Submission Results
Sequence Name: Not Available
GenBank Accession Number: VXJS01000001.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: VXJS01000001.1.PHASTER.zip
gi|00000000|ref|VXJS01000001.1| Vibrio gigantis strain CCUG 56969T contig_0000001, whole genome 909225, gc%: 44.20%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 10.2Kb | incomplete | 10 | 10 | 849830-860122 info_outline | PHAGE_Escher_RCS47_NC_042128(2) | 43.88% | Show info_outline |
Region DNA
>1 849830-860122 ATGAGTATCAACAACCTTTCTATTAGGAGCAAAATCGCGATTCCATTAATGGTCATCGTG ATTGTGTTCTCAACTGTAACTGTACTTAATGTTATTAAATCTAACGCGCAAGCGGCGATT AATAATGAACTCAACAATGTTGTTCAGCCTGTGTTAGACAACCTAGAAGATGGTTACCGT GACATCTACCAAATCATTGCATCAGCTCAAGGTCTTTTACTTGCTAAAGACCAAGCGGCG ATTGATTACCAAAAATTTGAATTTAGAGATAATGCTTACAAAGCGGTCCCTCGTTTTGAA AGCGTGCAAACTCTATATACAGCAGGTGTGTTGGATCCTTCTTCTCGCGGTGAGCTGTCG AAGCTTGTGAACGCGATGAGCAAGTGGGTGTCGCTGCACGAGCCTATGTTTGCTGATCCT GCCAATGCTCATCAATACAATATTGATTACTCGCATCAGCTTGACGCTGAGTTTGCCATT ATTCGTAAGCAACTGCGTTCAATCCGAACTTTGATTGAAGTGAAACAAGCCGAGTTACGT AAGCAAGCTGACGACTCGATTGAAGCAAGTAAGGTGATCATTGAAGTAGGTATGGCCGTT GCTGTTTTCGCGGCGTGCTTTGCGATGTGGTTGTCGAATCGTTTTATCGTTCGACCTATC CAAGGTGTAGAAAAGGCGATGAGTGAAATTGCTTCTGGTGATGGTGACTTGTCGCAGCGT ATGGCTGTGAACGGAAGTGATGAAATTGCGCGCTTGAGTTCTGCATTTAACCAATTTGTA GGCAAGATCCACGTTACGGTGGAGCAGGTGATCTTAGCGTCTAACGCAGTACGTTCTGAG ATGGAAAACATTAAGTCTCTGACACAAAGCGTTGCTCAATTCTCTGCCAATCAGCAGCAA GAAAGCGAAGTGGTAGCAGCGGCTGTTCATGAGATGCAAGCTACGAGCGAAGCGGTAAGT GGAAATGCTCTTGATGCTGCTTCTGCGAGTAATACAGCCAATCGAGAAGTTGAGTCGGCT GATAAAACATTAGGCTTAACTGTGAGTTCAATTGAACGTCTGGCTCATGACATTGATAAT GCAAGTGGTGTTGTTCATGAACTTGATAGTGATGTGAAGAACATTGCTTCTATTCTTGGT GTTATTCGAGGCATTGCAGAGCAAACTAACCTATTGGCGTTGAATGCGGCTATTGAAGCA GCTCGTGCTGGTGAGCAAGGCCGTGGGTTTGCAGTTGTGGCTGATGAGGTGAGAGCCTTG GCAAGTAAAACGCAAGATAGCACGGGTGAAATTCAGTCGATGATTGAGCGTTTAGAGCAA GGCGCACAACAAGCGGTTGGCGTGATGAATGAAAGTAAGATCAGCGGTGAGAAGACGATT ATTCAAGCTGGAACTGCTGCATCCTCACTGAGTGAGATTCGTAACTCTATCGGTATGATG AACGAGATGAACACGCAAATTGCAACAGCGGCTTCTCAACAATCTCAAGTATCGGAAGAA GTGAATCAGAACGTACAACGCATCGCTGAAAGCACCATGCAGATGGTTGAAATGGCAAGC AGTGCTGAGAATGCATGCATGGCACTGGCGGAGCAATGTGAAATGCTGGACGGTCTTGTT TCTCAGTTTGAAGTTTAGGTTTTGAATATGAGCCAGCAGTAGGGCTCATTTTTAGTCCCC ATGAATTCGTGATGAACCATAAAAAAGCCCGTACTCAATGAGTGCGGGCTTTCTTTTTAG ATACGAGCTTGGTTTCGGGCTCTGCAAATAATGCGGTGTTAGCTGCTACGGCCGTCTTTA TATGTGTAGCGGTAGTCAACTTTTACGTTCGCTTGGTAATGGATGTCACCGTTCATGTTA GTGATTTTTTTCACTTCCATATTCGCGTCATCAATTTTAAACGAATCGTATTTTGTTGTT TGTTGGAACTGTGGCAGTTCTCTTGAAAGCTCAAAAGGTGTCTTTGCGCTTAACTCATCC ATAAGGTTAGTTCCTGCATCGTATGCTTCCGCTTCAGTAACAAATGTATCAGATTTTAGC GTTGTTTCTTGAATCGTTGTTTTAGTTGCTGCAAACGCTGTTGTGCTGAGTACAAGAGTT GATGCAAGTATGATTAATTTTTTCATAGGAGTACCTTACTTTGTTGAAGTACCTGTGTTC CGGTACAGAACCAACATACCAACGAAGTGGTAAGATGAGTGTCAGAGGAGAAGACGATTT TGTTAGTGTTCAGTGAGGAATATTTAGAAATGTCAGGGATTGGTTGGAATGATTTCGAGT