVYADTYIPELLKRSVLVKLNPTVISGLAGRGVLNLPVAKGVTPAFKFYKEGEAVASSVAEFGSMIMSPKIFAGEIPVSKSLILTSPNAEAFVEAELLRHAAVGLESFVFGEVLAKAPVLDSAASGIIDEADLQAAMAKLGTANVDTATCVAVMNSKQVAAFRLQPIAGNHAAIMMVGPQTDAGRTIGGELLVIVSENVPDGSVLIGDFSQLYIAQWSGQEIDMDTTTYRNRALVAYRVWDYLDVALSRPEYFLNLKAKA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SAMEA3752390_03112, DNA topoisomerase II large subunit, phage(gi100005), PHAGE_Entero_Arya_NC_031048
Homolog/Ortholog E-Value: 2.58e-30
Locus 6: SAMEA3752390_03113 (Region 1)
Locus: SAMEA3752390_03113ORF Start: 54243
ORF Stop: 54539
Strand: Forward
Protein Sequence: MRAFINTQKNQFLDAFGENLVICQNGVASTVTAIFERDEIFFEDTNTVVSYFTSYSGLIQYSTFTLKGTEYVVNRIEDDLSGISNYFYIQKIDLDKDI
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: SAMEA3752390_03113, Uncharacterised protein
Homolog/Ortholog E-Value: N/A
Locus 7: SAMEA3752390_03114 (Region 1)
Locus: SAMEA3752390_03114ORF Start: 54539
ORF Stop: 54976
Strand: Forward
Protein Sequence: MRTSDYTIRKFLINNLSTLVNLQYQSRATVDDKPMLYIGDSTVTRSRIQKANTLINGQLIPRGINYLCEFRVDFVAVGENYKLASDEISKVIDAIYASGFINELNKLLPMDVFNVVLEESLMTTQAEATNTMYVHTQTISFSYGE
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: SAMEA3752390_03114, Uncharacterised protein
Homolog/Ortholog E-Value: N/A
Locus 8: SAMEA3752390_03115 (Region 1)
Locus: SAMEA3752390_03115ORF Start: 54980
ORF Stop: 56662
Strand: Forward
Protein Sequence: MAFITNNTSVWINTDTLNSDPKSKGFKEVPELSGFPSFGHSTATLAIETYDSEYIEKVAGDSTYGDVTITVNWVPAKHKFLDDIVKSRQLVQMKVEIPDEGQNDLTVNYALYNGYLASVSTSGDYDSVTSRSYVFTPNEQLSSGILDSTIVPLNRGDWGVGANGIEFPSYQGRDGNAFIKIPGAGSPTGTDVLGINNLDSNFGTQLVISKTGTPIINVRNYGASMGAWYKVYTSADKPTLTELGAASSASLADYVPITRTINSKPLTANITLLASDIADVYSKTYIDQNVVPKVFQLNGHALSGTALNLVAADILDVYSQTQVDTSFVKKTTTVNGLSLSQNITLTAAQLPDMASIVFTNNTYVPKTYLINNKPLSGTNIQLVAADIPDVYSRTQSNDLFALRITTINGYALNSNIVLNFDDVGTYSKKQIDDKDKVLKEDIDTKVTIVDDILKLNTLVNNSLEIDLSDSKTTFTVTLSQPTSNFSVLNASGNDKKSQTFQVLIKQGTGANKISWPTNILWSYGRVPVLTFTKDSTDVFQFVTVDGGSTWYGSLLMADMK
Homolog/Ortholog Species: Fiber protein
Homolog/Ortholog Protein: SAMEA3752390_03115, putative tail fiber protein, phage(gi563397501), PHAGE_Entero_4MG_NC_022968
Homolog/Ortholog E-Value: 9.68e-21
Locus 9: SAMEA3752390_03116 (Region 1)
Locus: SAMEA3752390_03116ORF Start: 56662
ORF Stop: 59520
Strand: Forward