GATTGTAGCTAGAGCAGATTTATGCGCAGAGCCTATCAAGCTAGGTGACACTTATTTGTA ACTTCAATACACTGTATGGGTAATCATCGTTCATCATAAGGTAAAAGTATGGCCAATTGG GAAGGGGTAAGTGAGTTTGTAGCCGTAGCTGAGCGTGAAAGCTTTACGGGAGCTGCGCAG AAGCTTGCTACGTCAGTTGCTCAAATCAGCCGACGAGTGGCTAACCTCGAAGAGCGCCTA GCGGTTAAACTCCTGAACAGAACAACCCGTAAAGTCTCTTTAACTGAAGCGGGTCAACTC TATTATCAACAATGTAAGTTGTTGGTTGAAGGGTTAGAAATTGCTGAGCTTGCTGTGACT CAAATGCAATCTACGCCAAAAGGGCTTTTGAAAGTTACTGCGCCAGTCACTTATGGCGAA CGTCAATTGGCGCCTATTCTGCATAAGTTTTTAAAGCTCTATCCGCAAGTTGAATTAGAG CTGATGCTAACTAACCAAAAGCTTGATCTTATCGATTCAGGTGTAGATGTGGCGATTCGC TTAGGCAGATTAGAAGATTCAAGCCTCGTGGCAAAAAAGCTGTCACAACGACAACTTTAT GTGTGTGCTAGCCCTGAGTACATTGAACGCTATGGTGAGCCTCATACGCTTTCTGAGCTG AGTAACCACCAATGTTTAGTGGGTGGCTTTGAACACTGGCGTTTTAAAGAGAACAAGCGC CCTCGCGCGGTGCGAGTGAATGGCCGAATTAAGTGTAATAGTGGCTTGGCTCTATTAGAT GCAGCAAAGCAAAGTATCGGCTTGGTGCAGCTACCTGAGTATTACGTAAGTGAAGATCTT GAATCGGGTGAGTTGGTTGAGGTTTTGACCGATTTTCGTGACGATAAAGAGGGGATTTGG GCGCTTTACCCTCAGAACCGTAACTTGTCCTCAAAGGTTCGTTTGCTGGTGGATTTCCTT TCTGAGCAATTAGATTAGTTCTATGACGGCAAGCCATTATAATGAAATTAGCCCAAACGA CCTGATACTCGGTGTGTTCGATACACTAGAGCAACATTATGGCTATTTTGATTGGTGGCA ACGGGACGACCCTTACAAGATAATCCTAGGCGCTATTCTGGTTCAGAACACCAATTGGAA AAATGCAGAAAAGGCATTGACGAATTTAGGTGATAAGTGCGAGCCAAGATCGGTTGCAGA TATGGATCTCGATGATCTTGCCCAGAAAATACGATCCAGTGGTTATTACAATCAGAAAGC CATTAAGTTGAAGGCTGTGACAGAGTGGTTTTCGAAGTACCAATACGATATGTCTGCTGT TCGTGAACAGGATAAGAATCAGTTGCGAAAAGAACTACTGGAAGTGAAAGGGATTGGTGG AGAAACGGCTGATGCTATTCTGGTGTATGCGATAGGTAAAGCGTCTTTTGTGATTGACGC GTACGCGAGAAGAATCTTTACTCGCAATGGGCTGGATGTGCCTAAATCGTATGAAAAATT CCGCTGTTTGATGGAGAGCGTGATTCCCTTAGATACCAAAAGGTATGGCTATTATCATGG CTTGTTAGTCGAACATGGGCAGCAGTTTTGTAATCCTAAGCCAAAGTGCGAACATTGCCC TTTAAATCAAGATTGCGTTAAAGCTGGAGTTTAGCCCTACTAGGCGTTATTTCTGTTATC CAATCATCCTTAGATAAAATTCGGGCTTCAGAATAGAGATTCTGAAGCCCGATGCGTTTT AGATGTTAAGTAGCATTTGGTTACTGCTTACTAGACTGAAAATGTATTAGACAGTGAAGC GATCCACCAAGTGATACAGCTCATTTGCTCGACTGTTGAGGTTTTGGCTACCTGTACGGT TTTGGTTTGCTAGTGCAGCCGATTGCGAGCTTTGATCTGAAATTACCACAATACGTTGAG AGATCTCTTGGCCCACAATATTTTGCTGTTCAGTTGCTGTAGCAATAAGCGAGTTCATGT CCATGATGGTATCGATTGACTCTTGGATTTTCGCAAGCGCCGCGGCAGCAGCGTTTGCTT CTTCCACCGTTTGAGCACTACGGTTTTGGCTTGAATCCATTGCTTTTACCGCGGCGTCTG AAGCGGCTTTTAGCTGTTCAATCATCTTGTGAATGTCGCCCGTGCTCTCTTGAGTTCGGC TTGCCAGCTTACGAACCTCATCCGCAACAACTGCGAAGCCACGGCCTTGTTCGCCTGCTC GAGCCGCTTCAATTGCGGCATTCAATGCGAGTAAGTTAGTTTGTTCTGCAATATCTTGGA TAACCGCCAATGAAGAAGAGATGTTCTGAACATCGCCTTCTAAACGCGATACCACTGTGT TGGCTTCCGATACTTCGCTCGCTAGGCCTGCAACCGAATCTGCAGCTGCGTTCACTATTT GCTGCGCTTCTTTTGCGTTGCCCTCTGCTAGTTTCGCTGAATCGGCCGCTTGGCTTGCGT TGCTTGAGATCTCTTGCGCGGTTGTGGTCATCTCAGTCATCGCCGTTGCAACTTGCTCAG TCTCTTCACGTTGGCCTGTGGCAATTTCGTCGACCTGAGCTGCGCGAGAAGACATGCTAG ACGTTTCTGCTACCACTTGCTGACCCACATCGCTTACGCTTCGAATAATGGTTTGCAGGC TGGCTACAAAGGCATTGAAGTTCTCGCTGAGCTTAGTGAATTCTGGCGCTTTGAATGTTT CCATTCGAGCGGTTAAATCAGCTTCGCCACTCGCGAATGCACTGATTGAACGGTCAAACT