Protein Sequence: MKPHNIDNAYQMIEGQFKFLARNTGLTTNNKTQHYVLNPDNVLANNRHFIAETGWEAQPEGDATTEGQSLQILGAIYVYQATKDPFYLQKAKEYFNAYHKAFYRGAPFPDPPSSSLRCNWICNGKAPVLAHYPLDPEYPTHGGFKGTLFTWANGLTKIPHGAPHWGEYLDAVWFAFPKRAGLGWNQVNATAYLWLANEDSIDWDTKAPTYDVEWIIDRTGRKVDSNGTVLQSGLTGQEGTVQLKNKTITGEYRFNYATRNPVEHGGYMFKRNERWHNRPVHVPIDNYGSLDFSDNASDAELWFCQAAKLLWDITGERQYYLAWQCALLTCYGYSDIDKYDMFFRKSTIAVTPFTDGISYDYFYPSEQVASYSRDAQGYIVINQSASAQTMLEQQSIWFKFNNNSKFHIEYGGVDNTSTAMSVSAEVTVNKTKTEEGAIDYRCGLPMTNPDGSITTMDIPMNRFTRVMKPDGSNYMTADLRMIADYGDNTVTNFEYQSGVLGNYYDNVVSTTMDGDGGQVVGFWIFTPETANIQSFTYRSYDDDFNFRISDDNKWRWWAMLPATNGEWVTKTFTIADFKLNGYQPDHPEIEDPDNPGEWIQPDPIPASPVLTNRESFTLLLDADPVNGVNGKIDWYCINDLPAMYTDGGTGDYSVTVLLTFNDTTGNGYTARLGDCTIKDYMLDSLAYTPGLIPFSNITDPYAQLYSGWRGLPYPGYQLPAIWCFKGTEIDHTRLNNSINFLYDSQAWFTNKFKPSLPGPCAQAFVWNRQDALAYAPDGKPDQFIMQHWYAEAWSGYEPRAFFGGCDAVHELWSRQDSTVIPPKLISFCQNWMNYLKWFMKNNGGKAPTYFRDNGSVEYDGFTPHMSGLWLAGACMMAIAGYPDHELIQLLFDEIQLNYAVISPNHVMNGTWPASIRTGNETTAENNSMFFGFYSGELLRGLGLYVHYYNLHK
Homolog/Ortholog Species: Fiber protein
Homolog/Ortholog Protein: SAMEA3752390_03116, tail fibers protein, phage(gi849120867), PHAGE_Salmon_SSE_121_NC_027351
Homolog/Ortholog E-Value: 0.0
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Click on a sequence to see details.
Locus 1: SAMEA3752390_03120 (Region 2)
Locus: SAMEA3752390_03120ORF Start: 60724
ORF Stop: 62985
Strand: Forward
Protein Sequence: MAGNKQQMIFEITGDESGLQKSLKSAGNGLADFGDRAGGVFGGISGGLSTMATGLGGVGNAATLAITAITALTTYTIGLANEINALTRTTGLSAEQLQQWSGAFKTIGLSMEEVGSINEAVMDQLGIASADGSGVGADLKTFGVDVNSLIPTLKQADGGLQALSKVFFDMKKNGANLAEITNMINALGGDAAKLIPTFNSFNSEIEFNNSLAAQNVAMTNEQAKTFDLLSQNTSGLGSGLKTLAFEIVTPLIDIFNGLVKACKEIYQWFDNLKTKAVEFINSFFNWDSNNTIIQSLYDQVIKFYDMIRNVGSKIGLELPEFTPEQIAKGRKHVQTAADAVFSPLGPGIGGLAALARGYSQEDYKPTTKAYTGTTKERSNFDDGKAGEEAKKASDKAAKDRIQAAKVLEQTMNGIAGNGAALQLQQFNKTQDEIEQRIKTSATTLGKTEAEKTELLRKQTDSRKRLYKEMVDSMLTESDPLKLAQNISAIGGSMSGKDLNSVLAGQNERMGLNQDPFNMSADQNTLDTLATEGQAELALNQSLYEQKLLSYQDYQDRMVAIQQSTTDKMSQANIDAQQKTLSMYATGAQDLGTTLAGVFGESNAMAKAAFAMSKGIAVAQSIINIQQGISEAMKLGWPMGIPAGLKVAAEGANIVSTIKGTKIEGQAHDGWDSLPKTGTYNLEKGERVVGKSLNQDLTQYLNNKGGDKGGDIKIDAPLIIQGAGELTDSKFQSMCDKHADTITQAVRKSQQRNV