GCTCAAGTGGCTTCATAATTGTTCGGTTAACTGCTACTGCAAACACGGCAACCACAAGGG CGATTAATCCACAGAAAATAGCGATGGCAGTCAGTGAGCTTTGTAGTGCTGCGTTCGAGC TCTCTTTCATCTCTGCGATGACCGCATCGATGTCGTCAGTATAGAAACCGGTACCAAGCA TTAAGTCCCACTGCGGAATGAATATTGAGTAGCTGAGTTTTGGTAAAGCTTCAGATTGAC CTAGTTTTGGGAAATAGTAAGTGGTGAATTCACCCAATTTTGAGTTCTTGATTAGGTCAC GGATTAAGTAATTACCTTTCTTGTCTTGTAGGTCGTAATAGTTTTTACCAATACCATCGT TATTTTGCCCGACAACGACTCGAACGCCTTTAGAGTCATAACCAAAAATATAACCAGATT CACCATATTCGAGAGTTCTTAACGTAGGTAAGGCCTCTTCTAGTGTCGCACCTCTGTCCA AGAACGGGCTGACCGAAGAGTAGGCCATTTGCAGATACGCTTTGAGTTCCTTTTCTTTCA TCGCCATCATATTGCTACGCGTCGATTCTACTTGTTGTGCGGTTAGCTCGGTGCTCTTCA TATACGTCACGCTCATCATCCCGATTGCCATCAGTAGTAGTGGAATGAAAGAGAGAATAT AAAGGCGGTTTTTGATGGTTAGGGTCATATCACGTTTCCTGTGCGATTATTCATGCCGTT ATCAACACACTATTAATGTGGTTTCAAAATGTAAATGCGCTTTTGGTCTAATTGTTATCC GGAAGTGATTTTGTTTTGTAAACTTGATGGTGGTTGGATTTTAGCTCCTCTTGACTTATG TAACTAGGCGCTCAGTCCTTGATAGGCTTGGTTGTTTCTCTGCTTTTGAATTAGACGCTG CTTTGTTAGAATGCGACGCTTTGTAGCACCCTGCTATGTCTATTCGTTAAGTGAGAAAGA TTCATGAATAAAAGCCATGTGACTATTGGTTTAACTAACCCAAAGAGCCCGACAAACGTT GGTGCTGTTATGCGTGCGGCTGGTTGCTACCAAGTCAACGAAGTTAAATACACAGGGCGA CGCTACGAAAAAGCAGCTAAATTTCACACCGATACTAAGAGTGCTGCGCGTACTATCCCT CTGACGGGGGTTGAGTCGTTTTTGGATAATCTTGATCCAGAAACCAAGATCGTTTGTGTG GAACTAGCGGAAGGTGCGATCCCACTGCCACGTTTTAAACACCCAGAAAATGCCATCTAT ATTTTTGGTCCGGAAGACGGCTCTATTTCTCAAGATGTCGCTGACCGAGCCGATCATGTT GTTTATGTGCCGACGGTCGGTTGCATGAACCTGGCTGCGACCGTGAATGTTCTTCTTTAT GACCGCCTTGCAAAATCTGACGAGATGGATGAGAGCAATGAGTTGATTAAGAAAAGCCGC GATAACCGCAACCATTTAGTGATCAAAGAAAAGTAACTGCTGCTGTCTAGTGTTATCTAT CCTGCAGTTTATCGGATATTATCTTGATACATCATCAGATAATGGAAGGGTTAGATAACA CCATGGAAGACAAGCAATTACTTGCCGCACTACAACAAGAACCTATCCTCGATTTATATC AGTTATTTCAAAACGTCGGCAAAGATCGCTCTCTCTATGATTTATTGGAGAGGTTATCTT CCCTCAAAGAACAACATCAATTGAGCACCCAACTTAGCCCTTTGAAGCCTCATATTGAAG GGGTACTGGCTCAATTCGACGGTACCACGCCTGATAGTGACATTCTTAAGGCGGTTGCAA TTCAATCTGAGATTCAGCAACGAGGTCACAGCATGAGTCGTTACATCATGACATCGGACA ATCATCGCCACTTTTCACCTCAAGCGGATTTAGTGATGTTTGGAGACTCGATCACCGAGT GGGCGCCGTGGGCTGATATTTTTCGTGATATTTCTATGGTTAACCGCGGCTTGGCTGGTG ATACCACATCAGGCATGTTGCGACGTATTGACACCACGTTAAACGTGAATCCCCAGTTAG TCTGTTTCATGGCGGGAATCAACGACTTGGCTCAAGGCTACGGCGTTGAACATGTGTATG ATAACTACGTAAAAATGGTCAACATATGGCGAGATAATGGTATCCAAGTGTTGGTGCAGT CGACACTTTATGTTGGAACTAAGCTGCAAAGCTTAAACCCAAGTGTTGAGTCTTTAAATA GAAAGCTAAAAGATTACTGTGCGCAGCATGGCATCGAGTTTTTAGATGTGAATGCGGTAT TAGCGCCAAATCAACACTTGTCGAATGAATACACGTGTGATGATTTACATTTGAATGGCA GGGCTTATCAGGCTTGGGCTGAGATTCTGATGCCGATGCTAGATAAGTGCCTTCATGAAT AGCTAGATAGCAGTGCGTACATATCGTTAATACTAAAAAGCTCCCTTAATTTGGGAGCTT TTTGCTAGATAGGATAACCAAGCTATTCTGGCTTACACACTTCAATGAGAATGTTTTCGT GTTGAAGGTTTTTGGCTAGAGTGTTTGGTAATGCTTTGTCGGTAAATAACGTTGTTGCTT CACGAATATGGCAAAGCGCTATTGAACCTTTAGGTACAAACTTGGTTGAGTCGAGTCCAA CGTACATGTGTCTTGCTGACTTCATGACAGTTTGTACTAACTCGGTTTCGTTGAGATCAT ATTCAAGGAGAGTGCCGTCGGTATCAAGAGAGCCAGCACTCGTTAATAGGTAATCAAAAC GGAACTTTGAGATAAAATCGATAGCTTCTGTGCCGACAATACCCCCATTTGATGCTTTTA CTTTACCGCTAGGTATCAACACATCAAATGATGGATTTGAGTGTAGGATGTTTGCAACGC GTAAACTGTTAGTAATCACCTGTAAGTTGCTCTTTTTTAATAGGTGATTAGCGATAGTTT CAGCCGTTGTGCCAATAGTGATGAAGATAGTCGAATTATCAGGGACTAATTCAGCAATGC ATTTCGCAATTGCATTTTTCTCGTCAGTTTCAGCGCTTCGGCGTAGCTCGTAATCCAAGT TCGTTTTACTTGCTGGCGAACTTGCGCCACCGTGATGACGAATCAACAGCTTATCATCAC TGAGCTTTTTGATGTCTCGGCGAATGGTTTGGGTAGAGACATTTAGGCTTTCCGCTAAGT CTTCAACGGTATAGTAGCCTTCATCAATAACTAACTTTAGTAATTTATCTTGTCTAGGAT TAGTCATACTAAACCTTCTTATTATTCATTTATGTGTTTATTCACTGCTGAGCGAGTTGG TATACCTTCTCGGCCACCCAATTTAGTACATTTGATTGCAGCGACAATATTTGAGAATTT GACTGCAGCACGGGTATCCATCCCTTCAGCTACAGCCACAACCAAAGCTCCGTGGAATGT ATCGCCCGCTCCGGTTGTGTCGACAACATCAATCACTGGGGCTGCTTCATGTTGCAGCTC GTTGTTTTCTAACCAATAACAGCCGTGTTTTCCTACAGTGACGTATACTTTGCCAGAAGT TTCTTGTTTTGCTAAGCGTAATCCTGCTTCAACCTCTGAATTTTGTACAAAAGTTGACAA TCCTTCCTCTGAAAATGCGACATGATCGGCCAATTTGACCAATTCATCGATTGGATCCGG TGATAAATCAGCATCTAGAACTGACGGTATTCCATACTCTTTTGCCTTTTCTAATAGGTA CTTAGCGCCTTCAGGCCAGCGTACGTCACACAGCACTGCATCAAATTGACTAAAATCAAC ATCCATCAACATGCGAATGTCACGGCTTAGCATAGGGTCTTGGTGGTTGATGATCATACG TTCACCTTCATCATCAACAAGAACACTAGAGAAAGATGAAGATGCATTGTTTATATGAAC AATATGATTTGTTTTAACACCGTAATTGTTGAGCTCTTCGATCATGGTATTAGCTACGCT ATCACTCCCTACACGACCGACAAACTCTACTTCATGCCCTAACTTAGAAACGGCGACAGC CGCCGTTGCCGCTGGGCCTCCGCCAATTTCAAAGTAATCTTTTGATACATACTTCCCCCC TGTTGTTGGCAGTTTTTCAACAAGCTGAACACGGTCAAGAACGGTAATACCCAGGCAAGC AATTTTCATCTTTCTTCCTTTTAGCCAATACAGCTATCTAAATATAAGTACAGAGTAAAT TATATTTCCTGTGTCACCTAATACTTCGATAATGCTCACAAACTTACATTAAACAACAAA AATAGACAAAGTGTGACATGGTCAACAGTTCAATTTGTTCATTTGTTTATAGTTAACCCA CTCAAAGTGTGTTGGTATTTATAAAAGGAAAGGATTATGAGTCGCGTTGGTTTTATTGGT CTTGGTCAAATGGGAAGCCCAATGGCTTCAAACATTCTAAAAGGTGACCATGAGGTAAAG GTTTTTGACTTAAATGCAGATGCAGTAAACGGACTGGTTGAGTTGGGAGCAACGGCTGCG GAATCAGCGCTAGACGCTGCAAAAGATGTCGACTTTATTATCACTATGCTACCGAATGGT GACTTAGTGCGTCATGTATTGTTTGGTGAGCAGGGGATTGCACAAGTAATGACGCCTGAA ACGTTGTTGATTGATATGTCTACTATTCACCCATTCCAAACGGATAAGTTGGTTTCTGAT ATGGATCAACGAGGTCTACAGATGATGGAAGCTCCGGTAGGGCGCACTTCAGACCACGCG GTTAAAGGCGAGTTACTGATTCTTGCTGGTGGTAGCAAAGCCCAAATAGAGAGAGCACAG CCTCTTTTTGATTGCATGGGTTCCGAGACTGTAGATTGTGGCGGTGCGGGTAAAGGTATT CGCGTAAAAATTATCAATAATTACATGAGTATCGCGCTTAATGCGTTGTCGGCAGAAGCC GCTACTTTATCTGAAGCAATTGGTCTTGAATTCGAAACGGCATTGCAAGTGATGAGTGGT ACACCGGCTGGCAAAGGACACTTTACGACAACCTGGCCGGGTAAAGTGCTAGCAGGCGAT TTGACTCCGGCATTCATGGTGGATTTAGCGCATAAAGATCTGGGTATCGCTTTGGACTTA GCTAACCAAGTGAATGTACCAATGCCGTGTGGTGCTGCATCTCGTGAGCTTTACAGTATT GCTCGAGCTGCAGGGCGTGGTCGTCAAGACTGGACATCTGTCTTTGAACAACTTCGTGTT ACGTCAGGTTTAGAAGCAAAAATAAAACAATAA
Region Details
| Region | 1 |
| Region Length | 10.2Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 849830-860122 |
| # tRNA | 0 |
| # Total Proteins | 10 |
| # Phage Hit Proteins | 7 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 70% |