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SAMEA3752390_03120, tape measure protein, phage(gi640885137), PHAGE_Entero_9g_NC_024146
Homolog/Ortholog E-Value: 2.11e-15
Locus 2: SAMEA3752390_03121 (Region 2)
Locus: SAMEA3752390_03121ORF Start: 63033
ORF Stop: 63587
Strand: Forward
Protein Sequence: MFNNSLISDFILSDNIPQYQNKTWSGEVITRIVGTQYFSISFKVTTNKKYRTDLTNFLALYSSGRPFDMSLGWWGDYSGNQATGIQVTAARTAGATSIQTNTNNLSPGDLIQFSGHKKLYRVIARSGTTLNIYPGLIRNLQIGETVKYDNLMGSFILTPANSTYDLPSTNIIEMTITATENIRG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: SAMEA3752390_03121, putative virion structural protein, phage(gi100320), PHAGE_Klebsi_Sugarland_NC_042093
Homolog/Ortholog E-Value: 1.80e-06
Locus 3: SAMEA3752390_03122 (Region 2)
Locus: SAMEA3752390_03122ORF Start: 63589
ORF Stop: 64233
Strand: Forward
Protein Sequence: MAIPNDVLSNPELVKYWNLMRGDNKSVLTERELYQCGIMVKLIDLLPPTGSNLYLTDAVVEQNINGIVYKPIPDLIDSSFANYVEKNQINNTGTTFKISNVSQDYLSLALRGLWKDAKVNIWMGIVNPATGALLYRYRIFSGYIDYFSSDFSVDGTNTQNETTVNLNSIWKKLDQTQRLLSSTSIHQSTHKGDKFFDLIGILNSSEQFWQASKK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: SAMEA3752390_03122, Uncharacterised protein
Homolog/Ortholog E-Value: N/A
Locus 4: SAMEA3752390_03123 (Region 2)
Locus: SAMEA3752390_03123ORF Start: 64233
ORF Stop: 64622
Strand: Forward
Protein Sequence: MNGFITEYLSTLIGQPIVYGENDCHIMSLTVIDMLLGTNYRDEIYQRYTSPTGGRKYAKEHCSYKSLNALCNDLGTKQVEPFDGDILITGSQSTVYWRGKVIISIDGVYAVMKYEPIENNYKIYRFGGK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: SAMEA3752390_03123, hypothetical protein, phage(gi481019745), PHAGE_Vibrio_12B8_NC_021073
Homolog/Ortholog E-Value: 3.16e-05
Locus 5: SAMEA3752390_03124 (Region 2)
Locus: SAMEA3752390_03124ORF Start: 64624
ORF Stop: 68181
Strand: Forward
Protein Sequence: MAVAAVLTAVIAGASAAAAAYAAVGLAASIAIGVGVAALSYVASSQMMRVGDQGVNYPSTGTVNSRSTSPSTGIPIVYGGTNRSLTEESFVKVGSIVVWQNVYKGQSNQLCTVHAISIGEIGRAPGAQSGAVIKQVYFDNSPILLDDAEITSEGIVSTSLMREKYRNFLQLEIRFGKPSYGGSMTLARQYGGSRWTDEMRGDGLVQVCSVIRKTNGSLTDGILVNQNYALSLEMKGRLIYDLTDNIRKPSSNPPSQLYDFITNNEFGFNTDPNDIDIASFRNCAMYCKNNELYSNGAIAYDKSYKENLESILSTFGGVIYESNGIMYLTVDTADVPLYHFDEKNILGTVNITTGSNTDYANTFDVTYTNPGGDYSEDIIRYPSDTLTNETVVRDGLIIKKDLNLKWIQDKKQLAKMANTELLKSKYVLNSITFNTYVTDLTVYDVFTLSFKEAGFVNNKFRVIQRTVPMTVDKTGVVQITAIAYADGIYQGKDPGRFPLDGITNLPNATYVEPPSNLQVQKLGATVNGNAVLMTWDLSQDSSVRGYKIRYKRSDSNTWISIGNVGQYTTEFQILNLIHGVKYDFGIEAYNTLGYSSELVAIYNQTPQVIFALPKITNLDMTNDNMGLNQTYSQDFIFRWDDQSTLPVNGKRFSDFFKYYEIRVYDRYRTYIKSYFTTDFNWTYTFAMNQSDGLNRYRVIGIIAHGHGTGIYSEEVQIEVSNPQHPQLLGVRLRNGYDNVFLEWDESNVPDYSGVVFQCAKDEGFSSDVHYFSSSNRFSASFGIEDGSWFGRLAAYDVMGQDELVWSPTIGFNQNTKVPYSKLNDDVVDELLNSDVATGIIEKHIVDDLGSHWQVQVTNNGNVSGVSLANDGKNSAFTVMADRFSIISTDSAKQTDKVYPFVVQNGKTYINSAVIGDASINTGQINDLAVTRAKIQIAAIDSARIAQASILNGHIVNGVIDSAKISQQIQSTNWNGSTGWMINKNGKASFQDVSVRGNIQATSGTMNNVTINQDCTILGTLNASRIVGDQCRPQSTGVNRQGNVWAPPGVEFPENYKPEPGRLYVGLRIKGEDFARTLNSNMSFYFTCWKWNYFQVFVGGDGIANRLLWGYDAGSGGEDTPVSYKIDNIQIPAVGRGKMNYLYVMASDGRSGSCGLDIGEHQGNNNLPGDRLDLFLFRSGENPVSN
Homolog/Ortholog Species: Fiber protein
Homolog/Ortholog Protein: SAMEA3752390_03124, tail fiber protein, phage(gi971742357), PHAGE_Entero_CAjan_NC_028776
Homolog/Ortholog E-Value: 4.52e-12
Locus 6: SAMEA3752390_03125 (Region 2)
Locus: SAMEA3752390_03125ORF Start: 68241
ORF Stop: 68507
Strand: Forward
Protein Sequence: MVELVIAGIAVFLTFVALIWTIIRDNKTDDAEIEARLASVETRLALVEQSVTTLRSEHEAMKITLKSVDESIRRLEVDIARILVILEK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: SAMEA3752390_03125, Putative archaeal flagellar protein C
Homolog/Ortholog E-Value: N/A
Locus 7: SAMEA3752390_03126 (Region 2)
Locus: SAMEA3752390_03126ORF Start: 68529
ORF Stop: 68975
Strand: Backward
Protein Sequence: MCLIEKLKIYEGTKEYQAHMGYYRNGKFWVYKCSENKDTIGYGHLLKASETFPNGINEDEADKLLDKDIGIAKRNLSTLNLKLPQDWEDFMVIMIFQLGLSGTKKFKKMIIALLNNNYTEAIKQAKDSLWYRQTPNRLNQMIKDLINK
Homolog/Ortholog Species: Tail protein
Homolog/Ortholog Protein: SAMEA3752390_03126, baseplate hub subunit and tail lysozyme, phage(gi414087152), PHAGE_Cronob_vB_CsaM_GAP32_NC_019401
Homolog/Ortholog E-Value: 4.60e-32
Locus 8: SAMEA3752390_03127 (Region 2)
Locus: SAMEA3752390_03127ORF Start: 69012
ORF Stop: 69440
Strand: Forward
Protein Sequence: MKWTMHDPETWDYEDINDGRYAAFVYMITFDDGSYYFGVKSIFKSIRDVKKLKPTTKESNWENYYSSSKKVQAMVDSGLNYEKQILWCFRTTNEAEQVEAALILFLGQQSNNLNLAVMCKVRLGKNRSETFKVLQQLLERLS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: SAMEA3752390_03127, hypothetical protein, phage(gi304373798), PHAGE_Entero_RB16_NC_014467
Homolog/Ortholog E-Value: 2.44e-08
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download