| # Bacterial Proteins | 3 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Escher_RCS47_NC_042128(2) PHAGE_Synech_S_CRM01_NC_015569(1) PHAGE_Salmon_SJ46_NC_031129(1) PHAGE_Staphy_SA1_NC_027991(1) PHAGE_Aeropy_1_NC_028268(1) PHAGE_Rhodoc_Trina_NC_042040(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 20% |
| GC % | 43.88% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|VXJS01000001.1| Vibrio gigantis strain CCUG 56969T contig_0000001, whole genome 909225, gc%: 44.20%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 10 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 849830..851467 | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; F4W18_03605; phage(gi100068) | 2.47e-06 | Showinfo_outline |
| 2 | complement(851608..851955) | DUF3316 domain-containing protein; F4W18_03610 | 0.0 | Showinfo_outline |
| 3 | 852218..853087 | LysR family transcriptional regulator; F4W18_03615 | 0.0 | Showinfo_outline |
| 4 | 853092..853763 | PHAGE_Aeropy_1_NC_028268: hypothetical protein; F4W18_03620; phage(gi948298243) | 3.23e-08 | Showinfo_outline |
| 5 | complement(853896..855557) | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; F4W18_03625; phage(gi100068) | 3.89e-06 | Showinfo_outline |
| 6 | 855833..856345 | PHAGE_Rhodoc_Trina_NC_042040: replication and recombination DNA helicase; F4W18_03630; phage(gi100033) | 1.08e-07 | Showinfo_outline |
| 7 | 856432..857271 | PHAGE_Synech_S_CRM01_NC_015569: hypothetical protein; F4W18_03635; phage(gi333798320) | 6.02e-16 | Showinfo_outline |
| 8 | complement(857352..858116) | PHAGE_Escher_RCS47_NC_042128: DNA helicase; F4W18_03640; phage(gi100021) | 4.39e-21 | Showinfo_outline |
| 9 | complement(858131..859018) | sugar kinase; F4W18_03645 | 0.0 | Showinfo_outline |
| 10 | 859226..860122 | PHAGE_Staphy_SA1_NC_027991: putative oxidoreductase; F4W18_03650; phage(gi937456879) | 3.67e-68 | Showinfo_outline |
Sequence
>849830..851467
VibriogigantisMSINNLSIRSKIAIPLMVIVIVFSTVTVLNVIKSNAQAAINNELNNVVQPVLDNLEDGYRDIYQIIASAQGLLLAKDQAAIDYQKFEFRDNAYKAVPRFESVQTLYTAGVLDPSSRGELSKLVNAMSKWVSLHEPMFADPANAHQYNIDYSHQLDAEFAIIRKQLRSIRTLIEVKQAELRKQADDSIEASKVIIEVGMAVAVFAACFAMWLSNRFIVRPIQGVEKAMSEIASGDGDLSQRMAVNGSDEIARLSSAFNQFVGKIHVTVEQVILASNAVRSEMENIKSLTQSVAQFSANQQQESEVVAAAVHEMQATSEAVSGNALDAASASNTANREVESADKTLGLTVSSIERLAHDIDNASGVVHELDSDVKNIASILGVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQDSTGEIQSMIERLEQGAQQAVGVMNESKISGEKTIIQAGTAASSLSEIRNSIGMMNEMNTQIATAASQQSQVSEEVNQNVQRIAESTMQMVEMASSAENACMALAEQCEMLDGLVSQFEV
Sequence
>complement(851608..851955)
VibriogigantisMKKLIILASTLVLSTTAFAATKTTIQETTLKSDTFVTEAEAYDAGTNLMDELSAKTPFELSRELPQFQQTTKYDSFKIDDANMEVKKITNMNGDIHYQANVKVDYRYTYKDGRSS
Sequence
>852218..853087
VibriogigantisMANWEGVSEFVAVAERESFTGAAQKLATSVAQISRRVANLEERLAVKLLNRTTRKVSLTEAGQLYYQQCKLLVEGLEIAELAVTQMQSTPKGLLKVTAPVTYGERQLAPILHKFLKLYPQVELELMLTNQKLDLIDSGVDVAIRLGRLEDSSLVAKKLSQRQLYVCASPEYIERYGEPHTLSELSNHQCLVGGFEHWRFKENKRPRAVRVNGRIKCNSGLALLDAAKQSIGLVQLPEYYVSEDLESGELVEVLTDFRDDKEGIWALYPQNRNLSSKVRLLVDFLSEQLD
Sequence
>853092..853763
VibriogigantisMTASHYNEISPNDLILGVFDTLEQHYGYFDWWQRDDPYKIILGAILVQNTNWKNAEKALTNLGDKCEPRSVADMDLDDLAQKIRSSGYYNQKAIKLKAVTEWFSKYQYDMSAVREQDKNQLRKELLEVKGIGGETADAILVYAIGKASFVIDAYARRIFTRNGLDVPKSYEKFRCLMESVIPLDTKRYGYYHGLLVEHGQQFCNPKPKCEHCPLNQDCVKAGV
Sequence
>complement(853896..855557)
VibriogigantisMTLTIKNRLYILSFIPLLLMAIGMMSVTYMKSTELTAQQVESTRSNMMAMKEKELKAYLQMAYSSVSPFLDRGATLEEALPTLRTLEYGESGYIFGYDSKGVRVVVGQNNDGIGKNYYDLQDKKGNYLIRDLIKNSKLGEFTTYYFPKLGQSEALPKLSYSIFIPQWDLMLGTGFYTDDIDAVIAEMKESSNAALQSSLTAIAIFCGLIALVVAVFAVAVNRTIMKPLEQFDRSISAFASGEADLTARMETFKAPEFTKLSENFNAFVASLQTIIRSVSDVGQQVVAETSSMSSRAAQVDEIATGQREETEQVATAMTEMTTTAQEISSNASQAADSAKLAEGNAKEAQQIVNAAADSVAGLASEVSEANTVVSRLEGDVQNISSSLAVIQDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASRTQESTGDIHKMIEQLKAASDAAVKAMDSSQNRSAQTVEEANAAAAALAKIQESIDTIMDMNSLIATATEQQNIVGQEISQRIVVISDQSSQSAALANQNRTGSQNLNSRANELYHLVDRFTV
Sequence
>855833..856345
VibriogigantisMNKSHVTIGLTNPKSPTNVGAVMRAAGCYQVNEVKYTGRRYEKAAKFHTDTKSAARTIPLTGVESFLDNLDPETKIVCVELAEGAIPLPRFKHPENAIYIFGPEDGSISQDVADRADHVVYVPTVGCMNLAATVNVLLYDRLAKSDEMDESNELIKKSRDNRNHLVIKEK
Sequence
>856432..857271
VibriogigantisMEDKQLLAALQQEPILDLYQLFQNVGKDRSLYDLLERLSSLKEQHQLSTQLSPLKPHIEGVLAQFDGTTPDSDILKAVAIQSEIQQRGHSMSRYIMTSDNHRHFSPQADLVMFGDSITEWAPWADIFRDISMVNRGLAGDTTSGMLRRIDTTLNVNPQLVCFMAGINDLAQGYGVEHVYDNYVKMVNIWRDNGIQVLVQSTLYVGTKLQSLNPSVESLNRKLKDYCAQHGIEFLDVNAVLAPNQHLSNEYTCDDLHLNGRAYQAWAEILMPMLDKCLHE
Sequence
>complement(857352..858116)
VibriogigantisMTNPRQDKLLKLVIDEGYYTVEDLAESLNVSTQTIRRDIKKLSDDKLLIRHHGGASSPASKTNLDYELRRSAETDEKNAIAKCIAELVPDNSTIFITIGTTAETIANHLLKKSNLQVITNSLRVANILHSNPSFDVLIPSGKVKASNGGIVGTEAIDFISKFRFDYLLTSAGSLDTDGTLLEYDLNETELVQTVMKSARHMYVGLDSTKFVPKGSIALCHIREATTLFTDKALPNTLAKNLQHENILIEVCKPE
Sequence
>complement(858131..859018)
VibriogigantisMKIACLGITVLDRVQLVEKLPTTGGKYVSKDYFEIGGGPAATAAVAVSKLGHEVEFVGRVGSDSVANTMIEELNNYGVKTNHIVHINNASSSFSSVLVDDEGERMIINHQDPMLSRDIRMLMDVDFSQFDAVLCDVRWPEGAKYLLEKAKEYGIPSVLDADLSPDPIDELVKLADHVAFSEEGLSTFVQNSEVEAGLRLAKQETSGKVYVTVGKHGCYWLENNELQHEAAPVIDVVDTTGAGDTFHGALVVAVAEGMDTRAAVKFSNIVAAIKCTKLGGREGIPTRSAVNKHINE
Sequence
>859226..860122
VibriogigantisMSRVGFIGLGQMGSPMASNILKGDHEVKVFDLNADAVNGLVELGATAAESALDAAKDVDFIITMLPNGDLVRHVLFGEQGIAQVMTPETLLIDMSTIHPFQTDKLVSDMDQRGLQMMEAPVGRTSDHAVKGELLILAGGSKAQIERAQPLFDCMGSETVDCGGAGKGIRVKIINNYMSIALNALSAEAATLSEAIGLEFETALQVMSGTPAGKGHFTTTWPGKVLAGDLTPAFMVDLAHKDLGIALDLANQVNVPMPCGAASRELYSIARAAGRGRQDWTSVFEQLRVTSGLEAKIKQ
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 909225 bps
Phages: 1
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Click on a sequence to see details.
Locus 1: F4W18_03605 (Region 1)
Locus: F4W18_03605ORF Start: 849830
ORF Stop: 851467
Strand: Forward
Protein Sequence: MSINNLSIRSKIAIPLMVIVIVFSTVTVLNVIKSNAQAAINNELNNVVQPVLDNLEDGYRDIYQIIASAQGLLLAKDQAAIDYQKFEFRDNAYKAVPRFESVQTLYTAGVLDPSSRGELSKLVNAMSKWVSLHEPMFADPANAHQYNIDYSHQLDAEFAIIRKQLRSIRTLIEVKQAELRKQADDSIEASKVIIEVGMAVAVFAACFAMWLSNRFIVRPIQGVEKAMSEIASGDGDLSQRMAVNGSDEIARLSSAFNQFVGKIHVTVEQVILASNAVRSEMENIKSLTQSVAQFSANQQQESEVVAAAVHEMQATSEAVSGNALDAASASNTANREVESADKTLGLTVSSIERLAHDIDNASGVVHELDSDVKNIASILGVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQDSTGEIQSMIERLEQGAQQAVGVMNESKISGEKTIIQAGTAASSLSEIRNSIGMMNEMNTQIATAASQQSQVSEEVNQNVQRIAESTMQMVEMASSAENACMALAEQCEMLDGLVSQFEV
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: F4W18_03605, hypothetical protein, phage(gi100068), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 2.47e-06
Locus 2: F4W18_03610 (Region 1)
Locus: F4W18_03610ORF Start: 851608
ORF Stop: 851955
Strand: Backward
Protein Sequence: MKKLIILASTLVLSTTAFAATKTTIQETTLKSDTFVTEAEAYDAGTNLMDELSAKTPFELSRELPQFQQTTKYDSFKIDDANMEVKKITNMNGDIHYQANVKVDYRYTYKDGRSS
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: F4W18_03610, DUF3316 domain-containing protein
Homolog/Ortholog E-Value: N/A
Locus 3: F4W18_03615 (Region 1)
Locus: F4W18_03615ORF Start: 852218
ORF Stop: 853087
Strand: Forward
Protein Sequence: MANWEGVSEFVAVAERESFTGAAQKLATSVAQISRRVANLEERLAVKLLNRTTRKVSLTEAGQLYYQQCKLLVEGLEIAELAVTQMQSTPKGLLKVTAPVTYGERQLAPILHKFLKLYPQVELELMLTNQKLDLIDSGVDVAIRLGRLEDSSLVAKKLSQRQLYVCASPEYIERYGEPHTLSELSNHQCLVGGFEHWRFKENKRPRAVRVNGRIKCNSGLALLDAAKQSIGLVQLPEYYVSEDLESGELVEVLTDFRDDKEGIWALYPQNRNLSSKVRLLVDFLSEQLD
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: F4W18_03615, LysR family transcriptional regulator
Homolog/Ortholog E-Value: N/A
Locus 4: F4W18_03620 (Region 1)
Locus: F4W18_03620ORF Start: 853092
ORF Stop: 853763
Strand: Forward
Protein Sequence: MTASHYNEISPNDLILGVFDTLEQHYGYFDWWQRDDPYKIILGAILVQNTNWKNAEKALTNLGDKCEPRSVADMDLDDLAQKIRSSGYYNQKAIKLKAVTEWFSKYQYDMSAVREQDKNQLRKELLEVKGIGGETADAILVYAIGKASFVIDAYARRIFTRNGLDVPKSYEKFRCLMESVIPLDTKRYGYYHGLLVEHGQQFCNPKPKCEHCPLNQDCVKAGV
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: F4W18_03620, hypothetical protein, phage(gi948298243), PHAGE_Aeropy_1_NC_028268
Homolog/Ortholog E-Value: 3.23e-08
Locus 5: F4W18_03625 (Region 1)
Locus: F4W18_03625ORF Start: 853896
ORF Stop: 855557
Strand: Backward
Protein Sequence: MTLTIKNRLYILSFIPLLLMAIGMMSVTYMKSTELTAQQVESTRSNMMAMKEKELKAYLQMAYSSVSPFLDRGATLEEALPTLRTLEYGESGYIFGYDSKGVRVVVGQNNDGIGKNYYDLQDKKGNYLIRDLIKNSKLGEFTTYYFPKLGQSEALPKLSYSIFIPQWDLMLGTGFYTDDIDAVIAEMKESSNAALQSSLTAIAIFCGLIALVVAVFAVAVNRTIMKPLEQFDRSISAFASGEADLTARMETFKAPEFTKLSENFNAFVASLQTIIRSVSDVGQQVVAETSSMSSRAAQVDEIATGQREETEQVATAMTEMTTTAQEISSNASQAADSAKLAEGNAKEAQQIVNAAADSVAGLASEVSEANTVVSRLEGDVQNISSSLAVIQDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASRTQESTGDIHKMIEQLKAASDAAVKAMDSSQNRSAQTVEEANAAAAALAKIQESIDTIMDMNSLIATATEQQNIVGQEISQRIVVISDQSSQSAALANQNRTGSQNLNSRANELYHLVDRFTV
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: F4W18_03625, hypothetical protein, phage(gi100068), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 3.89e-06
Locus 6: F4W18_03630 (Region 1)
Locus: F4W18_03630ORF Start: 855833
ORF Stop: 856345
Strand: Forward
Protein Sequence: MNKSHVTIGLTNPKSPTNVGAVMRAAGCYQVNEVKYTGRRYEKAAKFHTDTKSAARTIPLTGVESFLDNLDPETKIVCVELAEGAIPLPRFKHPENAIYIFGPEDGSISQDVADRADHVVYVPTVGCMNLAATVNVLLYDRLAKSDEMDESNELIKKSRDNRNHLVIKEK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: F4W18_03630, replication and recombination DNA helicase, phage(gi100033), PHAGE_Rhodoc_Trina_NC_042040
Homolog/Ortholog E-Value: 1.08e-07
Locus 7: F4W18_03635 (Region 1)
Locus: F4W18_03635ORF Start: 856432
ORF Stop: 857271
Strand: Forward
Protein Sequence: MEDKQLLAALQQEPILDLYQLFQNVGKDRSLYDLLERLSSLKEQHQLSTQLSPLKPHIEGVLAQFDGTTPDSDILKAVAIQSEIQQRGHSMSRYIMTSDNHRHFSPQADLVMFGDSITEWAPWADIFRDISMVNRGLAGDTTSGMLRRIDTTLNVNPQLVCFMAGINDLAQGYGVEHVYDNYVKMVNIWRDNGIQVLVQSTLYVGTKLQSLNPSVESLNRKLKDYCAQHGIEFLDVNAVLAPNQHLSNEYTCDDLHLNGRAYQAWAEILMPMLDKCLHE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: F4W18_03635, hypothetical protein, phage(gi333798320), PHAGE_Synech_S_CRM01_NC_015569
Homolog/Ortholog E-Value: 6.02e-16
Locus 8: F4W18_03640 (Region 1)
Locus: F4W18_03640ORF Start: 857352
ORF Stop: 858116
Strand: Backward
Protein Sequence: MTNPRQDKLLKLVIDEGYYTVEDLAESLNVSTQTIRRDIKKLSDDKLLIRHHGGASSPASKTNLDYELRRSAETDEKNAIAKCIAELVPDNSTIFITIGTTAETIANHLLKKSNLQVITNSLRVANILHSNPSFDVLIPSGKVKASNGGIVGTEAIDFISKFRFDYLLTSAGSLDTDGTLLEYDLNETELVQTVMKSARHMYVGLDSTKFVPKGSIALCHIREATTLFTDKALPNTLAKNLQHENILIEVCKPE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: F4W18_03640, DNA helicase, phage(gi100021), PHAGE_Escher_RCS47_NC_042128
Homolog/Ortholog E-Value: 4.39e-21
Locus 9: F4W18_03645 (Region 1)
Locus: F4W18_03645ORF Start: 858131
ORF Stop: 859018
Strand: Backward
Protein Sequence: MKIACLGITVLDRVQLVEKLPTTGGKYVSKDYFEIGGGPAATAAVAVSKLGHEVEFVGRVGSDSVANTMIEELNNYGVKTNHIVHINNASSSFSSVLVDDEGERMIINHQDPMLSRDIRMLMDVDFSQFDAVLCDVRWPEGAKYLLEKAKEYGIPSVLDADLSPDPIDELVKLADHVAFSEEGLSTFVQNSEVEAGLRLAKQETSGKVYVTVGKHGCYWLENNELQHEAAPVIDVVDTTGAGDTFHGALVVAVAEGMDTRAAVKFSNIVAAIKCTKLGGREGIPTRSAVNKHINE
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: F4W18_03645, sugar kinase
Homolog/Ortholog E-Value: N/A
Locus 10: F4W18_03650 (Region 1)
Locus: F4W18_03650ORF Start: 859226
ORF Stop: 860122
Strand: Forward
Protein Sequence: MSRVGFIGLGQMGSPMASNILKGDHEVKVFDLNADAVNGLVELGATAAESALDAAKDVDFIITMLPNGDLVRHVLFGEQGIAQVMTPETLLIDMSTIHPFQTDKLVSDMDQRGLQMMEAPVGRTSDHAVKGELLILAGGSKAQIERAQPLFDCMGSETVDCGGAGKGIRVKIINNYMSIALNALSAEAATLSEAIGLEFETALQVMSGTPAGKGHFTTTWPGKVLAGDLTPAFMVDLAHKDLGIALDLANQVNVPMPCGAASRELYSIARAAGRGRQDWTSVFEQLRVTSGLEAKIKQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: F4W18_03650, putative oxidoreductase, phage(gi937456879), PHAGE_Staphy_SA1_NC_027991
Homolog/Ortholog E-Value: 3.67e-68
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download